@nfdi4plants/arctrl 3.1.1 → 3.2.0

package/dist/ts/ts/Core/Table/CompositeHeader.d.ts

@@ -1,8 +1,9 @@
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { int32 } from '@fable-org/fable-library-js/Int32.js';
-import { Union } from '@fable-org/fable-library-js/Types.js';
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
+import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
+import { Union } from '@fable-org/fable-library-ts/Types.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { OntologyAnnotation } from '../OntologyAnnotation.ts';
 export type IOType_$union = IOType<0> | IOType<1> | IOType<2> | IOType<3> | IOType<4>;
 export type IOType_$cases = {
     0: ["Source", []];
@@ -11,23 +12,49 @@ export type IOType_$cases = {
     3: ["Material", []];
     4: ["FreeText", [string]];
 };
-export declare function IOType_Source(): IOType<0>;
-export declare function IOType_Sample(): IOType<1>;
-export declare function IOType_Data(): IOType<2>;
-export declare function IOType_Material(): IOType<3>;
+export declare function IOType_Source(): any;
+export declare function IOType_Sample(): any;
+export declare function IOType_Data(): any;
+export declare function IOType_Material(): any;
 export declare function IOType_FreeText(Item: string): IOType<4>;
 export declare class IOType<Tag extends keyof IOType_$cases> extends Union<Tag, IOType_$cases[Tag][0]> {
+    constructor(tag: Tag, fields: IOType_$cases[Tag][1]);
     readonly tag: Tag;
     readonly fields: IOType_$cases[Tag][1];
-    constructor(tag: Tag, fields: IOType_$cases[Tag][1]);
     cases(): string[];
-    static get All(): IOType_$union[];
-    static get Cases(): [int32, string][];
+    static readonly Source: any;
+    static readonly Sample: any;
+    static readonly Data: any;
+    static readonly Material: any;
+    /**
+     * This member is used to iterate over all existing `IOType`s (excluding FreeText case).
+     */
+    static get All(): MutableArray<IOType_$union>;
+    static get Cases(): MutableArray<[int32, string]>;
     get asInput(): string;
     get asOutput(): string;
+    /**
+     * Given two IOTypes, tries to return the one with a higher specificity. If both are equally specific, fail.
+     *
+     * E.g. RawDataFile is more specific than Source, but less specific than DerivedDataFile.
+     *
+     * E.g. Sample is equally specific to RawDataFile.
+     */
     Merge(other: IOType_$union): IOType_$union;
     toString(): string;
+    /**
+     * Used to match only(!) IOType string to IOType (without Input/Output). This matching is case sensitive.
+     *
+     * Exmp. 1: "Source" --> Source
+     *
+     * Exmp. 2: "Raw Data File" | "RawDataFile" -> RawDataFile
+     */
     static ofString(str: string): IOType_$union;
+    /**
+     * Used to match Input/Output annotation table header to IOType
+     *
+     * Exmp. 1: "Input [Source]" --> Some Source
+     */
     static tryOfHeaderString(str: string): Option<IOType_$union>;
     static source(): IOType_$union;
     static sample(): IOType_$union;
@@ -58,34 +85,96 @@ export declare function CompositeHeader_Component(Item: OntologyAnnotation): Com
 export declare function CompositeHeader_Characteristic(Item: OntologyAnnotation): CompositeHeader<1>;
 export declare function CompositeHeader_Factor(Item: OntologyAnnotation): CompositeHeader<2>;
 export declare function CompositeHeader_Parameter(Item: OntologyAnnotation): CompositeHeader<3>;
-export declare function CompositeHeader_ProtocolType(): CompositeHeader<4>;
-export declare function CompositeHeader_ProtocolDescription(): CompositeHeader<5>;
-export declare function CompositeHeader_ProtocolUri(): CompositeHeader<6>;
-export declare function CompositeHeader_ProtocolVersion(): CompositeHeader<7>;
-export declare function CompositeHeader_ProtocolREF(): CompositeHeader<8>;
-export declare function CompositeHeader_Performer(): CompositeHeader<9>;
-export declare function CompositeHeader_Date(): CompositeHeader<10>;
+export declare function CompositeHeader_ProtocolType(): any;
+export declare function CompositeHeader_ProtocolDescription(): any;
+export declare function CompositeHeader_ProtocolUri(): any;
+export declare function CompositeHeader_ProtocolVersion(): any;
+export declare function CompositeHeader_ProtocolREF(): any;
+export declare function CompositeHeader_Performer(): any;
+export declare function CompositeHeader_Date$(): any;
 export declare function CompositeHeader_Input(Item: IOType_$union): CompositeHeader<11>;
 export declare function CompositeHeader_Output(Item: IOType_$union): CompositeHeader<12>;
 export declare function CompositeHeader_FreeText(Item: string): CompositeHeader<13>;
-export declare function CompositeHeader_Comment(Item: string): CompositeHeader<14>;
+export declare function CompositeHeader_Comment$(Item: string): CompositeHeader<14>;
+/**
+ * Model of the different types of Building Blocks in an ARC Annotation Table.
+ */
 export declare class CompositeHeader<Tag extends keyof CompositeHeader_$cases> extends Union<Tag, CompositeHeader_$cases[Tag][0]> {
+    constructor(tag: Tag, fields: CompositeHeader_$cases[Tag][1]);
     readonly tag: Tag;
     readonly fields: CompositeHeader_$cases[Tag][1];
-    constructor(tag: Tag, fields: CompositeHeader_$cases[Tag][1]);
     cases(): string[];
-    static get Cases(): [int32, string][];
+    static readonly ProtocolType: any;
+    static readonly ProtocolDescription: any;
+    static readonly ProtocolUri: any;
+    static readonly ProtocolVersion: any;
+    static readonly ProtocolREF: any;
+    static readonly Performer: any;
+    static readonly Date$: any;
+    static get Cases(): MutableArray<[int32, string]>;
+    /**
+     * This function is used to programmatically create `CompositeHeaders` in JavaScript. Returns integer code representative of input type.
+     *
+     * 0: Expects no input
+     *
+     * 1: Expects OntologyAnnotation as input
+     *
+     * 2: Expects IOType as input
+     *
+     * 3: Expects string as input
+     */
     static jsGetColumnMetaType(inp: int32): int32;
     toString(): string;
+    /**
+     * If the column is a term column, returns the term as `OntologyAnnotation`. Otherwise returns an `OntologyAnnotation` with only the name.
+     */
     ToTerm(): OntologyAnnotation;
+    /**
+     * Tries to create a `CompositeHeader` from a given string.
+     */
     static OfHeaderString(str: string): CompositeHeader_$union;
+    /**
+     * Returns true if column is deprecated
+     */
     get IsDeprecated(): boolean;
+    /**
+     * Is true if this Building Block type is a CvParamColumn.
+     *
+     * The name "CvParamColumn" refers to all columns with the syntax "Parameter/Factor/etc [TERM-NAME]".
+     *
+     * Does return false for featured columns such as Protocol Type.
+     */
     get IsCvParamColumn(): boolean;
+    /**
+     * Is true if this Building Block type is a TermColumn.
+     *
+     * The name "TermColumn" refers to all columns with the syntax "Parameter/Factor/etc [TERM-NAME]" and featured columns
+     * such as Protocol Type as these are also represented as a triplet of MainColumn-TSR-TAN.
+     */
     get IsTermColumn(): boolean;
     get IsDataColumn(): boolean;
+    /**
+     * Is true if the Building Block type is a FeaturedColumn.
+     *
+     * A FeaturedColumn can be abstracted by Parameter/Factor/Characteristic and describes one common usecase of either.
+     * Such a block will contain TSR and TAN and can be used for directed Term search.
+     */
     get IsFeaturedColumn(): boolean;
+    /**
+     * This function gets the associated term accession for featured columns.
+     *
+     * It contains the hardcoded term accessions.
+     */
     get GetFeaturedColumnAccession(): string;
+    /**
+     * This function gets the associated term accession for term columns.
+     */
     get GetColumnAccessionShort(): string;
+    /**
+     * Is true if the Building Block type is parsed to a single column.
+     *
+     * This can be any input, output column, as well as for example: `ProtocolREF` and `Performer` with FreeText body cells.
+     */
     get IsSingleColumn(): boolean;
     get IsIOType(): boolean;
     get isInput(): boolean;
@@ -109,6 +198,11 @@ export declare class CompositeHeader<Tag extends keyof CompositeHeader_$cases> e
     TryIOType(): Option<IOType_$union>;
     get IsUnique(): boolean;
     Copy(): CompositeHeader_$union;
+    /**
+     * Returns the term of the column if it is a term column. Otherwise returns None.
+     *
+     * Term columns are Parameter, Factor, Characteristic and Component.
+     */
     TryGetTerm(): Option<OntologyAnnotation>;
     static component(oa: OntologyAnnotation): CompositeHeader_$union;
     static characteristic(oa: OntologyAnnotation): CompositeHeader_$union;

package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map

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