@nfdi4plants/arctrl 3.1.1 → 3.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ts/index.d.ts +3 -0
- package/dist/ts/index.d.ts.map +1 -1
- package/dist/ts/index.js +3 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Array.js +1296 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Async.js +174 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/AsyncBuilder.js +190 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/BigInt.js +479 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Boolean.js +23 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Char.js +172 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Choice.js +187 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/CollectionUtil.js +148 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Date.js +843 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/DateOffset.js +247 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Decimal.js +279 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Double.js +53 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/FSharp.Collections.js +48 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/FSharp.Core.js +148 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Global.js +31 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Guid.js +140 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Int32.js +165 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/List.js +1282 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Long.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Map.js +1298 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/MapUtil.js +126 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/MutableMap.js +323 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/MutableSet.js +225 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Native.js +14 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Numeric.js +63 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Option.js +81 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Random.js +174 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Range.js +47 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Reflection.js +471 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/RegExp.js +137 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Result.js +169 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Seq.js +1398 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Seq2.js +110 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Set.js +1670 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/String.js +660 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/System.Collections.Generic.js +328 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/System.Text.js +201 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/System.js +292 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/TimeSpan.js +170 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Types.js +199 -0
- package/dist/ts/node_modules/@fable-org/{fable-library-js → fable-library-ts}/Unicode.13.0.0.js +0 -2
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Uri.js +154 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/Util.js +747 -0
- package/dist/ts/node_modules/@fable-org/fable-library-ts/lib/big.js +1052 -0
- package/dist/ts/ts/ARC.d.ts +122 -62
- package/dist/ts/ts/ARC.d.ts.map +1 -1
- package/dist/ts/ts/ARC.js +142 -86
- package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts +32 -0
- package/dist/ts/ts/CWL/CWLKnownFieldNames.d.ts.map +1 -0
- package/dist/ts/ts/CWL/CWLKnownFieldNames.js +95 -0
- package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts +12 -12
- package/dist/ts/ts/CWL/CWLProcessingUnit.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLProcessingUnit.js +7 -7
- package/dist/ts/ts/CWL/CWLTypes.d.ts +62 -19
- package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
- package/dist/ts/ts/CWL/CWLTypes.js +241 -60
- package/dist/ts/ts/CWL/Decode.d.ts +24 -25
- package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Decode.js +454 -314
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +4 -4
- package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -1
- package/dist/ts/ts/CWL/DynamicObjHelpers.js +10 -10
- package/dist/ts/ts/CWL/Encode.d.ts +26 -17
- package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Encode.js +451 -411
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +31 -7
- package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ExpressionToolDescription.js +29 -8
- package/dist/ts/ts/CWL/HashHelpers.d.ts +4 -3
- package/dist/ts/ts/CWL/HashHelpers.d.ts.map +1 -1
- package/dist/ts/ts/CWL/HashHelpers.js +9 -9
- package/dist/ts/ts/CWL/Inputs.d.ts +8 -8
- package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Inputs.js +9 -13
- package/dist/ts/ts/CWL/OperationDescription.d.ts +7 -7
- package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/OperationDescription.js +5 -8
- package/dist/ts/ts/CWL/Outputs.d.ts +10 -10
- package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Outputs.js +36 -17
- package/dist/ts/ts/CWL/ParameterReference.d.ts +13 -10
- package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ParameterReference.js +29 -21
- package/dist/ts/ts/CWL/ParameterValue.d.ts +57 -0
- package/dist/ts/ts/CWL/ParameterValue.d.ts.map +1 -0
- package/dist/ts/ts/CWL/ParameterValue.js +321 -0
- package/dist/ts/ts/CWL/Requirements.d.ts +51 -23
- package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
- package/dist/ts/ts/CWL/Requirements.js +89 -81
- package/dist/ts/ts/CWL/ToolDescription.d.ts +33 -9
- package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/ToolDescription.js +29 -8
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts +29 -8
- package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowDescription.js +26 -8
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts +45 -21
- package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
- package/dist/ts/ts/CWL/WorkflowSteps.js +70 -34
- package/dist/ts/ts/CWLRunResolver.d.ts +11 -11
- package/dist/ts/ts/CWLRunResolver.d.ts.map +1 -1
- package/dist/ts/ts/CWLRunResolver.js +16 -16
- package/dist/ts/ts/Contract/ARC.d.ts +2 -2
- package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ARC.js +1 -1
- package/dist/ts/ts/Contract/ArcAssay.d.ts +7 -6
- package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcAssay.js +15 -10
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts +5 -4
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcInvestigation.js +12 -7
- package/dist/ts/ts/Contract/ArcRun.d.ts +11 -10
- package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcRun.js +24 -21
- package/dist/ts/ts/Contract/ArcStudy.d.ts +8 -7
- package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcStudy.js +15 -10
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts +9 -8
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ArcWorkflow.js +20 -16
- package/dist/ts/ts/Contract/Contract.d.ts +38 -8
- package/dist/ts/ts/Contract/Contract.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Contract.js +46 -7
- package/dist/ts/ts/Contract/Datamap.d.ts +5 -4
- package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Datamap.js +45 -32
- package/dist/ts/ts/Contract/Git.d.ts +6 -5
- package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Git.js +4 -4
- package/dist/ts/ts/Contract/License.d.ts +4 -3
- package/dist/ts/ts/Contract/License.d.ts.map +1 -1
- package/dist/ts/ts/Contract/License.js +5 -5
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts +5 -4
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ValidationPackagesConfig.js +6 -7
- package/dist/ts/ts/ContractIO/ContractIO.d.ts +5 -4
- package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/ContractIO.js +45 -43
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +13 -12
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -1
- package/dist/ts/ts/ContractIO/FileSystemHelper.js +6 -6
- package/dist/ts/ts/Conversion/Assay.d.ts +5 -5
- package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Assay.js +35 -16
- package/dist/ts/ts/Conversion/Basic.d.ts +16 -13
- package/dist/ts/ts/Conversion/Basic.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Basic.js +69 -38
- package/dist/ts/ts/Conversion/ColumnIndex.d.ts +3 -3
- package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/ColumnIndex.js +8 -8
- package/dist/ts/ts/Conversion/Datamap.d.ts +4 -4
- package/dist/ts/ts/Conversion/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Datamap.js +2 -2
- package/dist/ts/ts/Conversion/DateTime.d.ts +1 -1
- package/dist/ts/ts/Conversion/DateTime.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/DateTime.js +7 -6
- package/dist/ts/ts/Conversion/Investigation.d.ts +5 -5
- package/dist/ts/ts/Conversion/Investigation.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Investigation.js +17 -10
- package/dist/ts/ts/Conversion/Person.d.ts +4 -4
- package/dist/ts/ts/Conversion/Person.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Person.js +39 -23
- package/dist/ts/ts/Conversion/Process.d.ts +14 -11
- package/dist/ts/ts/Conversion/Process.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Process.js +57 -46
- package/dist/ts/ts/Conversion/Run.d.ts +12 -17
- package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Run.js +450 -68
- package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts +4 -4
- package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/ScholarlyArticle.js +25 -17
- package/dist/ts/ts/Conversion/Study.d.ts +5 -5
- package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Study.js +27 -13
- package/dist/ts/ts/Conversion/Table.d.ts +10 -11
- package/dist/ts/ts/Conversion/Table.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Table.js +17 -24
- package/dist/ts/ts/Conversion/Workflow.d.ts +17 -17
- package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
- package/dist/ts/ts/Conversion/Workflow.js +78 -40
- package/dist/ts/ts/Conversion.d.ts +10 -11
- package/dist/ts/ts/Conversion.d.ts.map +1 -1
- package/dist/ts/ts/Conversion.js +2 -2
- package/dist/ts/ts/Core/ArcTypes.d.ts +331 -76
- package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
- package/dist/ts/ts/Core/ArcTypes.js +567 -299
- package/dist/ts/ts/Core/Comment.d.ts +5 -5
- package/dist/ts/ts/Core/Comment.d.ts.map +1 -1
- package/dist/ts/ts/Core/Comment.js +17 -10
- package/dist/ts/ts/Core/CommentList.d.ts +3 -3
- package/dist/ts/ts/Core/CommentList.d.ts.map +1 -1
- package/dist/ts/ts/Core/CommentList.js +8 -8
- package/dist/ts/ts/Core/Conversion.d.ts +25 -25
- package/dist/ts/ts/Core/Conversion.d.ts.map +1 -1
- package/dist/ts/ts/Core/Conversion.js +102 -102
- package/dist/ts/ts/Core/Data.d.ts +6 -6
- package/dist/ts/ts/Core/Data.d.ts.map +1 -1
- package/dist/ts/ts/Core/Data.js +11 -10
- package/dist/ts/ts/Core/DataContext.d.ts +10 -10
- package/dist/ts/ts/Core/DataContext.d.ts.map +1 -1
- package/dist/ts/ts/Core/DataContext.js +3 -3
- package/dist/ts/ts/Core/DataFile.d.ts +9 -6
- package/dist/ts/ts/Core/DataFile.d.ts.map +1 -1
- package/dist/ts/ts/Core/DataFile.js +20 -9
- package/dist/ts/ts/Core/Datamap.d.ts +17 -16
- package/dist/ts/ts/Core/Datamap.d.ts.map +1 -1
- package/dist/ts/ts/Core/Datamap.js +16 -14
- package/dist/ts/ts/Core/Helper/Collections.d.ts +4 -4
- package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Collections.js +30 -37
- package/dist/ts/ts/Core/Helper/HashCodes.d.ts +15 -4
- package/dist/ts/ts/Core/Helper/HashCodes.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/HashCodes.js +33 -14
- package/dist/ts/ts/Core/Helper/Identifier.d.ts +1 -1
- package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Identifier.js +10 -8
- package/dist/ts/ts/Core/Helper/ORCID.d.ts +1 -1
- package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/ORCID.js +4 -3
- package/dist/ts/ts/Core/Helper/Regex.d.ts +7 -7
- package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Regex.js +20 -12
- package/dist/ts/ts/Core/Helper/SemVer.d.ts +5 -5
- package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/SemVer.js +7 -7
- package/dist/ts/ts/Core/Helper/Url.d.ts +1 -1
- package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -1
- package/dist/ts/ts/Core/Helper/Url.js +8 -7
- package/dist/ts/ts/Core/IdentifierSetters.d.ts +2 -2
- package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -1
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts +23 -5
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -1
- package/dist/ts/ts/Core/OntologyAnnotation.js +116 -45
- package/dist/ts/ts/Core/OntologySourceReference.d.ts +4 -4
- package/dist/ts/ts/Core/OntologySourceReference.d.ts.map +1 -1
- package/dist/ts/ts/Core/OntologySourceReference.js +4 -4
- package/dist/ts/ts/Core/Person.d.ts +19 -9
- package/dist/ts/ts/Core/Person.d.ts.map +1 -1
- package/dist/ts/ts/Core/Person.js +27 -11
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts +11 -11
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ColumnIndex.js +68 -29
- package/dist/ts/ts/Core/Process/Component.d.ts +16 -16
- package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Component.js +38 -25
- package/dist/ts/ts/Core/Process/Factor.d.ts +53 -8
- package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Factor.js +62 -11
- package/dist/ts/ts/Core/Process/FactorValue.d.ts +15 -15
- package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/FactorValue.js +39 -47
- package/dist/ts/ts/Core/Process/Material.d.ts +9 -9
- package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Material.js +5 -5
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts +7 -7
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/MaterialAttribute.js +17 -8
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts +15 -15
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +45 -48
- package/dist/ts/ts/Core/Process/MaterialType.d.ts +7 -5
- package/dist/ts/ts/Core/Process/MaterialType.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/MaterialType.js +14 -7
- package/dist/ts/ts/Core/Process/Process.d.ts +22 -22
- package/dist/ts/ts/Core/Process/Process.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Process.js +42 -26
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts +14 -14
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessInput.js +15 -10
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts +14 -14
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessOutput.js +15 -10
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts +30 -15
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessParameterValue.js +56 -46
- package/dist/ts/ts/Core/Process/ProcessSequence.d.ts +16 -16
- package/dist/ts/ts/Core/Process/ProcessSequence.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProcessSequence.js +33 -26
- package/dist/ts/ts/Core/Process/Protocol.d.ts +9 -9
- package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Protocol.js +21 -13
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts +28 -7
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/ProtocolParameter.js +33 -8
- package/dist/ts/ts/Core/Process/Sample.d.ts +10 -10
- package/dist/ts/ts/Core/Process/Sample.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Sample.js +5 -5
- package/dist/ts/ts/Core/Process/Source.d.ts +8 -8
- package/dist/ts/ts/Core/Process/Source.d.ts.map +1 -1
- package/dist/ts/ts/Core/Process/Source.js +5 -5
- package/dist/ts/ts/Core/Publication.d.ts +5 -5
- package/dist/ts/ts/Core/Publication.d.ts.map +1 -1
- package/dist/ts/ts/Core/Publication.js +18 -11
- package/dist/ts/ts/Core/ScalarValue.d.ts +41 -0
- package/dist/ts/ts/Core/ScalarValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/{Value.js → ScalarValue.js} +56 -29
- package/dist/ts/ts/Core/Table/ArcTable.d.ts +134 -15
- package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTable.js +204 -68
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +15 -10
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTableAux.js +75 -71
- package/dist/ts/ts/Core/Table/ArcTables.d.ts +12 -9
- package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/ArcTables.js +42 -38
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts +46 -7
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/CompositeCell.js +52 -12
- package/dist/ts/ts/Core/Table/CompositeColumn.d.ts +20 -7
- package/dist/ts/ts/Core/Table/CompositeColumn.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/CompositeColumn.js +17 -4
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts +116 -22
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -1
- package/dist/ts/ts/Core/Table/CompositeHeader.js +219 -65
- package/dist/ts/ts/Core/Template.d.ts +15 -9
- package/dist/ts/ts/Core/Template.d.ts.map +1 -1
- package/dist/ts/ts/Core/Template.js +19 -11
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- package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +0 -557
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Collections.Generic.js +0 -320
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +0 -165
- package/dist/ts/node_modules/@fable-org/fable-library-js/SystemException.js +0 -8
- package/dist/ts/node_modules/@fable-org/fable-library-js/TimeSpan.js +0 -180
- package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +0 -211
- package/dist/ts/node_modules/@fable-org/fable-library-js/Uri.js +0 -160
- package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +0 -771
- package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +0 -825
- package/dist/ts/ts/Core/Value.d.ts +0 -41
- package/dist/ts/ts/Core/Value.d.ts.map +0 -1
- package/dist/ts/ts/fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js +0 -367
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +0 -68
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Regex.fs.js +0 -21
- package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/StringBuffer.fs.js +0 -60
- /package/dist/ts/ts/fable_modules/{Fable.Exceljs.1.6.0 → Fable.Exceljs.2.0.0_565fc3e-alpha.1}/ExcelJs.fs.js +0 -0
- /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.11 → YAMLicious.1.0.0}/Interop/JsInterop.fs.js +0 -0
package/dist/ts/ts/CWL/Decode.js
CHANGED
|
@@ -1,30 +1,34 @@
|
|
|
1
|
-
import { getEnumerator, disposeSafe, defaultOf, comparePrimitives } from '../../node_modules/@fable-org/fable-library-
|
|
2
|
-
import { Record, FSharpRef } from '../../node_modules/@fable-org/fable-library-
|
|
3
|
-
import { value,
|
|
4
|
-
import { record_type, string_type, option_type, array_type } from '../../node_modules/@fable-org/fable-library-
|
|
5
|
-
import { toText, printf, interpolate, substring, replace, trim } from '../../node_modules/@fable-org/fable-library-
|
|
6
|
-
import { YAMLElement_Mapping, YAMLElement_Sequence, YAMLElement_Object
|
|
7
|
-
import { choose, isEmpty, head, tail, empty, map
|
|
8
|
-
import {
|
|
9
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-
import {
|
|
10
|
-
import {
|
|
11
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-
import {
|
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12
|
-
import { tryParse
|
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13
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-
import {
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14
|
-
import {
|
|
15
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-
import {
|
|
16
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-
import {
|
|
17
|
-
import {
|
|
1
|
+
import { getEnumerator, disposeSafe, Exception, defaultOf, comparePrimitives } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
|
|
2
|
+
import { Record, FSharpRef } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
|
|
3
|
+
import { value, unwrap, defaultArg, some } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
|
|
4
|
+
import { record_type, string_type, option_type, array_type } from '../../node_modules/@fable-org/fable-library-ts/Reflection.js';
|
|
5
|
+
import { toText, printf, concat, interpolate, substring, replace, trim } from '../../node_modules/@fable-org/fable-library-ts/String.js';
|
|
6
|
+
import { YAMLElement_Mapping, YAMLElement_Sequence, YAMLElement_Object$, YAMLContent_create_Z1C3A29C9, YAMLElement_Value } from '../fable_modules/YAMLicious.1.0.0/YAMLiciousTypes.fs.js';
|
|
7
|
+
import { choose, isEmpty, head, tail, empty, map, exists, tryPick, mapIndexed, cons, singleton, ofArray, append, filter } from '../../node_modules/@fable-org/fable-library-ts/List.js';
|
|
8
|
+
import { KeyNotFoundException } from '../../node_modules/@fable-org/fable-library-ts/System.Collections.Generic.js';
|
|
9
|
+
import { ArgumentException, FormatException, InvalidOperationException, ArgumentException_$ctor_Z721C83C5, InvalidOperationException_$ctor_Z721C83C5 } from '../../node_modules/@fable-org/fable-library-ts/System.js';
|
|
10
|
+
import { read, object, string, bool, resizearray, int } from '../fable_modules/YAMLicious.1.0.0/Decode.fs.js';
|
|
11
|
+
import { compare } from '../../node_modules/@fable-org/fable-library-ts/BigInt.js';
|
|
12
|
+
import { tryParse } from '../../node_modules/@fable-org/fable-library-ts/Boolean.js';
|
|
13
|
+
import { tryParse as tryParse$1 } from '../../node_modules/@fable-org/fable-library-ts/Long.js';
|
|
14
|
+
import { tryParse as tryParse$2 } from '../../node_modules/@fable-org/fable-library-ts/Double.js';
|
|
15
|
+
import { DynamicObj } from '../fable_modules/DynamicObj.8.0.0/DynamicObj.fs.js';
|
|
16
|
+
import { setProperty } from '../fable_modules/DynamicObj.8.0.0/DynObj.fs.js';
|
|
17
|
+
import { LoadListingEnum_tryParse_Z721C83C5, InitialWorkDirEntry_StringEntry, InitialWorkDirEntry_DirentEntry, InitialWorkDirEntry_DirectoryEntry, InitialWorkDirEntry_FileEntry, DockerRequirement, EnvironmentDef, LoadListingRequirementValue, ResourceRequirementInstance, Requirement_WorkReuseExpressionRequirement, Requirement_WorkReuseRequirement, WorkReuseRequirementValue, Requirement_NetworkAccessExpressionRequirement, Requirement_NetworkAccessRequirement, NetworkAccessRequirementValue, InplaceUpdateRequirementValue, ToolTimeLimitValue_ToolTimeLimitExpression, ToolTimeLimitValue_ToolTimeLimitSeconds, InlineJavascriptRequirementValue, Requirement, Requirement_ToolTimeLimitRequirement, Requirement_InplaceUpdateRequirement, Requirement_ResourceRequirement, Requirement_EnvVarRequirement, Requirement_InitialWorkDirRequirement, Requirement_LoadListingRequirement, Requirement_SoftwareRequirement, Requirement_DockerRequirement, Requirement_SchemaDefRequirement, Requirement_InlineJavascriptRequirement, HintEntry_UnknownHint, HintUnknownValue, HintEntry_KnownHint } from './Requirements.js';
|
|
18
|
+
import { FileInstance, DirectoryInstance, SchemaSaladString_Literal, SchemaSaladString_Import, SchemaSaladString_Include, SchemaSaladStringModule_toDirectiveString, DirentInstance, CWLType_Dirent, CWLType, CWLType_Directory, CWLType_File, CWLType_Array$, InputArraySchema, InputRecordField, InputRecordSchema, InputEnumSchema, CWLType_Union, CWLType_Enum, CWLType_Record, SoftwarePackage, SchemaDefRequirementType } from './CWLTypes.js';
|
|
19
|
+
import { toList, toArray, delay, map as map$1, head as head$1, length } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
|
|
18
20
|
import { OutputBinding, CWLOutput, OutputSource_Single, OutputSource_Multiple } from './Outputs.js';
|
|
19
|
-
import {
|
|
20
|
-
import {
|
|
21
|
+
import { item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
|
|
22
|
+
import { getItemFromDict } from '../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
|
|
23
|
+
import { unionMany } from '../../node_modules/@fable-org/fable-library-ts/Set.js';
|
|
21
24
|
import { InputBinding, CWLInput } from './Inputs.js';
|
|
22
25
|
import { LinkMergeMethod, PickValueMethod, ScatterMethod, StepInput, StepOutputParameter, StepOutput_StepOutputRecord, StepOutput_StepOutputString, WorkflowStepRun_RunString, WorkflowStep } from './WorkflowSteps.js';
|
|
23
26
|
import { WorkflowStepRunOps_fromTool, WorkflowStepRunOps_fromOperation, WorkflowStepRunOps_fromExpressionTool, WorkflowStepRunOps_fromWorkflow, CWLProcessingUnit_Operation, CWLProcessingUnit_ExpressionTool, CWLProcessingUnit_Workflow, CWLProcessingUnit_CommandLineTool } from './CWLProcessingUnit.js';
|
|
24
|
-
import {
|
|
27
|
+
import { CWLWorkflowDescription } from './WorkflowDescription.js';
|
|
25
28
|
import { CWLExpressionToolDescription } from './ExpressionToolDescription.js';
|
|
26
29
|
import { CWLOperationDescription } from './OperationDescription.js';
|
|
27
|
-
import {
|
|
30
|
+
import { CWLToolDescription } from './ToolDescription.js';
|
|
31
|
+
import { CWLParameterValue_String$, CWLParameterValue_Record, CWLParameterRecordField, CWLParameterValue_Directory, CWLParameterValue_File, CWLParameterValue_Array$, CWLParameterValue_Int, CWLParameterValue_Float, CWLParameterValue_Boolean$, CWLParameterValue, CWLParameterValueModule_tryInferType } from './ParameterValue.js';
|
|
28
32
|
import { CWLParameterReference } from './ParameterReference.js';
|
|
29
33
|
|
|
30
34
|
function ResizeArray_map(f, a) {
|
|
@@ -62,18 +66,18 @@ function Decode_DecodeResult$1_$reflection(gen0) {
|
|
|
62
66
|
return record_type("ARCtrl.CWL.Decode.DecodeResult`1", [gen0], Decode_DecodeResult$1, () => [["Value", gen0], ["Warnings", array_type(Decode_DecodeWarning_$reflection())]]);
|
|
63
67
|
}
|
|
64
68
|
function Decode_addWarning(warnings, path, message, raw) {
|
|
65
|
-
let clo;
|
|
69
|
+
let mapping = void 0, clo = void 0, option_1 = void 0;
|
|
66
70
|
if (warnings == null) {
|
|
67
71
|
} else {
|
|
68
72
|
const warningList = value(warnings);
|
|
69
|
-
void warningList.push(new Decode_DecodeWarning(path, message,
|
|
73
|
+
void warningList.push(new Decode_DecodeWarning(path, message, (mapping = (clo = toText(printf("%A")), clo), option_1 = raw, option_1 != null ? mapping(value(option_1)) : void 0)));
|
|
70
74
|
}
|
|
71
75
|
}
|
|
72
76
|
function Decode_removeYamlComments(yamlElement) {
|
|
73
77
|
switch (yamlElement.tag) {
|
|
74
78
|
case /* Object */
|
|
75
79
|
3:
|
|
76
|
-
return YAMLElement_Object(choose((element) => {
|
|
80
|
+
return YAMLElement_Object$(choose((element) => {
|
|
77
81
|
if (element.tag === /* Comment */
|
|
78
82
|
4) {
|
|
79
83
|
return void 0;
|
|
@@ -85,7 +89,7 @@ function Decode_removeYamlComments(yamlElement) {
|
|
|
85
89
|
2:
|
|
86
90
|
return YAMLElement_Sequence(choose((element_1) => {
|
|
87
91
|
const matchValue = Decode_removeYamlComments(element_1);
|
|
88
|
-
let matchResult, other_1;
|
|
92
|
+
let matchResult = void 0, other_1 = void 0;
|
|
89
93
|
switch (matchValue.tag) {
|
|
90
94
|
case /* Comment */
|
|
91
95
|
4: {
|
|
@@ -124,8 +128,24 @@ function Decode_removeYamlComments(yamlElement) {
|
|
|
124
128
|
}
|
|
125
129
|
}
|
|
126
130
|
function Decode_isRecoverableDecodingError(ex) {
|
|
127
|
-
let matchResult;
|
|
128
|
-
if (ex
|
|
131
|
+
let matchResult = void 0;
|
|
132
|
+
if (ex instanceof KeyNotFoundException) {
|
|
133
|
+
matchResult = 0;
|
|
134
|
+
} else if (ex instanceof ArgumentException) {
|
|
135
|
+
matchResult = 1;
|
|
136
|
+
} else if (ex instanceof FormatException) {
|
|
137
|
+
matchResult = 2;
|
|
138
|
+
} else if (ex instanceof InvalidOperationException) {
|
|
139
|
+
if (ex.message.indexOf("decode") >= 0) {
|
|
140
|
+
matchResult = 3;
|
|
141
|
+
} else if (ex.message.indexOf("Expected") >= 0) {
|
|
142
|
+
matchResult = 4;
|
|
143
|
+
} else if (ex.message.indexOf("Required") >= 0) {
|
|
144
|
+
matchResult = 5;
|
|
145
|
+
} else {
|
|
146
|
+
matchResult = 6;
|
|
147
|
+
}
|
|
148
|
+
} else if (ex.message.indexOf("Expected") >= 0) {
|
|
129
149
|
matchResult = 4;
|
|
130
150
|
} else if (ex.message.indexOf("Required") >= 0) {
|
|
131
151
|
matchResult = 5;
|
|
@@ -157,8 +177,8 @@ function Decode_boxOverflowInt64(value) {
|
|
|
157
177
|
}
|
|
158
178
|
function Decode_overflowDecoder(dynObj, dict) {
|
|
159
179
|
const decodeOverflowValue = (value_1) => {
|
|
160
|
-
let collection;
|
|
161
|
-
let matchResult, v_3, items, other;
|
|
180
|
+
let collection = void 0;
|
|
181
|
+
let matchResult = void 0, v_3 = void 0, items = void 0, other = void 0;
|
|
162
182
|
switch (value_1.tag) {
|
|
163
183
|
case /* Value */
|
|
164
184
|
1: {
|
|
@@ -213,7 +233,7 @@ function Decode_overflowDecoder(dynObj, dict) {
|
|
|
213
233
|
case 0: {
|
|
214
234
|
const value$1 = v_3;
|
|
215
235
|
const matchValue = value$1.Style;
|
|
216
|
-
let matchResult_1;
|
|
236
|
+
let matchResult_1 = void 0;
|
|
217
237
|
if (matchValue != null) {
|
|
218
238
|
switch (value(matchValue).tag) {
|
|
219
239
|
case /* SingleQuoted */
|
|
@@ -267,7 +287,7 @@ function Decode_overflowDecoder(dynObj, dict) {
|
|
|
267
287
|
}
|
|
268
288
|
}
|
|
269
289
|
case 1:
|
|
270
|
-
return collection = map
|
|
290
|
+
return collection = map(decodeOverflowValue, items), Array.from(collection);
|
|
271
291
|
case 2:
|
|
272
292
|
return Decode_overflowDecoder(new DynamicObj(), object((get$) => get$.Overflow.FieldList(empty()), value_1));
|
|
273
293
|
default:
|
|
@@ -286,7 +306,7 @@ function Decode_overflowDecoder(dynObj, dict) {
|
|
|
286
306
|
return dynObj;
|
|
287
307
|
}
|
|
288
308
|
function Decode_isIgnorableYamlNoise(value) {
|
|
289
|
-
let matchResult;
|
|
309
|
+
let matchResult = void 0;
|
|
290
310
|
switch (value.tag) {
|
|
291
311
|
case /* Comment */
|
|
292
312
|
4: {
|
|
@@ -315,11 +335,11 @@ function Decode_isIgnorableYamlNoise(value) {
|
|
|
315
335
|
}
|
|
316
336
|
}
|
|
317
337
|
function Decode_tryGetPresentField(fieldName, decoder, value) {
|
|
318
|
-
let matchResult, fields_1;
|
|
338
|
+
let matchResult = void 0, fields_1 = void 0;
|
|
319
339
|
if (value.tag === /* Object */
|
|
320
340
|
3) {
|
|
321
341
|
if (exists((_arg) => {
|
|
322
|
-
let matchResult_1, key_1;
|
|
342
|
+
let matchResult_1 = void 0, key_1 = void 0;
|
|
323
343
|
if (_arg.tag === /* Mapping */
|
|
324
344
|
0) {
|
|
325
345
|
if (_arg.fields[0].Value === fieldName) {
|
|
@@ -366,11 +386,11 @@ function Decode_tryGetYamlField(fieldName, value) {
|
|
|
366
386
|
return Decode_tryGetPresentField(fieldName, (x) => x, value);
|
|
367
387
|
}
|
|
368
388
|
function Decode_tryGetIntArrayField(fieldName, value) {
|
|
369
|
-
return Decode_tryGetPresentField(fieldName, (value_1) => resizearray(int, value_1), value);
|
|
389
|
+
return Decode_tryGetPresentField(fieldName, (value_1) => resizearray((value_2) => int(value_2) | 0, value_1), value);
|
|
370
390
|
}
|
|
371
391
|
function Decode_tryGetInt64Field(fieldName, value) {
|
|
372
392
|
return Decode_tryGetPresentField(fieldName, (_arg) => {
|
|
373
|
-
let matchResult, scalar, other;
|
|
393
|
+
let matchResult = void 0, scalar = void 0, other = void 0;
|
|
374
394
|
switch (_arg.tag) {
|
|
375
395
|
case /* Value */
|
|
376
396
|
1: {
|
|
@@ -415,23 +435,24 @@ function Decode_tryGetInt64Field(fieldName, value) {
|
|
|
415
435
|
if (matchValue[0]) {
|
|
416
436
|
return matchValue[1];
|
|
417
437
|
} else {
|
|
418
|
-
throw
|
|
438
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid int64 value for ", fieldName, ": ", scalar.Value));
|
|
419
439
|
}
|
|
420
440
|
}
|
|
421
441
|
default:
|
|
422
|
-
throw
|
|
442
|
+
throw ArgumentException_$ctor_Z721C83C5(`Invalid int64 value for ${fieldName}: ${other}`);
|
|
423
443
|
}
|
|
424
444
|
}, value);
|
|
425
445
|
}
|
|
426
446
|
function Decode_tryGetLoadListingField(fieldName, value$1) {
|
|
427
|
-
|
|
428
|
-
|
|
429
|
-
|
|
430
|
-
|
|
431
|
-
|
|
432
|
-
|
|
433
|
-
|
|
434
|
-
|
|
447
|
+
let loadListingValue = void 0, matchValue = void 0;
|
|
448
|
+
const option_1 = Decode_tryGetStringField(fieldName, value$1);
|
|
449
|
+
if (option_1 != null) {
|
|
450
|
+
return loadListingValue = value(option_1), matchValue = LoadListingEnum_tryParse_Z721C83C5(loadListingValue), matchValue == null ? (() => {
|
|
451
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid loadListing value '", loadListingValue, "'. Expected one of: no_listing, shallow_listing, deep_listing."));
|
|
452
|
+
})() : value(matchValue);
|
|
453
|
+
} else {
|
|
454
|
+
return void 0;
|
|
455
|
+
}
|
|
435
456
|
}
|
|
436
457
|
function Decode_overflowIntoDynamicObj(dynObj, knownFields, value) {
|
|
437
458
|
if (value.tag === /* Object */
|
|
@@ -451,7 +472,7 @@ function Decode_decodeDirectoryInstanceFields(element) {
|
|
|
451
472
|
return directory;
|
|
452
473
|
}
|
|
453
474
|
function Decode_decodeSchemaSaladString(yEle) {
|
|
454
|
-
let matchResult, v, c, v_1;
|
|
475
|
+
let matchResult = void 0, v = void 0, c = void 0, v_1 = void 0;
|
|
455
476
|
switch (yEle.tag) {
|
|
456
477
|
case /* Value */
|
|
457
478
|
1: {
|
|
@@ -542,7 +563,7 @@ function Decode_decodeSchemaSaladString(yEle) {
|
|
|
542
563
|
}
|
|
543
564
|
}
|
|
544
565
|
default:
|
|
545
|
-
throw
|
|
566
|
+
throw ArgumentException_$ctor_Z721C83C5(`Unexpected YAMLElement format in decodeSchemaSaladString: ${interpolate("%A%P()", [yEle])}`);
|
|
546
567
|
}
|
|
547
568
|
}
|
|
548
569
|
function Decode_decodeStringOrExpression(yEle) {
|
|
@@ -550,7 +571,7 @@ function Decode_decodeStringOrExpression(yEle) {
|
|
|
550
571
|
}
|
|
551
572
|
function Decode_outputBindingGlobDecoder(value) {
|
|
552
573
|
return object((get$) => {
|
|
553
|
-
let objectArg, objectArg_1, objectArg_2;
|
|
574
|
+
let objectArg = void 0, objectArg_1 = void 0, objectArg_2 = void 0;
|
|
554
575
|
const binding = new OutputBinding(unwrap((objectArg = get$.Optional, objectArg.Field("glob", string))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("loadContents", bool))), unwrap(Decode_tryGetLoadListingField("loadListing", value)), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("outputEval", string))));
|
|
555
576
|
Decode_overflowIntoDynamicObj(binding, toList(OutputBinding.KnownFieldNames), value);
|
|
556
577
|
return binding;
|
|
@@ -561,7 +582,7 @@ const Decode_outputBindingDecoder = (value_1) => object((get$) => {
|
|
|
561
582
|
return objectArg.Field("outputBinding", Decode_outputBindingGlobDecoder);
|
|
562
583
|
}, value_1);
|
|
563
584
|
function Decode_decodeStringArrayOrScalar(value) {
|
|
564
|
-
let matchResult, items;
|
|
585
|
+
let matchResult = void 0, items = void 0;
|
|
565
586
|
switch (value.tag) {
|
|
566
587
|
case /* Object */
|
|
567
588
|
3: {
|
|
@@ -593,7 +614,7 @@ function Decode_decodeStringArrayOrScalar(value) {
|
|
|
593
614
|
}
|
|
594
615
|
switch (matchResult) {
|
|
595
616
|
case 0: {
|
|
596
|
-
const collection = map
|
|
617
|
+
const collection = map(Decode_decodeStringOrExpression, items);
|
|
597
618
|
return Array.from(collection);
|
|
598
619
|
}
|
|
599
620
|
default:
|
|
@@ -606,7 +627,7 @@ const Decode_outputSourceDecoder = (value_1) => object((get$) => {
|
|
|
606
627
|
}, value_1);
|
|
607
628
|
function Decode_direntDecoder(value) {
|
|
608
629
|
return object((get$) => {
|
|
609
|
-
let objectArg, objectArg_1, objectArg_2;
|
|
630
|
+
let objectArg = void 0, objectArg_1 = void 0, objectArg_2 = void 0;
|
|
610
631
|
const dirent = new DirentInstance((objectArg = get$.Required, objectArg.Field("entry", Decode_decodeSchemaSaladString)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("entryname", Decode_decodeSchemaSaladString))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("writable", bool))));
|
|
611
632
|
Decode_overflowIntoDynamicObj(dirent, toList(DirentInstance.KnownFieldNames), value);
|
|
612
633
|
return CWLType_Dirent(dirent);
|
|
@@ -618,7 +639,7 @@ function Decode_initialWorkDirEntryDecoder(value$1) {
|
|
|
618
639
|
3: {
|
|
619
640
|
const mappings = value$1.fields[0];
|
|
620
641
|
if (exists((_arg) => {
|
|
621
|
-
let matchResult, k_1;
|
|
642
|
+
let matchResult = void 0, k_1 = void 0;
|
|
622
643
|
if (_arg.tag === /* Mapping */
|
|
623
644
|
0) {
|
|
624
645
|
if (_arg.fields[0].Value === "entry") {
|
|
@@ -642,12 +663,11 @@ function Decode_initialWorkDirEntryDecoder(value$1) {
|
|
|
642
663
|
2) {
|
|
643
664
|
return InitialWorkDirEntry_DirentEntry(matchValue.fields[0]);
|
|
644
665
|
} else {
|
|
645
|
-
throw
|
|
666
|
+
throw ArgumentException_$ctor_Z721C83C5("Unexpected InitialWorkDir Dirent decoding result.");
|
|
646
667
|
}
|
|
647
668
|
} else {
|
|
648
669
|
const classValue = tryPick((_arg_1) => {
|
|
649
|
-
let
|
|
650
|
-
let matchResult_1, k_4, v_2, k_5, v_3;
|
|
670
|
+
let matchResult_1 = void 0, k_4 = void 0, v_2 = void 0, k_5 = void 0, v_3 = void 0;
|
|
651
671
|
if (_arg_1.tag === /* Mapping */
|
|
652
672
|
0) {
|
|
653
673
|
switch (_arg_1.fields[1].tag) {
|
|
@@ -657,7 +677,7 @@ function Decode_initialWorkDirEntryDecoder(value$1) {
|
|
|
657
677
|
if (head(_arg_1.fields[1].fields[0]).tag === /* Value */
|
|
658
678
|
1) {
|
|
659
679
|
if (isEmpty(tail(_arg_1.fields[1].fields[0]))) {
|
|
660
|
-
if (
|
|
680
|
+
if (head(_arg_1.fields[1].fields[0]).fields[0], _arg_1.fields[0].Value === "class") {
|
|
661
681
|
matchResult_1 = 0;
|
|
662
682
|
k_4 = _arg_1.fields[0];
|
|
663
683
|
v_2 = head(_arg_1.fields[1].fields[0]).fields[0];
|
|
@@ -677,7 +697,7 @@ function Decode_initialWorkDirEntryDecoder(value$1) {
|
|
|
677
697
|
}
|
|
678
698
|
case /* Value */
|
|
679
699
|
1: {
|
|
680
|
-
if (
|
|
700
|
+
if (_arg_1.fields[1].fields[0], _arg_1.fields[0].Value === "class") {
|
|
681
701
|
matchResult_1 = 1;
|
|
682
702
|
k_5 = _arg_1.fields[0];
|
|
683
703
|
v_3 = _arg_1.fields[1].fields[0];
|
|
@@ -701,7 +721,7 @@ function Decode_initialWorkDirEntryDecoder(value$1) {
|
|
|
701
721
|
return void 0;
|
|
702
722
|
}
|
|
703
723
|
}, mappings);
|
|
704
|
-
let matchResult_2;
|
|
724
|
+
let matchResult_2 = void 0;
|
|
705
725
|
if (classValue != null) {
|
|
706
726
|
switch (value(classValue)) {
|
|
707
727
|
case "File": {
|
|
@@ -732,7 +752,7 @@ function Decode_initialWorkDirEntryDecoder(value$1) {
|
|
|
732
752
|
1:
|
|
733
753
|
return InitialWorkDirEntry_StringEntry(Decode_decodeSchemaSaladString(value$1));
|
|
734
754
|
default:
|
|
735
|
-
throw
|
|
755
|
+
throw ArgumentException_$ctor_Z721C83C5(`Invalid InitialWorkDir listing entry: ${interpolate("%A%P()", [value$1])}`);
|
|
736
756
|
}
|
|
737
757
|
}
|
|
738
758
|
function Decode_cwlSimpleTypeFromString(s) {
|
|
@@ -742,23 +762,23 @@ function Decode_cwlSimpleTypeFromString(s) {
|
|
|
742
762
|
case "Directory":
|
|
743
763
|
return CWLType_Directory(new DirectoryInstance());
|
|
744
764
|
case "string":
|
|
745
|
-
return
|
|
765
|
+
return CWLType.String$;
|
|
746
766
|
case "int":
|
|
747
|
-
return
|
|
767
|
+
return CWLType.Int;
|
|
748
768
|
case "long":
|
|
749
|
-
return
|
|
769
|
+
return CWLType.Long;
|
|
750
770
|
case "float":
|
|
751
|
-
return
|
|
771
|
+
return CWLType.Float;
|
|
752
772
|
case "double":
|
|
753
|
-
return
|
|
773
|
+
return CWLType.Double;
|
|
754
774
|
case "boolean":
|
|
755
|
-
return
|
|
775
|
+
return CWLType.Boolean$;
|
|
756
776
|
case "stdout":
|
|
757
|
-
return
|
|
777
|
+
return CWLType.Stdout;
|
|
758
778
|
case "null":
|
|
759
|
-
return
|
|
779
|
+
return CWLType.Null;
|
|
760
780
|
default:
|
|
761
|
-
throw
|
|
781
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid CWL simple type: ", s));
|
|
762
782
|
}
|
|
763
783
|
}
|
|
764
784
|
function Decode_parseArrayShorthand(typeStr) {
|
|
@@ -767,7 +787,7 @@ function Decode_parseArrayShorthand(typeStr) {
|
|
|
767
787
|
const matchValue = Decode_parseArrayShorthand(innerType);
|
|
768
788
|
if (matchValue == null) {
|
|
769
789
|
try {
|
|
770
|
-
return CWLType_Array(new InputArraySchema(Decode_cwlSimpleTypeFromString(innerType)));
|
|
790
|
+
return CWLType_Array$(new InputArraySchema(Decode_cwlSimpleTypeFromString(innerType)));
|
|
771
791
|
} catch (matchValue_1) {
|
|
772
792
|
if (Decode_isRecoverableDecodingError(matchValue_1)) {
|
|
773
793
|
return void 0;
|
|
@@ -776,7 +796,7 @@ function Decode_parseArrayShorthand(typeStr) {
|
|
|
776
796
|
}
|
|
777
797
|
}
|
|
778
798
|
} else {
|
|
779
|
-
return CWLType_Array(new InputArraySchema(value(matchValue)));
|
|
799
|
+
return CWLType_Array$(new InputArraySchema(value(matchValue)));
|
|
780
800
|
}
|
|
781
801
|
} else {
|
|
782
802
|
return void 0;
|
|
@@ -784,7 +804,7 @@ function Decode_parseArrayShorthand(typeStr) {
|
|
|
784
804
|
}
|
|
785
805
|
function Decode_inputArraySchemaDecoder(value) {
|
|
786
806
|
return object((get$) => {
|
|
787
|
-
let objectArg, objectArg_1, objectArg_2, objectArg_3;
|
|
807
|
+
let objectArg = void 0, objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0;
|
|
788
808
|
const schema = new InputArraySchema(Decode_cwlTypeDecoder$0027((objectArg = get$.Required, objectArg.Field("items", (x) => x))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("label", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("doc", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("name", string))));
|
|
789
809
|
Decode_overflowIntoDynamicObj(schema, toList(InputArraySchema.KnownFieldNames), value);
|
|
790
810
|
return schema;
|
|
@@ -792,7 +812,7 @@ function Decode_inputArraySchemaDecoder(value) {
|
|
|
792
812
|
}
|
|
793
813
|
function Decode_inputRecordFieldDecoder(value) {
|
|
794
814
|
return object((get$) => {
|
|
795
|
-
let objectArg, objectArg_1, objectArg_2, objectArg_3;
|
|
815
|
+
let objectArg = void 0, objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0;
|
|
796
816
|
const field = new InputRecordField((objectArg = get$.Required, objectArg.Field("name", string)), Decode_cwlTypeDecoder$0027((objectArg_1 = get$.Required, objectArg_1.Field("type", (x) => x))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("doc", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("label", string))));
|
|
797
817
|
Decode_overflowIntoDynamicObj(field, toList(InputRecordField.KnownFieldNames), value);
|
|
798
818
|
return field;
|
|
@@ -834,7 +854,7 @@ function Decode_tryDecodeFieldsAsMap(element) {
|
|
|
834
854
|
}
|
|
835
855
|
function Decode_inputRecordSchemaDecoder(value$1) {
|
|
836
856
|
return object((get$) => {
|
|
837
|
-
let fieldsElement, objectArg, element, matchValue, objectArg_1, objectArg_2, objectArg_3;
|
|
857
|
+
let fieldsElement = void 0, objectArg = void 0, element = void 0, matchValue = void 0, objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0;
|
|
838
858
|
const schema = new InputRecordSchema(unwrap((fieldsElement = (objectArg = get$.Optional, objectArg.Field("fields", (x) => x)), fieldsElement == null ? void 0 : value(fieldsElement).tag === /* Object */
|
|
839
859
|
3 ? isEmpty(value(fieldsElement).fields[0]) ? [] : (element = value(fieldsElement), matchValue = Decode_tryDecodeFieldsAsArray(element), matchValue == null ? Decode_tryDecodeFieldsAsMap(element) : value(matchValue)) : (element = value(fieldsElement), matchValue = Decode_tryDecodeFieldsAsArray(element), matchValue == null ? Decode_tryDecodeFieldsAsMap(element) : value(matchValue)))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("label", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("doc", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("name", string))));
|
|
840
860
|
Decode_overflowIntoDynamicObj(schema, toList(InputRecordSchema.KnownFieldNames), value$1);
|
|
@@ -843,20 +863,14 @@ function Decode_inputRecordSchemaDecoder(value$1) {
|
|
|
843
863
|
}
|
|
844
864
|
function Decode_inputEnumSchemaDecoder(value) {
|
|
845
865
|
return object((get$) => {
|
|
846
|
-
let objectArg_1, objectArg_2, objectArg_3;
|
|
847
|
-
|
|
848
|
-
const objectArg = get$.Required;
|
|
849
|
-
symbols = objectArg.Field("symbols", (value_1) => resizearray(string, value_1));
|
|
850
|
-
if (symbols.length === 0) {
|
|
851
|
-
throw new Error("CWL enum schema must define at least one symbol.");
|
|
852
|
-
}
|
|
853
|
-
const schema = new InputEnumSchema(symbols, unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("label", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("doc", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("name", string))));
|
|
866
|
+
let objectArg = void 0, objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0;
|
|
867
|
+
const schema = new InputEnumSchema((objectArg = get$.Required, objectArg.Field("symbols", (value_1) => resizearray(string, value_1))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("label", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("doc", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("name", string))));
|
|
854
868
|
Decode_overflowIntoDynamicObj(schema, toList(InputEnumSchema.KnownFieldNames), value);
|
|
855
869
|
return schema;
|
|
856
870
|
}, value);
|
|
857
871
|
}
|
|
858
872
|
function Decode_cwlTypeDecoder$0027(element) {
|
|
859
|
-
let collection;
|
|
873
|
+
let collection = void 0;
|
|
860
874
|
const parseTypeString = (typeStr) => {
|
|
861
875
|
const patternInput = typeStr.endsWith("?") ? [replace(typeStr, "?", ""), true] : [typeStr, false];
|
|
862
876
|
const stripped = patternInput[0];
|
|
@@ -864,12 +878,12 @@ function Decode_cwlTypeDecoder$0027(element) {
|
|
|
864
878
|
const matchValue = Decode_parseArrayShorthand(stripped);
|
|
865
879
|
baseType = matchValue == null ? Decode_cwlSimpleTypeFromString(stripped) : value(matchValue);
|
|
866
880
|
if (patternInput[1]) {
|
|
867
|
-
return CWLType_Union([
|
|
881
|
+
return CWLType_Union([CWLType.Null, baseType]);
|
|
868
882
|
} else {
|
|
869
883
|
return baseType;
|
|
870
884
|
}
|
|
871
885
|
};
|
|
872
|
-
let matchResult, v, items;
|
|
886
|
+
let matchResult = void 0, v = void 0, items = void 0;
|
|
873
887
|
switch (element.tag) {
|
|
874
888
|
case /* Value */
|
|
875
889
|
1: {
|
|
@@ -922,14 +936,14 @@ function Decode_cwlTypeDecoder$0027(element) {
|
|
|
922
936
|
case 0:
|
|
923
937
|
return parseTypeString(v.Value);
|
|
924
938
|
case 1:
|
|
925
|
-
return CWLType_Union((collection = map
|
|
939
|
+
return CWLType_Union((collection = map(Decode_cwlTypeDecoder$0027, items), Array.from(collection)));
|
|
926
940
|
case 2:
|
|
927
941
|
return object((get$) => {
|
|
928
|
-
let objectArg_1;
|
|
942
|
+
let objectArg_1 = void 0;
|
|
929
943
|
let typeField;
|
|
930
944
|
const objectArg = get$.Optional;
|
|
931
945
|
typeField = objectArg.Field("type", (x) => x);
|
|
932
|
-
let matchResult_1, v_1;
|
|
946
|
+
let matchResult_1 = void 0, v_1 = void 0;
|
|
933
947
|
if (typeField != null) {
|
|
934
948
|
if (value(typeField).tag === /* Object */
|
|
935
949
|
3) {
|
|
@@ -963,7 +977,7 @@ function Decode_cwlTypeDecoder$0027(element) {
|
|
|
963
977
|
case "enum":
|
|
964
978
|
return CWLType_Enum(Decode_inputEnumSchemaDecoder(element));
|
|
965
979
|
case "array":
|
|
966
|
-
return CWLType_Array(Decode_inputArraySchemaDecoder(element));
|
|
980
|
+
return CWLType_Array$(Decode_inputArraySchemaDecoder(element));
|
|
967
981
|
default: {
|
|
968
982
|
const typeStr_1 = matchValue_1;
|
|
969
983
|
const patternInput_1 = typeStr_1.endsWith("?") ? [replace(typeStr_1, "?", ""), true] : [typeStr_1, false];
|
|
@@ -972,11 +986,11 @@ function Decode_cwlTypeDecoder$0027(element) {
|
|
|
972
986
|
switch (stripped_1) {
|
|
973
987
|
case "File": {
|
|
974
988
|
const baseType_1 = CWLType_File(Decode_decodeFileInstanceFields(element));
|
|
975
|
-
return isOptional_1 ? CWLType_Union([
|
|
989
|
+
return isOptional_1 ? CWLType_Union([CWLType.Null, baseType_1]) : baseType_1;
|
|
976
990
|
}
|
|
977
991
|
case "Directory": {
|
|
978
992
|
const baseType_2 = CWLType_Directory(Decode_decodeDirectoryInstanceFields(element));
|
|
979
|
-
return isOptional_1 ? CWLType_Union([
|
|
993
|
+
return isOptional_1 ? CWLType_Union([CWLType.Null, baseType_2]) : baseType_2;
|
|
980
994
|
}
|
|
981
995
|
default:
|
|
982
996
|
return parseTypeString(typeStr_1);
|
|
@@ -987,11 +1001,11 @@ function Decode_cwlTypeDecoder$0027(element) {
|
|
|
987
1001
|
case 1:
|
|
988
1002
|
return Decode_cwlTypeDecoder$0027((objectArg_1 = get$.Required, objectArg_1.Field("type", (x_1) => x_1)));
|
|
989
1003
|
default:
|
|
990
|
-
throw
|
|
1004
|
+
throw ArgumentException_$ctor_Z721C83C5("Unexpected type format in cwlTypeDecoder'");
|
|
991
1005
|
}
|
|
992
1006
|
}, element);
|
|
993
1007
|
default:
|
|
994
|
-
throw
|
|
1008
|
+
throw ArgumentException_$ctor_Z721C83C5("Unexpected YAMLElement in cwlTypeDecoder'");
|
|
995
1009
|
}
|
|
996
1010
|
}
|
|
997
1011
|
function Decode_cwlTypeStringMatcher(t, get$) {
|
|
@@ -1016,51 +1030,51 @@ function Decode_cwlTypeStringMatcher(t, get$) {
|
|
|
1016
1030
|
break;
|
|
1017
1031
|
}
|
|
1018
1032
|
case "string": {
|
|
1019
|
-
cwlType =
|
|
1033
|
+
cwlType = CWLType.String$;
|
|
1020
1034
|
break;
|
|
1021
1035
|
}
|
|
1022
1036
|
case "int": {
|
|
1023
|
-
cwlType =
|
|
1037
|
+
cwlType = CWLType.Int;
|
|
1024
1038
|
break;
|
|
1025
1039
|
}
|
|
1026
1040
|
case "long": {
|
|
1027
|
-
cwlType =
|
|
1041
|
+
cwlType = CWLType.Long;
|
|
1028
1042
|
break;
|
|
1029
1043
|
}
|
|
1030
1044
|
case "float": {
|
|
1031
|
-
cwlType =
|
|
1045
|
+
cwlType = CWLType.Float;
|
|
1032
1046
|
break;
|
|
1033
1047
|
}
|
|
1034
1048
|
case "double": {
|
|
1035
|
-
cwlType =
|
|
1049
|
+
cwlType = CWLType.Double;
|
|
1036
1050
|
break;
|
|
1037
1051
|
}
|
|
1038
1052
|
case "boolean": {
|
|
1039
|
-
cwlType =
|
|
1053
|
+
cwlType = CWLType.Boolean$;
|
|
1040
1054
|
break;
|
|
1041
1055
|
}
|
|
1042
1056
|
case "stdout": {
|
|
1043
|
-
cwlType =
|
|
1057
|
+
cwlType = CWLType.Stdout;
|
|
1044
1058
|
break;
|
|
1045
1059
|
}
|
|
1046
1060
|
case "null": {
|
|
1047
|
-
cwlType =
|
|
1061
|
+
cwlType = CWLType.Null;
|
|
1048
1062
|
break;
|
|
1049
1063
|
}
|
|
1050
1064
|
default:
|
|
1051
|
-
throw new
|
|
1065
|
+
throw new Exception("Invalid CWL type");
|
|
1052
1066
|
}
|
|
1053
1067
|
} else {
|
|
1054
1068
|
cwlType = value(matchValue);
|
|
1055
1069
|
}
|
|
1056
|
-
return [optional ? CWLType_Union([
|
|
1070
|
+
return [optional ? CWLType_Union([CWLType.Null, cwlType]) : cwlType, optional];
|
|
1057
1071
|
}
|
|
1058
1072
|
const Decode_cwlTypeDecoder = (value_1) => object((get$) => {
|
|
1059
|
-
let objectArg_1;
|
|
1073
|
+
let objectArg_1 = void 0;
|
|
1060
1074
|
let cwlType;
|
|
1061
1075
|
const objectArg = get$.Required;
|
|
1062
1076
|
cwlType = objectArg.Field("type", (value) => {
|
|
1063
|
-
let matchResult, v, o;
|
|
1077
|
+
let matchResult = void 0, v = void 0, o = void 0;
|
|
1064
1078
|
switch (value.tag) {
|
|
1065
1079
|
case /* Value */
|
|
1066
1080
|
1: {
|
|
@@ -1106,7 +1120,7 @@ const Decode_cwlTypeDecoder = (value_1) => object((get$) => {
|
|
|
1106
1120
|
case 2:
|
|
1107
1121
|
return void 0;
|
|
1108
1122
|
default:
|
|
1109
|
-
throw
|
|
1123
|
+
throw ArgumentException_$ctor_Z721C83C5("Unexpected YAMLElement in cwlTypeDecoder");
|
|
1110
1124
|
}
|
|
1111
1125
|
});
|
|
1112
1126
|
if (cwlType == null) {
|
|
@@ -1116,14 +1130,14 @@ const Decode_cwlTypeDecoder = (value_1) => object((get$) => {
|
|
|
1116
1130
|
}
|
|
1117
1131
|
}, value_1);
|
|
1118
1132
|
function Decode_decodeNamedOutput(name, value$1) {
|
|
1119
|
-
let v, values, values_1;
|
|
1133
|
+
let v = void 0, values = void 0, values_1 = void 0;
|
|
1120
1134
|
const outputBinding = Decode_outputBindingDecoder(value$1);
|
|
1121
1135
|
const outputSourceValues = Decode_outputSourceDecoder(value$1);
|
|
1122
1136
|
const output = new CWLOutput(name, value$1.tag === /* Object */
|
|
1123
1137
|
3 ? !isEmpty(value$1.fields[0]) ? head(value$1.fields[0]).tag === /* Value */
|
|
1124
1138
|
1 ? isEmpty(tail(value$1.fields[0])) ? (v = head(value$1.fields[0]).fields[0], Decode_cwlTypeStringMatcher(v.Value, defaultOf())[0]) : Decode_cwlTypeDecoder(value$1)[0] : Decode_cwlTypeDecoder(value$1)[0] : Decode_cwlTypeDecoder(value$1)[0] : Decode_cwlTypeDecoder(value$1)[0], void 0, void 0, unwrap(Decode_tryGetStringField("label", value$1)), unwrap(Decode_tryGetYamlField("secondaryFiles", value$1)), unwrap(Decode_tryGetBoolField("streamable", value$1)), unwrap(Decode_tryGetStringField("doc", value$1)), unwrap(Decode_tryGetStringField("format", value$1)));
|
|
1125
1139
|
output.OutputBinding = outputBinding;
|
|
1126
|
-
let matchResult, values_2, values_3;
|
|
1140
|
+
let matchResult = void 0, values_2 = void 0, values_3 = void 0;
|
|
1127
1141
|
if (outputSourceValues != null) {
|
|
1128
1142
|
if (values = value(outputSourceValues), values.length > 1) {
|
|
1129
1143
|
matchResult = 0;
|
|
@@ -1143,7 +1157,7 @@ function Decode_decodeNamedOutput(name, value$1) {
|
|
|
1143
1157
|
break;
|
|
1144
1158
|
}
|
|
1145
1159
|
case 1: {
|
|
1146
|
-
output.OutputSource = OutputSource_Single(values_3
|
|
1160
|
+
output.OutputSource = OutputSource_Single(item(0, values_3));
|
|
1147
1161
|
break;
|
|
1148
1162
|
}
|
|
1149
1163
|
}
|
|
@@ -1164,7 +1178,7 @@ function Decode_decodeOutputSequenceItem(warnings, path, index, item) {
|
|
|
1164
1178
|
}
|
|
1165
1179
|
}
|
|
1166
1180
|
function Decode_outputArrayDecoderWithWarnings(warnings, path, value) {
|
|
1167
|
-
let matchResult, items;
|
|
1181
|
+
let matchResult = void 0, items = void 0;
|
|
1168
1182
|
switch (value.tag) {
|
|
1169
1183
|
case /* Object */
|
|
1170
1184
|
3: {
|
|
@@ -1201,7 +1215,7 @@ function Decode_outputArrayDecoderWithWarnings(warnings, path, value) {
|
|
|
1201
1215
|
}
|
|
1202
1216
|
default: {
|
|
1203
1217
|
const dict = object((get$) => get$.Overflow.FieldList(empty()), value);
|
|
1204
|
-
const collection_1 = toArray(delay(() => map$
|
|
1218
|
+
const collection_1 = toArray(delay(() => map$1((key) => Decode_decodeNamedOutput(key, getItemFromDict(dict, key)), dict.keys())));
|
|
1205
1219
|
return Array.from(collection_1);
|
|
1206
1220
|
}
|
|
1207
1221
|
}
|
|
@@ -1215,8 +1229,12 @@ function Decode_outputsDecoderWithWarnings(warnings) {
|
|
|
1215
1229
|
}
|
|
1216
1230
|
const Decode_outputsDecoder = Decode_outputsDecoderWithWarnings(void 0);
|
|
1217
1231
|
function Decode_dockerRequirementDecoder(get$) {
|
|
1218
|
-
let
|
|
1219
|
-
|
|
1232
|
+
let objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0, objectArg_4 = void 0, objectArg_5 = void 0, objectArg_6 = void 0;
|
|
1233
|
+
let dockerFile;
|
|
1234
|
+
let option_1;
|
|
1235
|
+
const objectArg = get$.Optional;
|
|
1236
|
+
option_1 = objectArg.Field("dockerFile", (x) => x);
|
|
1237
|
+
dockerFile = option_1 != null ? Decode_decodeSchemaSaladString(value(option_1)) : void 0;
|
|
1220
1238
|
return DockerRequirement.create(unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("dockerPull", string))), void 0, unwrap(dockerFile), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("dockerImageId", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("dockerLoad", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("dockerImport", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("dockerOutputDirectory", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("cwltool:dockerRunOptions", Decode_decodeStringArrayOrScalar))));
|
|
1221
1239
|
}
|
|
1222
1240
|
function Decode_envVarRequirementDecoder(get$) {
|
|
@@ -1224,7 +1242,7 @@ function Decode_envVarRequirementDecoder(get$) {
|
|
|
1224
1242
|
let _arg;
|
|
1225
1243
|
const objectArg = get$.Required;
|
|
1226
1244
|
_arg = objectArg.Field("envDef", (x) => x);
|
|
1227
|
-
let matchResult, sequence, mappings, other;
|
|
1245
|
+
let matchResult = void 0, sequence = void 0, mappings = void 0, other = void 0;
|
|
1228
1246
|
if (_arg.tag === /* Object */
|
|
1229
1247
|
3) {
|
|
1230
1248
|
if (!isEmpty(_arg.fields[0])) {
|
|
@@ -1270,7 +1288,7 @@ function Decode_envVarRequirementDecoder(get$) {
|
|
|
1270
1288
|
break;
|
|
1271
1289
|
}
|
|
1272
1290
|
case 1: {
|
|
1273
|
-
envDefElement = YAMLElement_Object(mappings);
|
|
1291
|
+
envDefElement = YAMLElement_Object$(mappings);
|
|
1274
1292
|
break;
|
|
1275
1293
|
}
|
|
1276
1294
|
default:
|
|
@@ -1280,7 +1298,7 @@ function Decode_envVarRequirementDecoder(get$) {
|
|
|
1280
1298
|
case /* Sequence */
|
|
1281
1299
|
2:
|
|
1282
1300
|
return resizearray((value_1) => object((get2) => {
|
|
1283
|
-
let objectArg_1, objectArg_2;
|
|
1301
|
+
let objectArg_1 = void 0, objectArg_2 = void 0;
|
|
1284
1302
|
const env = new EnvironmentDef((objectArg_1 = get2.Required, objectArg_1.Field("envName", string)), (objectArg_2 = get2.Required, objectArg_2.Field("envValue", string)));
|
|
1285
1303
|
Decode_overflowIntoDynamicObj(env, toList(EnvironmentDef.KnownFieldNames), value_1);
|
|
1286
1304
|
return env;
|
|
@@ -1288,7 +1306,7 @@ function Decode_envVarRequirementDecoder(get$) {
|
|
|
1288
1306
|
case /* Object */
|
|
1289
1307
|
3: {
|
|
1290
1308
|
const collection = choose((_arg_2) => {
|
|
1291
|
-
let _arg_1, value;
|
|
1309
|
+
let _arg_1 = void 0, value = void 0;
|
|
1292
1310
|
if (_arg_2.tag === /* Mapping */
|
|
1293
1311
|
0) {
|
|
1294
1312
|
return new EnvironmentDef(_arg_2.fields[0].Value, (_arg_1 = _arg_2.fields[1], _arg_1.tag === /* Value */
|
|
@@ -1302,13 +1320,13 @@ function Decode_envVarRequirementDecoder(get$) {
|
|
|
1302
1320
|
return Array.from(collection);
|
|
1303
1321
|
}
|
|
1304
1322
|
default:
|
|
1305
|
-
throw
|
|
1323
|
+
throw ArgumentException_$ctor_Z721C83C5("Invalid envDef format. Expected array or map.");
|
|
1306
1324
|
}
|
|
1307
1325
|
}
|
|
1308
1326
|
function Decode_softwareRequirementDecoder(get$) {
|
|
1309
|
-
let objectArg;
|
|
1327
|
+
let objectArg = void 0;
|
|
1310
1328
|
const normalizeCollectionElement = (_arg) => {
|
|
1311
|
-
let matchResult, sequence, mappings, other;
|
|
1329
|
+
let matchResult = void 0, sequence = void 0, mappings = void 0, other = void 0;
|
|
1312
1330
|
if (_arg.tag === /* Object */
|
|
1313
1331
|
3) {
|
|
1314
1332
|
if (!isEmpty(_arg.fields[0])) {
|
|
@@ -1352,7 +1370,7 @@ function Decode_softwareRequirementDecoder(get$) {
|
|
|
1352
1370
|
case 0:
|
|
1353
1371
|
return YAMLElement_Sequence(sequence);
|
|
1354
1372
|
case 1:
|
|
1355
|
-
return YAMLElement_Object(mappings);
|
|
1373
|
+
return YAMLElement_Object$(mappings);
|
|
1356
1374
|
default:
|
|
1357
1375
|
return other;
|
|
1358
1376
|
}
|
|
@@ -1363,7 +1381,7 @@ function Decode_softwareRequirementDecoder(get$) {
|
|
|
1363
1381
|
case /* Sequence */
|
|
1364
1382
|
2:
|
|
1365
1383
|
return resizearray((value_1) => object((get2) => {
|
|
1366
|
-
let objectArg_1, objectArg_2, objectArg_3;
|
|
1384
|
+
let objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0;
|
|
1367
1385
|
const package$_1 = new SoftwarePackage((objectArg_1 = get2.Required, objectArg_1.Field("package", string)), unwrap((objectArg_2 = get2.Optional, objectArg_2.Field("version", (value_3) => resizearray(string, value_3)))), unwrap((objectArg_3 = get2.Optional, objectArg_3.Field("specs", (value_5) => resizearray(string, value_5)))));
|
|
1368
1386
|
Decode_overflowIntoDynamicObj(package$_1, toList(SoftwarePackage.KnownFieldNames), value_1);
|
|
1369
1387
|
return package$_1;
|
|
@@ -1371,16 +1389,15 @@ function Decode_softwareRequirementDecoder(get$) {
|
|
|
1371
1389
|
case /* Object */
|
|
1372
1390
|
3: {
|
|
1373
1391
|
const collection = choose((_arg_3) => {
|
|
1374
|
-
let packageName, packageValue, normalizedPackageValue, mappings_1, package
|
|
1392
|
+
let packageName = void 0, packageValue = void 0, normalizedPackageValue = void 0, mappings_1 = void 0, package$ = void 0;
|
|
1375
1393
|
if (_arg_3.tag === /* Mapping */
|
|
1376
1394
|
0) {
|
|
1377
1395
|
return packageName = _arg_3.fields[0].Value, packageValue = _arg_3.fields[1], normalizedPackageValue = normalizeCollectionElement(packageValue), normalizedPackageValue.tag === /* Object */
|
|
1378
1396
|
3 ? isEmpty(normalizedPackageValue.fields[0]) ? new SoftwarePackage(packageName) : (mappings_1 = normalizedPackageValue.fields[0], package$ = new SoftwarePackage(packageName, unwrap(tryPick((_arg_1) => {
|
|
1379
|
-
let
|
|
1380
|
-
let matchResult_1, k_1, v_1;
|
|
1397
|
+
let matchResult_1 = void 0, k_1 = void 0, v_1 = void 0;
|
|
1381
1398
|
if (_arg_1.tag === /* Mapping */
|
|
1382
1399
|
0) {
|
|
1383
|
-
if (
|
|
1400
|
+
if (_arg_1.fields[1], _arg_1.fields[0].Value === "version") {
|
|
1384
1401
|
matchResult_1 = 0;
|
|
1385
1402
|
k_1 = _arg_1.fields[0];
|
|
1386
1403
|
v_1 = _arg_1.fields[1];
|
|
@@ -1397,11 +1414,10 @@ function Decode_softwareRequirementDecoder(get$) {
|
|
|
1397
1414
|
return void 0;
|
|
1398
1415
|
}
|
|
1399
1416
|
}, mappings_1)), unwrap(tryPick((_arg_2) => {
|
|
1400
|
-
let
|
|
1401
|
-
let matchResult_2, k_3, v_3;
|
|
1417
|
+
let matchResult_2 = void 0, k_3 = void 0, v_3 = void 0;
|
|
1402
1418
|
if (_arg_2.tag === /* Mapping */
|
|
1403
1419
|
0) {
|
|
1404
|
-
if (
|
|
1420
|
+
if (_arg_2.fields[1], _arg_2.fields[0].Value === "specs") {
|
|
1405
1421
|
matchResult_2 = 0;
|
|
1406
1422
|
k_3 = _arg_2.fields[0];
|
|
1407
1423
|
v_3 = _arg_2.fields[1];
|
|
@@ -1426,14 +1442,14 @@ function Decode_softwareRequirementDecoder(get$) {
|
|
|
1426
1442
|
return Array.from(collection);
|
|
1427
1443
|
}
|
|
1428
1444
|
default:
|
|
1429
|
-
throw
|
|
1445
|
+
throw ArgumentException_$ctor_Z721C83C5("Invalid packages format. Expected array or map.");
|
|
1430
1446
|
}
|
|
1431
1447
|
}
|
|
1432
1448
|
function Decode_initialWorkDirRequirementDecoder(get$) {
|
|
1433
1449
|
let listingElement;
|
|
1434
1450
|
const objectArg = get$.Required;
|
|
1435
1451
|
listingElement = objectArg.Field("listing", (x) => x);
|
|
1436
|
-
let matchResult;
|
|
1452
|
+
let matchResult = void 0;
|
|
1437
1453
|
switch (listingElement.tag) {
|
|
1438
1454
|
case /* Object */
|
|
1439
1455
|
3: {
|
|
@@ -1469,16 +1485,16 @@ function Decode_initialWorkDirRequirementDecoder(get$) {
|
|
|
1469
1485
|
}
|
|
1470
1486
|
}
|
|
1471
1487
|
function Decode_loadListingRequirementDecoder(get$) {
|
|
1472
|
-
let objectArg, matchValue;
|
|
1488
|
+
let objectArg = void 0, matchValue = void 0;
|
|
1473
1489
|
const loadListingValue = defaultArg((objectArg = get$.Optional, objectArg.Field("loadListing", string)), "no_listing");
|
|
1474
1490
|
return new LoadListingRequirementValue((matchValue = LoadListingEnum_tryParse_Z721C83C5(loadListingValue), matchValue == null ? (() => {
|
|
1475
|
-
throw
|
|
1491
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid loadListing value '", loadListingValue, "'. Expected one of: no_listing, shallow_listing, deep_listing."));
|
|
1476
1492
|
})() : value(matchValue)));
|
|
1477
1493
|
}
|
|
1478
1494
|
function Decode_decodeResourceScalar(element) {
|
|
1479
1495
|
let matchValue;
|
|
1480
1496
|
const _arg = element;
|
|
1481
|
-
let matchResult, value$1;
|
|
1497
|
+
let matchResult = void 0, value$1 = void 0;
|
|
1482
1498
|
switch (_arg.tag) {
|
|
1483
1499
|
case /* Value */
|
|
1484
1500
|
1: {
|
|
@@ -1542,8 +1558,14 @@ function Decode_decodeResourceScalar(element) {
|
|
|
1542
1558
|
}
|
|
1543
1559
|
}
|
|
1544
1560
|
function Decode_optionalResourceField(get$, fieldName) {
|
|
1545
|
-
let
|
|
1546
|
-
|
|
1561
|
+
let option_1;
|
|
1562
|
+
const objectArg = get$.Optional;
|
|
1563
|
+
option_1 = objectArg.Field(fieldName, (x) => x);
|
|
1564
|
+
if (option_1 != null) {
|
|
1565
|
+
return some(Decode_decodeResourceScalar(value(option_1)));
|
|
1566
|
+
} else {
|
|
1567
|
+
return void 0;
|
|
1568
|
+
}
|
|
1547
1569
|
}
|
|
1548
1570
|
function Decode_resourceRequirementDecoder(get$) {
|
|
1549
1571
|
return new ResourceRequirementInstance(Decode_optionalResourceField(get$, "coresMin"), Decode_optionalResourceField(get$, "coresMax"), Decode_optionalResourceField(get$, "ramMin"), Decode_optionalResourceField(get$, "ramMax"), Decode_optionalResourceField(get$, "tmpdirMin"), Decode_optionalResourceField(get$, "tmpdirMax"), Decode_optionalResourceField(get$, "outdirMin"), Decode_optionalResourceField(get$, "outdirMax"));
|
|
@@ -1551,7 +1573,7 @@ function Decode_resourceRequirementDecoder(get$) {
|
|
|
1551
1573
|
function Decode_schemaDefRequirementTypeDecoder(value) {
|
|
1552
1574
|
const dict = object((get$) => get$.Overflow.FieldList(empty()), value);
|
|
1553
1575
|
const schemaDefKnownFields = toList(unionMany([SchemaDefRequirementType.KnownFieldNames, InputRecordSchema.KnownFieldNames, InputArraySchema.KnownFieldNames, InputEnumSchema.KnownFieldNames], {
|
|
1554
|
-
Compare: comparePrimitives
|
|
1576
|
+
Compare: (x, y) => comparePrimitives(x, y) | 0
|
|
1555
1577
|
}));
|
|
1556
1578
|
if (dict.has("name")) {
|
|
1557
1579
|
const schema = new SchemaDefRequirementType(Decode_decodeStringOrExpression(getItemFromDict(dict, "name")), Decode_cwlTypeDecoder$0027(value));
|
|
@@ -1559,7 +1581,7 @@ function Decode_schemaDefRequirementTypeDecoder(value) {
|
|
|
1559
1581
|
return schema;
|
|
1560
1582
|
} else {
|
|
1561
1583
|
if (dict.size === 0) {
|
|
1562
|
-
throw
|
|
1584
|
+
throw ArgumentException_$ctor_Z721C83C5("SchemaDefRequirement entry cannot be empty.");
|
|
1563
1585
|
}
|
|
1564
1586
|
const kv = head$1(dict);
|
|
1565
1587
|
const schema_1 = new SchemaDefRequirementType(kv[0], Decode_cwlTypeDecoder$0027(kv[1]));
|
|
@@ -1572,7 +1594,7 @@ function Decode_schemaDefRequirementDecoder(get$) {
|
|
|
1572
1594
|
return objectArg.Field("types", (value) => resizearray(Decode_schemaDefRequirementTypeDecoder, value));
|
|
1573
1595
|
}
|
|
1574
1596
|
function Decode_tryDecodeBoolScalar(element) {
|
|
1575
|
-
let matchResult, value;
|
|
1597
|
+
let matchResult = void 0, value = void 0;
|
|
1576
1598
|
switch (element.tag) {
|
|
1577
1599
|
case /* Value */
|
|
1578
1600
|
1: {
|
|
@@ -1651,11 +1673,11 @@ function Decode_networkAccessRequirementDecoder(get$) {
|
|
|
1651
1673
|
}
|
|
1652
1674
|
}
|
|
1653
1675
|
function Decode_inplaceUpdateRequirementDecoder(get$) {
|
|
1654
|
-
let objectArg;
|
|
1676
|
+
let objectArg = void 0;
|
|
1655
1677
|
return new InplaceUpdateRequirementValue(defaultArg((objectArg = get$.Optional, objectArg.Field("inplaceUpdate", bool)), true));
|
|
1656
1678
|
}
|
|
1657
1679
|
function Decode_toolTimeLimitRequirementDecoder(get$) {
|
|
1658
|
-
let value$1;
|
|
1680
|
+
let value$1 = void 0;
|
|
1659
1681
|
let timeLimitElement;
|
|
1660
1682
|
const objectArg = get$.Required;
|
|
1661
1683
|
timeLimitElement = objectArg.Field("timelimit", (x) => x);
|
|
@@ -1675,7 +1697,7 @@ function Decode_toolTimeLimitRequirementDecoder(get$) {
|
|
|
1675
1697
|
if (compare(matchValue[1], 0n) >= 0) {
|
|
1676
1698
|
return ToolTimeLimitValue_ToolTimeLimitSeconds(matchValue[1]);
|
|
1677
1699
|
} else {
|
|
1678
|
-
throw
|
|
1700
|
+
throw ArgumentException_$ctor_Z721C83C5("ToolTimeLimit timelimit must be non-negative.");
|
|
1679
1701
|
}
|
|
1680
1702
|
} else {
|
|
1681
1703
|
return ToolTimeLimitValue_ToolTimeLimitExpression(Decode_decodeStringOrExpression(timeLimitElement));
|
|
@@ -1683,7 +1705,7 @@ function Decode_toolTimeLimitRequirementDecoder(get$) {
|
|
|
1683
1705
|
}
|
|
1684
1706
|
}
|
|
1685
1707
|
function Decode_inlineJavascriptRequirementDecoder(get$) {
|
|
1686
|
-
let objectArg;
|
|
1708
|
+
let objectArg = void 0;
|
|
1687
1709
|
return new InlineJavascriptRequirementValue(unwrap((objectArg = get$.Optional, objectArg.Field("expressionLib", Decode_decodeStringArrayOrScalar))));
|
|
1688
1710
|
}
|
|
1689
1711
|
function Decode_requirementFromTypeName(cls, get$) {
|
|
@@ -1703,7 +1725,7 @@ function Decode_requirementFromTypeName(cls, get$) {
|
|
|
1703
1725
|
case "EnvVarRequirement":
|
|
1704
1726
|
return Requirement_EnvVarRequirement(Decode_envVarRequirementDecoder(get$));
|
|
1705
1727
|
case "ShellCommandRequirement":
|
|
1706
|
-
return
|
|
1728
|
+
return Requirement.ShellCommandRequirement;
|
|
1707
1729
|
case "ResourceRequirement":
|
|
1708
1730
|
return Requirement_ResourceRequirement(Decode_resourceRequirementDecoder(get$));
|
|
1709
1731
|
case "WorkReuse":
|
|
@@ -1719,15 +1741,15 @@ function Decode_requirementFromTypeName(cls, get$) {
|
|
|
1719
1741
|
case "ToolTimeLimitRequirement":
|
|
1720
1742
|
return Requirement_ToolTimeLimitRequirement(Decode_toolTimeLimitRequirementDecoder(get$));
|
|
1721
1743
|
case "SubworkflowFeatureRequirement":
|
|
1722
|
-
return
|
|
1744
|
+
return Requirement.SubworkflowFeatureRequirement;
|
|
1723
1745
|
case "ScatterFeatureRequirement":
|
|
1724
|
-
return
|
|
1746
|
+
return Requirement.ScatterFeatureRequirement;
|
|
1725
1747
|
case "MultipleInputFeatureRequirement":
|
|
1726
|
-
return
|
|
1748
|
+
return Requirement.MultipleInputFeatureRequirement;
|
|
1727
1749
|
case "StepInputExpressionRequirement":
|
|
1728
|
-
return
|
|
1750
|
+
return Requirement.StepInputExpressionRequirement;
|
|
1729
1751
|
default:
|
|
1730
|
-
throw
|
|
1752
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid or unsupported requirement class: ", cls));
|
|
1731
1753
|
}
|
|
1732
1754
|
}
|
|
1733
1755
|
function Decode_addRequirementPayloadOverflow(element, requirement) {
|
|
@@ -1781,7 +1803,7 @@ function Decode_addRequirementPayloadOverflow(element, requirement) {
|
|
|
1781
1803
|
return requirement;
|
|
1782
1804
|
}
|
|
1783
1805
|
function Decode_requirementArrayDecoder(yEle) {
|
|
1784
|
-
let matchResult, items, other;
|
|
1806
|
+
let matchResult = void 0, items = void 0, other = void 0;
|
|
1785
1807
|
if (yEle.tag === /* Object */
|
|
1786
1808
|
3) {
|
|
1787
1809
|
if (!isEmpty(yEle.fields[0])) {
|
|
@@ -1805,25 +1827,25 @@ function Decode_requirementArrayDecoder(yEle) {
|
|
|
1805
1827
|
}
|
|
1806
1828
|
switch (matchResult) {
|
|
1807
1829
|
case 0: {
|
|
1808
|
-
const collection = map
|
|
1809
|
-
let objectArg;
|
|
1830
|
+
const collection = map((ele) => object((get$) => {
|
|
1831
|
+
let objectArg = void 0;
|
|
1810
1832
|
return Decode_addRequirementPayloadOverflow(ele, Decode_requirementFromTypeName((objectArg = get$.Required, objectArg.Field("class", string)), get$));
|
|
1811
1833
|
}, ele), items);
|
|
1812
1834
|
return Array.from(collection);
|
|
1813
1835
|
}
|
|
1814
1836
|
case 1:
|
|
1815
1837
|
return object((get$_1) => {
|
|
1816
|
-
const collection_1 = map$
|
|
1838
|
+
const collection_1 = map$1((kv) => Decode_addRequirementPayloadOverflow(kv[1], object((get$_2) => Decode_requirementFromTypeName(kv[0], get$_2), kv[1])), get$_1.Overflow.FieldList(empty()));
|
|
1817
1839
|
return Array.from(collection_1);
|
|
1818
1840
|
}, yEle);
|
|
1819
1841
|
default:
|
|
1820
|
-
throw
|
|
1842
|
+
throw ArgumentException_$ctor_Z721C83C5(`Invalid CWL requirements syntax: ${other}`);
|
|
1821
1843
|
}
|
|
1822
1844
|
}
|
|
1823
1845
|
function Decode_tryDecodeKnownRequirementFromElement(element) {
|
|
1824
1846
|
try {
|
|
1825
1847
|
return object((get$) => {
|
|
1826
|
-
let objectArg;
|
|
1848
|
+
let objectArg = void 0;
|
|
1827
1849
|
return Decode_addRequirementPayloadOverflow(element, Decode_requirementFromTypeName((objectArg = get$.Required, objectArg.Field("class", string)), get$));
|
|
1828
1850
|
}, element);
|
|
1829
1851
|
} catch (ex) {
|
|
@@ -1838,7 +1860,7 @@ function Decode_tryDecodeKnownRequirementFromElement(element) {
|
|
|
1838
1860
|
}
|
|
1839
1861
|
if (hintClass == null) {
|
|
1840
1862
|
} else {
|
|
1841
|
-
|
|
1863
|
+
value(hintClass);
|
|
1842
1864
|
}
|
|
1843
1865
|
return void 0;
|
|
1844
1866
|
}
|
|
@@ -1861,7 +1883,7 @@ function Decode_decodeHintElement(element) {
|
|
|
1861
1883
|
}
|
|
1862
1884
|
}
|
|
1863
1885
|
function Decode_hintArrayDecoder(yEle) {
|
|
1864
|
-
let matchResult, items, other_1;
|
|
1886
|
+
let matchResult = void 0, items = void 0, other_1 = void 0;
|
|
1865
1887
|
switch (yEle.tag) {
|
|
1866
1888
|
case /* Object */
|
|
1867
1889
|
3: {
|
|
@@ -1895,16 +1917,16 @@ function Decode_hintArrayDecoder(yEle) {
|
|
|
1895
1917
|
}
|
|
1896
1918
|
switch (matchResult) {
|
|
1897
1919
|
case 0: {
|
|
1898
|
-
const collection = map
|
|
1920
|
+
const collection = map(Decode_decodeHintElement, items);
|
|
1899
1921
|
return Array.from(collection);
|
|
1900
1922
|
}
|
|
1901
1923
|
case 1:
|
|
1902
1924
|
return object((get$) => {
|
|
1903
|
-
const collection_1 = map$
|
|
1904
|
-
let matchValue, mappings;
|
|
1925
|
+
const collection_1 = map$1((kv) => {
|
|
1926
|
+
let matchValue = void 0, mappings = void 0;
|
|
1905
1927
|
return Decode_decodeHintElement((matchValue = kv[1], matchValue.tag === /* Object */
|
|
1906
1928
|
3 ? (mappings = matchValue.fields[0], exists((_arg) => {
|
|
1907
|
-
let matchResult_1, k_1;
|
|
1929
|
+
let matchResult_1 = void 0, k_1 = void 0;
|
|
1908
1930
|
if (_arg.tag === /* Mapping */
|
|
1909
1931
|
0) {
|
|
1910
1932
|
if (_arg.fields[0].Value === "class") {
|
|
@@ -1922,12 +1944,12 @@ function Decode_hintArrayDecoder(yEle) {
|
|
|
1922
1944
|
default:
|
|
1923
1945
|
return false;
|
|
1924
1946
|
}
|
|
1925
|
-
}, mappings) ? kv[1] : YAMLElement_Object(cons(YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("class"), YAMLElement_Object(singleton(YAMLElement_Value(YAMLContent_create_Z1C3A29C9(kv[0]))))), mappings))) : YAMLElement_Object(ofArray([YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("class"), YAMLElement_Object(singleton(YAMLElement_Value(YAMLContent_create_Z1C3A29C9(kv[0]))))), YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("value"), matchValue)]))));
|
|
1947
|
+
}, mappings) ? kv[1] : YAMLElement_Object$(cons(YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("class"), YAMLElement_Object$(singleton(YAMLElement_Value(YAMLContent_create_Z1C3A29C9(kv[0]))))), mappings))) : YAMLElement_Object$(ofArray([YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("class"), YAMLElement_Object$(singleton(YAMLElement_Value(YAMLContent_create_Z1C3A29C9(kv[0]))))), YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("value"), matchValue)]))));
|
|
1926
1948
|
}, get$.Overflow.FieldList(empty()));
|
|
1927
1949
|
return Array.from(collection_1);
|
|
1928
1950
|
}, yEle);
|
|
1929
1951
|
default:
|
|
1930
|
-
throw
|
|
1952
|
+
throw ArgumentException_$ctor_Z721C83C5(`Invalid CWL hints syntax: ${other_1}`);
|
|
1931
1953
|
}
|
|
1932
1954
|
}
|
|
1933
1955
|
const Decode_requirementsDecoder = (value) => object((get$) => {
|
|
@@ -1941,14 +1963,14 @@ const Decode_hintsDecoder = (value) => object((get$) => {
|
|
|
1941
1963
|
const Decode_inputBindingDecoder = (value_9) => object((get$) => {
|
|
1942
1964
|
const objectArg = get$.Optional;
|
|
1943
1965
|
return objectArg.Field("inputBinding", (value) => object((get$0027) => {
|
|
1944
|
-
let objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7;
|
|
1945
|
-
const binding = new InputBinding(unwrap((objectArg_1 = get$0027.Optional, objectArg_1.Field("prefix", string))), unwrap((objectArg_2 = get$0027.Optional, objectArg_2.Field("position", int))), unwrap((objectArg_3 = get$0027.Optional, objectArg_3.Field("itemSeparator", string))), unwrap((objectArg_4 = get$0027.Optional, objectArg_4.Field("separate", bool))), unwrap((objectArg_5 = get$0027.Optional, objectArg_5.Field("loadContents", bool))), unwrap((objectArg_6 = get$0027.Optional, objectArg_6.Field("valueFrom", string))), unwrap((objectArg_7 = get$0027.Optional, objectArg_7.Field("shellQuote", bool))));
|
|
1966
|
+
let objectArg_1 = void 0, objectArg_2 = void 0, objectArg_3 = void 0, objectArg_4 = void 0, objectArg_5 = void 0, objectArg_6 = void 0, objectArg_7 = void 0;
|
|
1967
|
+
const binding = new InputBinding(unwrap((objectArg_1 = get$0027.Optional, objectArg_1.Field("prefix", string))), unwrap((objectArg_2 = get$0027.Optional, objectArg_2.Field("position", (value_2) => int(value_2) | 0))), unwrap((objectArg_3 = get$0027.Optional, objectArg_3.Field("itemSeparator", string))), unwrap((objectArg_4 = get$0027.Optional, objectArg_4.Field("separate", bool))), unwrap((objectArg_5 = get$0027.Optional, objectArg_5.Field("loadContents", bool))), unwrap((objectArg_6 = get$0027.Optional, objectArg_6.Field("valueFrom", string))), unwrap((objectArg_7 = get$0027.Optional, objectArg_7.Field("shellQuote", bool))));
|
|
1946
1968
|
Decode_overflowIntoDynamicObj(binding, toList(InputBinding.KnownFieldNames), value);
|
|
1947
1969
|
return binding;
|
|
1948
1970
|
}, value));
|
|
1949
1971
|
}, value_9);
|
|
1950
1972
|
function Decode_decodeNamedInput(name, value) {
|
|
1951
|
-
let v;
|
|
1973
|
+
let v = void 0;
|
|
1952
1974
|
const inputBinding = Decode_inputBindingDecoder(value);
|
|
1953
1975
|
const patternInput = value.tag === /* Object */
|
|
1954
1976
|
3 ? !isEmpty(value.fields[0]) ? head(value.fields[0]).tag === /* Value */
|
|
@@ -1975,7 +1997,7 @@ function Decode_decodeInputSequenceItem(warnings, path, index, item) {
|
|
|
1975
1997
|
}
|
|
1976
1998
|
}
|
|
1977
1999
|
function Decode_inputArrayDecoderWithWarnings(warnings, path, value) {
|
|
1978
|
-
let matchResult, items;
|
|
2000
|
+
let matchResult = void 0, items = void 0;
|
|
1979
2001
|
switch (value.tag) {
|
|
1980
2002
|
case /* Object */
|
|
1981
2003
|
3: {
|
|
@@ -2012,7 +2034,7 @@ function Decode_inputArrayDecoderWithWarnings(warnings, path, value) {
|
|
|
2012
2034
|
}
|
|
2013
2035
|
default: {
|
|
2014
2036
|
const dict = object((get$) => get$.Overflow.FieldList(empty()), value);
|
|
2015
|
-
const collection_1 = toArray(delay(() => map$
|
|
2037
|
+
const collection_1 = toArray(delay(() => map$1((key) => Decode_decodeNamedInput(key, getItemFromDict(dict, key)), dict.keys())));
|
|
2016
2038
|
return Array.from(collection_1);
|
|
2017
2039
|
}
|
|
2018
2040
|
}
|
|
@@ -2029,7 +2051,7 @@ const Decode_baseCommandDecoder = (value_2) => object((get$) => {
|
|
|
2029
2051
|
let baseCommandField;
|
|
2030
2052
|
const objectArg = get$.Optional;
|
|
2031
2053
|
baseCommandField = objectArg.Field("baseCommand", (x) => x);
|
|
2032
|
-
let matchResult, v, v_1, s, s_1;
|
|
2054
|
+
let matchResult = void 0, v = void 0, v_1 = void 0, s = void 0, s_1 = void 0;
|
|
2033
2055
|
if (baseCommandField == null) {
|
|
2034
2056
|
matchResult = 4;
|
|
2035
2057
|
} else {
|
|
@@ -2130,7 +2152,7 @@ function Decode_stringFieldDecoder(field) {
|
|
|
2130
2152
|
}, value_1);
|
|
2131
2153
|
}
|
|
2132
2154
|
function Decode_stringOrStringArrayDecoder(value) {
|
|
2133
|
-
let matchResult, v, s;
|
|
2155
|
+
let matchResult = void 0, v = void 0, s = void 0;
|
|
2134
2156
|
switch (value.tag) {
|
|
2135
2157
|
case /* Object */
|
|
2136
2158
|
3: {
|
|
@@ -2190,8 +2212,14 @@ function Decode_stringOrStringArrayDecoder(value) {
|
|
|
2190
2212
|
}
|
|
2191
2213
|
function Decode_sourceArrayFieldDecoder(field) {
|
|
2192
2214
|
return (value_1) => object((get$) => {
|
|
2193
|
-
let
|
|
2194
|
-
|
|
2215
|
+
let option_1;
|
|
2216
|
+
const objectArg = get$.Optional;
|
|
2217
|
+
option_1 = objectArg.Field(field, (x) => x);
|
|
2218
|
+
if (option_1 != null) {
|
|
2219
|
+
return Decode_stringOrStringArrayDecoder(value(option_1));
|
|
2220
|
+
} else {
|
|
2221
|
+
return void 0;
|
|
2222
|
+
}
|
|
2195
2223
|
}, value_1);
|
|
2196
2224
|
}
|
|
2197
2225
|
function Decode_linkMergeFieldDecoder(field) {
|
|
@@ -2205,7 +2233,7 @@ function Decode_linkMergeFieldDecoder(field) {
|
|
|
2205
2233
|
const linkMergeString = value(linkMergeField);
|
|
2206
2234
|
const matchValue = LinkMergeMethod.tryParse(linkMergeString);
|
|
2207
2235
|
if (matchValue == null) {
|
|
2208
|
-
throw
|
|
2236
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid linkMerge value: ", linkMergeString));
|
|
2209
2237
|
} else {
|
|
2210
2238
|
return value(matchValue);
|
|
2211
2239
|
}
|
|
@@ -2223,7 +2251,7 @@ function Decode_pickValueFieldDecoder(field) {
|
|
|
2223
2251
|
const pickValueString = value(pickValueField);
|
|
2224
2252
|
const matchValue = PickValueMethod.tryParse(pickValueString);
|
|
2225
2253
|
if (matchValue == null) {
|
|
2226
|
-
throw
|
|
2254
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid pickValue value: ", pickValueString));
|
|
2227
2255
|
} else {
|
|
2228
2256
|
return value(matchValue);
|
|
2229
2257
|
}
|
|
@@ -2232,8 +2260,14 @@ function Decode_pickValueFieldDecoder(field) {
|
|
|
2232
2260
|
}
|
|
2233
2261
|
function Decode_scatterFieldDecoder(field) {
|
|
2234
2262
|
return (value_1) => object((get$) => {
|
|
2235
|
-
let
|
|
2236
|
-
|
|
2263
|
+
let option_1;
|
|
2264
|
+
const objectArg = get$.Optional;
|
|
2265
|
+
option_1 = objectArg.Field(field, (x) => x);
|
|
2266
|
+
if (option_1 != null) {
|
|
2267
|
+
return Decode_stringOrStringArrayDecoder(value(option_1));
|
|
2268
|
+
} else {
|
|
2269
|
+
return void 0;
|
|
2270
|
+
}
|
|
2237
2271
|
}, value_1);
|
|
2238
2272
|
}
|
|
2239
2273
|
function Decode_scatterMethodFieldDecoder(field) {
|
|
@@ -2247,7 +2281,7 @@ function Decode_scatterMethodFieldDecoder(field) {
|
|
|
2247
2281
|
const scatterMethodString = value(scatterMethodField);
|
|
2248
2282
|
const matchValue = ScatterMethod.tryParse(scatterMethodString);
|
|
2249
2283
|
if (matchValue == null) {
|
|
2250
|
-
throw
|
|
2284
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid scatterMethod value: ", scatterMethodString));
|
|
2251
2285
|
} else {
|
|
2252
2286
|
return value(matchValue);
|
|
2253
2287
|
}
|
|
@@ -2255,10 +2289,16 @@ function Decode_scatterMethodFieldDecoder(field) {
|
|
|
2255
2289
|
}, value_1);
|
|
2256
2290
|
}
|
|
2257
2291
|
function Decode_expressionStringOptionFieldDecoder(field) {
|
|
2258
|
-
return (value) => object((get$) => {
|
|
2259
|
-
let
|
|
2260
|
-
|
|
2261
|
-
|
|
2292
|
+
return (value$1) => object((get$) => {
|
|
2293
|
+
let option_1;
|
|
2294
|
+
const objectArg = get$.Optional;
|
|
2295
|
+
option_1 = objectArg.Field(field, (x) => x);
|
|
2296
|
+
if (option_1 != null) {
|
|
2297
|
+
return Decode_decodeStringOrExpression(value(option_1));
|
|
2298
|
+
} else {
|
|
2299
|
+
return void 0;
|
|
2300
|
+
}
|
|
2301
|
+
}, value$1);
|
|
2262
2302
|
}
|
|
2263
2303
|
function Decode_decodeStepInputFromValue(id, value$1, allowScalarSource) {
|
|
2264
2304
|
const scalarSource = allowScalarSource ? Decode_stringOrStringArrayDecoder(value$1) : void 0;
|
|
@@ -2270,7 +2310,7 @@ function Decode_decodeStepInputFromValue(id, value$1, allowScalarSource) {
|
|
|
2270
2310
|
}
|
|
2271
2311
|
function Decode_decodeStepInputsFromMap(value) {
|
|
2272
2312
|
const dict = object((get$) => get$.Overflow.FieldList(empty()), value);
|
|
2273
|
-
const collection = toArray(delay(() => map$
|
|
2313
|
+
const collection = toArray(delay(() => map$1((key) => Decode_decodeStepInputFromValue(key, getItemFromDict(dict, key), true), dict.keys())));
|
|
2274
2314
|
return Array.from(collection);
|
|
2275
2315
|
}
|
|
2276
2316
|
function Decode_decodeStepInputFromArrayItem(item) {
|
|
@@ -2296,7 +2336,7 @@ function Decode_decodeStepInputsFromArray(items) {
|
|
|
2296
2336
|
return Decode_decodeStepInputsFromArrayWithWarnings(void 0, "in", items);
|
|
2297
2337
|
}
|
|
2298
2338
|
function Decode_inputStepDecoderWithWarnings(warnings, path, value) {
|
|
2299
|
-
let matchResult, items;
|
|
2339
|
+
let matchResult = void 0, items = void 0;
|
|
2300
2340
|
switch (value.tag) {
|
|
2301
2341
|
case /* Object */
|
|
2302
2342
|
3: {
|
|
@@ -2335,7 +2375,7 @@ function Decode_inputStepDecoderWithWarnings(warnings, path, value) {
|
|
|
2335
2375
|
}
|
|
2336
2376
|
const Decode_inputStepDecoder = (value) => Decode_inputStepDecoderWithWarnings(void 0, "in", value);
|
|
2337
2377
|
function Decode_decodeStepOutputItem(value) {
|
|
2338
|
-
let matchResult, v;
|
|
2378
|
+
let matchResult = void 0, v = void 0;
|
|
2339
2379
|
switch (value.tag) {
|
|
2340
2380
|
case /* Object */
|
|
2341
2381
|
3: {
|
|
@@ -2380,7 +2420,7 @@ const Decode_outputStepsDecoder = (value_2) => object((get$) => {
|
|
|
2380
2420
|
let outField;
|
|
2381
2421
|
const objectArg = get$.Required;
|
|
2382
2422
|
outField = objectArg.Field("out", (x) => x);
|
|
2383
|
-
let matchResult, v_1, outputs, value_1;
|
|
2423
|
+
let matchResult = void 0, v_1 = void 0, outputs = void 0, value_1 = void 0;
|
|
2384
2424
|
switch (outField.tag) {
|
|
2385
2425
|
case /* Object */
|
|
2386
2426
|
3: {
|
|
@@ -2453,7 +2493,7 @@ const Decode_outputStepsDecoder = (value_2) => object((get$) => {
|
|
|
2453
2493
|
case 2:
|
|
2454
2494
|
return [];
|
|
2455
2495
|
case 3: {
|
|
2456
|
-
const collection = map
|
|
2496
|
+
const collection = map(Decode_decodeStepOutputItem, outputs);
|
|
2457
2497
|
return Array.from(collection);
|
|
2458
2498
|
}
|
|
2459
2499
|
default:
|
|
@@ -2473,14 +2513,20 @@ const Decode_idDecoder = (value_1) => object((get$) => {
|
|
|
2473
2513
|
return objectArg.Field("id", string);
|
|
2474
2514
|
}, value_1);
|
|
2475
2515
|
const Decode_intentDecoder = (value_1) => object((get$) => {
|
|
2476
|
-
let
|
|
2477
|
-
|
|
2516
|
+
let option_1;
|
|
2517
|
+
const objectArg = get$.Optional;
|
|
2518
|
+
option_1 = objectArg.Field("intent", (x) => x);
|
|
2519
|
+
if (option_1 != null) {
|
|
2520
|
+
return Decode_stringOrStringArrayDecoder(value(option_1));
|
|
2521
|
+
} else {
|
|
2522
|
+
return void 0;
|
|
2523
|
+
}
|
|
2478
2524
|
}, value_1);
|
|
2479
2525
|
function Decode_hasField(fieldName, yamlElement) {
|
|
2480
2526
|
if (yamlElement.tag === /* Object */
|
|
2481
2527
|
3) {
|
|
2482
2528
|
return exists((_arg) => {
|
|
2483
|
-
let matchResult, k_1;
|
|
2529
|
+
let matchResult = void 0, k_1 = void 0;
|
|
2484
2530
|
if (_arg.tag === /* Mapping */
|
|
2485
2531
|
0) {
|
|
2486
2532
|
if (_arg.fields[0].Value === fieldName) {
|
|
@@ -2504,22 +2550,21 @@ function Decode_hasField(fieldName, yamlElement) {
|
|
|
2504
2550
|
}
|
|
2505
2551
|
}
|
|
2506
2552
|
function Decode_withDefaultCwlVersion(defaultCwlVersion, yamlElement) {
|
|
2507
|
-
let fields;
|
|
2508
2553
|
if (yamlElement.tag === /* Object */
|
|
2509
2554
|
3) {
|
|
2510
|
-
if (
|
|
2555
|
+
if (yamlElement.fields[0], Decode_hasField("cwlVersion", yamlElement)) {
|
|
2511
2556
|
const fields_1 = yamlElement.fields[0];
|
|
2512
2557
|
return yamlElement;
|
|
2513
2558
|
} else {
|
|
2514
2559
|
const fields_2 = yamlElement.fields[0];
|
|
2515
|
-
return YAMLElement_Object(cons(YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("cwlVersion"), YAMLElement_Object(singleton(YAMLElement_Value(YAMLContent_create_Z1C3A29C9(defaultCwlVersion))))), fields_2));
|
|
2560
|
+
return YAMLElement_Object$(cons(YAMLElement_Mapping(YAMLContent_create_Z1C3A29C9("cwlVersion"), YAMLElement_Object$(singleton(YAMLElement_Value(YAMLContent_create_Z1C3A29C9(defaultCwlVersion))))), fields_2));
|
|
2516
2561
|
}
|
|
2517
2562
|
} else {
|
|
2518
2563
|
return yamlElement;
|
|
2519
2564
|
}
|
|
2520
2565
|
}
|
|
2521
2566
|
function Decode_workflowStepRunDecoder(warnings, defaultCwlVersion, runValue) {
|
|
2522
|
-
let matchResult, v;
|
|
2567
|
+
let matchResult = void 0, v = void 0;
|
|
2523
2568
|
switch (runValue.tag) {
|
|
2524
2569
|
case /* Object */
|
|
2525
2570
|
3: {
|
|
@@ -2569,7 +2614,7 @@ function Decode_workflowStepRunDecoder(warnings, defaultCwlVersion, runValue) {
|
|
|
2569
2614
|
}
|
|
2570
2615
|
}
|
|
2571
2616
|
default:
|
|
2572
|
-
throw
|
|
2617
|
+
throw ArgumentException_$ctor_Z721C83C5(`Unsupported run value for workflow step: ${interpolate("%A%P()", [runValue])}`);
|
|
2573
2618
|
}
|
|
2574
2619
|
}
|
|
2575
2620
|
function Decode_decodeWorkflowStepFromValueWithId(warnings, defaultCwlVersion, path, stepId, value) {
|
|
@@ -2579,7 +2624,7 @@ function Decode_decodeWorkflowStepFromValueWithId(warnings, defaultCwlVersion, p
|
|
|
2579
2624
|
}, value));
|
|
2580
2625
|
const inputs = object((get$0027_1) => {
|
|
2581
2626
|
let arg_3;
|
|
2582
|
-
const path_1 =
|
|
2627
|
+
const path_1 = concat(path, ".in");
|
|
2583
2628
|
arg_3 = (value_1) => Decode_inputStepDecoderWithWarnings(warnings, path_1, value_1);
|
|
2584
2629
|
const objectArg_1 = get$0027_1.Required;
|
|
2585
2630
|
return objectArg_1.Field("in", arg_3);
|
|
@@ -2615,7 +2660,7 @@ function Decode_decodeWorkflowStepFromArrayItemWithWarnings(warnings, defaultCwl
|
|
|
2615
2660
|
}
|
|
2616
2661
|
}
|
|
2617
2662
|
function Decode_stepArrayDecoderWithVersion(warnings, defaultCwlVersion, value) {
|
|
2618
|
-
let matchResult, items;
|
|
2663
|
+
let matchResult = void 0, items = void 0;
|
|
2619
2664
|
switch (value.tag) {
|
|
2620
2665
|
case /* Object */
|
|
2621
2666
|
3: {
|
|
@@ -2652,7 +2697,7 @@ function Decode_stepArrayDecoderWithVersion(warnings, defaultCwlVersion, value)
|
|
|
2652
2697
|
}
|
|
2653
2698
|
default: {
|
|
2654
2699
|
const dict = object((get$) => get$.Overflow.FieldList(empty()), value);
|
|
2655
|
-
const collection_1 = toArray(delay(() => map$
|
|
2700
|
+
const collection_1 = toArray(delay(() => map$1((key) => Decode_decodeWorkflowStepFromValueWithId(warnings, defaultCwlVersion, concat("steps.", key), key, getItemFromDict(dict, key)), dict.keys())));
|
|
2656
2701
|
return Array.from(collection_1);
|
|
2657
2702
|
}
|
|
2658
2703
|
}
|
|
@@ -2750,7 +2795,7 @@ function Decode_operationDecoder(warnings, yamlCWL) {
|
|
|
2750
2795
|
let inputs;
|
|
2751
2796
|
const matchValue = Decode_inputsDecoderWithWarnings(warnings)(yamlCWL);
|
|
2752
2797
|
if (matchValue == null) {
|
|
2753
|
-
throw
|
|
2798
|
+
throw InvalidOperationException_$ctor_Z721C83C5("Inputs are required for an operation");
|
|
2754
2799
|
} else {
|
|
2755
2800
|
inputs = value(matchValue);
|
|
2756
2801
|
}
|
|
@@ -2790,7 +2835,7 @@ function Decode_workflowDecoder(warnings, yamlCWL) {
|
|
|
2790
2835
|
let inputs;
|
|
2791
2836
|
const matchValue = Decode_inputsDecoderWithWarnings(warnings)(yamlCWL);
|
|
2792
2837
|
if (matchValue == null) {
|
|
2793
|
-
throw
|
|
2838
|
+
throw InvalidOperationException_$ctor_Z721C83C5("Inputs are required for a workflow");
|
|
2794
2839
|
} else {
|
|
2795
2840
|
inputs = value(matchValue);
|
|
2796
2841
|
}
|
|
@@ -2837,7 +2882,7 @@ function Decode_decodeCWLProcessingUnitElementWithWarnings(warnings, yamlCWL) {
|
|
|
2837
2882
|
case "Operation":
|
|
2838
2883
|
return CWLProcessingUnit_Operation(Decode_operationDecoder(warnings, yamlCWL));
|
|
2839
2884
|
default:
|
|
2840
|
-
throw
|
|
2885
|
+
throw ArgumentException_$ctor_Z721C83C5(concat("Invalid or unsupported CWL class: ", cls));
|
|
2841
2886
|
}
|
|
2842
2887
|
}
|
|
2843
2888
|
function Decode_decodeCWLProcessingUnitElement(yamlCWL) {
|
|
@@ -2880,176 +2925,271 @@ function Decode_decodeCWLProcessingUnitWithWarnings(cwl) {
|
|
|
2880
2925
|
function Decode_decodeCWLProcessingUnit(cwl) {
|
|
2881
2926
|
return Decode_decodeCWLProcessingUnitWithWarnings(cwl).Value;
|
|
2882
2927
|
}
|
|
2883
|
-
function
|
|
2884
|
-
|
|
2885
|
-
|
|
2886
|
-
|
|
2887
|
-
|
|
2888
|
-
|
|
2889
|
-
|
|
2890
|
-
|
|
2891
|
-
|
|
2892
|
-
|
|
2928
|
+
function DecodeParameters_tryField(fieldName, yEle) {
|
|
2929
|
+
if (yEle.tag === /* Object */
|
|
2930
|
+
3) {
|
|
2931
|
+
return tryPick((_arg) => {
|
|
2932
|
+
let matchResult = void 0, key_1 = void 0, value_1 = void 0;
|
|
2933
|
+
if (_arg.tag === /* Mapping */
|
|
2934
|
+
0) {
|
|
2935
|
+
if (_arg.fields[1], _arg.fields[0].Value === fieldName) {
|
|
2936
|
+
matchResult = 0;
|
|
2937
|
+
key_1 = _arg.fields[0];
|
|
2938
|
+
value_1 = _arg.fields[1];
|
|
2939
|
+
} else {
|
|
2940
|
+
matchResult = 1;
|
|
2941
|
+
}
|
|
2942
|
+
} else {
|
|
2943
|
+
matchResult = 1;
|
|
2893
2944
|
}
|
|
2894
|
-
|
|
2895
|
-
|
|
2896
|
-
|
|
2897
|
-
|
|
2898
|
-
|
|
2899
|
-
|
|
2900
|
-
|
|
2901
|
-
|
|
2902
|
-
|
|
2903
|
-
|
|
2904
|
-
|
|
2945
|
+
switch (matchResult) {
|
|
2946
|
+
case 0:
|
|
2947
|
+
return value_1;
|
|
2948
|
+
default:
|
|
2949
|
+
return void 0;
|
|
2950
|
+
}
|
|
2951
|
+
}, yEle.fields[0]);
|
|
2952
|
+
} else {
|
|
2953
|
+
return void 0;
|
|
2954
|
+
}
|
|
2955
|
+
}
|
|
2956
|
+
function DecodeParameters_tryScalarString(yEle) {
|
|
2957
|
+
let matchResult = void 0, value = void 0;
|
|
2958
|
+
switch (yEle.tag) {
|
|
2959
|
+
case /* Value */
|
|
2960
|
+
1: {
|
|
2961
|
+
matchResult = 0;
|
|
2962
|
+
value = yEle.fields[0];
|
|
2963
|
+
break;
|
|
2964
|
+
}
|
|
2965
|
+
case /* Object */
|
|
2966
|
+
3: {
|
|
2967
|
+
if (!isEmpty(yEle.fields[0])) {
|
|
2968
|
+
if (head(yEle.fields[0]).tag === /* Value */
|
|
2969
|
+
1) {
|
|
2970
|
+
if (isEmpty(tail(yEle.fields[0]))) {
|
|
2971
|
+
matchResult = 0;
|
|
2972
|
+
value = head(yEle.fields[0]).fields[0];
|
|
2905
2973
|
} else {
|
|
2906
2974
|
matchResult = 1;
|
|
2907
2975
|
}
|
|
2908
2976
|
} else {
|
|
2909
2977
|
matchResult = 1;
|
|
2910
2978
|
}
|
|
2911
|
-
break;
|
|
2912
|
-
}
|
|
2913
|
-
default:
|
|
2914
|
-
matchResult = 1;
|
|
2915
|
-
}
|
|
2916
|
-
switch (matchResult) {
|
|
2917
|
-
case 0:
|
|
2918
|
-
return v.Value;
|
|
2919
|
-
default:
|
|
2920
|
-
return void 0;
|
|
2921
|
-
}
|
|
2922
|
-
};
|
|
2923
|
-
const tryField = (fieldName, value) => {
|
|
2924
|
-
try {
|
|
2925
|
-
return object((get$_1) => {
|
|
2926
|
-
const objectArg = get$_1.Optional;
|
|
2927
|
-
return objectArg.Field(fieldName, (x) => x);
|
|
2928
|
-
}, value);
|
|
2929
|
-
} catch (matchValue) {
|
|
2930
|
-
if (Decode_isRecoverableDecodingError(matchValue)) {
|
|
2931
|
-
return void 0;
|
|
2932
2979
|
} else {
|
|
2933
|
-
|
|
2980
|
+
matchResult = 1;
|
|
2934
2981
|
}
|
|
2982
|
+
break;
|
|
2935
2983
|
}
|
|
2936
|
-
|
|
2937
|
-
|
|
2938
|
-
|
|
2939
|
-
|
|
2940
|
-
|
|
2941
|
-
|
|
2942
|
-
|
|
2943
|
-
|
|
2944
|
-
|
|
2984
|
+
default:
|
|
2985
|
+
matchResult = 1;
|
|
2986
|
+
}
|
|
2987
|
+
switch (matchResult) {
|
|
2988
|
+
case 0:
|
|
2989
|
+
return value.Value;
|
|
2990
|
+
default:
|
|
2991
|
+
return void 0;
|
|
2992
|
+
}
|
|
2993
|
+
}
|
|
2994
|
+
function DecodeParameters_decodeFileInstance(yEle) {
|
|
2995
|
+
return Decode_decodeFileInstanceFields(yEle);
|
|
2996
|
+
}
|
|
2997
|
+
function DecodeParameters_decodeDirectoryInstance(yEle) {
|
|
2998
|
+
return Decode_decodeDirectoryInstanceFields(yEle);
|
|
2999
|
+
}
|
|
3000
|
+
function DecodeParameters_decodeParameterValue(value$1) {
|
|
3001
|
+
let collection = void 0, collection_1 = void 0, collection_2 = void 0;
|
|
3002
|
+
let matchResult = void 0, scalar = void 0, items_1 = void 0, items_2 = void 0, trailingMappings_1 = void 0, fields = void 0, other_1 = void 0;
|
|
3003
|
+
switch (value$1.tag) {
|
|
2945
3004
|
case /* Value */
|
|
2946
3005
|
1: {
|
|
2947
|
-
|
|
2948
|
-
|
|
3006
|
+
matchResult = 0;
|
|
3007
|
+
scalar = value$1.fields[0];
|
|
2949
3008
|
break;
|
|
2950
3009
|
}
|
|
2951
3010
|
case /* Object */
|
|
2952
3011
|
3: {
|
|
2953
|
-
if (!isEmpty(
|
|
2954
|
-
switch (head(
|
|
3012
|
+
if (!isEmpty(value$1.fields[0])) {
|
|
3013
|
+
switch (head(value$1.fields[0]).tag) {
|
|
2955
3014
|
case /* Value */
|
|
2956
3015
|
1: {
|
|
2957
|
-
if (isEmpty(tail(
|
|
2958
|
-
|
|
2959
|
-
|
|
3016
|
+
if (isEmpty(tail(value$1.fields[0]))) {
|
|
3017
|
+
matchResult = 0;
|
|
3018
|
+
scalar = head(value$1.fields[0]).fields[0];
|
|
2960
3019
|
} else {
|
|
2961
|
-
|
|
3020
|
+
matchResult = 3;
|
|
3021
|
+
fields = value$1.fields[0];
|
|
2962
3022
|
}
|
|
2963
3023
|
break;
|
|
2964
3024
|
}
|
|
2965
3025
|
case /* Sequence */
|
|
2966
3026
|
2: {
|
|
2967
|
-
if (isEmpty(tail(
|
|
2968
|
-
|
|
2969
|
-
|
|
3027
|
+
if (isEmpty(tail(value$1.fields[0]))) {
|
|
3028
|
+
matchResult = 1;
|
|
3029
|
+
items_1 = head(value$1.fields[0]).fields[0];
|
|
3030
|
+
} else if (head(value$1.fields[0]).fields[0], exists((_arg) => {
|
|
3031
|
+
if (_arg.tag === /* Mapping */
|
|
3032
|
+
0) {
|
|
3033
|
+
return true;
|
|
3034
|
+
} else {
|
|
3035
|
+
return false;
|
|
3036
|
+
}
|
|
3037
|
+
}, tail(value$1.fields[0]))) {
|
|
3038
|
+
matchResult = 2;
|
|
3039
|
+
items_2 = head(value$1.fields[0]).fields[0];
|
|
3040
|
+
trailingMappings_1 = tail(value$1.fields[0]);
|
|
2970
3041
|
} else {
|
|
2971
|
-
|
|
3042
|
+
matchResult = 3;
|
|
3043
|
+
fields = value$1.fields[0];
|
|
2972
3044
|
}
|
|
2973
3045
|
break;
|
|
2974
3046
|
}
|
|
2975
|
-
default:
|
|
2976
|
-
|
|
3047
|
+
default: {
|
|
3048
|
+
matchResult = 3;
|
|
3049
|
+
fields = value$1.fields[0];
|
|
3050
|
+
}
|
|
2977
3051
|
}
|
|
2978
3052
|
} else {
|
|
2979
|
-
|
|
3053
|
+
matchResult = 3;
|
|
3054
|
+
fields = value$1.fields[0];
|
|
2980
3055
|
}
|
|
2981
3056
|
break;
|
|
2982
3057
|
}
|
|
2983
3058
|
case /* Sequence */
|
|
2984
3059
|
2: {
|
|
2985
|
-
|
|
2986
|
-
|
|
3060
|
+
matchResult = 1;
|
|
3061
|
+
items_1 = value$1.fields[0];
|
|
2987
3062
|
break;
|
|
2988
3063
|
}
|
|
2989
|
-
default:
|
|
2990
|
-
|
|
3064
|
+
default: {
|
|
3065
|
+
matchResult = 4;
|
|
3066
|
+
other_1 = value$1;
|
|
3067
|
+
}
|
|
2991
3068
|
}
|
|
2992
|
-
switch (
|
|
2993
|
-
case 0:
|
|
2994
|
-
|
|
2995
|
-
|
|
2996
|
-
|
|
2997
|
-
|
|
2998
|
-
|
|
2999
|
-
|
|
3000
|
-
|
|
3001
|
-
|
|
3002
|
-
|
|
3003
|
-
|
|
3004
|
-
|
|
3005
|
-
|
|
3006
|
-
|
|
3069
|
+
switch (matchResult) {
|
|
3070
|
+
case 0: {
|
|
3071
|
+
const matchValue = scalar.Value;
|
|
3072
|
+
switch (matchValue) {
|
|
3073
|
+
case "null":
|
|
3074
|
+
return CWLParameterValue.Null;
|
|
3075
|
+
case "true":
|
|
3076
|
+
return CWLParameterValue_Boolean$(true);
|
|
3077
|
+
case "false":
|
|
3078
|
+
return CWLParameterValue_Boolean$(false);
|
|
3079
|
+
default: {
|
|
3080
|
+
const text = matchValue;
|
|
3081
|
+
let matchValue_1;
|
|
3082
|
+
let outArg = 0n;
|
|
3083
|
+
matchValue_1 = [tryParse$1(text, 7, false, 64, new FSharpRef(() => outArg, (v) => {
|
|
3084
|
+
outArg = v;
|
|
3085
|
+
})), outArg];
|
|
3086
|
+
if (matchValue_1[0]) {
|
|
3087
|
+
return CWLParameterValue_Int(matchValue_1[1]);
|
|
3007
3088
|
} else {
|
|
3008
|
-
|
|
3089
|
+
let matchValue_2;
|
|
3090
|
+
let outArg_1 = 0;
|
|
3091
|
+
matchValue_2 = [tryParse$2(text, new FSharpRef(() => outArg_1, (v_1) => {
|
|
3092
|
+
outArg_1 = v_1;
|
|
3093
|
+
})), outArg_1];
|
|
3094
|
+
if (matchValue_2[0]) {
|
|
3095
|
+
return CWLParameterValue_Float(matchValue_2[1]);
|
|
3096
|
+
} else {
|
|
3097
|
+
return CWLParameterValue_String$(text);
|
|
3098
|
+
}
|
|
3009
3099
|
}
|
|
3010
|
-
} else {
|
|
3011
|
-
matchResult_2 = 1;
|
|
3012
|
-
}
|
|
3013
|
-
switch (matchResult_2) {
|
|
3014
|
-
case 0:
|
|
3015
|
-
return new CWLParameterReference(key, (collection = choose(pathValue, items), Array.from(collection)), CWLType_Array(new InputArraySchema(className_3 === "Directory" ? CWLType_Directory(new DirectoryInstance()) : CWLType_File(new FileInstance()))));
|
|
3016
|
-
default:
|
|
3017
|
-
return new CWLParameterReference(key, (collection_1 = choose(tryScalarString, items), Array.from(collection_1)));
|
|
3018
3100
|
}
|
|
3019
3101
|
}
|
|
3020
3102
|
}
|
|
3021
|
-
case
|
|
3022
|
-
|
|
3023
|
-
|
|
3024
|
-
|
|
3025
|
-
|
|
3026
|
-
|
|
3027
|
-
return
|
|
3103
|
+
case 1:
|
|
3104
|
+
return CWLParameterValue_Array$((collection = map(DecodeParameters_decodeParameterValue, filter((arg) => !Decode_isIgnorableYamlNoise(arg), items_1)), Array.from(collection)));
|
|
3105
|
+
case 2:
|
|
3106
|
+
return CWLParameterValue_Array$((collection_1 = map(DecodeParameters_decodeParameterValue, map((item) => {
|
|
3107
|
+
if (item.tag === /* Object */
|
|
3108
|
+
3) {
|
|
3109
|
+
return YAMLElement_Object$(append(item.fields[0], trailingMappings_1));
|
|
3028
3110
|
} else {
|
|
3029
|
-
|
|
3030
|
-
|
|
3031
|
-
|
|
3032
|
-
|
|
3033
|
-
|
|
3111
|
+
return YAMLElement_Object$(cons(item, trailingMappings_1));
|
|
3112
|
+
}
|
|
3113
|
+
}, items_2)), Array.from(collection_1)));
|
|
3114
|
+
case 3: {
|
|
3115
|
+
let matchValue_3;
|
|
3116
|
+
const option_1 = DecodeParameters_tryField("class", value$1);
|
|
3117
|
+
matchValue_3 = option_1 != null ? DecodeParameters_tryScalarString(value(option_1)) : void 0;
|
|
3118
|
+
let matchResult_1 = void 0;
|
|
3119
|
+
if (matchValue_3 != null) {
|
|
3120
|
+
switch (value(matchValue_3)) {
|
|
3121
|
+
case "File": {
|
|
3122
|
+
matchResult_1 = 0;
|
|
3123
|
+
break;
|
|
3124
|
+
}
|
|
3125
|
+
case "Directory": {
|
|
3126
|
+
matchResult_1 = 1;
|
|
3127
|
+
break;
|
|
3128
|
+
}
|
|
3129
|
+
default:
|
|
3130
|
+
matchResult_1 = 2;
|
|
3034
3131
|
}
|
|
3035
3132
|
} else {
|
|
3036
|
-
|
|
3037
|
-
|
|
3038
|
-
|
|
3039
|
-
|
|
3133
|
+
matchResult_1 = 2;
|
|
3134
|
+
}
|
|
3135
|
+
switch (matchResult_1) {
|
|
3136
|
+
case 0:
|
|
3137
|
+
return CWLParameterValue_File(DecodeParameters_decodeFileInstance(value$1));
|
|
3138
|
+
case 1:
|
|
3139
|
+
return CWLParameterValue_Directory(DecodeParameters_decodeDirectoryInstance(value$1));
|
|
3140
|
+
default:
|
|
3141
|
+
return CWLParameterValue_Record((collection_2 = choose((_arg_1) => {
|
|
3142
|
+
if (_arg_1.tag === /* Mapping */
|
|
3143
|
+
0) {
|
|
3144
|
+
return new CWLParameterRecordField(_arg_1.fields[0].Value, DecodeParameters_decodeParameterValue(_arg_1.fields[1]));
|
|
3145
|
+
} else {
|
|
3146
|
+
return void 0;
|
|
3147
|
+
}
|
|
3148
|
+
}, fields), Array.from(collection_2)));
|
|
3040
3149
|
}
|
|
3041
3150
|
}
|
|
3042
3151
|
default:
|
|
3043
|
-
|
|
3152
|
+
return CWLParameterValue_String$(toText(printf("%A"))(other_1));
|
|
3153
|
+
}
|
|
3154
|
+
}
|
|
3155
|
+
function DecodeParameters_cwlParameterReferenceDecoder(get$, key, yEle) {
|
|
3156
|
+
let matchValue_4 = void 0;
|
|
3157
|
+
const makeReference = (value, explicitType) => {
|
|
3158
|
+
let option_1 = void 0;
|
|
3159
|
+
return new CWLParameterReference(key, void 0, value, unwrap((option_1 = explicitType, option_1 != null ? option_1 : CWLParameterValueModule_tryInferType(value))));
|
|
3160
|
+
};
|
|
3161
|
+
const withOverflow = (reference) => {
|
|
3162
|
+
Decode_overflowIntoDynamicObj(reference, toList(CWLParameterReference.KnownFieldNames), yEle);
|
|
3163
|
+
return reference;
|
|
3164
|
+
};
|
|
3165
|
+
const matchValue = DecodeParameters_tryField("type", yEle);
|
|
3166
|
+
const matchValue_1 = DecodeParameters_tryField("value", yEle);
|
|
3167
|
+
if (matchValue == null) {
|
|
3168
|
+
if (matchValue_1 != null) {
|
|
3169
|
+
const valueElement_1 = value(matchValue_1);
|
|
3170
|
+
return withOverflow(makeReference(DecodeParameters_decodeParameterValue(valueElement_1), void 0));
|
|
3171
|
+
} else {
|
|
3172
|
+
return withOverflow(makeReference(DecodeParameters_decodeParameterValue(yEle), void 0));
|
|
3173
|
+
}
|
|
3174
|
+
} else if (matchValue_1 == null) {
|
|
3175
|
+
const typeElement_1 = value(matchValue);
|
|
3176
|
+
return withOverflow(makeReference(CWLParameterValue.Null, (matchValue_4 = DecodeParameters_tryScalarString(typeElement_1), matchValue_4 == null ? Decode_cwlTypeDecoder$0027(typeElement_1) : Decode_cwlTypeStringMatcher(value(matchValue_4), get$)[0])));
|
|
3177
|
+
} else {
|
|
3178
|
+
const typeElement = value(matchValue);
|
|
3179
|
+
const valueElement = value(matchValue_1);
|
|
3180
|
+
let type__1;
|
|
3181
|
+
const matchValue_3 = DecodeParameters_tryScalarString(typeElement);
|
|
3182
|
+
type__1 = matchValue_3 == null ? Decode_cwlTypeDecoder$0027(typeElement) : Decode_cwlTypeStringMatcher(value(matchValue_3), get$)[0];
|
|
3183
|
+
return withOverflow(makeReference(DecodeParameters_decodeParameterValue(valueElement), type__1));
|
|
3044
3184
|
}
|
|
3045
3185
|
}
|
|
3046
3186
|
const DecodeParameters_cwlparameterReferenceArrayDecoder = (value) => object((get$) => {
|
|
3047
3187
|
const dict = get$.Overflow.FieldList(empty());
|
|
3048
|
-
const collection = toArray(delay(() => map$
|
|
3188
|
+
const collection = toArray(delay(() => map$1((ele) => DecodeParameters_cwlParameterReferenceDecoder(get$, ele[0], ele[1]), dict)));
|
|
3049
3189
|
return Array.from(collection);
|
|
3050
3190
|
}, value);
|
|
3051
3191
|
function DecodeParameters_decodeYAMLParameterFile(yaml) {
|
|
3052
3192
|
return DecodeParameters_cwlparameterReferenceArrayDecoder(read(yaml));
|
|
3053
3193
|
}
|
|
3054
3194
|
|
|
3055
|
-
export { DecodeParameters_cwlParameterReferenceDecoder, DecodeParameters_cwlparameterReferenceArrayDecoder, DecodeParameters_decodeYAMLParameterFile, Decode_DecodeResult$1, Decode_DecodeResult$1_$reflection, Decode_DecodeWarning, Decode_DecodeWarning_$reflection, Decode_addRequirementPayloadOverflow, Decode_addWarning, Decode_baseCommandDecoder, Decode_boolOptionFieldDecoder, Decode_boxOverflowInt64, Decode_classDecoder, Decode_commandLineToolDecoder, Decode_cwlSimpleTypeFromString, Decode_cwlTypeDecoder, Decode_cwlTypeDecoder$0027, Decode_cwlTypeStringMatcher, Decode_decodeCWLProcessingUnit, Decode_decodeCWLProcessingUnitElement, Decode_decodeCWLProcessingUnitElementWithWarnings, Decode_decodeCWLProcessingUnitWithWarnings, Decode_decodeCommandLineTool, Decode_decodeCommandLineToolWithWarnings, Decode_decodeDirectoryInstanceFields, Decode_decodeExpressionTool, Decode_decodeExpressionToolWithWarnings, Decode_decodeFileInstanceFields, Decode_decodeHintElement, Decode_decodeInputSequenceItem, Decode_decodeNamedInput, Decode_decodeNamedOutput, Decode_decodeOperation, Decode_decodeOperationWithWarnings, Decode_decodeOutputSequenceItem, Decode_decodeResourceScalar, Decode_decodeSchemaSaladString, Decode_decodeStepInputFromArrayItem, Decode_decodeStepInputFromValue, Decode_decodeStepInputsFromArray, Decode_decodeStepInputsFromArrayWithWarnings, Decode_decodeStepInputsFromMap, Decode_decodeStepOutputItem, Decode_decodeStringArrayOrScalar, Decode_decodeStringOrExpression, Decode_decodeWorkflow, Decode_decodeWorkflowStepFromArrayItem, Decode_decodeWorkflowStepFromArrayItemWithWarnings, Decode_decodeWorkflowStepFromValueWithId, Decode_decodeWorkflowWithWarnings, Decode_direntDecoder, Decode_docDecoder, Decode_dockerRequirementDecoder, Decode_envVarRequirementDecoder, Decode_expressionStringOptionFieldDecoder, Decode_expressionToolDecoder, Decode_hasField, Decode_hintArrayDecoder, Decode_hintsDecoder, Decode_idDecoder, Decode_initialWorkDirEntryDecoder, Decode_initialWorkDirRequirementDecoder, Decode_inlineJavascriptRequirementDecoder, Decode_inplaceUpdateRequirementDecoder, Decode_inputArrayDecoder, Decode_inputArrayDecoderWithWarnings, Decode_inputArraySchemaDecoder, Decode_inputBindingDecoder, Decode_inputEnumSchemaDecoder, Decode_inputRecordFieldDecoder, Decode_inputRecordSchemaDecoder, Decode_inputStepDecoder, Decode_inputStepDecoderWithWarnings, Decode_inputsDecoder, Decode_inputsDecoderWithWarnings, Decode_intentDecoder, Decode_isIgnorableYamlNoise, Decode_isRecoverableDecodingError, Decode_labelDecoder, Decode_linkMergeFieldDecoder, Decode_loadListingRequirementDecoder, Decode_networkAccessRequirementDecoder, Decode_operationDecoder, Decode_optionalResourceField, Decode_outputArrayDecoder, Decode_outputArrayDecoderWithWarnings, Decode_outputBindingDecoder, Decode_outputBindingGlobDecoder, Decode_outputSourceDecoder, Decode_outputStepsDecoder, Decode_outputsDecoder, Decode_outputsDecoderWithWarnings, Decode_overflowDecoder, Decode_overflowIntoDynamicObj, Decode_parseArrayShorthand, Decode_pickValueFieldDecoder, Decode_readSanitizedYaml, Decode_removeYamlComments, Decode_requirementArrayDecoder, Decode_requirementFromTypeName, Decode_requirementsDecoder, Decode_resourceRequirementDecoder, Decode_scatterFieldDecoder, Decode_scatterMethodFieldDecoder, Decode_schemaDefRequirementDecoder, Decode_schemaDefRequirementTypeDecoder, Decode_softwareRequirementDecoder, Decode_sourceArrayFieldDecoder, Decode_stepArrayDecoder, Decode_stepArrayDecoderWithVersion, Decode_stepsDecoder, Decode_stepsDecoderWithVersion, Decode_stringFieldDecoder, Decode_stringOptionFieldDecoder, Decode_stringOrStringArrayDecoder, Decode_toolTimeLimitRequirementDecoder, Decode_tryDecodeBoolScalar, Decode_tryDecodeFieldsAsArray, Decode_tryDecodeFieldsAsMap, Decode_tryDecodeKnownRequirementFromElement, Decode_tryGetBoolField, Decode_tryGetInt64Field, Decode_tryGetIntArrayField, Decode_tryGetLoadListingField, Decode_tryGetPresentField, Decode_tryGetStringField, Decode_tryGetYamlField, Decode_versionDecoder, Decode_withDefaultCwlVersion, Decode_workReuseRequirementDecoder, Decode_workflowDecoder, Decode_workflowStepRunDecoder, Decode_yamlElementOptionFieldDecoder, ResizeArray_map };
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export { DecodeParameters_cwlParameterReferenceDecoder, DecodeParameters_cwlparameterReferenceArrayDecoder, DecodeParameters_decodeParameterValue, DecodeParameters_decodeYAMLParameterFile, Decode_DecodeResult$1, Decode_DecodeResult$1_$reflection, Decode_DecodeWarning, Decode_DecodeWarning_$reflection, Decode_addRequirementPayloadOverflow, Decode_addWarning, Decode_baseCommandDecoder, Decode_boolOptionFieldDecoder, Decode_boxOverflowInt64, Decode_classDecoder, Decode_commandLineToolDecoder, Decode_cwlSimpleTypeFromString, Decode_cwlTypeDecoder, Decode_cwlTypeDecoder$0027, Decode_cwlTypeStringMatcher, Decode_decodeCWLProcessingUnit, Decode_decodeCWLProcessingUnitElement, Decode_decodeCWLProcessingUnitElementWithWarnings, Decode_decodeCWLProcessingUnitWithWarnings, Decode_decodeCommandLineTool, Decode_decodeCommandLineToolWithWarnings, Decode_decodeDirectoryInstanceFields, Decode_decodeExpressionTool, Decode_decodeExpressionToolWithWarnings, Decode_decodeFileInstanceFields, Decode_decodeHintElement, Decode_decodeInputSequenceItem, Decode_decodeNamedInput, Decode_decodeNamedOutput, Decode_decodeOperation, Decode_decodeOperationWithWarnings, Decode_decodeOutputSequenceItem, Decode_decodeResourceScalar, Decode_decodeSchemaSaladString, Decode_decodeStepInputFromArrayItem, Decode_decodeStepInputFromValue, Decode_decodeStepInputsFromArray, Decode_decodeStepInputsFromArrayWithWarnings, Decode_decodeStepInputsFromMap, Decode_decodeStepOutputItem, Decode_decodeStringArrayOrScalar, Decode_decodeStringOrExpression, Decode_decodeWorkflow, Decode_decodeWorkflowStepFromArrayItem, Decode_decodeWorkflowStepFromArrayItemWithWarnings, Decode_decodeWorkflowStepFromValueWithId, Decode_decodeWorkflowWithWarnings, Decode_direntDecoder, Decode_docDecoder, Decode_dockerRequirementDecoder, Decode_envVarRequirementDecoder, Decode_expressionStringOptionFieldDecoder, Decode_expressionToolDecoder, Decode_hasField, Decode_hintArrayDecoder, Decode_hintsDecoder, Decode_idDecoder, Decode_initialWorkDirEntryDecoder, Decode_initialWorkDirRequirementDecoder, Decode_inlineJavascriptRequirementDecoder, Decode_inplaceUpdateRequirementDecoder, Decode_inputArrayDecoder, Decode_inputArrayDecoderWithWarnings, Decode_inputArraySchemaDecoder, Decode_inputBindingDecoder, Decode_inputEnumSchemaDecoder, Decode_inputRecordFieldDecoder, Decode_inputRecordSchemaDecoder, Decode_inputStepDecoder, Decode_inputStepDecoderWithWarnings, Decode_inputsDecoder, Decode_inputsDecoderWithWarnings, Decode_intentDecoder, Decode_isIgnorableYamlNoise, Decode_isRecoverableDecodingError, Decode_labelDecoder, Decode_linkMergeFieldDecoder, Decode_loadListingRequirementDecoder, Decode_networkAccessRequirementDecoder, Decode_operationDecoder, Decode_optionalResourceField, Decode_outputArrayDecoder, Decode_outputArrayDecoderWithWarnings, Decode_outputBindingDecoder, Decode_outputBindingGlobDecoder, Decode_outputSourceDecoder, Decode_outputStepsDecoder, Decode_outputsDecoder, Decode_outputsDecoderWithWarnings, Decode_overflowDecoder, Decode_overflowIntoDynamicObj, Decode_parseArrayShorthand, Decode_pickValueFieldDecoder, Decode_readSanitizedYaml, Decode_removeYamlComments, Decode_requirementArrayDecoder, Decode_requirementFromTypeName, Decode_requirementsDecoder, Decode_resourceRequirementDecoder, Decode_scatterFieldDecoder, Decode_scatterMethodFieldDecoder, Decode_schemaDefRequirementDecoder, Decode_schemaDefRequirementTypeDecoder, Decode_softwareRequirementDecoder, Decode_sourceArrayFieldDecoder, Decode_stepArrayDecoder, Decode_stepArrayDecoderWithVersion, Decode_stepsDecoder, Decode_stepsDecoderWithVersion, Decode_stringFieldDecoder, Decode_stringOptionFieldDecoder, Decode_stringOrStringArrayDecoder, Decode_toolTimeLimitRequirementDecoder, Decode_tryDecodeBoolScalar, Decode_tryDecodeFieldsAsArray, Decode_tryDecodeFieldsAsMap, Decode_tryDecodeKnownRequirementFromElement, Decode_tryGetBoolField, Decode_tryGetInt64Field, Decode_tryGetIntArrayField, Decode_tryGetLoadListingField, Decode_tryGetPresentField, Decode_tryGetStringField, Decode_tryGetYamlField, Decode_versionDecoder, Decode_withDefaultCwlVersion, Decode_workReuseRequirementDecoder, Decode_workflowDecoder, Decode_workflowStepRunDecoder, Decode_yamlElementOptionFieldDecoder, ResizeArray_map };
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