molstar 2.3.6 → 2.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -2
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/docking-viewer/index.js.map +1 -1
- package/lib/apps/viewer/index.d.ts +1 -1
- package/lib/apps/viewer/index.js +3 -3
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/cli/cif2bcif/converter.js +2 -2
- package/lib/cli/cif2bcif/converter.js.map +1 -1
- package/lib/cli/cifschema/index.js +12 -12
- package/lib/cli/cifschema/index.js.map +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +20 -19
- package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/cli/cifschema/util/generate.js +21 -21
- package/lib/cli/cifschema/util/generate.js.map +1 -1
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/cli/cifschema/util/schema.js.map +1 -1
- package/lib/cli/lipid-params/index.js +3 -3
- package/lib/cli/lipid-params/index.js.map +1 -1
- package/lib/cli/state-docs/index.js +4 -4
- package/lib/cli/state-docs/index.js.map +1 -1
- package/lib/cli/state-docs/pd-to-md.js +10 -10
- package/lib/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/cli/structure-info/model.js +18 -18
- package/lib/cli/structure-info/model.js.map +1 -1
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
- package/lib/commonjs/apps/viewer/index.d.ts +8 -8
- package/lib/commonjs/apps/viewer/index.js +3 -3
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
- package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
- package/lib/commonjs/cli/cifschema/index.js +12 -12
- package/lib/commonjs/cli/cifschema/index.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +20 -19
- package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
- package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
- package/lib/commonjs/cli/lipid-params/index.js +3 -3
- package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/index.js +4 -4
- package/lib/commonjs/cli/state-docs/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
- package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/commonjs/cli/structure-info/model.js +18 -18
- package/lib/commonjs/cli/structure-info/model.js.map +1 -1
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
- package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/examples/task.js.map +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/model.js +15 -15
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/state.js +5 -5
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.js +4 -4
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
- package/lib/commonjs/extensions/g3d/data.js +2 -2
- package/lib/commonjs/extensions/g3d/data.js.map +1 -1
- package/lib/commonjs/extensions/g3d/model.js +2 -2
- package/lib/commonjs/extensions/g3d/model.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/controls.js +3 -3
- package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -0
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +28 -18
- package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +31 -2
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +87 -15
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts +1 -0
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +27 -18
- package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/ui.js +24 -20
- package/lib/commonjs/extensions/geo-export/ui.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +1 -0
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +31 -21
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +2 -2
- package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +7 -6
- package/lib/commonjs/extensions/mp4-export/ui.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +22 -21
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -11
- package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/util.js +1 -1
- package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
- package/lib/commonjs/mol-data/db/table.js +1 -1
- package/lib/commonjs/mol-data/db/table.js.map +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
- package/lib/commonjs/mol-data/int/tuple.js +1 -1
- package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +13 -1
- package/lib/commonjs/mol-geo/geometry/base.js +37 -2
- package/lib/commonjs/mol-geo/geometry/base.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +9 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +154 -35
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +7 -2
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +10 -1
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +7 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +162 -27
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +7 -2
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +10 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.js.map +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +4 -4
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js +1 -1
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
- package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/util.d.ts +25 -6
- package/lib/commonjs/mol-gl/compute/util.js +76 -21
- package/lib/commonjs/mol-gl/compute/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/image.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/points.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +16 -0
- package/lib/commonjs/mol-gl/renderable/schema.js +8 -0
- package/lib/commonjs/mol-gl/renderable/schema.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/text.d.ts +8 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +22 -13
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/renderer.js +3 -0
- package/lib/commonjs/mol-gl/renderer.js.map +1 -1
- package/lib/commonjs/mol-gl/scene.js +1 -1
- package/lib/commonjs/mol-gl/scene.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js.map +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +8 -8
- package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
- package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
- package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +2 -2
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +14 -12
- package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +2 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
- package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
- package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
- package/lib/commonjs/mol-gl/webgl/state.js +25 -1
- package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
- package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/vertex-array.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/vertex-array.js +9 -2
- package/lib/commonjs/mol-gl/webgl/vertex-array.js.map +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
- package/lib/commonjs/mol-io/common/typed-array.d.ts +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
- package/lib/commonjs/mol-io/reader/_spec/sdf.spec.js +51 -0
- package/lib/commonjs/mol-io/reader/_spec/sdf.spec.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +15 -5
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +4 -4
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
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- package/lib/servers/model/server/query.js +10 -10
- package/lib/servers/model/server/query.js.map +1 -1
- package/lib/servers/model/server/structure-wrapper.js +6 -6
- package/lib/servers/model/server/structure-wrapper.js.map +1 -1
- package/lib/servers/model/server.js +3 -3
- package/lib/servers/model/server.js.map +1 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +4 -4
- package/lib/servers/model/utils/fetch-props-pdbe.js.map +1 -1
- package/lib/servers/model/utils/writer.js +2 -2
- package/lib/servers/model/utils/writer.js.map +1 -1
- package/lib/servers/plugin-state/api-schema.js +2 -2
- package/lib/servers/plugin-state/api-schema.js.map +1 -1
- package/lib/servers/plugin-state/index.js +1 -1
- package/lib/servers/plugin-state/index.js.map +1 -1
- package/lib/servers/volume/pack/format/dsn6.js +1 -1
- package/lib/servers/volume/pack/format/dsn6.js.map +1 -1
- package/lib/servers/volume/pack/main.js +4 -4
- package/lib/servers/volume/pack/main.js.map +1 -1
- package/lib/servers/volume/pack/writer.js +1 -1
- package/lib/servers/volume/pack/writer.js.map +1 -1
- package/lib/servers/volume/pack.js +1 -1
- package/lib/servers/volume/pack.js.map +1 -1
- package/lib/servers/volume/server/api.js +7 -7
- package/lib/servers/volume/server/api.js.map +1 -1
- package/lib/servers/volume/server/local-api.js +1 -1
- package/lib/servers/volume/server/local-api.js.map +1 -1
- package/lib/servers/volume/server/query/encode.js +3 -3
- package/lib/servers/volume/server/query/encode.js.map +1 -1
- package/lib/servers/volume/server/query/execute.js +5 -5
- package/lib/servers/volume/server/query/execute.js.map +1 -1
- package/lib/servers/volume/server/version.js +1 -1
- package/lib/servers/volume/server/version.js.map +1 -1
- package/lib/servers/volume/server/web-api.js +7 -7
- package/lib/servers/volume/server/web-api.js.map +1 -1
- package/lib/servers/volume/server/web-schema.js +6 -6
- package/lib/servers/volume/server/web-schema.js.map +1 -1
- package/lib/servers/volume/server.js +2 -2
- package/lib/servers/volume/server.js.map +1 -1
- package/lib/tests/browser/font-atlas.js +1 -1
- package/lib/tests/browser/font-atlas.js.map +1 -1
- package/lib/tests/browser/render-shape.js +1 -1
- package/lib/tests/browser/render-shape.js.map +1 -1
- package/lib/tests/browser/render-structure.js +1 -1
- package/lib/tests/browser/render-structure.js.map +1 -1
- package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
- package/package.json +29 -30
- package/CHANGELOG.md +0 -191
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@@ -16,6 +16,7 @@ import { Overpaint } from '../mol-theme/overpaint';
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import { Interval } from '../mol-data/int';
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import { Transparency } from '../mol-theme/transparency';
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import { Clipping } from '../mol-theme/clipping';
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import { Geometry } from '../mol-geo/geometry/geometry';
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export interface VisualContext {
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readonly runtime: RuntimeContext;
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readonly webgl?: WebGLContext;
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@@ -25,6 +26,7 @@ interface Visual<D, P extends PD.Params> {
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/** Number of addressable groups in all instances of the visual */
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readonly groupCount: number;
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readonly renderObject: GraphicsRenderObject | undefined;
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readonly geometryVersion: number;
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createOrUpdate: (ctx: VisualContext, theme: Theme, props: PD.Values<P>, data?: D) => Promise<void> | void;
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getLoci: (pickingId: PickingId) => Loci;
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mark: (loci: Loci, action: MarkerAction) => boolean;
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@@ -33,26 +35,32 @@ interface Visual<D, P extends PD.Params> {
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setPickable: (pickable: boolean) => void;
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setColorOnly: (colorOnly: boolean) => void;
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setTransform: (matrix?: Mat4, instanceMatrices?: Float32Array | null) => void;
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setOverpaint: (overpaint: Overpaint) => void;
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setTransparency: (transparency: Transparency) => void;
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setOverpaint: (overpaint: Overpaint, webgl?: WebGLContext) => void;
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setTransparency: (transparency: Transparency, webgl?: WebGLContext) => void;
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setClipping: (clipping: Clipping) => void;
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destroy: () => void;
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mustRecreate?: (data: D, props: PD.Values<P>, webgl?: WebGLContext) => boolean;
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}
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declare namespace Visual {
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type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
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function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
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function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
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function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
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function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
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type PreviousMark = {
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export type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
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export function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
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export function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
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export function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
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export function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
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export type PreviousMark = {
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loci: Loci;
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action: MarkerAction;
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status: MarkerInfo['status'];
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};
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function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
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export function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
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type SmoothingContext = {
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geometry: Geometry;
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props: PD.Values<any>;
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webgl?: WebGLContext;
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};
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export function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
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export function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
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export function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
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export function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
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export {};
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}
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@@ -17,6 +17,9 @@ var int_1 = require("../mol-data/int");
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var transparency_data_1 = require("../mol-geo/geometry/transparency-data");
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var clipping_data_1 = require("../mol-geo/geometry/clipping-data");
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var marker_data_1 = require("../mol-geo/geometry/marker-data");
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var base_1 = require("../mol-geo/geometry/base");
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var color_smoothing_1 = require("../mol-geo/geometry/mesh/color-smoothing");
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var color_smoothing_2 = require("../mol-geo/geometry/texture-mesh/color-smoothing");
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var Visual;
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(function (Visual) {
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function setVisibility(renderObject, visible) {
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@@ -106,10 +109,10 @@ var Visual;
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return changed;
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}
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Visual.mark = mark;
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function setOverpaint(renderObject, overpaint, lociApply, clear) {
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function setOverpaint(renderObject, overpaint, lociApply, clear, smoothing) {
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if (!renderObject)
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return;
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var _a = renderObject.values, tOverpaint = _a.tOverpaint, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
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var _a = renderObject.values, tOverpaint = _a.tOverpaint, dOverpaintType = _a.dOverpaintType, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
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var count = uGroupCount.ref.value * instanceCount.ref.value;
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// ensure texture has right size
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(0, overpaint_data_1.createOverpaint)(overpaint.layers.length ? count : 0, renderObject.values);
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@@ -118,7 +121,7 @@ var Visual;
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if (clear)
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(0, overpaint_data_1.clearOverpaint)(array, 0, count);
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var _loop_1 = function (i, il) {
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var
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var _d = overpaint.layers[i], loci = _d.loci, color = _d.color, clear_1 = _d.clear;
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var apply = function (interval) {
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var start = int_1.Interval.start(interval);
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var end = int_1.Interval.end(interval);
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@@ -132,12 +135,34 @@ var Visual;
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_loop_1(i, il);
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}
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mol_util_1.ValueCell.update(tOverpaint, tOverpaint.ref.value);
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mol_util_1.ValueCell.updateIfChanged(dOverpaintType, 'groupInstance');
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if (overpaint.layers.length === 0)
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return;
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if (smoothing && (0, base_1.hasColorSmoothingProp)(smoothing.props)) {
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var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
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if (geometry.kind === 'mesh') {
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var _b = geometry.meta, resolution = _b.resolution, overpaintTexture = _b.overpaintTexture;
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var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
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if (csp) {
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(0, color_smoothing_1.applyMeshOverpaintSmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
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geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
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}
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}
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else if (webgl && geometry.kind === 'texture-mesh') {
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var _c = geometry.meta, resolution = _c.resolution, overpaintTexture = _c.overpaintTexture;
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var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
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if (csp) {
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(0, color_smoothing_2.applyTextureMeshOverpaintSmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
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geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
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}
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}
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}
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}
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Visual.setOverpaint = setOverpaint;
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function setTransparency(renderObject, transparency, lociApply, clear) {
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function setTransparency(renderObject, transparency, lociApply, clear, smoothing) {
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if (!renderObject)
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return;
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var _a = renderObject.values, tTransparency = _a.tTransparency, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
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var _a = renderObject.values, tTransparency = _a.tTransparency, dTransparencyType = _a.dTransparencyType, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
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var count = uGroupCount.ref.value * instanceCount.ref.value;
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// ensure texture has right size and variant
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(0, transparency_data_1.createTransparency)(transparency.layers.length ? count : 0, renderObject.values);
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if (clear)
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(0, transparency_data_1.clearTransparency)(array, 0, count);
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var _loop_2 = function (i, il) {
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var
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var _d = transparency.layers[i], loci = _d.loci, value = _d.value;
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var apply = function (interval) {
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var start = int_1.Interval.start(interval);
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var end = int_1.Interval.end(interval);
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}
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mol_util_1.ValueCell.update(tTransparency, tTransparency.ref.value);
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mol_util_1.ValueCell.updateIfChanged(transparencyAverage, (0, transparency_data_1.getTransparencyAverage)(array, count));
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mol_util_1.ValueCell.updateIfChanged(dTransparencyType, 'groupInstance');
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if (transparency.layers.length === 0)
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return;
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if (smoothing && (0, base_1.hasColorSmoothingProp)(smoothing.props)) {
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var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
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if (geometry.kind === 'mesh') {
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var _b = geometry.meta, resolution = _b.resolution, transparencyTexture = _b.transparencyTexture;
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var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
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if (csp) {
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(0, color_smoothing_1.applyMeshTransparencySmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
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geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
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}
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}
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else if (webgl && geometry.kind === 'texture-mesh') {
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var _c = geometry.meta, resolution = _c.resolution, transparencyTexture = _c.transparencyTexture;
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var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
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if (csp) {
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(0, color_smoothing_2.applyTextureMeshTransparencySmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
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geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
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}
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}
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}
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}
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Visual.setTransparency = setTransparency;
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function setClipping(renderObject, clipping, lociApply, clear) {
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@@ -1 +1 @@
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1
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@@ -208,7 +208,7 @@ export declare const IsosurfaceWireframeParams: {
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export declare type IsosurfaceWireframeParams = typeof IsosurfaceWireframeParams;
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export declare function IsosurfaceWireframeVisual(materialId: number): VolumeVisual<IsosurfaceWireframeParams>;
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export declare const IsosurfaceParams: {
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-
visuals: PD.MultiSelect<"
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+
visuals: PD.MultiSelect<"solid" | "wireframe">;
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quality: {
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isEssential: boolean;
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type: "select";
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@@ -266,7 +266,7 @@ export declare const IsosurfaceParams: {
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};
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export declare type IsosurfaceParams = typeof IsosurfaceParams;
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export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: Volume): {
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269
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-
visuals: PD.MultiSelect<"
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269
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+
visuals: PD.MultiSelect<"solid" | "wireframe">;
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270
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quality: {
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271
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isEssential: boolean;
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type: "select";
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@@ -325,7 +325,7 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
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325
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export declare type IsosurfaceRepresentation = VolumeRepresentation<IsosurfaceParams>;
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export declare function IsosurfaceRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Volume, IsosurfaceParams>): IsosurfaceRepresentation;
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export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvider<{
|
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-
visuals: PD.MultiSelect<"
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+
visuals: PD.MultiSelect<"solid" | "wireframe">;
|
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quality: {
|
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isEssential: boolean;
|
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331
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type: "select";
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@@ -11,7 +11,7 @@ export declare class VolumeRepresentationRegistry extends RepresentationRegistry
|
|
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11
11
|
export declare namespace VolumeRepresentationRegistry {
|
|
12
12
|
export const BuiltIn: {
|
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13
13
|
isosurface: import("./representation").VolumeRepresentationProvider<{
|
|
14
|
-
visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"
|
|
14
|
+
visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"solid" | "wireframe">;
|
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15
15
|
quality: {
|
|
16
16
|
isEssential: boolean;
|
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type: "select";
|
|
@@ -114,7 +114,7 @@ export declare namespace VolumeRepresentationRegistry {
|
|
|
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|
relativeValue: number;
|
|
115
115
|
}>, number>;
|
|
116
116
|
}>;
|
|
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|
-
interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"
|
|
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|
+
interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
|
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118
118
|
alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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|
}, "slice">;
|
|
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|
'direct-volume': import("./representation").VolumeRepresentationProvider<{
|
|
@@ -18,7 +18,7 @@ var VolumeRepresentationRegistry = /** @class */ (function (_super) {
|
|
|
18
18
|
var _this = _super.call(this) || this;
|
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19
|
(0, object_1.objectForEach)(VolumeRepresentationRegistry.BuiltIn, function (p, k) {
|
|
20
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|
if (p.name !== k)
|
|
21
|
-
throw new Error("Fix BuiltInVolumeRepresentations to have matching names. "
|
|
21
|
+
throw new Error("Fix BuiltInVolumeRepresentations to have matching names. ".concat(p.name, " ").concat(k));
|
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22
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|
_this.add(p);
|
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|
});
|
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|
return _this;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-repr/volume/registry.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,oDAAmG;AAEnG,2CAAgE;AAChE,gDAAsD;AACtD,iCAAsD;AACtD,iDAAqE;AAErE;IAAkD,6DAAoD;IAClG;QAAA,YACI,iBAAO,SAKV;QAJG,IAAA,sBAAa,EAAC,4BAA4B,CAAC,OAAO,EAAE,UAAC,CAAC,EAAE,CAAC;YACrD,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC;gBAAE,MAAM,IAAI,KAAK,CAAC,
|
|
1
|
+
{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-repr/volume/registry.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,oDAAmG;AAEnG,2CAAgE;AAChE,gDAAsD;AACtD,iCAAsD;AACtD,iDAAqE;AAErE;IAAkD,6DAAoD;IAClG;QAAA,YACI,iBAAO,SAKV;QAJG,IAAA,sBAAa,EAAC,4BAA4B,CAAC,OAAO,EAAE,UAAC,CAAC,EAAE,CAAC;YACrD,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC;gBAAE,MAAM,IAAI,KAAK,CAAC,mEAA4D,CAAC,CAAC,IAAI,cAAI,CAAC,CAAE,CAAC,CAAC;YAC7G,KAAI,CAAC,GAAG,CAAC,CAAQ,CAAC,CAAC;QACvB,CAAC,CAAC,CAAC;;IACP,CAAC;IACL,mCAAC;AAAD,CAAC,AARD,CAAkD,uCAAsB,GAQvE;AARY,oEAA4B;AAUzC,WAAiB,4BAA4B;IAC5B,oCAAO,GAAG;QACnB,YAAY,EAAE,6CAAgC;QAC9C,OAAO,EAAE,mCAA2B;QACpC,eAAe,EAAE,kDAAkC;KACtD,CAAC;AAKN,CAAC,EAVgB,4BAA4B,GAA5B,oCAA4B,KAA5B,oCAA4B,QAU5C;AApBY,oEAA4B"}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
/**
|
|
3
|
-
* Copyright (c) 2018-
|
|
3
|
+
* Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
4
4
|
*
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
6
6
|
*/
|
|
@@ -45,6 +45,7 @@ function VolumeVisual(builder, materialId) {
|
|
|
45
45
|
var currentTheme = theme_1.Theme.createEmpty();
|
|
46
46
|
var currentVolume;
|
|
47
47
|
var geometry;
|
|
48
|
+
var geometryVersion = -1;
|
|
48
49
|
var locationIt;
|
|
49
50
|
var positionIt;
|
|
50
51
|
function prepareUpdate(theme, props, volume) {
|
|
@@ -116,8 +117,10 @@ function VolumeVisual(builder, materialId) {
|
|
|
116
117
|
currentProps = newProps;
|
|
117
118
|
currentTheme = newTheme;
|
|
118
119
|
currentVolume = newVolume;
|
|
119
|
-
if (newGeometry)
|
|
120
|
+
if (newGeometry) {
|
|
120
121
|
geometry = newGeometry;
|
|
122
|
+
geometryVersion += 1;
|
|
123
|
+
}
|
|
121
124
|
}
|
|
122
125
|
function lociApply(loci, apply) {
|
|
123
126
|
if ((0, loci_1.isEveryLoci)(loci)) {
|
|
@@ -130,6 +133,7 @@ function VolumeVisual(builder, materialId) {
|
|
|
130
133
|
return {
|
|
131
134
|
get groupCount() { return locationIt ? locationIt.count : 0; },
|
|
132
135
|
get renderObject() { return renderObject; },
|
|
136
|
+
get geometryVersion() { return geometryVersion; },
|
|
133
137
|
createOrUpdate: function (ctx, theme, props, volume) {
|
|
134
138
|
if (props === void 0) { props = {}; }
|
|
135
139
|
return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
|
|
@@ -196,6 +200,7 @@ function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci) {
|
|
|
196
200
|
var version = 0;
|
|
197
201
|
var webgl = ctx.webgl;
|
|
198
202
|
var updated = new rxjs_1.Subject();
|
|
203
|
+
var geometryState = new representation_1.Representation.GeometryState();
|
|
199
204
|
var materialId = (0, render_object_1.getNextMaterialId)();
|
|
200
205
|
var renderObjects = [];
|
|
201
206
|
var _state = representation_1.Representation.createState();
|
|
@@ -237,8 +242,11 @@ function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci) {
|
|
|
237
242
|
case 2:
|
|
238
243
|
// update list of renderObjects
|
|
239
244
|
renderObjects.length = 0;
|
|
240
|
-
if (visual && visual.renderObject)
|
|
245
|
+
if (visual && visual.renderObject) {
|
|
241
246
|
renderObjects.push(visual.renderObject);
|
|
247
|
+
geometryState.add(visual.renderObject.id, visual.geometryVersion);
|
|
248
|
+
}
|
|
249
|
+
geometryState.snapshot();
|
|
242
250
|
// increment version
|
|
243
251
|
updated.next(version++);
|
|
244
252
|
return [2 /*return*/];
|
|
@@ -280,6 +288,7 @@ function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci) {
|
|
|
280
288
|
get params() { return _params; },
|
|
281
289
|
get state() { return _state; },
|
|
282
290
|
get theme() { return _theme; },
|
|
291
|
+
get geometryVersion() { return geometryState.version; },
|
|
283
292
|
renderObjects: renderObjects,
|
|
284
293
|
updated: updated,
|
|
285
294
|
createOrUpdate: createOrUpdate,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"representation.js","sourceRoot":"","sources":["../../../../src/mol-repr/volume/representation.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,oEAAwE;AACxE,oCAAkD;AAClD,iDAAgD;AAChD,4DAA0E;AAE1E,+CAA8C;AAC9C,wEAAgF;AAChF,4DAAyG;AAEzG,6CAAoE;AACpE,0CAA8C;AAC9C,gCAA6D;AAC7D,+CAAmD;AACnD,2CAA2C;AAC3C,8DAA+D;AAC/D,gEAAiE;AAKjE,oDAA8H;AAC9H,oDAA2D;AAC3D,6BAA+B;AAC/B,2CAAsC;AAItC,4DAA4D;AAI5D,SAAS,wBAAwB,CAAqB,MAAc,EAAE,QAAW,EAAE,UAA4B,EAAE,KAAY,EAAE,KAAoC,EAAE,UAAkB;IAC7K,IAAA,KAA0C,mBAAQ,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAnE,YAAY,kBAAA,EAAE,qBAAqB,2BAAgC,CAAC;IAC5E,IAAM,SAAS,GAAG,IAAA,wCAAuB,GAAE,CAAC;IAC5C,IAAM,MAAM,GAAG,YAAY,CAAC,QAAQ,EAAE,SAAS,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;IAC3E,IAAM,KAAK,GAAG,qBAAqB,CAAC,KAAK,CAAC,CAAC;IAC3C,OAAO,IAAA,kCAAkB,EAAC,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;AACxE,CAAC;AAiBD,SAAgB,YAAY,CAAkE,OAA0C,EAAE,UAAkB;IAChJ,IAAA,YAAY,GAA2G,OAAO,aAAlH,EAAE,cAAc,GAA2F,OAAO,eAAlG,EAAE,sBAAsB,GAAmE,OAAO,uBAA1E,EAAE,OAAO,GAA0D,OAAO,QAAjE,EAAE,YAAY,GAA4C,OAAO,aAAnD,EAAE,cAAc,GAA4B,OAAO,eAAnC,EAAE,YAAY,GAAc,OAAO,aAArB,EAAE,OAAO,GAAK,OAAO,QAAZ,CAAa;IACjI,IAAA,KAAwF,OAAO,CAAC,aAAa,EAA3G,YAAY,kBAAA,EAAE,oBAAoB,0BAAA,EAAE,qBAAqB,2BAAA,EAAE,sBAAsB,4BAA0B,CAAC;IACpH,IAAM,WAAW,GAAG,wBAAiB,CAAC,MAAM,EAAE,CAAC;IAE/C,IAAI,YAAyD,CAAC;IAE9D,IAAI,QAAsB,CAAC;IAC3B,IAAI,QAAe,CAAC;IACpB,IAAI,SAAiB,CAAC;IAEtB,IAAI,YAAY,GAAiB,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,YAAY,CAAC,CAAC;IACjE,IAAI,YAAY,GAAU,aAAK,CAAC,WAAW,EAAE,CAAC;IAC9C,IAAI,aAAqB,CAAC;IAE1B,IAAI,QAAW,CAAC;IAChB,IAAI,UAA4B,CAAC;IACjC,IAAI,UAA4B,CAAC;IAEjC,SAAS,aAAa,CAAC,KAAY,EAAE,KAA4B,EAAE,MAAc;QAC7E,IAAI,CAAC,MAAM,IAAI,CAAC,aAAa,EAAE;YAC3B,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAC;SACrC;QAED,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;QAClD,QAAQ,GAAG,KAAK,CAAC;QACjB,SAAS,GAAG,MAAM,CAAC;QAEnB,wBAAiB,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;QAErC,IAAI,CAAC,YAAY,EAAE;YACf,WAAW,CAAC,SAAS,GAAG,IAAI,CAAC;SAChC;aAAM,IAAI,CAAC,aAAa,IAAI,CAAC,eAAM,CAAC,aAAa,CAAC,SAAS,EAAE,aAAa,CAAC,EAAE;YAC1E,WAAW,CAAC,SAAS,GAAG,IAAI,CAAC;SAChC;QAED,IAAI,WAAW,CAAC,SAAS,EAAE;YACvB,WAAW,CAAC,cAAc,GAAG,IAAI,CAAC;YAClC,OAAO;SACV;QAED,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;QAEpF,IAAI,CAAC,kBAAU,CAAC,QAAQ,CAAC,KAAK,CAAC,KAAK,EAAE,YAAY,CAAC,KAAK,CAAC;YAAE,WAAW,CAAC,WAAW,GAAG,IAAI,CAAC;QAE1F,IAAI,WAAW,CAAC,cAAc,EAAE;YAC5B,WAAW,CAAC,WAAW,GAAG,IAAI,CAAC;SAClC;IACL,CAAC;IAED,SAAS,MAAM,CAAC,WAAe;QAC3B,IAAI,WAAW,CAAC,SAAS,EAAE;YACvB,UAAU,GAAG,sBAAsB,CAAC,SAAS,CAAC,CAAC;YAC/C,IAAI,WAAW,EAAE;gBACb,YAAY,GAAG,wBAAwB,CAAC,SAAS,EAAE,WAAW,EAAE,UAAU,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;gBAC5G,UAAU,GAAG,sBAAsB,CAAC,WAAW,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;aACzE;iBAAM;gBACH,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;aACpD;SACJ;aAAM;YACH,IAAI,CAAC,YAAY,EAAE;gBACf,MAAM,IAAI,KAAK,CAAC,uCAAuC,CAAC,CAAC;aAC5D;YAED,UAAU,CAAC,KAAK,EAAE,CAAC;YAEnB,IAAI,WAAW,CAAC,cAAc,EAAE;gBAC5B,IAAI,WAAW,EAAE;oBACb,oBAAS,CAAC,eAAe,CAAC,YAAY,CAAC,MAAM,CAAC,SAAS,EAAE,mBAAQ,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC,CAAC;oBAC7F,oBAAS,CAAC,eAAe,CAAC,YAAY,CAAC,MAAM,CAAC,YAAY,EAAE,mBAAQ,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC;iBACrG;qBAAM;oBACH,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;iBACpD;aACJ;YAED,IAAI,WAAW,CAAC,eAAe,IAAI,WAAW,CAAC,cAAc,EAAE;gBAC3D,oBAAoB,CAAC,YAAY,CAAC,MAAM,EAAE,WAAW,IAAI,QAAQ,CAAC,CAAC;gBACnE,UAAU,GAAG,sBAAsB,CAAC,WAAW,IAAI,QAAQ,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;aACrF;YAED,IAAI,WAAW,CAAC,UAAU,EAAE;gBACxB,mDAAmD;gBACnD,IAAI,OAAO,IAAI,YAAY,CAAC,MAAM,EAAE;oBAChC,IAAA,uBAAW,EAAC,UAAU,EAAE,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC,MAAoB,CAAC,CAAC;iBAC7E;aACJ;YAED,IAAI,WAAW,CAAC,WAAW,EAAE;gBACzB,IAAA,yBAAY,EAAC,UAAU,EAAE,UAAU,EAAE,QAAQ,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;aAC7E;YAED,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;YAC5C,qBAAqB,CAAC,YAAY,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;SACvD;QAED,YAAY,GAAG,QAAQ,CAAC;QACxB,YAAY,GAAG,QAAQ,CAAC;QACxB,aAAa,GAAG,SAAS,CAAC;QAC1B,IAAI,WAAW;
|
|
1
|
+
{"version":3,"file":"representation.js","sourceRoot":"","sources":["../../../../src/mol-repr/volume/representation.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,oEAAwE;AACxE,oCAAkD;AAClD,iDAAgD;AAChD,4DAA0E;AAE1E,+CAA8C;AAC9C,wEAAgF;AAChF,4DAAyG;AAEzG,6CAAoE;AACpE,0CAA8C;AAC9C,gCAA6D;AAC7D,+CAAmD;AACnD,2CAA2C;AAC3C,8DAA+D;AAC/D,gEAAiE;AAKjE,oDAA8H;AAC9H,oDAA2D;AAC3D,6BAA+B;AAC/B,2CAAsC;AAItC,4DAA4D;AAI5D,SAAS,wBAAwB,CAAqB,MAAc,EAAE,QAAW,EAAE,UAA4B,EAAE,KAAY,EAAE,KAAoC,EAAE,UAAkB;IAC7K,IAAA,KAA0C,mBAAQ,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAnE,YAAY,kBAAA,EAAE,qBAAqB,2BAAgC,CAAC;IAC5E,IAAM,SAAS,GAAG,IAAA,wCAAuB,GAAE,CAAC;IAC5C,IAAM,MAAM,GAAG,YAAY,CAAC,QAAQ,EAAE,SAAS,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;IAC3E,IAAM,KAAK,GAAG,qBAAqB,CAAC,KAAK,CAAC,CAAC;IAC3C,OAAO,IAAA,kCAAkB,EAAC,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;AACxE,CAAC;AAiBD,SAAgB,YAAY,CAAkE,OAA0C,EAAE,UAAkB;IAChJ,IAAA,YAAY,GAA2G,OAAO,aAAlH,EAAE,cAAc,GAA2F,OAAO,eAAlG,EAAE,sBAAsB,GAAmE,OAAO,uBAA1E,EAAE,OAAO,GAA0D,OAAO,QAAjE,EAAE,YAAY,GAA4C,OAAO,aAAnD,EAAE,cAAc,GAA4B,OAAO,eAAnC,EAAE,YAAY,GAAc,OAAO,aAArB,EAAE,OAAO,GAAK,OAAO,QAAZ,CAAa;IACjI,IAAA,KAAwF,OAAO,CAAC,aAAa,EAA3G,YAAY,kBAAA,EAAE,oBAAoB,0BAAA,EAAE,qBAAqB,2BAAA,EAAE,sBAAsB,4BAA0B,CAAC;IACpH,IAAM,WAAW,GAAG,wBAAiB,CAAC,MAAM,EAAE,CAAC;IAE/C,IAAI,YAAyD,CAAC;IAE9D,IAAI,QAAsB,CAAC;IAC3B,IAAI,QAAe,CAAC;IACpB,IAAI,SAAiB,CAAC;IAEtB,IAAI,YAAY,GAAiB,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,YAAY,CAAC,CAAC;IACjE,IAAI,YAAY,GAAU,aAAK,CAAC,WAAW,EAAE,CAAC;IAC9C,IAAI,aAAqB,CAAC;IAE1B,IAAI,QAAW,CAAC;IAChB,IAAI,eAAe,GAAG,CAAC,CAAC,CAAC;IACzB,IAAI,UAA4B,CAAC;IACjC,IAAI,UAA4B,CAAC;IAEjC,SAAS,aAAa,CAAC,KAAY,EAAE,KAA4B,EAAE,MAAc;QAC7E,IAAI,CAAC,MAAM,IAAI,CAAC,aAAa,EAAE;YAC3B,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAC;SACrC;QAED,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;QAClD,QAAQ,GAAG,KAAK,CAAC;QACjB,SAAS,GAAG,MAAM,CAAC;QAEnB,wBAAiB,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;QAErC,IAAI,CAAC,YAAY,EAAE;YACf,WAAW,CAAC,SAAS,GAAG,IAAI,CAAC;SAChC;aAAM,IAAI,CAAC,aAAa,IAAI,CAAC,eAAM,CAAC,aAAa,CAAC,SAAS,EAAE,aAAa,CAAC,EAAE;YAC1E,WAAW,CAAC,SAAS,GAAG,IAAI,CAAC;SAChC;QAED,IAAI,WAAW,CAAC,SAAS,EAAE;YACvB,WAAW,CAAC,cAAc,GAAG,IAAI,CAAC;YAClC,OAAO;SACV;QAED,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;QAEpF,IAAI,CAAC,kBAAU,CAAC,QAAQ,CAAC,KAAK,CAAC,KAAK,EAAE,YAAY,CAAC,KAAK,CAAC;YAAE,WAAW,CAAC,WAAW,GAAG,IAAI,CAAC;QAE1F,IAAI,WAAW,CAAC,cAAc,EAAE;YAC5B,WAAW,CAAC,WAAW,GAAG,IAAI,CAAC;SAClC;IACL,CAAC;IAED,SAAS,MAAM,CAAC,WAAe;QAC3B,IAAI,WAAW,CAAC,SAAS,EAAE;YACvB,UAAU,GAAG,sBAAsB,CAAC,SAAS,CAAC,CAAC;YAC/C,IAAI,WAAW,EAAE;gBACb,YAAY,GAAG,wBAAwB,CAAC,SAAS,EAAE,WAAW,EAAE,UAAU,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;gBAC5G,UAAU,GAAG,sBAAsB,CAAC,WAAW,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;aACzE;iBAAM;gBACH,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;aACpD;SACJ;aAAM;YACH,IAAI,CAAC,YAAY,EAAE;gBACf,MAAM,IAAI,KAAK,CAAC,uCAAuC,CAAC,CAAC;aAC5D;YAED,UAAU,CAAC,KAAK,EAAE,CAAC;YAEnB,IAAI,WAAW,CAAC,cAAc,EAAE;gBAC5B,IAAI,WAAW,EAAE;oBACb,oBAAS,CAAC,eAAe,CAAC,YAAY,CAAC,MAAM,CAAC,SAAS,EAAE,mBAAQ,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC,CAAC;oBAC7F,oBAAS,CAAC,eAAe,CAAC,YAAY,CAAC,MAAM,CAAC,YAAY,EAAE,mBAAQ,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC;iBACrG;qBAAM;oBACH,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;iBACpD;aACJ;YAED,IAAI,WAAW,CAAC,eAAe,IAAI,WAAW,CAAC,cAAc,EAAE;gBAC3D,oBAAoB,CAAC,YAAY,CAAC,MAAM,EAAE,WAAW,IAAI,QAAQ,CAAC,CAAC;gBACnE,UAAU,GAAG,sBAAsB,CAAC,WAAW,IAAI,QAAQ,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;aACrF;YAED,IAAI,WAAW,CAAC,UAAU,EAAE;gBACxB,mDAAmD;gBACnD,IAAI,OAAO,IAAI,YAAY,CAAC,MAAM,EAAE;oBAChC,IAAA,uBAAW,EAAC,UAAU,EAAE,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC,MAAoB,CAAC,CAAC;iBAC7E;aACJ;YAED,IAAI,WAAW,CAAC,WAAW,EAAE;gBACzB,IAAA,yBAAY,EAAC,UAAU,EAAE,UAAU,EAAE,QAAQ,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;aAC7E;YAED,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;YAC5C,qBAAqB,CAAC,YAAY,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;SACvD;QAED,YAAY,GAAG,QAAQ,CAAC;QACxB,YAAY,GAAG,QAAQ,CAAC;QACxB,aAAa,GAAG,SAAS,CAAC;QAC1B,IAAI,WAAW,EAAE;YACb,QAAQ,GAAG,WAAW,CAAC;YACvB,eAAe,IAAI,CAAC,CAAC;SACxB;IACL,CAAC;IAED,SAAS,SAAS,CAAC,IAAU,EAAE,KAAsC;QACjE,IAAI,IAAA,kBAAW,EAAC,IAAI,CAAC,EAAE;YACnB,OAAO,KAAK,CAAC,cAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,UAAU,CAAC,UAAU,GAAG,UAAU,CAAC,aAAa,CAAC,CAAC,CAAC;SACxF;aAAM;YACH,OAAO,YAAY,CAAC,IAAI,EAAE,aAAa,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;SACjE;IACL,CAAC;IAED,OAAO;QACH,IAAI,UAAU,KAAK,OAAO,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9D,IAAI,YAAY,KAAK,OAAO,YAAY,CAAC,CAAC,CAAC;QAC3C,IAAI,eAAe,KAAK,OAAO,eAAe,CAAC,CAAC,CAAC;QAC3C,cAAc,EAApB,UAAqB,GAAkB,EAAE,KAAY,EAAE,KAAiC,EAAE,MAAe;YAAlD,sBAAA,EAAA,UAAiC;;;;oBACpF,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,IAAI,aAAa,CAAC,CAAC;oBACrD,IAAI,WAAW,CAAC,cAAc,EAAE;wBACtB,WAAW,GAAG,cAAc,CAAC,GAAG,EAAE,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;wBACjF,sBAAO,IAAA,4BAAa,EAAC,WAAW,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,EAAC;qBACtF;yBAAM;wBACH,MAAM,EAAE,CAAC;qBACZ;;;;SACJ;QACD,OAAO,EAAP,UAAQ,SAAoB;YACxB,OAAO,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,EAAE,aAAa,EAAE,YAAY,EAAE,YAAY,CAAC,EAAE,CAAC,CAAC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@@ -58,7 +58,7 @@ export declare const SliceParams: {
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relativeValue: number;
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59
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}>, number>;
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60
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}>;
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61
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-
interpolation: PD.Select<"
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61
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+
interpolation: PD.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
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62
62
|
alpha: PD.Numeric;
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63
63
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};
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64
64
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export declare type SliceParams = typeof SliceParams;
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@@ -109,7 +109,7 @@ export declare function getSliceParams(ctx: ThemeRegistryContext, volume: Volume
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relativeValue: number;
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110
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}>, number>;
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111
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}>;
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112
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-
interpolation: PD.Select<"
|
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112
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+
interpolation: PD.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
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113
113
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alpha: PD.Numeric;
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114
114
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};
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115
115
|
export declare function SliceVisual(materialId: number): VolumeVisual<SliceParams>;
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@@ -161,6 +161,6 @@ export declare const SliceRepresentationProvider: VolumeRepresentationProvider<{
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relativeValue: number;
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162
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}>, number>;
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}>;
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164
|
-
interpolation: PD.Select<"
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164
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+
interpolation: PD.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
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165
165
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alpha: PD.Numeric;
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166
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}, "slice">;
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@@ -20,7 +20,7 @@ var Writer = /** @class */ (function () {
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20
20
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this.localPrefix = ' ';
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21
21
|
};
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22
22
|
Writer.prototype.newline = function () {
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23
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-
this.value.push("\n"
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23
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+
this.value.push("\n".concat(this._prefix).concat(this.localPrefix));
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24
24
|
this.currentLineLength = 0;
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25
25
|
};
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26
26
|
Writer.prototype.push = function () {
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@@ -64,13 +64,13 @@ var Writer = /** @class */ (function () {
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64
64
|
function _format(e, writer) {
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65
65
|
if (isLiteral(e)) {
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66
66
|
if (typeof e === 'string' && (/\s/.test(e) || !e.length))
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67
|
-
writer.append("`"
|
|
67
|
+
writer.append("`".concat(e, "`"));
|
|
68
68
|
else
|
|
69
|
-
writer.append(""
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|
69
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+
writer.append("".concat(e));
|
|
70
70
|
return;
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71
71
|
}
|
|
72
72
|
if (isSymbol(e)) {
|
|
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|
-
writer.append(""
|
|
73
|
+
writer.append("".concat(e.name));
|
|
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74
|
return;
|
|
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75
|
}
|
|
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76
|
writer.push();
|
|
@@ -106,7 +106,7 @@ function _format(e, writer) {
|
|
|
106
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|
}
|
|
107
107
|
if (keys.length === 1 && isLiteral(e.args[keys[0]])) {
|
|
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|
writer.whitespace();
|
|
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|
-
writer.append(":"
|
|
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|
+
writer.append(":".concat(keys[0]));
|
|
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|
writer.whitespace();
|
|
111
111
|
_format(e.args[keys[0]], writer);
|
|
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|
writer.pop();
|
|
@@ -115,7 +115,7 @@ function _format(e, writer) {
|
|
|
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115
|
for (var _b = 0, keys_1 = keys; _b < keys_1.length; _b++) {
|
|
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|
var a = keys_1[_b];
|
|
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|
writer.newline();
|
|
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|
-
writer.append(":"
|
|
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|
+
writer.append(":".concat(a));
|
|
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|
writer.whitespace();
|
|
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|
_format(e.args[a], writer);
|
|
121
121
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"expression-formatter.js","sourceRoot":"","sources":["../../../../src/mol-script/language/expression-formatter.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,2CAA0C;AAElC,IAAA,SAAS,GAAiC,uBAAU,UAA3C,EAAE,QAAQ,GAAuB,uBAAU,SAAjC,EAAE,gBAAgB,GAAK,uBAAU,iBAAf,CAAgB;AAE7D;IAAA;QACY,UAAK,GAAa,EAAE,CAAC;QACrB,sBAAiB,GAAG,CAAC,CAAC;QACtB,iBAAY,GAAG,CAAC,CAAC;QACjB,YAAO,GAAW,EAAE,CAAC;QACrB,gBAAW,GAAW,EAAE,CAAC;IAiDrC,CAAC;IA/CW,yBAAQ,GAAhB;QACI,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;IAC5B,CAAC;IAED,wBAAO,GAAP;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,
|
|
1
|
+
{"version":3,"file":"expression-formatter.js","sourceRoot":"","sources":["../../../../src/mol-script/language/expression-formatter.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,2CAA0C;AAElC,IAAA,SAAS,GAAiC,uBAAU,UAA3C,EAAE,QAAQ,GAAuB,uBAAU,SAAjC,EAAE,gBAAgB,GAAK,uBAAU,iBAAf,CAAgB;AAE7D;IAAA;QACY,UAAK,GAAa,EAAE,CAAC;QACrB,sBAAiB,GAAG,CAAC,CAAC;QACtB,iBAAY,GAAG,CAAC,CAAC;QACjB,YAAO,GAAW,EAAE,CAAC;QACrB,gBAAW,GAAW,EAAE,CAAC;IAiDrC,CAAC;IA/CW,yBAAQ,GAAhB;QACI,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;IAC5B,CAAC;IAED,wBAAO,GAAP;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAK,IAAI,CAAC,OAAO,SAAG,IAAI,CAAC,WAAW,CAAE,CAAC,CAAC;QACxD,IAAI,CAAC,iBAAiB,GAAG,CAAC,CAAC;IAC/B,CAAC;IAED,qBAAI,GAAJ;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrB,IAAI,CAAC,iBAAiB,GAAG,CAAC,CAAC;QAC3B,IAAI,CAAC,WAAW,GAAG,EAAE,CAAC;QACtB,IAAI,CAAC,YAAY,IAAI,CAAC,CAAC;QACvB,IAAI,CAAC,OAAO,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC9D,CAAC;IAED,oBAAG,GAAH;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrB,IAAI,CAAC,YAAY,IAAI,CAAC,CAAC;QACvB,IAAI,CAAC,OAAO,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC9D,CAAC;IAED,uBAAM,GAAN,UAAO,GAAW;QACd,IAAI,CAAC,IAAI,CAAC,iBAAiB,EAAE;YACzB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAC,MAAM,CAAC;SACvC;aAAM,IAAI,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,GAAG,EAAE,EAAE;YAC/F,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,IAAI,CAAC,iBAAiB,IAAI,GAAG,CAAC,MAAM,CAAC;SACxC;aAAM;YACH,IAAI,CAAC,QAAQ,EAAE,CAAC;YAChB,IAAI,CAAC,OAAO,EAAE,CAAC;YACf,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAC,MAAM,CAAC;SACvC;IACL,CAAC;IAED,2BAAU,GAAV;QACI,IAAI,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,GAAG,EAAE,EAAE;YAC/E,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;SACxB;IACL,CAAC;IAED,uBAAM,GAAN;QACI,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC/B,CAAC;IACL,aAAC;AAAD,CAAC,AAtDD,IAsDC;AAED,SAAS,OAAO,CAAC,CAAa,EAAE,MAAc;IAC1C,IAAI,SAAS,CAAC,CAAC,CAAC,EAAE;QACd,IAAI,OAAO,CAAC,KAAK,QAAQ,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC;YAAE,MAAM,CAAC,MAAM,CAAC,WAAK,CAAC,MAAI,CAAC,CAAC;;YAC/E,MAAM,CAAC,MAAM,CAAC,UAAG,CAAC,CAAE,CAAC,CAAC;QAC3B,OAAO;KACV;IACD,IAAI,QAAQ,CAAC,CAAC,CAAC,EAAE;QACb,MAAM,CAAC,MAAM,CAAC,UAAG,CAAC,CAAC,IAAI,CAAE,CAAC,CAAC;QAC3B,OAAO;KACV;IAED,MAAM,CAAC,IAAI,EAAE,CAAC;IACd,OAAO,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAExB,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE;QACT,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,IAAI,gBAAgB,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QAC1B,IAAI,WAAW,GAAG,IAAI,CAAC;QACvB,KAAgB,UAAM,EAAN,KAAA,CAAC,CAAC,IAAI,EAAN,cAAM,EAAN,IAAM,EAAE;YAAnB,IAAM,CAAC,SAAA;YACR,IAAI,SAAS,CAAC,CAAC,CAAC,EAAE;gBACd,IAAI,WAAW;oBAAE,MAAM,CAAC,UAAU,EAAE,CAAC;;oBAChC,MAAM,CAAC,OAAO,EAAE,CAAC;gBACtB,WAAW,GAAG,IAAI,CAAC;aACtB;iBAAM;gBACH,WAAW,GAAG,KAAK,CAAC;gBACpB,MAAM,CAAC,OAAO,EAAE,CAAC;aACpB;YACD,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;SACtB;QACD,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,IAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACjC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;QACd,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE;QACjD,MAAM,CAAC,UAAU,EAAE,CAAC;QACpB,MAAM,CAAC,MAAM,CAAC,WAAI,IAAI,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC;QAC7B,MAAM,CAAC,UAAU,EAAE,CAAC;QACpB,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;QACjC,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,KAAgB,UAAI,EAAJ,aAAI,EAAJ,kBAAI,EAAJ,IAAI,EAAE;QAAjB,IAAM,CAAC,aAAA;QACR,MAAM,CAAC,OAAO,EAAE,CAAC;QACjB,MAAM,CAAC,MAAM,CAAC,WAAI,CAAC,CAAE,CAAC,CAAC;QACvB,MAAM,CAAC,UAAU,EAAE,CAAC;QACpB,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;KAC9B;IACD,MAAM,CAAC,GAAG,EAAE,CAAC;AACjB,CAAC;AAED,SAAgB,eAAe,CAAC,CAAa;IACzC,IAAM,MAAM,GAAG,IAAI,MAAM,EAAE,CAAC;IAC5B,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;IACnB,OAAO,MAAM,CAAC,MAAM,EAAE,CAAC;AAC3B,CAAC;AAJD,0CAIC"}
|
|
@@ -24,17 +24,17 @@ exports.symbolList = symbolList;
|
|
|
24
24
|
function formatKey(key) {
|
|
25
25
|
var regex = /([a-z])([A-Z])([a-z]|$)/g;
|
|
26
26
|
// do this twice because 'xXxX'
|
|
27
|
-
return key.replace(regex, function (s, a, b, c) { return a
|
|
27
|
+
return key.replace(regex, function (s, a, b, c) { return "".concat(a, "-").concat(b.toLocaleLowerCase()).concat(c); }).replace(regex, function (s, a, b, c) { return "".concat(a, "-").concat(b.toLocaleLowerCase()).concat(c); });
|
|
28
28
|
}
|
|
29
29
|
function _normalizeTable(namespace, key, obj) {
|
|
30
30
|
if ((0, symbol_1.isSymbol)(obj)) {
|
|
31
31
|
obj.info.namespace = namespace;
|
|
32
32
|
obj.info.name = obj.info.name || formatKey(key);
|
|
33
|
-
obj.id = obj.info.namespace
|
|
33
|
+
obj.id = "".concat(obj.info.namespace, ".").concat(obj.info.name);
|
|
34
34
|
return;
|
|
35
35
|
}
|
|
36
|
-
var currentNs = ""
|
|
37
|
-
var newNs = namespace ? namespace
|
|
36
|
+
var currentNs = "".concat(obj['@namespace'] || formatKey(key));
|
|
37
|
+
var newNs = namespace ? "".concat(namespace, ".").concat(currentNs) : currentNs;
|
|
38
38
|
for (var _i = 0, _a = Object.keys(obj); _i < _a.length; _i++) {
|
|
39
39
|
var childKey = _a[_i];
|
|
40
40
|
if (typeof obj[childKey] !== 'object' && !(0, symbol_1.isSymbol)(obj[childKey]))
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"helpers.js","sourceRoot":"","sources":["../../../../src/mol-script/language/helpers.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,mCAAwD;AAExD,SAAgB,MAAM,CAA4C,IAAO,EAAE,IAAO,EAAE,WAAoB;IACpG,OAAO,IAAA,gBAAO,EAAC,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC;AAChD,CAAC;AAFD,wBAEC;AAED,SAAgB,cAAc,CAAC,KAAU;IACrC,eAAe,CAAC,EAAE,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC;AACnC,CAAC;AAFD,wCAEC;AAED,SAAgB,UAAU,CAAC,KAAU;IACjC,IAAM,IAAI,GAAc,EAAE,CAAC;IAC3B,WAAW,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IACzB,OAAO,IAAI,CAAC;AAChB,CAAC;AAJD,gCAIC;AAED,SAAS,SAAS,CAAC,GAAW;IAC1B,IAAM,KAAK,GAAG,0BAA0B,CAAC;IACzC,+BAA+B;IAC/B,OAAO,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,UAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAK,
|
|
1
|
+
{"version":3,"file":"helpers.js","sourceRoot":"","sources":["../../../../src/mol-script/language/helpers.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,mCAAwD;AAExD,SAAgB,MAAM,CAA4C,IAAO,EAAE,IAAO,EAAE,WAAoB;IACpG,OAAO,IAAA,gBAAO,EAAC,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC;AAChD,CAAC;AAFD,wBAEC;AAED,SAAgB,cAAc,CAAC,KAAU;IACrC,eAAe,CAAC,EAAE,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC;AACnC,CAAC;AAFD,wCAEC;AAED,SAAgB,UAAU,CAAC,KAAU;IACjC,IAAM,IAAI,GAAc,EAAE,CAAC;IAC3B,WAAW,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IACzB,OAAO,IAAI,CAAC;AAChB,CAAC;AAJD,gCAIC;AAED,SAAS,SAAS,CAAC,GAAW;IAC1B,IAAM,KAAK,GAAG,0BAA0B,CAAC;IACzC,+BAA+B;IAC/B,OAAO,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,UAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAK,OAAA,UAAG,CAAC,cAAI,CAAC,CAAC,iBAAiB,EAAE,SAAG,CAAC,CAAE,EAAnC,CAAmC,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,UAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAK,OAAA,UAAG,CAAC,cAAI,CAAC,CAAC,iBAAiB,EAAE,SAAG,CAAC,CAAE,EAAnC,CAAmC,CAAC,CAAC;AACvJ,CAAC;AAED,SAAS,eAAe,CAAC,SAAiB,EAAE,GAAW,EAAE,GAAQ;IAC7D,IAAI,IAAA,iBAAQ,EAAC,GAAG,CAAC,EAAE;QACf,GAAG,CAAC,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;QAC/B,GAAG,CAAC,IAAI,CAAC,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,IAAI,IAAI,SAAS,CAAC,GAAG,CAAC,CAAC;QAChD,GAAG,CAAC,EAAE,GAAG,UAAG,GAAG,CAAC,IAAI,CAAC,SAAS,cAAI,GAAG,CAAC,IAAI,CAAC,IAAI,CAAE,CAAC;QAClD,OAAO;KACV;IACD,IAAM,SAAS,GAAG,UAAG,GAAG,CAAC,YAAY,CAAC,IAAI,SAAS,CAAC,GAAG,CAAC,CAAE,CAAC;IAC3D,IAAM,KAAK,GAAG,SAAS,CAAC,CAAC,CAAC,UAAG,SAAS,cAAI,SAAS,CAAE,CAAC,CAAC,CAAC,SAAS,CAAC;IAClE,KAAuB,UAAgB,EAAhB,KAAA,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAhB,cAAgB,EAAhB,IAAgB,EAAE;QAApC,IAAM,QAAQ,SAAA;QACf,IAAI,OAAO,GAAG,CAAC,QAAQ,CAAC,KAAK,QAAQ,IAAI,CAAC,IAAA,iBAAQ,EAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAAE,SAAS;QAC5E,eAAe,CAAC,KAAK,EAAE,QAAQ,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC;KACnD;AACL,CAAC;AAED,SAAS,WAAW,CAAC,GAAQ,EAAE,IAAe;IAC1C,IAAI,IAAA,iBAAQ,EAAC,GAAG,CAAC,EAAE;QACf,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACf,OAAO;KACV;IACD,KAAuB,UAAgB,EAAhB,KAAA,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAhB,cAAgB,EAAhB,IAAgB,EAAE;QAApC,IAAM,QAAQ,SAAA;QACf,IAAI,OAAO,GAAG,CAAC,QAAQ,CAAC,KAAK,QAAQ,IAAI,CAAC,IAAA,iBAAQ,EAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAAE,SAAS;QAC5E,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,IAAI,CAAC,CAAC;KACpC;AACL,CAAC"}
|
|
@@ -101,7 +101,7 @@ var Language;
|
|
|
101
101
|
i++;
|
|
102
102
|
}
|
|
103
103
|
if (i >= _i)
|
|
104
|
-
throw new Error("There must be a value foolowed a named arg ':"
|
|
104
|
+
throw new Error("There must be a value foolowed a named arg ':".concat(name_1, "'."));
|
|
105
105
|
args[name_1] = visitExpr(nodes[i]);
|
|
106
106
|
if (isNaN(+name_1))
|
|
107
107
|
allNumeric = false;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
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1
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+
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@@ -34,10 +34,10 @@ var type = {
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34
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'@header': 'Types',
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35
35
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elementSymbol: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(type_1.Type.Str) }), Types.ElementSymbol, 'Create element symbol representation from a string value.'),
|
|
36
36
|
atomName: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(type_1.Type.AnyValue) }), Types.AtomName, 'Convert a value to an atom name.'),
|
|
37
|
-
entityType: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(Types.EntityType) }), Types.EntityType, "Create normalized representation of entity type: "
|
|
38
|
-
bondFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.BondFlag), Types.BondFlags, "Create bond flags representation from a list of strings. Allowed flags: "
|
|
37
|
+
entityType: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(Types.EntityType) }), Types.EntityType, "Create normalized representation of entity type: ".concat(type_1.Type.oneOfValues(Types.EntityType).join(', '), ".")),
|
|
38
|
+
bondFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.BondFlag), Types.BondFlags, "Create bond flags representation from a list of strings. Allowed flags: ".concat(type_1.Type.oneOfValues(Types.BondFlag).join(', '), ".")),
|
|
39
39
|
ringFingerprint: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.ElementSymbol, { nonEmpty: true }), Types.RingFingerprint, 'Create ring fingerprint from the supplied atom element list.'),
|
|
40
|
-
secondaryStructureFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.SecondaryStructureFlag), Types.SecondaryStructureFlags, "Create secondary structure flags representation from a list of strings. Allowed flags: "
|
|
40
|
+
secondaryStructureFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.SecondaryStructureFlag), Types.SecondaryStructureFlags, "Create secondary structure flags representation from a list of strings. Allowed flags: ".concat(type_1.Type.oneOfValues(Types.SecondaryStructureFlag).join(', '), ".")),
|
|
41
41
|
authResidueId: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({
|
|
42
42
|
0: (0, symbol_1.Argument)(type_1.Type.Str, { description: 'auth_asym_id' }),
|
|
43
43
|
1: (0, symbol_1.Argument)(type_1.Type.Num, { description: 'auth_seq_id' }),
|