npm - molstar - Versions diffs - 2.3.6 → 2.4.0 - Mend

molstar 2.3.6 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1610) hide show

package/lib/mol-data/int/impl/sorted-array.js.map CHANGED Viewed

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1	- 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package/lib/mol-data/int/tuple.js CHANGED Viewed

@@ -75,7 +75,7 @@ var IntTuple;
     IntTuple.hashCode = hashCode;
     function toString(t) {
         _float64[0] = t;
-        return "(" + _int32[0] + ", " + _int32[1] + ")";
+        return "(".concat(_int32[0], ", ").concat(_int32[1], ")");
     }
     IntTuple.toString = toString;
 })(IntTuple || (IntTuple = {}));

package/lib/mol-data/int/tuple.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-data/util/_spec/interval-iterator.spec.js CHANGED Viewed

@@ -7,7 +7,7 @@ import { Interval, SortedArray } from '../../int';
 import { IntervalIterator } from '../interval-iterator';
 describe('interval', function () {
     function testIterator(name, interval, set, expectedValues) {
-        it("iterator, " + name, function () {
+        it("iterator, ".concat(name), function () {
             var intervalIt = new IntervalIterator(interval, set);
             var index = expectedValues.index, start = expectedValues.start, end = expectedValues.end;
             var i = 0;

package/lib/mol-data/util/_spec/interval-iterator.spec.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"interval-iterator.spec.js","sourceRoot":"","sources":["../../../../src/mol-data/util/_spec/interval-iterator.spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,QAAQ,EAAc,WAAW,EAAE,MAAM,WAAW,CAAC;AAC9D,OAAO,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC;AAExD,QAAQ,CAAC,UAAU,EAAE;IACjB,SAAS,YAAY,CAAC,IAAY,EAAE,QAAkB,EAAE,GAAe,EAAE,cAAkE;QACvI,EAAE,CAAC,~~eAAa~~,~~IAAM~~,EAAE;YACpB,IAAM,UAAU,GAAG,IAAI,gBAAgB,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;YAC/C,IAAA,KAAK,GAAiB,cAAc,MAA/B,EAAE,KAAK,GAAU,cAAc,MAAxB,EAAE,GAAG,GAAK,cAAc,IAAnB,CAAoB;YAE7C,IAAI,CAAC,GAAG,CAAC,CAAC;YACV,OAAO,UAAU,CAAC,OAAO,EAAE;gBACvB,IAAM,OAAO,GAAG,UAAU,CAAC,IAAI,EAAE,CAAC;gBAClC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBACrC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBACrC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBACjC,EAAE,CAAC,CAAC;aACP;YACD,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACjC,CAAC,CAAC,CAAC;IACP,CAAC;IAED,YAAY,CAAC,OAAO,EAChB,QAAQ,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,CAAC,EACtB,WAAW,CAAC,aAAa,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,EACvC,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAChD,CAAC;AACN,CAAC,CAAC,CAAC"}
1	+ {"version":3,"file":"interval-iterator.spec.js","sourceRoot":"","sources":["../../../../src/mol-data/util/_spec/interval-iterator.spec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,QAAQ,EAAc,WAAW,EAAE,MAAM,WAAW,CAAC;AAC9D,OAAO,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC;AAExD,QAAQ,CAAC,UAAU,EAAE;IACjB,SAAS,YAAY,CAAC,IAAY,EAAE,QAAkB,EAAE,GAAe,EAAE,cAAkE;QACvI,EAAE,CAAC,oBAAa,IAAI,CAAE,EAAE;YACpB,IAAM,UAAU,GAAG,IAAI,gBAAgB,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;YAC/C,IAAA,KAAK,GAAiB,cAAc,MAA/B,EAAE,KAAK,GAAU,cAAc,MAAxB,EAAE,GAAG,GAAK,cAAc,IAAnB,CAAoB;YAE7C,IAAI,CAAC,GAAG,CAAC,CAAC;YACV,OAAO,UAAU,CAAC,OAAO,EAAE;gBACvB,IAAM,OAAO,GAAG,UAAU,CAAC,IAAI,EAAE,CAAC;gBAClC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBACrC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBACrC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBACjC,EAAE,CAAC,CAAC;aACP;YACD,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACjC,CAAC,CAAC,CAAC;IACP,CAAC;IAED,YAAY,CAAC,OAAO,EAChB,QAAQ,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC,CAAC,EACtB,WAAW,CAAC,aAAa,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,EACvC,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAChD,CAAC;AACN,CAAC,CAAC,CAAC"}

package/lib/mol-geo/geometry/base.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -24,6 +24,18 @@ export declare const VisualQualityInfo: {
 export declare type VisualQuality = keyof typeof VisualQualityInfo;
 export declare const VisualQualityNames: ("custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest")[];
 export declare const VisualQualityOptions: ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string][];
+export declare const ColorSmoothingParams: {
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+        resolutionFactor: number;
+        sampleStride: number;
+    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
+};
+export declare type ColorSmoothingParams = typeof ColorSmoothingParams;
+export declare function hasColorSmoothingProp(props: PD.Values<any>): props is PD.Values<ColorSmoothingParams>;
+export declare function getColorSmoothingProps(smoothColors: PD.Values<ColorSmoothingParams>['smoothColors'], preferSmoothing?: boolean, resolution?: number): {
+    resolution: number;
+    stride: number;
+} | undefined;
 export declare namespace BaseGeometry {
     const Params: {
         alpha: PD.Numeric;

package/lib/mol-geo/geometry/base.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -11,6 +11,7 @@ import { ColorNames } from '../../mol-util/color/names';
 import { NullLocation } from '../../mol-model/location';
 import { UniformColorTheme } from '../../mol-theme/color/uniform';
 import { UniformSizeTheme } from '../../mol-theme/size/uniform';
+import { smoothstep } from '../../mol-math/interpolate';
 export var VisualQualityInfo = {
     'custom': {},
     'auto': {},
@@ -25,6 +26,38 @@ export var VisualQualityInfo = {
 export var VisualQualityNames = Object.keys(VisualQualityInfo);
 export var VisualQualityOptions = PD.arrayToOptions(VisualQualityNames);
 //
+export var ColorSmoothingParams = {
+    smoothColors: PD.MappedStatic('auto', {
+        auto: PD.Group({}),
+        on: PD.Group({
+            resolutionFactor: PD.Numeric(2, { min: 0.5, max: 6, step: 0.1 }),
+            sampleStride: PD.Numeric(3, { min: 1, max: 12, step: 1 }),
+        }),
+        off: PD.Group({})
+    }),
+};
+export function hasColorSmoothingProp(props) {
+    return !!props.smoothColors;
+}
+export function getColorSmoothingProps(smoothColors, preferSmoothing, resolution) {
+    if ((smoothColors.name === 'on' || (smoothColors.name === 'auto' && preferSmoothing)) && resolution && resolution < 3) {
+        var stride = 3;
+        if (smoothColors.name === 'on') {
+            resolution *= smoothColors.params.resolutionFactor;
+            stride = smoothColors.params.sampleStride;
+        }
+        else {
+            // https://graphtoy.com/?f1(x,t)=(2-smoothstep(0,1.1,x))*x&coords=0.7,0.6,1.8
+            resolution *= 2 - smoothstep(0, 1.1, resolution);
+            resolution = Math.max(0.5, resolution);
+            if (resolution > 1.2)
+                stride = 2;
+        }
+        return { resolution: resolution, stride: stride };
+    }
+    ;
+}
+//
 export var BaseGeometry;
 (function (BaseGeometry) {
     BaseGeometry.Params = {

package/lib/mol-geo/geometry/base.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts CHANGED Viewed

@@ -3,6 +3,7 @@
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
+import { MeshValues } from '../../../mol-gl/renderable/mesh';
 import { TextureImage } from '../../../mol-gl/renderable/util';
 import { WebGLContext } from '../../../mol-gl/webgl/context';
 import { Texture } from '../../../mol-gl/webgl/texture';
@@ -20,6 +21,7 @@ interface ColorSmoothingInput {
     colorType: 'group' | 'groupInstance';
     boundingSphere: Sphere3D;
     invariantBoundingSphere: Sphere3D;
+    itemSize: 4 | 3 | 1;
 }
 export declare function calcMeshColorSmoothing(input: ColorSmoothingInput, resolution: number, stride: number, webgl?: WebGLContext, texture?: Texture): {
     kind: "volume";
@@ -48,8 +50,13 @@ interface ColorInterpolationInput {
     gridTexDim: Vec2;
     gridDim: Vec3;
     gridTransform: Vec4;
-    vertexStride: number;
-    colorStride: number;
+    vertexStride: 3 | 4;
+    colorStride: 1 | 3 | 4;
+    outputStride: 1 | 3 | 4;
+    itemOffset?: 0 | 1 | 2 | 3;
 }
 export declare function getTrilinearlyInterpolated(input: ColorInterpolationInput): TextureImage<Uint8Array>;
+export declare function applyMeshColorSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
+export declare function applyMeshOverpaintSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
+export declare function applyMeshTransparencySmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
 export {};

package/lib/mol-geo/geometry/mesh/color-smoothing.js CHANGED Viewed

@@ -5,11 +5,12 @@
  */
 import { createTextureImage } from '../../../mol-gl/renderable/util';
 import { Box3D } from '../../../mol-math/geometry';
+import { lerp } from '../../../mol-math/interpolate';
 import { Vec2, Vec3, Vec4 } from '../../../mol-math/linear-algebra';
 import { getVolumeTexture2dLayout } from '../../../mol-repr/volume/util';
-import { Color } from '../../../mol-util/color';
+import { ValueCell } from '../../../mol-util';
 export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture) {
-    var colorType = input.colorType, vertexCount = input.vertexCount, groupCount = input.groupCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, groupBuffer = input.groupBuffer;
+    var colorType = input.colorType, vertexCount = input.vertexCount, groupCount = input.groupCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, groupBuffer = input.groupBuffer, itemSize = input.itemSize;
     var isInstanceType = colorType.endsWith('Instance');
     var box = Box3D.fromSphere3D(Box3D(), isInstanceType ? input.boundingSphere : input.invariantBoundingSphere);
     var scaleFactor = 1 / resolution;
@@ -21,7 +22,6 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
     var xn = gridDim[0], yn = gridDim[1];
     var _a = getVolumeTexture2dLayout(gridDim), width = _a.width, height = _a.height;
     // console.log({ width, height, dim });
-    var itemSize = 3;
     var data = new Float32Array(width * height * itemSize);
     var count = new Float32Array(width * height);
     var grid = new Uint8Array(width * height * itemSize);
@@ -50,10 +50,7 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
             var y = Math.floor(vy);
             var z = Math.floor(vz);
             // group colors
-            var ci = i * groupCount + groupBuffer[j];
-            var r = colors[ci * 3];
-            var g = colors[ci * 3 + 1];
-            var b = colors[ci * 3 + 2];
+            var ci = (i * groupCount + groupBuffer[j]) * itemSize;
             // Extents of grid to consider for this atom
             var begX = Math.max(0, x - p);
             var begY = Math.max(0, y - p);
@@ -75,33 +72,36 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
                             continue;
                         var s = p - d;
                         var index = getIndex(xi, yi, zi);
-                        data[index] += r * s;
-                        data[index + 1] += g * s;
-                        data[index + 2] += b * s;
-                        count[index / 3] += s;
+                        for (var k = 0; k < itemSize; ++k) {
+                            data[index + k] += colors[ci + k] * s;
+                        }
+                        count[index / itemSize] += s;
                     }
                 }
             }
         }
     }
     for (var i = 0, il = count.length; i < il; ++i) {
-        var i3 = i * 3;
+        var is = i * itemSize;
         var c = count[i];
-        grid[i3] = Math.round(data[i3] / c);
-        grid[i3 + 1] = Math.round(data[i3 + 1] / c);
-        grid[i3 + 2] = Math.round(data[i3 + 2] / c);
+        for (var k = 0; k < itemSize; ++k) {
+            grid[is + k] = Math.round(data[is + k] / c);
+        }
     }
     var gridTexDim = Vec2.create(width, height);
     var gridTransform = Vec4.create(min[0], min[1], min[2], scaleFactor);
     var type = isInstanceType ? 'volumeInstance' : 'volume';
     if (webgl) {
-        if (!texture)
-            texture = webgl.resources.texture('image-uint8', 'rgb', 'ubyte', 'linear');
+        if (!texture) {
+            var format = itemSize === 4 ? 'rgba' :
+                itemSize === 3 ? 'rgb' : 'alpha';
+            texture = webgl.resources.texture('image-uint8', format, 'ubyte', 'linear');
+        }
         texture.load(textureImage);
         return { kind: 'volume', texture: texture, gridTexDim: gridTexDim, gridDim: gridDim, gridTransform: gridTransform, type: type };
     }
     else {
-        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: transformBuffer, positionBuffer: positionBuffer, colorType: type, grid: grid, gridDim: gridDim, gridTexDim: gridTexDim, gridTransform: gridTransform, vertexStride: 3, colorStride: 3 });
+        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: transformBuffer, positionBuffer: positionBuffer, colorType: type, grid: grid, gridDim: gridDim, gridTexDim: gridTexDim, gridTransform: gridTransform, vertexStride: 3, colorStride: itemSize, outputStride: itemSize });
         return {
             kind: 'vertex',
             texture: interpolated,
@@ -112,9 +112,14 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
 }
 export function getTrilinearlyInterpolated(input) {
     var vertexCount = input.vertexCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, grid = input.grid, gridDim = input.gridDim, gridTexDim = input.gridTexDim, gridTransform = input.gridTransform, vertexStride = input.vertexStride, colorStride = input.colorStride;
+    var itemOffset = input.itemOffset || 0;
+    var outputStride = input.outputStride;
+    if (outputStride + itemOffset > colorStride) {
+        throw new Error('outputStride + itemOffset must NOT be larger than colorStride');
+    }
     var isInstanceType = input.colorType.endsWith('Instance');
     var instanceCount = isInstanceType ? input.instanceCount : 1;
-    var image = createTextureImage(Math.max(1, instanceCount * vertexCount), 3, Uint8Array);
+    var image = createTextureImage(Math.max(1, instanceCount * vertexCount), outputStride, Uint8Array);
     var array = image.array;
     var xn = gridDim[0], yn = gridDim[1];
     var width = gridTexDim[0];
@@ -145,23 +150,134 @@ export function getTrilinearlyInterpolated(input) {
             var x0 = v0[0], y0 = v0[1], z0 = v0[2];
             var x1 = v1[0], y1 = v1[1], z1 = v1[2];
             var xd = vd[0], yd = vd[1], zd = vd[2];
-            var s000 = Color.fromArray(grid, getIndex(x0, y0, z0));
-            var s100 = Color.fromArray(grid, getIndex(x1, y0, z0));
-            var s001 = Color.fromArray(grid, getIndex(x0, y0, z1));
-            var s101 = Color.fromArray(grid, getIndex(x1, y0, z1));
-            var s010 = Color.fromArray(grid, getIndex(x0, y1, z0));
-            var s110 = Color.fromArray(grid, getIndex(x1, y1, z0));
-            var s011 = Color.fromArray(grid, getIndex(x0, y1, z1));
-            var s111 = Color.fromArray(grid, getIndex(x1, y1, z1));
-            var s00 = Color.interpolate(s000, s100, xd);
-            var s01 = Color.interpolate(s001, s101, xd);
-            var s10 = Color.interpolate(s010, s110, xd);
-            var s11 = Color.interpolate(s011, s111, xd);
-            var s0 = Color.interpolate(s00, s10, yd);
-            var s1 = Color.interpolate(s01, s11, yd);
-            Color.toArray(Color.interpolate(s0, s1, zd), array, (i * vertexCount + j) * 3);
+            var i000 = getIndex(x0, y0, z0) + itemOffset;
+            var i100 = getIndex(x1, y0, z0) + itemOffset;
+            var i001 = getIndex(x0, y0, z1) + itemOffset;
+            var i101 = getIndex(x1, y0, z1) + itemOffset;
+            var i010 = getIndex(x0, y1, z0) + itemOffset;
+            var i110 = getIndex(x1, y1, z0) + itemOffset;
+            var i011 = getIndex(x0, y1, z1) + itemOffset;
+            var i111 = getIndex(x1, y1, z1) + itemOffset;
+            var o = (i * vertexCount + j) * outputStride;
+            for (var k = 0; k < outputStride; ++k) {
+                var s000 = grid[i000 + k];
+                var s100 = grid[i100 + k];
+                var s001 = grid[i001 + k];
+                var s101 = grid[i101 + k];
+                var s010 = grid[i010 + k];
+                var s110 = grid[i110 + k];
+                var s011 = grid[i011 + k];
+                var s111 = grid[i111 + k];
+                var s00 = lerp(s000, s100, xd);
+                var s01 = lerp(s001, s101, xd);
+                var s10 = lerp(s010, s110, xd);
+                var s11 = lerp(s011, s111, xd);
+                var s0 = lerp(s00, s10, yd);
+                var s1 = lerp(s01, s11, yd);
+                array[o + k] = lerp(s0, s1, zd);
+            }
         }
     }
     return image;
 }
+//
+function isSupportedColorType(x) {
+    return x === 'group' || x === 'groupInstance';
+}
+export function applyMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedColorType(values.dColorType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tColor.ref.value,
+        colorType: values.dColorType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 3
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
+        ValueCell.update(values.tColorGrid, smoothingData.texture);
+        ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
+        ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
+        ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
+        ValueCell.update(values.tColor, smoothingData.texture);
+        ValueCell.update(values.uColorTexDim, smoothingData.texDim);
+    }
+}
+function isSupportedOverpaintType(x) {
+    return x === 'groupInstance';
+}
+export function applyMeshOverpaintSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedOverpaintType(values.dOverpaintType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tOverpaint.ref.value,
+        colorType: values.dOverpaintType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 4
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        ValueCell.updateIfChanged(values.dOverpaintType, smoothingData.type);
+        ValueCell.update(values.tOverpaintGrid, smoothingData.texture);
+        ValueCell.update(values.uOverpaintTexDim, smoothingData.gridTexDim);
+        ValueCell.update(values.uOverpaintGridDim, smoothingData.gridDim);
+        ValueCell.update(values.uOverpaintGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        ValueCell.updateIfChanged(values.dOverpaintType, smoothingData.type);
+        ValueCell.update(values.tOverpaint, smoothingData.texture);
+        ValueCell.update(values.uOverpaintTexDim, smoothingData.texDim);
+    }
+}
+function isSupportedTransparencyType(x) {
+    return x === 'groupInstance';
+}
+export function applyMeshTransparencySmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedTransparencyType(values.dTransparencyType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tTransparency.ref.value,
+        colorType: values.dTransparencyType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 1
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        ValueCell.updateIfChanged(values.dTransparencyType, smoothingData.type);
+        ValueCell.update(values.tTransparencyGrid, smoothingData.texture);
+        ValueCell.update(values.uTransparencyTexDim, smoothingData.gridTexDim);
+        ValueCell.update(values.uTransparencyGridDim, smoothingData.gridDim);
+        ValueCell.update(values.uTransparencyGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        ValueCell.updateIfChanged(values.dTransparencyType, smoothingData.type);
+        ValueCell.update(values.tTransparency, smoothingData.texture);
+        ValueCell.update(values.uTransparencyTexDim, smoothingData.texDim);
+    }
+}
 //# sourceMappingURL=color-smoothing.js.map

package/lib/mol-geo/geometry/mesh/color-smoothing.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-geo/geometry/mesh/mesh.js CHANGED Viewed

@@ -108,7 +108,7 @@ export var Mesh;
         if (fractionDigits === void 0) { fractionDigits = 3; }
         var v = mesh.vertexBuffer.ref.value;
         var map = new Map();
-        var hash = function (v, d) { return v[0].toFixed(d) + "|" + v[1].toFixed(d) + "|" + v[2].toFixed(d); };
+        var hash = function (v, d) { return "".concat(v[0].toFixed(d), "|").concat(v[1].toFixed(d), "|").concat(v[2].toFixed(d)); };
         var duplicates = 0;
         var a = Vec3();
         for (var i = 0, il = mesh.vertexCount; i < il; ++i) {