molstar 2.3.6 → 2.4.0

package/lib/extensions/cellpack/state.js.map

@@ -1 +1 @@
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package/lib/extensions/cellpack/util.js

@@ -82,7 +82,7 @@ export function getFromPdb(plugin, pdbId, assetManager) {
         var _a, cif, asset;
         return __generator(this, function (_b) {
             switch (_b.label) {
-                case 0: return [4 /*yield*/, downloadCif(plugin, "https://models.rcsb.org/" + pdbId + ".bcif", true, assetManager)];
+                case 0: return [4 /*yield*/, downloadCif(plugin, "https://models.rcsb.org/".concat(pdbId, ".bcif"), true, assetManager)];
                 case 1:
                     _a = _b.sent(), cif = _a.cif, asset = _a.asset;
                     return [2 /*return*/, { mmcif: cif.blocks[0], asset: asset }];
@@ -96,7 +96,7 @@ export function getFromOPM(plugin, pdbId, assetManager) {
         var _a;
         return __generator(this, function (_b) {
             switch (_b.label) {
-                case 0: return [4 /*yield*/, plugin.runTask(assetManager.resolve(Asset.getUrlAsset(assetManager, "https://opm-assets.storage.googleapis.com/pdb/" + pdbId.toLowerCase() + ".pdb"), 'string'))];
+                case 0: return [4 /*yield*/, plugin.runTask(assetManager.resolve(Asset.getUrlAsset(assetManager, "https://opm-assets.storage.googleapis.com/pdb/".concat(pdbId.toLowerCase(), ".pdb")), 'string'))];
                 case 1:
                     asset = _b.sent();
                     _a = {};
@@ -114,13 +114,13 @@ export function getFromCellPackDB(plugin, id, baseUrl, assetManager) {
                 case 0:
                     if (!(id.toLowerCase().endsWith('.cif') || id.toLowerCase().endsWith('.bcif'))) return [3 /*break*/, 2];
                     isBinary = id.toLowerCase().endsWith('.bcif');
-                    return [4 /*yield*/, downloadCif(plugin, baseUrl + "/other/" + id, isBinary, assetManager)];
+                    return [4 /*yield*/, downloadCif(plugin, "".concat(baseUrl, "/other/").concat(id), isBinary, assetManager)];
                 case 1:
                     _a = _b.sent(), cif = _a.cif, asset = _a.asset;
                     return [2 /*return*/, { mmcif: cif.blocks[0], asset: asset }];
                 case 2:
                     name_1 = id.endsWith('.pdb') ? id.substring(0, id.length - 4) : id;
-                    return [4 /*yield*/, downloadPDB(plugin, baseUrl + "/other/" + name_1 + ".pdb", name_1, assetManager)];
+                    return [4 /*yield*/, downloadPDB(plugin, "".concat(baseUrl, "/other/").concat(name_1, ".pdb"), name_1, assetManager)];
                 case 3: return [2 /*return*/, _b.sent()];
             }
         });

package/lib/extensions/cellpack/util.js.map

@@ -1 +1 @@
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package/lib/extensions/dnatco/confal-pyramids/representation.d.ts

@@ -10,7 +10,7 @@ import { StructureRepresentation, StructureRepresentationProvider } from '../../
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { ThemeRegistryContext } from '../../../mol-theme/theme';
 export declare const ConfalPyramidsParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -22,7 +22,7 @@ export declare const ConfalPyramidsParams: {
 };
 export declare type ConfalPyramidsParams = typeof ConfalPyramidsParams;
 export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, structure: Structure): {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -35,7 +35,7 @@ export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, struc
 export declare type ConfalPyramidsRepresentation = StructureRepresentation<ConfalPyramidsParams>;
 export declare function ConfalPyramidsRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, ConfalPyramidsParams>): ConfalPyramidsRepresentation;
 export declare const ConfalPyramidsRepresentationProvider: StructureRepresentationProvider<{
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/extensions/dnatco/confal-pyramids/util.js

@@ -65,12 +65,12 @@ export var ConfalPyramidsUtil;
         Utility.prototype.stepToName = function (entry_id, modelNum, locFirst, locSecond, fakeAltId_1, fakeAltId_2) {
             var first = residueInfoFromLocation(locFirst);
             var second = residueInfoFromLocation(locSecond);
-            var model_id = this.hasMultipleModels ? "-m" + modelNum : '';
-            var alt_id_1 = fakeAltId_1 !== '' ? "." + fakeAltId_1 : (first.alt_id.length ? "." + first.alt_id : '');
-            var alt_id_2 = fakeAltId_2 !== '' ? "." + fakeAltId_2 : (second.alt_id.length ? "." + second.alt_id : '');
-            var ins_code_1 = first.ins_code.length ? "." + first.ins_code : '';
-            var ins_code_2 = second.ins_code.length ? "." + second.ins_code : '';
-            return "" + entry_id + model_id + "_" + first.auth_asym_id + "_" + first.comp_id + alt_id_1 + "_" + first.auth_seq_id + ins_code_1 + "_" + second.comp_id + alt_id_2 + "_" + second.auth_seq_id + ins_code_2;
+            var model_id = this.hasMultipleModels ? "-m".concat(modelNum) : '';
+            var alt_id_1 = fakeAltId_1 !== '' ? ".".concat(fakeAltId_1) : (first.alt_id.length ? ".".concat(first.alt_id) : '');
+            var alt_id_2 = fakeAltId_2 !== '' ? ".".concat(fakeAltId_2) : (second.alt_id.length ? ".".concat(second.alt_id) : '');
+            var ins_code_1 = first.ins_code.length ? ".".concat(first.ins_code) : '';
+            var ins_code_2 = second.ins_code.length ? ".".concat(second.ins_code) : '';
+            return "".concat(entry_id).concat(model_id, "_").concat(first.auth_asym_id, "_").concat(first.comp_id).concat(alt_id_1, "_").concat(first.auth_seq_id).concat(ins_code_1, "_").concat(second.comp_id).concat(alt_id_2, "_").concat(second.auth_seq_id).concat(ins_code_2);
         };
         return Utility;
     }());
@@ -97,7 +97,7 @@ export var ConfalPyramidsUtil;
                     indices.push(eI);
             }
             if (indices.length === 0)
-                throw new Error("Element " + name + " not found on residue " + residue.index);
+                throw new Error("Element ".concat(name, " not found on residue ").concat(residue.index));
             return indices;
         };
         UnitWalker.prototype.getAtomPositions = function (indices) {

package/lib/extensions/dnatco/confal-pyramids/util.js.map

@@ -1 +1 @@
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package/lib/extensions/g3d/data.js

@@ -34,7 +34,7 @@ export function getG3dDataBlock(ctx, header, urlOrData, resolution) {
             switch (_a.label) {
                 case 0:
                     if (!header.offsets[resolution])
-                        throw new Error("Resolution " + resolution + " not available.");
+                        throw new Error("Resolution ".concat(resolution, " not available."));
                     return [4 /*yield*/, getRawData(ctx, urlOrData, header.offsets[resolution])];
                 case 1:
                     data = _a.sent();
@@ -56,7 +56,7 @@ function getRawData(ctx, urlOrData, range) {
             switch (_a.label) {
                 case 0:
                     if (!(typeof urlOrData === 'string')) return [3 /*break*/, 2];
-                    return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: urlOrData, headers: [['Range', "bytes=" + range.offset + "-" + (range.offset + range.size - 1)]], type: 'binary' }))];
+                    return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: urlOrData, headers: [['Range', "bytes=".concat(range.offset, "-").concat(range.offset + range.size - 1)]], type: 'binary' }))];
                 case 1: return [2 /*return*/, _a.sent()];
                 case 2: return [2 /*return*/, urlOrData.slice(range.offset, range.offset + range.size)];
             }

package/lib/extensions/g3d/data.js.map

@@ -1 +1 @@
-{"version":3,"file":"data.js","sourceRoot":"","sources":["../../../src/extensions/g3d/data.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,oCAAoC,CAAC;AAEnE,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AA0BjD,IAAM,WAAW,GAAG,KAAK,CAAC;AAE1B,MAAM,UAAgB,YAAY,CAAC,GAAkB,EAAE,SAA8B;;;;;wBACxD,qBAAM,UAAU,CAAC,GAAG,EAAE,SAAS,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC,EAAA;;oBAArF,IAAI,GAAe,SAAkE;oBACvF,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;oBAC3B,OAAO,IAAI,IAAI,CAAC,EAAE,IAAI,EAAE,EAAE;wBACtB,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC;4BAAE,MAAM;qBAC/B;oBACK,MAAM,GAAG,aAAa,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC;oBACtD,sBAAO,MAAM,EAAC;;;;CACjB;AAED,MAAM,UAAgB,eAAe,CAAC,GAAkB,EAAE,MAAiB,EAAE,SAA8B,EAAE,UAAkB;;;;;;oBAC3H,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC;wBAAE,MAAM,IAAI,KAAK,CAAC,gBAAc,UAAU,oBAAiB,CAAC,CAAC;oBAC/E,qBAAM,UAAU,CAAC,GAAG,EAAE,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,EAAA;;oBAAnE,IAAI,GAAG,SAA4D;oBACxD,qBAAM,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,UAAA,GAAG,IAAI,OAAA,OAAO,CAAC,GAAG,EAAE,IAAI,CAAC,EAAlB,CAAkB,CAAC,CAAC,EAAA;;oBAA7E,QAAQ,GAAG,SAAkE;oBAEnF,sBAAO;4BACH,MAAM,QAAA;4BACN,UAAU,YAAA;4BACV,IAAI,EAAE,aAAa,CAAC,QAAQ,CAAC;yBAChC,EAAC;;;;CACL;AAED,SAAe,UAAU,CAAC,GAAkB,EAAE,SAA8B,EAAE,KAAuC;;;;;yBAC7G,CAAA,OAAO,SAAS,KAAK,QAAQ,CAAA,EAA7B,wBAA6B;oBACtB,qBAAM,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,WAAS,KAAK,CAAC,MAAM,UAAI,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,IAAI,GAAG,CAAC,CAAE,CAAC,CAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,EAAA;wBAAvJ,sBAAO,SAAgJ,EAAC;wBAExJ,sBAAO,SAAS,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,EAAC;;;;CAEvE"}
+{"version":3,"file":"data.js","sourceRoot":"","sources":["../../../src/extensions/g3d/data.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,oCAAoC,CAAC;AAEnE,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AA0BjD,IAAM,WAAW,GAAG,KAAK,CAAC;AAE1B,MAAM,UAAgB,YAAY,CAAC,GAAkB,EAAE,SAA8B;;;;;wBACxD,qBAAM,UAAU,CAAC,GAAG,EAAE,SAAS,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,CAAC,EAAA;;oBAArF,IAAI,GAAe,SAAkE;oBACvF,IAAI,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC;oBAC3B,OAAO,IAAI,IAAI,CAAC,EAAE,IAAI,EAAE,EAAE;wBACtB,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC;4BAAE,MAAM;qBAC/B;oBACK,MAAM,GAAG,aAAa,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC;oBACtD,sBAAO,MAAM,EAAC;;;;CACjB;AAED,MAAM,UAAgB,eAAe,CAAC,GAAkB,EAAE,MAAiB,EAAE,SAA8B,EAAE,UAAkB;;;;;;oBAC3H,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC;wBAAE,MAAM,IAAI,KAAK,CAAC,qBAAc,UAAU,oBAAiB,CAAC,CAAC;oBAC/E,qBAAM,UAAU,CAAC,GAAG,EAAE,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,EAAA;;oBAAnE,IAAI,GAAG,SAA4D;oBACxD,qBAAM,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,UAAA,GAAG,IAAI,OAAA,OAAO,CAAC,GAAG,EAAE,IAAI,CAAC,EAAlB,CAAkB,CAAC,CAAC,EAAA;;oBAA7E,QAAQ,GAAG,SAAkE;oBAEnF,sBAAO;4BACH,MAAM,QAAA;4BACN,UAAU,YAAA;4BACV,IAAI,EAAE,aAAa,CAAC,QAAQ,CAAC;yBAChC,EAAC;;;;CACL;AAED,SAAe,UAAU,CAAC,GAAkB,EAAE,SAA8B,EAAE,KAAuC;;;;;yBAC7G,CAAA,OAAO,SAAS,KAAK,QAAQ,CAAA,EAA7B,wBAA6B;oBACtB,qBAAM,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,gBAAS,KAAK,CAAC,MAAM,cAAI,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,IAAI,GAAG,CAAC,CAAE,CAAC,CAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,EAAA;wBAAvJ,sBAAO,SAAgJ,EAAC;wBAExJ,sBAAO,SAAS,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,EAAC;;;;CAEvE"}

package/lib/extensions/g3d/model.js

@@ -39,7 +39,7 @@ function getColumns(block) {
     var o = 0;
     objectForEach(data, function (hs, h) {
         objectForEach(hs, function (chs, ch) {
-            var entity_id = ch + "-" + h;
+            var entity_id = "".concat(ch, "-").concat(h);
             var l = chs.start.length;
             if (l === 0)
                 return;
@@ -202,7 +202,7 @@ export var G3dLabelProvider = {
             return;
         var eI = first.unit.elements[OrderedSet.getAt(first.indices, 0)];
         var seqId = first.unit.model.coarseHierarchy.spheres.seq_id_begin.value(eI);
-        return "<b>Start:</b> " + info.start[seqId] + " <small>| resolution " + info.resolution + "<small>";
+        return "<b>Start:</b> ".concat(info.start[seqId], " <small>| resolution ").concat(info.resolution, "<small>");
     }
 };
 //# sourceMappingURL=model.js.map

package/lib/extensions/g3d/model.js.map

@@ -1 +1 @@
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package/lib/extensions/geo-export/controls.js

@@ -39,7 +39,7 @@ var GeometryControls = /** @class */ (function (_super) {
         var uniqueIds = new Set();
         models.forEach(function (m) { return uniqueIds.add(m.entryId.toUpperCase()); });
         var idString = SetUtils.toArray(uniqueIds).join('-');
-        return "" + (idString || 'molstar-model');
+        return "".concat(idString || 'molstar-model');
     };
     GeometryControls.prototype.exportGeometry = function () {
         var _this = this;
@@ -75,7 +75,7 @@ var GeometryControls = /** @class */ (function (_super) {
                         _e.label = 1;
                     case 1:
                         if (!(i < il)) return [3 /*break*/, 5];
-                        return [4 /*yield*/, ctx.update({ message: "Exporting object " + i + "/" + il })];
+                        return [4 /*yield*/, ctx.update({ message: "Exporting object ".concat(i, "/").concat(il) })];
                     case 2:
                         _e.sent();
                         return [4 /*yield*/, renderObjectExporter.add(renderObjects[i], (_d = this.plugin.canvas3d) === null || _d === void 0 ? void 0 : _d.webgl, ctx)];
@@ -94,7 +94,7 @@ var GeometryControls = /** @class */ (function (_super) {
                             }];
                     case 7:
                         e_1 = _e.sent();
-                        this.plugin.log.error('' + e_1);
+                        this.plugin.log.error('Error during geometry export');
                         throw e_1;
                     case 8: return [2 /*return*/];
                 }

package/lib/extensions/geo-export/controls.js.map

@@ -1 +1 @@
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+{"version":3,"file":"controls.js","sourceRoot":"","sources":["../../../src/extensions/geo-export/controls.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AACjD,OAAO,EAAE,KAAK,EAAE,MAAM,yBAAyB,CAAC;AAChD,OAAO,EAAE,eAAe,EAAE,MAAM,kCAAkC,CAAC;AAEnE,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,iBAAiB,EAAE,MAAM,gCAAgC,CAAC;AACnE,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAC7C,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAC7C,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAC7C,OAAO,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AAE/C,MAAM,CAAC,IAAM,cAAc,GAAG;IAC1B,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,KAAK,EAAE;QACrB,CAAC,KAAK,EAAE,wBAAwB,CAAC;QACjC,CAAC,KAAK,EAAE,YAAY,CAAC;QACrB,CAAC,KAAK,EAAE,kBAAkB,CAAC;QAC3B,CAAC,MAAM,EAAE,qCAAqC,CAAC;KAClD,CAAC;CACL,CAAC;AAEF;IAAsC,oCAAe;IA0DjD,0BAAoB,MAAqB;QAAzC,YACI,iBAAO,SACV;QAFmB,YAAM,GAAN,MAAM,CAAe;QAzDhC,eAAS,GAAG;YACjB,MAAM,EAAE,KAAI,CAAC,EAAE,CAAC,QAAQ,CAAmC,EAAE,CAAC,gBAAgB,CAAC,cAAc,CAAC,CAAC;SAClG,CAAA;;IAyDD,CAAC;IAvDO,sCAAW,GAAnB;QACI,IAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,UAAU,CAAC,WAAW,CAAC,iBAAiB,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,GAAI,CAAC,IAAI,EAAX,CAAW,CAAC,CAAC;QAC5I,IAAM,SAAS,GAAG,IAAI,GAAG,EAAU,CAAC;QACpC,MAAM,CAAC,OAAO,CAAC,UAAA,CAAC,IAAI,OAAA,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC,EAAtC,CAAsC,CAAC,CAAC;QAC5D,IAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACvD,OAAO,UAAG,QAAQ,IAAI,eAAe,CAAE,CAAC;IAC5C,CAAC;IAED,yCAAc,GAAd;QAAA,iBA2CC;QA1CG,IAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,iBAAiB,EAAE,UAAM,GAAG;;;;;;;wBAEvC,aAAa,GAAG,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,gBAAgB,EAAG,CAAC;wBAC1D,QAAQ,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;wBAE9B,KAAK,GAAG,QAAQ,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,KAAK,CAAC,QAAQ,CAAC,KAAM,CAAC,CAAC;wBAC9D,cAAc,GAAG,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,qBAAsB,CAAC;wBAC9D,WAAW,GAAG,KAAK,CAAC,YAAY,CAAC,KAAK,EAAE,EAAE,cAAc,CAAC,CAAC;wBAC5D,oBAAoB,SAAwD,CAAC;wBACjF,QAAQ,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,EAAE;4BACxC,KAAK,KAAK;gCACN,oBAAoB,GAAG,IAAI,WAAW,CAAC,KAAK,EAAE,WAAW,CAAC,CAAC;gCAC3D,MAAM;4BACV,KAAK,KAAK;gCACN,oBAAoB,GAAG,IAAI,WAAW,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC;gCAC9D,MAAM;4BACV,KAAK,KAAK;gCACN,oBAAoB,GAAG,IAAI,WAAW,CAAC,WAAW,CAAC,CAAC;gCACpD,MAAM;4BACV,KAAK,MAAM;gCACP,oBAAoB,GAAG,IAAI,YAAY,CAAC,KAAK,EAAE,WAAW,EAAE,cAAc,CAAC,MAAM,CAAC,CAAC;gCACnF,MAAM;4BACV,OAAO,CAAC,CAAC,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;yBACnD;wBAEQ,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,aAAa,CAAC,MAAM;;;6BAAE,CAAA,CAAC,GAAG,EAAE,CAAA;wBAC7C,qBAAM,GAAG,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,2BAAoB,CAAC,cAAI,EAAE,CAAE,EAAE,CAAC,EAAA;;wBAA5D,SAA4D,CAAC;wBAC7D,qBAAM,oBAAoB,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC,CAAC,EAAE,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,KAAM,EAAE,GAAG,CAAC,EAAA;;wBAAnF,SAAmF,CAAC;;;wBAFrC,EAAE,CAAC,CAAA;;4BAKzC,qBAAM,oBAAoB,CAAC,OAAO,CAAC,GAAG,CAAC,EAAA;;wBAA9C,IAAI,GAAG,SAAuC;wBACpD,sBAAO;gCACH,IAAI,MAAA;gCACJ,QAAQ,EAAE,QAAQ,GAAG,GAAG,GAAG,oBAAoB,CAAC,aAAa;6BAChE,EAAC;;;wBAEF,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,8BAA8B,CAAC,CAAC;wBACtD,MAAM,GAAC,CAAC;;;;aAEf,CAAC,CAAC;QAEH,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IAC3D,CAAC;IAKL,uBAAC;AAAD,CAAC,AA7DD,CAAsC,eAAe,GA6DpD"}

package/lib/extensions/geo-export/glb-exporter.d.ts

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { Style } from '../../mol-gl/renderer';
 import { Box3D } from '../../mol-math/geometry';

package/lib/extensions/geo-export/glb-exporter.js

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { __awaiter, __extends, __generator, __spreadArray } from "tslib";
 import { asciiWrite } from '../../mol-io/common/ascii';
@@ -21,6 +22,11 @@ var UNSIGNED_INT = 5125;
 var FLOAT = 5126;
 var ARRAY_BUFFER = 34962;
 var ELEMENT_ARRAY_BUFFER = 34963;
+var GLTF_MAGIC_BYTE = 0x46546C67;
+var JSON_CHUNK_TYPE = 0x4E4F534A;
+var BIN_CHUNK_TYPE = 0x004E4942;
+var JSON_PAD_CHAR = 0x20;
+var BIN_PAD_CHAR = 0x00;
 var GlbExporter = /** @class */ (function (_super) {
     __extends(GlbExporter, _super);
     function GlbExporter(style, boundingBox) {
@@ -110,20 +116,14 @@ var GlbExporter = /** @class */ (function (_super) {
             indexAccessorIndex: isGeoTexture ? undefined : this.addBuffer(indexBuffer, UNSIGNED_INT, 'SCALAR', drawCount, ELEMENT_ARRAY_BUFFER)
         };
     };
-    GlbExporter.prototype.addColorBuffer = function (values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors) {
-        var groupCount = values.uGroupCount.ref.value;
+    GlbExporter.prototype.addColorBuffer = function (geoData, interpolatedColors, interpolatedOverpaint, interpolatedTransparency) {
+        var values = geoData.values, vertexCount = geoData.vertexCount;
         var uAlpha = values.uAlpha.ref.value;
-        var dTransparency = values.dTransparency.ref.value;
-        var tTransparency = values.tTransparency.ref.value;
         var colorArray = new Uint8Array(vertexCount * 4);
         for (var i = 0; i < vertexCount; ++i) {
-            var color = GlbExporter.getColor(values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors, i);
-            var alpha = uAlpha;
-            if (dTransparency) {
-                var group = isGeoTexture ? GlbExporter.getGroup(groups, i) : groups[i];
-                var transparency = tTransparency.array[instanceIndex * groupCount + group] / 255;
-                alpha *= 1 - transparency;
-            }
+            var color = GlbExporter.getColor(i, geoData, interpolatedColors, interpolatedOverpaint);
+            var transparency = GlbExporter.getTransparency(i, geoData, interpolatedTransparency);
+            var alpha = uAlpha * (1 - transparency);
             color = Color.sRGBToLinear(color);
             Color.toArray(color, colorArray, i * 4);
             colorArray[i * 4 + 3] = Math.round(alpha * 255);
@@ -136,19 +136,29 @@ var GlbExporter = /** @class */ (function (_super) {
     };
     GlbExporter.prototype.addMeshWithColors = function (input) {
         return __awaiter(this, void 0, void 0, function () {
-            var mesh, values, isGeoTexture, webgl, ctx, t, colorType, dTransparency, aTransform, instanceCount, interpolatedColors, stride, sameGeometryBuffers, sameColorBuffer, vertexAccessorIndex, normalAccessorIndex, indexAccessorIndex, colorAccessorIndex, meshIndex, instanceIndex, _a, vertices, normals, indices, groups, vertexCount, drawCount, accessorIndices, node;
+            var mesh, values, isGeoTexture, webgl, ctx, t, colorType, overpaintType, transparencyType, dTransparency, aTransform, instanceCount, interpolatedColors, stride, interpolatedOverpaint, stride, interpolatedTransparency, stride, sameGeometryBuffers, sameColorBuffer, vertexAccessorIndex, normalAccessorIndex, indexAccessorIndex, colorAccessorIndex, meshIndex, instanceIndex, _a, vertices, normals, indices, groups, vertexCount, drawCount, accessorIndices, node;
             return __generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         mesh = input.mesh, values = input.values, isGeoTexture = input.isGeoTexture, webgl = input.webgl, ctx = input.ctx;
                         t = Mat4();
                         colorType = values.dColorType.ref.value;
+                        overpaintType = values.dOverpaintType.ref.value;
+                        transparencyType = values.dTransparencyType.ref.value;
                         dTransparency = values.dTransparency.ref.value;
                         aTransform = values.aTransform.ref.value;
                         instanceCount = values.uInstanceCount.ref.value;
                         if (colorType === 'volume' || colorType === 'volumeInstance') {
                             stride = isGeoTexture ? 4 : 3;
-                            interpolatedColors = GlbExporter.getInterpolatedColors(mesh.vertices, mesh.vertexCount, values, stride, colorType, webgl);
+                            interpolatedColors = GlbExporter.getInterpolatedColors(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: colorType });
+                        }
+                        if (overpaintType === 'volumeInstance') {
+                            stride = isGeoTexture ? 4 : 3;
+                            interpolatedOverpaint = GlbExporter.getInterpolatedOverpaint(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: overpaintType });
+                        }
+                        if (transparencyType === 'volumeInstance') {
+                            stride = isGeoTexture ? 4 : 3;
+                            interpolatedTransparency = GlbExporter.getInterpolatedTransparency(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: transparencyType });
                         }
                         sameGeometryBuffers = mesh !== undefined;
                         sameColorBuffer = sameGeometryBuffers && colorType !== 'instance' && !colorType.endsWith('Instance') && !dTransparency;
@@ -177,7 +187,7 @@ var GlbExporter = /** @class */ (function (_super) {
                             }
                             // create a color buffer if needed
                             if (instanceIndex === 0 || !sameColorBuffer) {
-                                colorAccessorIndex = this.addColorBuffer(values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors);
+                                colorAccessorIndex = this.addColorBuffer({ values: values, groups: groups, vertexCount: vertexCount, instanceIndex: instanceIndex, isGeoTexture: isGeoTexture }, interpolatedColors, interpolatedOverpaint, interpolatedTransparency);
                             }
                             // glTF mesh
                             meshIndex = this.meshes.length;
@@ -218,7 +228,7 @@ var GlbExporter = /** @class */ (function (_super) {
                 gltf = {
                     asset: {
                         version: '2.0',
-                        generator: "Mol* " + PLUGIN_VERSION
+                        generator: "Mol* ".concat(PLUGIN_VERSION)
                     },
                     scenes: [{
                             nodes: fillSerial(new Array(this.nodes.length))
@@ -259,12 +269,12 @@ var GlbExporter = /** @class */ (function (_super) {
                 jsonString = JSON.stringify(gltf);
                 jsonBuffer = new Uint8Array(jsonString.length);
                 asciiWrite(jsonBuffer, jsonString);
-                _a = createChunk(0x4E4F534A, [jsonBuffer.buffer], jsonBuffer.length, 0x20), jsonChunk = _a[0], jsonChunkLength = _a[1];
-                _b = createChunk(0x004E4942, this.binaryBuffer, binaryBufferLength, 0x00), binaryChunk = _b[0], binaryChunkLength = _b[1];
+                _a = createChunk(JSON_CHUNK_TYPE, [jsonBuffer.buffer], jsonBuffer.length, JSON_PAD_CHAR), jsonChunk = _a[0], jsonChunkLength = _a[1];
+                _b = createChunk(BIN_CHUNK_TYPE, this.binaryBuffer, binaryBufferLength, BIN_PAD_CHAR), binaryChunk = _b[0], binaryChunkLength = _b[1];
                 glbBufferLength = 12 + jsonChunkLength + binaryChunkLength;
                 header = new ArrayBuffer(12);
                 headerDataView = new DataView(header);
-                headerDataView.setUint32(0, 0x46546C67, true); // magic number "glTF"
+                headerDataView.setUint32(0, GLTF_MAGIC_BYTE, true); // magic number "glTF"
                 headerDataView.setUint32(4, 2, true); // version
                 headerDataView.setUint32(8, glbBufferLength, true); // length
                 glbBuffer = __spreadArray(__spreadArray([header], jsonChunk, true), binaryChunk, true);

package/lib/extensions/geo-export/glb-exporter.js.map

@@ -1 +1 @@
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