npm - molstar - Versions diffs - 2.3.6 → 2.4.0 - Mend

molstar 2.3.6 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1610) hide show

package/lib/mol-plugin-state/actions/file.js CHANGED Viewed

@@ -15,7 +15,7 @@ export var OpenFiles = StateAction.build({
     params: function (a, ctx) {
         var _a = ctx.dataFormats, extensions = _a.extensions, options = _a.options;
         return {
-            files: PD.FileList({ accept: Array.from(extensions.values()).map(function (e) { return "." + e; }).join(',') + ',.gz,.zip', multiple: true }),
+            files: PD.FileList({ accept: Array.from(extensions.values()).map(function (e) { return ".".concat(e); }).join(',') + ',.gz,.zip', multiple: true }),
             format: PD.MappedStatic('auto', {
                 auto: PD.EmptyGroup(),
                 specific: PD.Select(options[0][0], options)
@@ -57,7 +57,7 @@ export var OpenFiles = StateAction.build({
                                             ? plugin.dataFormats.auto(info, (_b = data.cell) === null || _b === void 0 ? void 0 : _b.obj)
                                             : plugin.dataFormats.get(params.format.params);
                                         if (!provider) {
-                                            plugin.log.warn("OpenFiles: could not find data provider for '" + info.name + "." + info.ext + "'");
+                                            plugin.log.warn("OpenFiles: could not find data provider for '".concat(info.name, ".").concat(info.ext, "'"));
                                             return [3 /*break*/, 8];
                                         }
                                         return [4 /*yield*/, provider.parse(plugin, data)];
@@ -71,7 +71,8 @@ export var OpenFiles = StateAction.build({
                                     case 6: return [3 /*break*/, 8];
                                     case 7:
                                         e_1 = _d.sent();
-                                        plugin.log.error(e_1);
+                                        console.error(e_1);
+                                        plugin.log.error("Error opening file '".concat(file.name, "'"));
                                         return [3 /*break*/, 8];
                                     case 8:
                                         _i++;
@@ -115,7 +116,7 @@ export var DownloadFile = StateAction.build({
                                         _b.trys.push([0, 5, , 6]);
                                         provider = plugin.dataFormats.get(params.format);
                                         if (!provider) {
-                                            plugin.log.warn("DownloadFile: could not find data provider for '" + params.format + "'");
+                                            plugin.log.warn("DownloadFile: could not find data provider for '".concat(params.format, "'"));
                                             return [2 /*return*/];
                                         }
                                         return [4 /*yield*/, plugin.builders.data.download({ url: params.url, isBinary: params.isBinary })];
@@ -132,7 +133,8 @@ export var DownloadFile = StateAction.build({
                                     case 4: return [3 /*break*/, 6];
                                     case 5:
                                         e_2 = _b.sent();
-                                        plugin.log.error(e_2);
+                                        console.error(e_2);
+                                        plugin.log.error("Error downloading '".concat(typeof params.url === 'string' ? params.url : params.url.url, "'"));
                                         return [3 /*break*/, 6];
                                     case 6: return [2 /*return*/];
                                 }

package/lib/mol-plugin-state/actions/file.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"file.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/actions/file.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAGH,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAC9C,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAE/C,MAAM,CAAC,IAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC;IACvC,OAAO,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,8DAA8D,EAAE;IAC5G,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QACpB,IAAA,KAA0B,GAAG,CAAC,WAAW,EAAvC,UAAU,gBAAA,EAAE,OAAO,aAAoB,CAAC;QAChD,OAAO;YACH,KAAK,EAAE,EAAE,CAAC,QAAQ,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,CAAE,EAAP,CAAO,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,WAAW,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;YACzH,MAAM,EAAE,EAAE,CAAC,YAAY,CAAC,MAAM,EAAE;gBAC5B,IAAI,EAAE,EAAE,CAAC,UAAU,EAAE;gBACrB,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC;aAC9C,CAAC;YACF,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,qBAAqB,EAAE,CAAC;SACpE,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAiB,EAAE,MAAqB;QAAtC,MAAM,YAAA,EAAE,KAAK,WAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,UAAM,OAAO;;;;oBACpF,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;oBAEtD,qBAAM,KAAK,CAAC,WAAW,CAAC;;;;;;wCACpB,IAAI,MAAM,CAAC,KAAK,KAAK,IAAI,EAAE;4CACvB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;4CACxC,sBAAO;yCACV;8CAC8B,EAAZ,KAAA,MAAM,CAAC,KAAK;;;6CAAZ,CAAA,cAAY,CAAA;wCAApB,IAAI;;;;wCAED,IAAI,GAAG,WAAW,CAAC,IAAI,CAAC,IAAK,CAAC,CAAC;wCAC/B,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;wCAClD,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,EAAA;;wCAAhE,IAAI,GAAK,CAAA,SAAuD,CAAA,KAA5D;wCACN,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,KAAK,MAAM;4CAC1C,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,EAAE,MAAA,IAAI,CAAC,IAAI,0CAAE,GAAI,CAAC;4CAChD,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;wCAEnD,IAAI,CAAC,QAAQ,EAAE;4CACX,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,uDAAgD,IAAI,CAAC,IAAI,cAAI,IAAI,CAAC,GAAG,MAAG,CAAC,CAAC;4CAC1F,wBAAS;yCACZ;wCAGc,qBAAM,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wCAA3C,MAAM,GAAG,SAAkC;6CAC7C,MAAM,CAAC,OAAO,EAAd,wBAAc;wCACd,qBAAM,CAAA,MAAA,QAAQ,CAAC,OAAO,+CAAhB,QAAQ,EAAW,MAAM,EAAE,MAAM,CAAC,CAAA,EAAA;;wCAAxC,SAAwC,CAAC;;;;;wCAG7C,OAAO,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;wCACjB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,8BAAuB,IAAI,CAAC,IAAI,MAAG,CAAC,CAAC;;;wCArB3C,IAAY,CAAA;;;;;6BAwBlC,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBA7BxB,SA6BwB,CAAC;;;;SAC5B,CAAC;AAjC+C,CAiC/C,CAAC,CAAC;AAEJ,MAAM,CAAC,IAAM,YAAY,GAAG,WAAW,CAAC,KAAK,CAAC;IAC1C,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE,WAAW,EAAE,mCAAmC,EAAE;IACpF,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QAClB,IAAA,OAAO,GAAK,GAAG,CAAC,WAAW,QAApB,CAAqB;QACpC,OAAO;YACH,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;YACf,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC;YACzC,QAAQ,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;YAC3B,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,qBAAqB,EAAE,CAAC;SACpE,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAiB,EAAE,MAAqB;QAAtC,MAAM,YAAA,EAAE,KAAK,WAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,UAAM,OAAO;;;;oBACpF,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;oBAEtD,qBAAM,KAAK,CAAC,WAAW,CAAC;;;;;;;wCAEV,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;wCACvD,IAAI,CAAC,QAAQ,EAAE;4CACX,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,0DAAmD,MAAM,CAAC,MAAM,MAAG,CAAC,CAAC;4CACrF,sBAAO;yCACV;wCAEY,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,EAAA;;wCAA1F,IAAI,GAAG,SAAmF;wCACjF,qBAAM,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wCAA3C,MAAM,GAAG,SAAkC;6CAC7C,MAAM,CAAC,OAAO,EAAd,wBAAc;wCACd,qBAAM,CAAA,MAAA,QAAQ,CAAC,OAAO,+CAAhB,QAAQ,EAAW,MAAM,EAAE,MAAM,CAAC,CAAA,EAAA;;wCAAxC,SAAwC,CAAC;;;;;wCAG7C,OAAO,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;wCACjB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,6BAAsB,OAAO,MAAM,CAAC,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,MAAG,CAAC,CAAC;;;;;6BAE/G,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAjBxB,SAiBwB,CAAC;;;;SAC5B,CAAC;AArB+C,CAqB/C,CAAC,CAAC"}

package/lib/mol-plugin-state/actions/structure.d.ts CHANGED Viewed

@@ -9,10 +9,10 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { PluginStateObject } from '../objects';
 export declare const PdbDownloadProvider: {
     rcsb: PD.Group<PD.Normalize<{
-        encoding: "bcif" | "cif";
+        encoding: "cif" | "bcif";
     }>>;
     pdbe: PD.Group<PD.Normalize<{
-        variant: "updated-bcif" | "updated" | "updtaed-bcif" | "archival";
+        variant: "updated" | "updated-bcif" | "updtaed-bcif" | "archival";
     }>>;
 };
 export declare type PdbDownloadProvider = keyof typeof PdbDownloadProvider;

package/lib/mol-plugin-state/actions/structure.js CHANGED Viewed

@@ -88,35 +88,35 @@ var DownloadStructure = StateAction.build({
                         case 'pdb':
                             downloadParams = src.params.provider.server.name === 'pdbe'
                                 ? src.params.provider.server.params.variant === 'updated'
-                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/" + id.toLowerCase() + "_updated.cif"; }, function (id) { return "PDBe: " + id + " (updated cif)"; }, false)
+                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/".concat(id.toLowerCase(), "_updated.cif"); }, function (id) { return "PDBe: ".concat(id, " (updated cif)"); }, false)
                                     : src.params.provider.server.params.variant === 'updated-bcif'
-                                        ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/entry-files/download/" + id.toLowerCase() + ".bcif"; }, function (id) { return "PDBe: " + id + " (updated cif)"; }, true)
-                                        : getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/" + id.toLowerCase() + ".cif"; }, function (id) { return "PDBe: " + id + " (cif)"; }, false)
+                                        ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/entry-files/download/".concat(id.toLowerCase(), ".bcif"); }, function (id) { return "PDBe: ".concat(id, " (updated cif)"); }, true)
+                                        : getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/".concat(id.toLowerCase(), ".cif"); }, function (id) { return "PDBe: ".concat(id, " (cif)"); }, false)
                                 : src.params.provider.server.params.encoding === 'cif'
-                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://files.rcsb.org/download/" + id.toUpperCase() + ".cif"; }, function (id) { return "RCSB: " + id + " (cif)"; }, false)
-                                    : getDownloadParams(src.params.provider.id, function (id) { return "https://models.rcsb.org/" + id.toUpperCase() + ".bcif"; }, function (id) { return "RCSB: " + id + " (bcif)"; }, true);
+                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://files.rcsb.org/download/".concat(id.toUpperCase(), ".cif"); }, function (id) { return "RCSB: ".concat(id, " (cif)"); }, false)
+                                    : getDownloadParams(src.params.provider.id, function (id) { return "https://models.rcsb.org/".concat(id.toUpperCase(), ".bcif"); }, function (id) { return "RCSB: ".concat(id, " (bcif)"); }, true);
                             asTrajectory = !!src.params.options.asTrajectory;
                             break;
                         case 'pdb-dev':
                             downloadParams = getDownloadParams(src.params.provider.id, function (id) {
-                                var nId = id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_" + id.padStart(8, '0');
+                                var nId = id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_".concat(id.padStart(8, '0'));
                                 return src.params.provider.encoding === 'bcif'
-                                    ? "https://pdb-dev.wwpdb.org/bcif/" + nId.toUpperCase() + ".bcif"
-                                    : "https://pdb-dev.wwpdb.org/cif/" + nId.toUpperCase() + ".cif";
-                            }, function (id) { return id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_" + id.padStart(8, '0'); }, src.params.provider.encoding === 'bcif');
+                                    ? "https://pdb-dev.wwpdb.org/bcif/".concat(nId.toUpperCase(), ".bcif")
+                                    : "https://pdb-dev.wwpdb.org/cif/".concat(nId.toUpperCase(), ".cif");
+                            }, function (id) { return id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_".concat(id.padStart(8, '0')); }, src.params.provider.encoding === 'bcif');
                             asTrajectory = !!src.params.options.asTrajectory;
                             break;
                         case 'swissmodel':
-                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://swissmodel.expasy.org/repository/uniprot/" + id.toUpperCase() + ".pdb"; }, function (id) { return "SWISS-MODEL: " + id; }, false);
+                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://swissmodel.expasy.org/repository/uniprot/".concat(id.toUpperCase(), ".pdb"); }, function (id) { return "SWISS-MODEL: ".concat(id); }, false);
                             asTrajectory = !!src.params.options.asTrajectory;
                             format = 'pdb';
                             break;
                         case 'pubchem':
-                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/" + id.trim() + "/record/SDF/?record_type=3d"; }, function (id) { return "PubChem: " + id; }, false);
+                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/".concat(id.trim(), "/record/SDF/?record_type=3d"); }, function (id) { return "PubChem: ".concat(id); }, false);
                             asTrajectory = !!src.params.options.asTrajectory;
                             format = 'mol';
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     representationPreset = params.source.params.options.representation || PresetStructureRepresentations.auto.id;
                     showUnitcell = representationPreset !== PresetStructureRepresentations.empty.id;

package/lib/mol-plugin-state/actions/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/actions/volume.js CHANGED Viewed

@@ -72,41 +72,41 @@ var DownloadDensity = StateAction.build({
                         case 'pdb-xray':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
                                 url: Asset.Url(src.params.type === '2fofc'
-                                    ? "http://www.ebi.ac.uk/pdbe/coordinates/files/" + src.params.provider.id.toLowerCase() + ".ccp4"
-                                    : "http://www.ebi.ac.uk/pdbe/coordinates/files/" + src.params.provider.id.toLowerCase() + "_diff.ccp4"),
+                                    ? "http://www.ebi.ac.uk/pdbe/coordinates/files/".concat(src.params.provider.id.toLowerCase(), ".ccp4")
+                                    : "http://www.ebi.ac.uk/pdbe/coordinates/files/".concat(src.params.provider.id.toLowerCase(), "_diff.ccp4")),
                                 isBinary: true,
-                                label: "PDBe X-ray map: " + src.params.provider.id
+                                label: "PDBe X-ray map: ".concat(src.params.provider.id)
                             } : {
                                 url: Asset.Url(src.params.type === '2fofc'
-                                    ? "https://edmaps.rcsb.org/maps/" + src.params.provider.id.toLowerCase() + "_2fofc.dsn6"
-                                    : "https://edmaps.rcsb.org/maps/" + src.params.provider.id.toLowerCase() + "_fofc.dsn6"),
+                                    ? "https://edmaps.rcsb.org/maps/".concat(src.params.provider.id.toLowerCase(), "_2fofc.dsn6")
+                                    : "https://edmaps.rcsb.org/maps/".concat(src.params.provider.id.toLowerCase(), "_fofc.dsn6")),
                                 isBinary: true,
-                                label: "RCSB X-ray map: " + src.params.provider.id
+                                label: "RCSB X-ray map: ".concat(src.params.provider.id)
                             };
                             break;
                         case 'pdb-emd-ds':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
-                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/emd/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/emd/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "PDBe EMD Density Server: " + src.params.provider.id
+                                label: "PDBe EMD Density Server: ".concat(src.params.provider.id)
                             } : {
-                                url: Asset.Url("https://maps.rcsb.org/em/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://maps.rcsb.org/em/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "RCSB PDB EMD Density Server: " + src.params.provider.id
+                                label: "RCSB PDB EMD Density Server: ".concat(src.params.provider.id)
                             };
                             break;
                         case 'pdb-xray-ds':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
-                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/x-ray/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/x-ray/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "PDBe X-ray Density Server: " + src.params.provider.id
+                                label: "PDBe X-ray Density Server: ".concat(src.params.provider.id)
                             } : {
-                                url: Asset.Url("https://maps.rcsb.org/x-ray/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://maps.rcsb.org/x-ray/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "RCSB PDB X-ray Density Server: " + src.params.provider.id
+                                label: "RCSB PDB X-ray Density Server: ".concat(src.params.provider.id)
                             };
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     return [4 /*yield*/, plugin.builders.data.download(downloadParams)];
                 case 1:
@@ -128,7 +128,7 @@ var DownloadDensity = StateAction.build({
                             entryId = src.params.provider.id;
                             provider = plugin.dataFormats.get('dscif');
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     if (!provider) {
                         plugin.log.warn('DownloadDensity: Format provider not found.');

package/lib/mol-plugin-state/actions/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"volume.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/actions/volume.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;;AAGH,OAAO,EAAE,WAAW,EAAoB,cAAc,EAAE,MAAM,iBAAiB,CAAC;AAChF,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAG/C,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAC;AAC9C,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAIhD,OAAO,EAAE,eAAe,EAAE,CAAC;AAE3B,IAAM,eAAe,GAAG,WAAW,CAAC,KAAK,CAAC;IACtC,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,OAAO,EAAE,EAAE,IAAI,EAAE,kBAAkB,EAAE,WAAW,EAAE,wEAAwE,EAAE;IAC5H,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QAClB,IAAA,OAAO,GAAK,GAAG,CAAC,WAAW,QAApB,CAAqB;QACpC,OAAO;YACH,MAAM,EAAE,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE;gBAChC,UAAU,EAAE,EAAE,CAAC,KAAK,CAAC;oBACjB,QAAQ,EAAE,EAAE,CAAC,KAAK,CAAC;wBACf,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;wBACpC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC;qBACtE,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;oBACnB,IAAI,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,EAAE,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;iBACrE,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;gBACpB,aAAa,EAAE,EAAE,CAAC,KAAK,CAAC;oBACpB,QAAQ,EAAE,EAAE,CAAC,KAAK,CAAC;wBACf,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;wBACpC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC;qBACtE,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;oBACnB,MAAM,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC;iBAC1E,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;gBACpB,YAAY,EAAE,EAAE,CAAC,KAAK,CAAC;oBACnB,QAAQ,EAAE,EAAE,CAAC,KAAK,CAAC;wBACf,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,UAAU,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;wBACxC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAuB,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC;qBAC5F,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;oBACnB,MAAM,EAAE,EAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC;iBAC1E,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;gBACpB,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC;oBACZ,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;oBACf,QAAQ,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;oBAC3B,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;iBACrC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;aACvB,EAAE;gBACC,OAAO,EAAE;oBACL,CAAC,UAAU,EAAE,gBAAgB,CAAC;oBAC9B,CAAC,YAAY,EAAE,wBAAwB,CAAC;oBACxC,CAAC,aAAa,EAAE,0BAA0B,CAAC;oBAC3C,CAAC,KAAK,EAAE,KAAK,CAAC;iBACjB;aACJ,CAAC;SACL,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAU,EAAE,MAAqB;QAA/B,MAAM,YAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,UAAM,OAAO;;;;;;oBAC7E,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC;oBAI1B,QAAQ,GAAG,CAAC,IAAI,EAAE;wBACd,KAAK,KAAK;4BACN,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC;4BAC5B,MAAM;wBACV,KAAK,UAAU;4BACX,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC;gCACrD,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,KAAK,OAAO;oCACtC,CAAC,CAAC,sDAA+C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,UAAO;oCAC5F,CAAC,CAAC,sDAA+C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,eAAY,CAAC;gCACtG,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,0BAAmB,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BACrD,CAAC,CAAC,CAAC;gCACA,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,KAAK,OAAO;oCACtC,CAAC,CAAC,uCAAgC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,gBAAa;oCACnF,CAAC,CAAC,uCAAgC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,eAAY,CAAC;gCACvF,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,0BAAmB,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BACrD,CAAC;4BACF,MAAM;wBACV,KAAK,YAAY;4BACb,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC;gCACrD,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,mDAA4C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACnI,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,mCAA4B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BAC9D,CAAC,CAAC,CAAC;gCACA,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,mCAA4B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACnH,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,uCAAgC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BAClE,CAAC;4BACF,MAAM;wBACV,KAAK,aAAa;4BACd,cAAc,GAAG,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC;gCACrD,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,qDAA8C,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACrI,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,qCAA8B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BAChE,CAAC,CAAC,CAAC;gCACA,GAAG,EAAE,KAAK,CAAC,GAAG,CAAC,sCAA+B,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,WAAW,EAAE,0BAAgB,GAAG,CAAC,MAAM,CAAC,MAAM,CAAE,CAAC;gCACtH,QAAQ,EAAE,IAAI;gCACd,KAAK,EAAE,yCAAkC,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAE;6BACpE,CAAC;4BACF,MAAM;wBACV,OAAO,CAAC,CAAC,MAAM,IAAI,KAAK,CAAC,UAAI,GAAW,CAAC,IAAI,oBAAiB,CAAC,CAAC;qBACnE;oBAEY,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAA;;oBA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package/lib/mol-plugin-state/animation/built-in/model-index.d.ts CHANGED Viewed

@@ -12,12 +12,12 @@ export declare const AnimateModelIndex: PluginStateAnimation<{
         direction: any;
     }>, "once">;
     duration: PD.NamedParams<PD.Normalize<{
+        durationInS: any;
+    }>, "fixed"> | PD.NamedParams<PD.Normalize<{
         targetFps: any;
     }>, "computed"> | PD.NamedParams<PD.Normalize<{
         maxFps: any;
-    }>, "sequential"> | PD.NamedParams<PD.Normalize<{
-        durationInS: any;
-    }>, "fixed">;
+    }>, "sequential">;
 }, {
     palindromeDirections?: {
         [id: string]: 1 | -1 | undefined;

package/lib/mol-plugin-state/animation/helpers.d.ts CHANGED Viewed

@@ -13,13 +13,13 @@ export declare function unwindStructureAssembly(structure: Structure, unitTransf
 export declare function explodeStructure(structure: Structure, unitTransforms: StructureUnitTransforms, t: number, sphere: Sphere3D): void;
 export declare const SpinStructureParams: {
     axis: PD.Mapped<PD.NamedParams<PD.Normalize<{
-        vector: Vec3;
-    }>, "custom"> | PD.NamedParams<PD.Normalize<{
         principalAxis: "dirA" | "dirB" | "dirC";
-    }>, "structure">>;
-    origin: PD.Mapped<PD.NamedParams<PD.Normalize<{
+    }>, "structure"> | PD.NamedParams<PD.Normalize<{
+        vector: Vec3;
+    }>, "custom">>;
+    origin: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "structure"> | PD.NamedParams<PD.Normalize<{
         vector: Vec3;
-    }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "structure">>;
+    }>, "custom">>;
 };
 export declare type SpinStructureProps = PD.Values<typeof SpinStructureParams>;
 export declare function getSpinStructureAxisAndOrigin(structure: Structure, props: SpinStructureProps): {

package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts CHANGED Viewed

@@ -52,13 +52,13 @@ export declare const PresetTrajectoryHierarchy: {
             ijkMax: any;
         }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
+        }>, "model"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: any;
             id: any;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
         }>, "auto"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
-        }>, "model"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: any;
             radius: any;
         }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;

package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts CHANGED Viewed

@@ -34,13 +34,13 @@ export declare class TrajectoryHierarchyBuilder {
             ijkMax: any;
         }>, "symmetry"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
+        }>, "model"> | PD.NamedParams<PD.Normalize<{
+            dynamicBonds: any;
             id: any;
         }>, "assembly"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
         }>, "auto"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;
-        }>, "model"> | PD.NamedParams<PD.Normalize<{
-            dynamicBonds: any;
             radius: any;
         }>, "symmetry-mates"> | PD.NamedParams<PD.Normalize<{
             dynamicBonds: any;

package/lib/mol-plugin-state/builder/structure/hierarchy.js CHANGED Viewed

@@ -78,7 +78,7 @@ var TrajectoryHierarchyBuilder = /** @class */ (function () {
     };
     TrajectoryHierarchyBuilder.prototype.registerPreset = function (provider) {
         if (this.providerMap.has(provider.id)) {
-            throw new Error("Hierarchy provider with id '" + provider.id + "' already registered.");
+            throw new Error("Hierarchy provider with id '".concat(provider.id, "' already registered."));
         }
         this._providers.push(provider);
         this.providerMap.set(provider.id, provider);
@@ -102,7 +102,7 @@ var TrajectoryHierarchyBuilder = /** @class */ (function () {
         var prms = params || (provider.params
             ? PD.getDefaultValues(provider.params(cell.obj, this.plugin))
             : {});
-        var task = Task.create("" + provider.display.name, function () { return provider.apply(cell, prms, _this.plugin); });
+        var task = Task.create("".concat(provider.display.name), function () { return provider.apply(cell, prms, _this.plugin); });
         return this.plugin.runTask(task);
     };
     return TrajectoryHierarchyBuilder;

package/lib/mol-plugin-state/builder/structure/hierarchy.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"hierarchy.js","sourceRoot":"","sources":["../../../../src/mol-plugin-state/builder/structure/hierarchy.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEnD,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAE3E,OAAO,EAAE,yBAAyB,EAAqC,MAAM,oBAAoB,CAAC;AAClG,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAM7D;IAuFI,oCAAmB,MAAqB;QAAxC,iBAEC;QAFkB,WAAM,GAAN,MAAM,CAAe;QAtFhC,eAAU,GAAwC,EAAE,CAAC;QACrD,gBAAW,GAAmD,IAAI,GAAG,EAAE,CAAC;QAEvE,oBAAe,GAAG,yBAAyB,CAAC,OAAO,CAAC;QAoFzD,aAAa,CAAC,yBAAyB,EAAE,UAAA,CAAC,IAAI,OAAA,KAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAtB,CAAsB,CAAC,CAAC;IAC1E,CAAC;IAnFO,oDAAe,GAAvB,UAAwB,GAAyC;;QAC7D,OAAO,OAAO,GAAG,KAAK,QAAQ;YAC1B,CAAC,CAAC,MAAA,yBAAyB,CAAC,GAAsC,CAAC,mCAAI,SAAS,CAAC,IAAI,CAAC,UAAU,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,EAAE,KAAK,GAAG,EAAZ,CAAY,CAAC;YACpH,CAAC,CAAC,GAAG,CAAC;IACd,CAAC;IAED,8CAAS,GAAT,UAAU,CAAwC;QAC9C,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,OAAO,IAAI,CAAC;SACtE;QACD,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,sBAAI,iDAAS;aAAb,cAAoE,OAAO,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;;;OAAA;IAE7F,+CAAU,GAAV,UAAW,CAAyC;QAChD,IAAI,CAAC,CAAC;YAAE,OAAO,IAAI,CAAC,SAAS,CAAC;QAC9B,IAAM,GAAG,GAAG,EAAE,CAAC;QACf,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAChE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SACf;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,oDAAe,GAAf,UAAgB,CAAyC;QACrD,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YACrE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;SACxC;QACD,OAAO,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACtC,CAAC;IAED,0DAAqB,GAArB,UAAsB,CAAwC;QAC1D,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,IAAM,GAAG,GAA8B,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QAC3D,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAEhE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;YACrC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC;SAC/E;QACD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,EAAE,CAAC,YAAY,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,CAAC;QAC9E,OAAO,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,OAAO,SAAA,EAAE,CAAC,CAAC;IAC5D,CAAC;IAED,mDAAc,GAAd,UAAe,QAA2C;QACtD,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE;YACnC,MAAM,IAAI,KAAK,CAAC,~~iCAA~~+B,QAAQ,CAAC,EAAE,0BAAuB,CAAC,CAAC;SACtF;QACD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/B,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;IAChD,CAAC;IAED,qDAAgB,GAAhB,UAAiB,QAA2C;QACxD,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;QACrC,kBAAkB,CAAC,IAAI,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IAClD,CAAC;IAID,gDAAW,GAAX,UAAY,MAAsB,EAAE,WAAuD,EAAE,MAAY;QAAzG,iBAiBC;QAhBG,IAAM,QAAQ,GAAG,IAAI,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC;QACnD,IAAI,CAAC,QAAQ;YAAE,OAAO;QAEtB,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QACrC,IAAM,IAAI,GAAG,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAC3D,IAAI,CAAC,IAAI,EAAE;YACP,IAAI,CAAC,gBAAgB;gBAAE,OAAO,CAAC,IAAI,CAAC,iDAAiD,CAAC,CAAC;YACvF,OAAO;SACV;QAED,IAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM;YACnC,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAc,CAAC;YAC1E,CAAC,CAAC,EAAE,CAAC,CAAC;QAEV,IAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,~~KAAG~~,QAAQ,CAAC,OAAO,CAAC,~~IAAM~~,EAAE,cAAM,OAAA,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,KAAI,CAAC,MAAM,CAAiB,EAAvD,CAAuD,CAAC,CAAC;QACpH,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IACrC,CAAC;IAKL,iCAAC;AAAD,CAAC,AA1FD,IA0FC"}
1	+ {"version":3,"file":"hierarchy.js","sourceRoot":"","sources":["../../../../src/mol-plugin-state/builder/structure/hierarchy.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEnD,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAE3E,OAAO,EAAE,yBAAyB,EAAqC,MAAM,oBAAoB,CAAC;AAClG,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAM7D;IAuFI,oCAAmB,MAAqB;QAAxC,iBAEC;QAFkB,WAAM,GAAN,MAAM,CAAe;QAtFhC,eAAU,GAAwC,EAAE,CAAC;QACrD,gBAAW,GAAmD,IAAI,GAAG,EAAE,CAAC;QAEvE,oBAAe,GAAG,yBAAyB,CAAC,OAAO,CAAC;QAoFzD,aAAa,CAAC,yBAAyB,EAAE,UAAA,CAAC,IAAI,OAAA,KAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAtB,CAAsB,CAAC,CAAC;IAC1E,CAAC;IAnFO,oDAAe,GAAvB,UAAwB,GAAyC;;QAC7D,OAAO,OAAO,GAAG,KAAK,QAAQ;YAC1B,CAAC,CAAC,MAAA,yBAAyB,CAAC,GAAsC,CAAC,mCAAI,SAAS,CAAC,IAAI,CAAC,UAAU,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,EAAE,KAAK,GAAG,EAAZ,CAAY,CAAC;YACpH,CAAC,CAAC,GAAG,CAAC;IACd,CAAC;IAED,8CAAS,GAAT,UAAU,CAAwC;QAC9C,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,OAAO,IAAI,CAAC;SACtE;QACD,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,sBAAI,iDAAS;aAAb,cAAoE,OAAO,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;;;OAAA;IAE7F,+CAAU,GAAV,UAAW,CAAyC;QAChD,IAAI,CAAC,CAAC;YAAE,OAAO,IAAI,CAAC,SAAS,CAAC;QAC9B,IAAM,GAAG,GAAG,EAAE,CAAC;QACf,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAChE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SACf;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,oDAAe,GAAf,UAAgB,CAAyC;QACrD,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YACrE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;SACxC;QACD,OAAO,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACtC,CAAC;IAED,0DAAqB,GAArB,UAAsB,CAAwC;QAC1D,IAAM,OAAO,GAAuB,EAAE,CAAC;QACvC,IAAM,GAAG,GAA8B,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QAC3D,KAAgB,UAAe,EAAf,KAAA,IAAI,CAAC,UAAU,EAAf,cAAe,EAAf,IAAe,EAAE;YAA5B,IAAM,CAAC,SAAA;YACR,IAAI,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC;gBAAE,SAAS;YAEhE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;YACrC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC;SAC/E;QACD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,EAAE,CAAC,YAAY,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,CAAC;QAC9E,OAAO,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,OAAO,SAAA,EAAE,CAAC,CAAC;IAC5D,CAAC;IAED,mDAAc,GAAd,UAAe,QAA2C;QACtD,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE;YACnC,MAAM,IAAI,KAAK,CAAC,sCAA+B,QAAQ,CAAC,EAAE,0BAAuB,CAAC,CAAC;SACtF;QACD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/B,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;IAChD,CAAC;IAED,qDAAgB,GAAhB,UAAiB,QAA2C;QACxD,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;QACrC,kBAAkB,CAAC,IAAI,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IAClD,CAAC;IAID,gDAAW,GAAX,UAAY,MAAsB,EAAE,WAAuD,EAAE,MAAY;QAAzG,iBAiBC;QAhBG,IAAM,QAAQ,GAAG,IAAI,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC;QACnD,IAAI,CAAC,QAAQ;YAAE,OAAO;QAEtB,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QACrC,IAAM,IAAI,GAAG,cAAc,CAAC,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAC3D,IAAI,CAAC,IAAI,EAAE;YACP,IAAI,CAAC,gBAAgB;gBAAE,OAAO,CAAC,IAAI,CAAC,iDAAiD,CAAC,CAAC;YACvF,OAAO;SACV;QAED,IAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM;YACnC,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAc,CAAC;YAC1E,CAAC,CAAC,EAAE,CAAC,CAAC;QAEV,IAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,UAAG,QAAQ,CAAC,OAAO,CAAC,IAAI,CAAE,EAAE,cAAM,OAAA,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,KAAI,CAAC,MAAM,CAAiB,EAAvD,CAAuD,CAAC,CAAC;QACpH,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IACrC,CAAC;IAKL,iCAAC;AAAD,CAAC,AA1FD,IA0FC"}

package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts CHANGED Viewed

@@ -31,9 +31,9 @@ export declare namespace StructureRepresentationPresetProvider {
         ignoreHydrogens: PD.Base<boolean | undefined>;
         quality: PD.Base<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined>;
         theme: PD.Base<PD.Normalize<{
-            globalName: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
+            globalName: "occupancy" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | "uniform" | undefined;
             carbonColor: "chain-id" | "operator-name" | "element-symbol" | undefined;
-            symmetryColor: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
+            symmetryColor: "occupancy" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | "uniform" | undefined;
             focus: PD.Normalize<{
                 name: any;
                 params: any;
@@ -44,8 +44,8 @@ export declare namespace StructureRepresentationPresetProvider {
     function reprBuilder(plugin: PluginContext, params: CommonParams, structure?: Structure): {
         update: import("../../../mol-state/state/builder").StateBuilder.Root;
         builder: import("./representation").StructureRepresentationBuilder;
-        color: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
-        symmetryColor: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
+        color: "occupancy" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | "uniform" | undefined;
+        symmetryColor: "occupancy" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | "uniform" | undefined;
         typeParams: {
             quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
             ignoreHydrogens: boolean;

package/lib/mol-plugin-state/builder/structure/representation-preset.js CHANGED Viewed

@@ -437,7 +437,7 @@ export function presetStaticComponent(plugin, structure, type, params) {
     return plugin.builders.structure.tryCreateComponentStatic(structure, type, params);
 }
 export function presetSelectionComponent(plugin, structure, query, params) {
-    return plugin.builders.structure.tryCreateComponentFromSelection(structure, Q[query], "selection-" + query, params);
+    return plugin.builders.structure.tryCreateComponentFromSelection(structure, Q[query], "selection-".concat(query), params);
 }
 export var PresetStructureRepresentations = {
     empty: empty,

package/lib/mol-plugin-state/builder/structure/representation-preset.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/builder/structure/representation.js CHANGED Viewed

@@ -86,7 +86,7 @@ var StructureRepresentationBuilder = /** @class */ (function () {
     };
     StructureRepresentationBuilder.prototype.registerPreset = function (provider) {
         if (this.providerMap.has(provider.id)) {
-            throw new Error("Representation provider with id '" + provider.id + "' already registered.");
+            throw new Error("Representation provider with id '".concat(provider.id, "' already registered."));
         }
         this._providers.push(provider);
         this.providerMap.set(provider.id, provider);
@@ -114,7 +114,7 @@ var StructureRepresentationBuilder = /** @class */ (function () {
             : {});
         var defaults = this.plugin.config.get(PluginConfig.Structure.DefaultRepresentationPresetParams);
         prms = PD.merge(pd, defaults, prms);
-        var task = Task.create("" + provider.display.name, function () { return provider.apply(cell, prms, _this.plugin); });
+        var task = Task.create("".concat(provider.display.name), function () { return provider.apply(cell, prms, _this.plugin); });
         return this.plugin.runTask(task);
     };
     StructureRepresentationBuilder.prototype.addRepresentation = function (structure, props, options) {