@nfdi4plants/arctrl 3.1.1 → 3.2.0

package/dist/ts/ts/Core/Conversion.js

@@ -1,36 +1,36 @@
-import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { toText, printf, concat, toFail } from '../../node_modules/@fable-org/fable-library-ts/String.js';
 import { Comment$ } from './Comment.js';
-import { choose, tryPick, indexed, toList, filter, map as map$1, delay, append, singleton as singleton$1, empty as empty$1, fold, zip as zip$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { defaultArg, map, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { choose, tryPick, indexed, toList, filter, map, delay, append, singleton as singleton$1, empty as empty$1, fold, zip as zip$1 } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
+import { defaultArg, value, unwrap, some } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { ResizeArray_filter, Option_fromValueWithDefault, ResizeArray_singleton } from './Helper/Collections.js';
 import { OntologyAnnotation } from './OntologyAnnotation.js';
-import { Value, Value_Ontology, Value_Name } from './Value.js';
+import { ScalarValue, ScalarValue_Ontology, ScalarValue_Name } from './ScalarValue.js';
+import { Exception, int32ToString, stringHash, arrayHash, equalArrays, comparePrimitives, getEnumerator, disposeSafe, safeHash, equals } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
 import { CompositeCell_Unitized, CompositeCell_Term, CompositeCell_FreeText } from './Table/CompositeCell.js';
-import { Component_create_Z2F0B38C7 } from './Process/Component.js';
-import { CompositeHeader_Component, CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Input, IOType_Source, IOType_Data, IOType_Material, IOType_Sample, CompositeHeader_Output, CompositeHeader_ProtocolREF, CompositeHeader_ProtocolType, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolVersion, CompositeHeader_Comment } from './Table/CompositeHeader.js';
+import { Component_create_Z7A4FC9 } from './Process/Component.js';
+import { CompositeHeader_Component, CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Input, IOType, CompositeHeader_Output, CompositeHeader, CompositeHeader_Comment$ } from './Table/CompositeHeader.js';
 import { ProtocolParameter } from './Process/ProtocolParameter.js';
 import { ProcessParameterValue } from './Process/ProcessParameterValue.js';
-import { FactorValue_create_30BDC49 } from './Process/FactorValue.js';
+import { FactorValue_create_6E061C87 } from './Process/FactorValue.js';
 import { Factor } from './Process/Factor.js';
-import { toString } from '../../node_modules/@fable-org/fable-library-js/Types.js';
-import { MaterialAttributeValue_create_ZE1D108D } from './Process/MaterialAttributeValue.js';
+import { toString } from '../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { MaterialAttributeValue_create_Z3D1B2C3 } from './Process/MaterialAttributeValue.js';
 import { MaterialAttribute_create_A220A8A } from './Process/MaterialAttribute.js';
 import { ProcessInput_createSource_Z5E00540E, ProcessInput_createMaterial_4452CB4C, ProcessInput_createRawData_Z721C83C5, ProcessInput_createSample_Z598187B7, ProcessInput_Source, ProcessInput__isSample, ProcessInput__isSource, ProcessInput__get_Name, ProcessInput_setCharacteristicValues, ProcessInput__isData, ProcessInput__isMaterial, ProcessInput_getCharacteristicValues_5B3D5BA9 } from './Process/ProcessInput.js';
 import { ProcessOutput_createMaterial_4452CB4C, ProcessOutput_createRawData_Z721C83C5, ProcessOutput_createSample_Z598187B7, ProcessOutput_Sample, ProcessOutput__isSample, ProcessOutput__get_Name, ProcessOutput_setFactorValues, ProcessOutput__isData, ProcessOutput__isMaterial, ProcessOutput_getFactorValues_Z42C11600 } from './Process/ProcessOutput.js';
-import { int32ToString, stringHash, arrayHash, equalArrays, comparePrimitives, getEnumerator, disposeSafe, safeHash, equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { Sample_create_62424AD2 } from './Process/Sample.js';
+import { Source_create_Z5CA08497 } from './Process/Source.js';
 import { ActivePatterns_$007CRegex$007C_$007C } from './Helper/Regex.js';
 import { ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, tryGetParameterColumnIndex, tryGetComponentIndex, tryGetCharacteristicColumnIndex, tryGetFactorColumnIndex, ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex, ARCtrl_Process_Component__Component_TryGetColumnIndex } from './Process/ColumnIndex.js';
 import { Unchecked_tryGetCellAt, getEmptyCellForHeader, Unchecked_alignByHeaders } from './Table/ArcTableAux.js';
 import { ArcTable } from './Table/ArcTable.js';
-import { choose as choose$1, singleton, ofArray, isEmpty, length, empty, map as map$2, item, mapIndexed, collect, tryPick as tryPick$1, head, sortBy, append as append$1, zip, initialize } from '../../node_modules/@fable-org/fable-library-js/List.js';
-import { Source_create_Z5CA08497 } from './Process/Source.js';
-import { Sample_create_62424AD2 } from './Process/Sample.js';
+import { choose as choose$1, singleton, ofArray, isEmpty, length, empty, map as map$1, item, mapIndexed, collect, tryPick as tryPick$1, head, sortBy, append as append$1, zip, initialize } from '../../node_modules/@fable-org/fable-library-ts/List.js';
 import { Process_composeName, Process_make, Process_decomposeName_Z721C83C5, Process_create_Z7C1F7FA9 } from './Process/Process.js';
 import { Protocol_make, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType, Protocol_create_Z414665E7 } from './Process/Protocol.js';
-import { List_groupBy, List_distinct } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
+import { List_groupBy, List_distinct } from '../../node_modules/@fable-org/fable-library-ts/Seq2.js';
 import { createMissingIdentifier } from './Helper/Identifier.js';
 import { boxHashOption, boxHashSeq } from './Helper/HashCodes.js';
-import { rangeDouble } from '../../node_modules/@fable-org/fable-library-js/Range.js';
+import { rangeDouble } from '../../node_modules/@fable-org/fable-library-ts/Range.js';
 import { ArcTables } from './Table/ArcTables.js';
 
 const Person_orcidKey = "ORCID";
@@ -47,7 +47,8 @@ function Person_setSourceAssayComment(person, assayIdentifier) {
 }
 function Person_getSourceAssayIdentifiersFromComments(person) {
   return choose((c) => {
-    if (defaultArg(map((n) => n.startsWith(Person_AssayIdentifierPrefix), c.Name), false)) {
+    let option_1 = void 0, n = void 0;
+    if (defaultArg((option_1 = c.Name, option_1 != null ? (n = value(option_1), n.startsWith(Person_AssayIdentifierPrefix)) : void 0), false)) {
       return c.Value;
     } else {
       return void 0;
@@ -95,7 +96,7 @@ function Person_setCommentFromORCID(person) {
   return person_1;
 }
 function JsonTypes_valueOfCell(value) {
-  let term;
+  let term = void 0;
   switch (value.tag) {
     case /* Term */
     0:
@@ -104,31 +105,31 @@ function JsonTypes_valueOfCell(value) {
         return [void 0, void 0];
       } else {
         const term_2 = value.fields[0];
-        return [Value_Ontology(term_2), void 0];
+        return [ScalarValue_Ontology(term_2), void 0];
       }
     case /* Unitized */
     2: {
       const text_1 = value.fields[0];
       const unit = value.fields[1];
-      return [text_1 === "" ? void 0 : Value.fromString(text_1), unit.isEmpty() ? void 0 : unit];
+      return [text_1 === "" ? void 0 : ScalarValue.fromString(text_1), unit.isEmpty() ? void 0 : unit];
     }
     case /* Data */
     3: {
       const data = value.fields[0];
-      throw new Error("Data cell should not be parsed to isa value");
+      throw new Exception("Data cell should not be parsed to isa value");
     }
     default:
       if (value.fields[0] === "") {
         return [void 0, void 0];
       } else {
         const text = value.fields[0];
-        return [Value.fromString(text), void 0];
+        return [ScalarValue.fromString(text), void 0];
       }
   }
 }
 function JsonTypes_composeComponent(header, value) {
   const patternInput = JsonTypes_valueOfCell(value);
-  return Component_create_Z2F0B38C7(unwrap(patternInput[0]), unwrap(patternInput[1]), header.ToTerm());
+  return Component_create_Z7A4FC9(unwrap(patternInput[0]), unwrap(patternInput[1]), header.ToTerm());
 }
 function JsonTypes_composeParameterValue(header, value) {
   const patternInput = JsonTypes_valueOfCell(value);
@@ -137,14 +138,14 @@ function JsonTypes_composeParameterValue(header, value) {
 }
 function JsonTypes_composeFactorValue(header, value) {
   const patternInput = JsonTypes_valueOfCell(value);
-  return FactorValue_create_30BDC49(void 0, Factor.create(toString(header), header.ToTerm()), unwrap(patternInput[0]), unwrap(patternInput[1]));
+  return FactorValue_create_6E061C87(void 0, Factor.create(toString(header), header.ToTerm()), unwrap(patternInput[0]), unwrap(patternInput[1]));
 }
 function JsonTypes_composeCharacteristicValue(header, value) {
   const patternInput = JsonTypes_valueOfCell(value);
-  return MaterialAttributeValue_create_ZE1D108D(void 0, MaterialAttribute_create_A220A8A(void 0, header.ToTerm()), unwrap(patternInput[0]), unwrap(patternInput[1]));
+  return MaterialAttributeValue_create_Z3D1B2C3(void 0, MaterialAttribute_create_A220A8A(void 0, header.ToTerm()), unwrap(patternInput[0]), unwrap(patternInput[1]));
 }
 function JsonTypes_composeFreetextMaterialName(headerFT, name) {
-  return `${headerFT}=${name}`;
+  return concat(headerFT, "=", name);
 }
 function JsonTypes_composeProcessInput(header, value) {
   if (header.tag === /* Input */
@@ -172,7 +173,7 @@ function JsonTypes_composeProcessInput(header, value) {
   }
 }
 function JsonTypes_composeProcessOutput(header, value) {
-  let matchResult, ft;
+  let matchResult = void 0, ft = void 0;
   if (header.tag === /* Output */
   12) {
     switch (header.fields[0].tag) {
@@ -212,8 +213,8 @@ function JsonTypes_composeProcessOutput(header, value) {
   }
 }
 function JsonTypes_cellOfValue(value$1, unit) {
-  const value_2 = defaultArg(value$1, Value_Name(""));
-  let matchResult, oa, text, name, u, f, u_1, f_1, i, u_2, i_1;
+  const value_2 = defaultArg(value$1, ScalarValue_Name(""));
+  let matchResult = void 0, oa = void 0, text = void 0, name = void 0, u = void 0, f = void 0, u_1 = void 0, f_1 = void 0, i = void 0, u_2 = void 0, i_1 = void 0;
   switch (value_2.tag) {
     case /* Name */
     3: {
@@ -304,10 +305,10 @@ function JsonTypes_decomposeProcessInput(pi) {
   switch (pi.tag) {
     case /* Sample */
     1:
-      return [CompositeHeader_Input(IOType_Sample()), CompositeCell_FreeText(defaultArg(pi.fields[0].Name, ""))];
+      return [CompositeHeader_Input(IOType.Sample), CompositeCell_FreeText(defaultArg(pi.fields[0].Name, ""))];
     case /* Material */
     3:
-      return [CompositeHeader_Input(IOType_Material()), CompositeCell_FreeText(defaultArg(pi.fields[0].Name, ""))];
+      return [CompositeHeader_Input(IOType.Material), CompositeCell_FreeText(defaultArg(pi.fields[0].Name, ""))];
     case /* Data */
     2: {
       const d = pi.fields[0];
@@ -315,23 +316,23 @@ function JsonTypes_decomposeProcessInput(pi) {
       switch (dataType.tag) {
         case /* RawDataFile */
         0:
-          return [CompositeHeader_Input(IOType_Data()), CompositeCell_FreeText(defaultArg(d.Name, ""))];
+          return [CompositeHeader_Input(IOType.Data), CompositeCell_FreeText(defaultArg(d.Name, ""))];
         case /* DerivedDataFile */
         1:
-          return [CompositeHeader_Input(IOType_Data()), CompositeCell_FreeText(defaultArg(d.Name, ""))];
+          return [CompositeHeader_Input(IOType.Data), CompositeCell_FreeText(defaultArg(d.Name, ""))];
         default:
-          return [CompositeHeader_Input(IOType_Data()), CompositeCell_FreeText(defaultArg(d.Name, ""))];
+          return [CompositeHeader_Input(IOType.Data), CompositeCell_FreeText(defaultArg(d.Name, ""))];
       }
     }
     default:
-      return [CompositeHeader_Input(IOType_Source()), CompositeCell_FreeText(defaultArg(pi.fields[0].Name, ""))];
+      return [CompositeHeader_Input(IOType.Source), CompositeCell_FreeText(defaultArg(pi.fields[0].Name, ""))];
   }
 }
 function JsonTypes_decomposeProcessOutput(po) {
   switch (po.tag) {
     case /* Material */
     2:
-      return [CompositeHeader_Output(IOType_Material()), CompositeCell_FreeText(defaultArg(po.fields[0].Name, ""))];
+      return [CompositeHeader_Output(IOType.Material), CompositeCell_FreeText(defaultArg(po.fields[0].Name, ""))];
     case /* Data */
     1: {
       const d = po.fields[0];
@@ -339,24 +340,24 @@ function JsonTypes_decomposeProcessOutput(po) {
       switch (dataType.tag) {
         case /* RawDataFile */
         0:
-          return [CompositeHeader_Output(IOType_Data()), CompositeCell_FreeText(defaultArg(d.Name, ""))];
+          return [CompositeHeader_Output(IOType.Data), CompositeCell_FreeText(defaultArg(d.Name, ""))];
         case /* DerivedDataFile */
         1:
-          return [CompositeHeader_Output(IOType_Data()), CompositeCell_FreeText(defaultArg(d.Name, ""))];
+          return [CompositeHeader_Output(IOType.Data), CompositeCell_FreeText(defaultArg(d.Name, ""))];
         default:
-          return [CompositeHeader_Output(IOType_Data()), CompositeCell_FreeText(defaultArg(d.Name, ""))];
+          return [CompositeHeader_Output(IOType.Data), CompositeCell_FreeText(defaultArg(d.Name, ""))];
       }
     }
     default:
-      return [CompositeHeader_Output(IOType_Sample()), CompositeCell_FreeText(defaultArg(po.fields[0].Name, ""))];
+      return [CompositeHeader_Output(IOType.Sample), CompositeCell_FreeText(defaultArg(po.fields[0].Name, ""))];
   }
 }
 function JsonTypes_composeTechnologyPlatform(tp) {
   const matchValue = tp.TANInfo;
   if (matchValue == null) {
-    return `${tp.NameText}`;
+    return tp.NameText;
   } else {
-    return `${tp.NameText} (${tp.TermAccessionShort})`;
+    return concat(tp.NameText, " (", tp.TermAccessionShort, ")");
   }
 }
 function JsonTypes_decomposeTechnologyPlatform(name) {
@@ -380,7 +381,7 @@ function ProcessParsing_tryComponentGetter(generalI, valueI, valueHeader) {
     ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(newOA, valueI);
     const cat = CompositeHeader_Component(newOA);
     return (table) => (i) => {
-      let matchValue;
+      let matchValue = void 0;
       return JsonTypes_composeComponent(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
     };
   } else {
@@ -392,7 +393,7 @@ function ProcessParsing_tryParameterGetter(generalI, valueI, valueHeader) {
   3) {
     const cat = CompositeHeader_Parameter(ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0]));
     return (table) => (i_1) => {
-      let matchValue;
+      let matchValue = void 0;
       return JsonTypes_composeParameterValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
     };
   } else {
@@ -404,7 +405,7 @@ function ProcessParsing_tryFactorGetter(generalI, valueI, valueHeader) {
   2) {
     const cat = CompositeHeader_Factor(ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0]));
     return (table) => (i_1) => {
-      let matchValue;
+      let matchValue = void 0;
       return JsonTypes_composeFactorValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
     };
   } else {
@@ -416,7 +417,7 @@ function ProcessParsing_tryCharacteristicGetter(generalI, valueI, valueHeader) {
   1) {
     const cat = CompositeHeader_Characteristic(ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(valueI, valueHeader.fields[0]));
     return (table) => (i_1) => {
-      let matchValue;
+      let matchValue = void 0;
       return JsonTypes_composeCharacteristicValue(cat, (matchValue = Unchecked_tryGetCellAt(generalI, i_1, table.Values), matchValue == null ? getEmptyCellForHeader(cat, void 0) : value(matchValue)));
     };
   } else {
@@ -506,9 +507,9 @@ function ProcessParsing_tryGetProtocolVersionGetter(generalI, header) {
 function ProcessParsing_tryGetInputGetter(generalI, header) {
   if (header.tag === /* Input */
   11) {
-    const io = header.fields[0];
+    header.fields[0];
     return (table) => (i) => {
-      let matchValue;
+      let matchValue = void 0;
       return JsonTypes_composeProcessInput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : value(matchValue)));
     };
   } else {
@@ -518,9 +519,9 @@ function ProcessParsing_tryGetInputGetter(generalI, header) {
 function ProcessParsing_tryGetOutputGetter(generalI, header) {
   if (header.tag === /* Output */
   12) {
-    const io = header.fields[0];
+    header.fields[0];
     return (table) => (i) => {
-      let matchValue;
+      let matchValue = void 0;
       return JsonTypes_composeProcessOutput(header, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), matchValue == null ? getEmptyCellForHeader(header, void 0) : value(matchValue)));
     };
   } else {
@@ -572,11 +573,11 @@ function ProcessParsing_getProcessGetter(processNameRoot, headers) {
   let inputGetter_1;
   const matchValue = tryPick((tupledArg_10) => ProcessParsing_tryGetInputGetter(tupledArg_10[0], tupledArg_10[1]), headers_1);
   if (matchValue == null) {
-    inputGetter_1 = (table_1) => (i_1) => singleton(ProcessInput_Source(Source_create_Z5CA08497(void 0, `${processNameRoot}_Input_${i_1}`, toList(map$1((f_1) => f_1(table_1)(i_1), charGetters)))));
+    inputGetter_1 = (table_1) => (i_1) => singleton(ProcessInput_Source(Source_create_Z5CA08497(void 0, `${processNameRoot}_Input_${i_1}`, toList(map((f_1) => f_1(table_1)(i_1), charGetters)))));
   } else {
     const inputGetter = value(matchValue);
     inputGetter_1 = (table) => (i) => {
-      const chars = toList(map$1((f) => f(table)(i), charGetters));
+      const chars = toList(map((f) => f(table)(i), charGetters));
       const input = inputGetter(table)(i);
       return !(ProcessInput__isSample(input) ? true : ProcessInput__isSource(input)) && !isEmpty(chars) ? ofArray([input, ProcessInput_createSample_Z598187B7(ProcessInput__get_Name(input), chars)]) : singleton(length(chars) > 0 ? ProcessInput_setCharacteristicValues(chars, input) : input);
     };
@@ -584,23 +585,28 @@ function ProcessParsing_getProcessGetter(processNameRoot, headers) {
   let outputGetter_1;
   const matchValue_1 = tryPick((tupledArg_11) => ProcessParsing_tryGetOutputGetter(tupledArg_11[0], tupledArg_11[1]), headers_1);
   if (matchValue_1 == null) {
-    outputGetter_1 = (table_3) => (i_3) => singleton(ProcessOutput_Sample(Sample_create_62424AD2(void 0, `${processNameRoot}_Output_${i_3}`, void 0, toList(map$1((f_3) => f_3(table_3)(i_3), factorValueGetters)))));
+    outputGetter_1 = (table_3) => (i_3) => singleton(ProcessOutput_Sample(Sample_create_62424AD2(void 0, `${processNameRoot}_Output_${i_3}`, void 0, toList(map((f_3) => f_3(table_3)(i_3), factorValueGetters)))));
   } else {
     const outputGetter = value(matchValue_1);
     outputGetter_1 = (table_2) => (i_2) => {
-      const factors = toList(map$1((f_2) => f_2(table_2)(i_2), factorValueGetters));
+      const factors = toList(map((f_2) => f_2(table_2)(i_2), factorValueGetters));
       const output = outputGetter(table_2)(i_2);
       return !ProcessOutput__isSample(output) && !isEmpty(factors) ? ofArray([output, ProcessOutput_createSample_Z598187B7(ProcessOutput__get_Name(output), void 0, factors)]) : singleton(length(factors) > 0 ? ProcessOutput_setFactorValues(factors, output) : output);
     };
   }
   return (table_4) => (i_4) => {
-    const pn = map((p) => Process_composeName(p, i_4), Option_fromValueWithDefault("", processNameRoot));
-    const paramvalues = Option_fromValueWithDefault(empty(), map$2((f_4) => f_4(table_4)(i_4), parameterValueGetters));
-    const parameters = map((list_5) => map$2((pv) => value(pv.Category), list_5), paramvalues);
-    const comments = Option_fromValueWithDefault(empty(), map$2((f_5) => f_5(table_4)(i_4), commentGetters));
+    let option_5 = void 0, option_7 = void 0, option_9 = void 0, option_11 = void 0, option_13 = void 0;
+    let pn;
+    const option_1 = Option_fromValueWithDefault("", processNameRoot);
+    pn = option_1 != null ? Process_composeName(value(option_1), i_4) : void 0;
+    const paramvalues = Option_fromValueWithDefault(empty(), map$1((f_4) => f_4(table_4)(i_4), parameterValueGetters));
+    let parameters;
+    const option_3 = paramvalues;
+    parameters = option_3 != null ? map$1((pv) => value(pv.Category), value(option_3)) : void 0;
+    const comments = Option_fromValueWithDefault(empty(), map$1((f_5) => f_5(table_4)(i_4), commentGetters));
     let protocol;
-    const p_1 = Protocol_make(void 0, map((f_6) => f_6(table_4)(i_4), protocolREFGetter), map((f_7) => f_7(table_4)(i_4), protocolTypeGetter), map((f_8) => f_8(table_4)(i_4), protocolDescriptionGetter), map((f_9) => f_9(table_4)(i_4), protocolURIGetter), map((f_10) => f_10(table_4)(i_4), protocolVersionGetter), parameters, Option_fromValueWithDefault(empty(), map$2((f_11) => f_11(table_4)(i_4), componentGetters)), void 0);
-    let matchResult;
+    const p_1 = Protocol_make(void 0, (option_5 = protocolREFGetter, option_5 != null ? value(option_5)(table_4)(i_4) : void 0), (option_7 = protocolTypeGetter, option_7 != null ? value(option_7)(table_4)(i_4) : void 0), (option_9 = protocolDescriptionGetter, option_9 != null ? value(option_9)(table_4)(i_4) : void 0), (option_11 = protocolURIGetter, option_11 != null ? value(option_11)(table_4)(i_4) : void 0), (option_13 = protocolVersionGetter, option_13 != null ? value(option_13)(table_4)(i_4) : void 0), parameters, Option_fromValueWithDefault(empty(), map$1((f_11) => f_11(table_4)(i_4), componentGetters)), void 0);
+    let matchResult = void 0;
     if (p_1.Name == null) {
       if (p_1.ProtocolType == null) {
         if (p_1.Description == null) {
@@ -656,21 +662,22 @@ function ProcessParsing_groupProcesses(ps) {
     }
   }, ps, {
     Equals: (x_1, y) => x_1 === y,
-    GetHashCode: stringHash
+    GetHashCode: (x_1) => stringHash(x_1) | 0
   });
 }
 function ProcessParsing_mergeIdenticalProcesses(processes) {
   const l = List_groupBy((x) => {
+    let option_1 = void 0, option_3 = void 0, option_5 = void 0, option_7 = void 0, option_9 = void 0, option_11 = void 0;
     if (x.Name != null && Process_decomposeName_Z721C83C5(value(x.Name))[1] != null) {
-      return [Process_decomposeName_Z721C83C5(value(x.Name))[0], boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
+      return [Process_decomposeName_Z721C83C5(value(x.Name))[0], boxHashOption(x.ExecutesProtocol), (option_1 = x.ParameterValues, option_1 != null ? some(boxHashSeq(value(option_1))) : void 0), (option_3 = x.Comments, option_3 != null ? some(boxHashSeq(value(option_3))) : void 0)];
     } else if (x.ExecutesProtocol != null && value(x.ExecutesProtocol).Name != null) {
-      return [value(value(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
+      return [value(value(x.ExecutesProtocol).Name), boxHashOption(x.ExecutesProtocol), (option_5 = x.ParameterValues, option_5 != null ? some(boxHashSeq(value(option_5))) : void 0), (option_7 = x.Comments, option_7 != null ? some(boxHashSeq(value(option_7))) : void 0)];
     } else {
-      return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), map(boxHashSeq, x.ParameterValues), map(boxHashSeq, x.Comments)];
+      return [createMissingIdentifier(), boxHashOption(x.ExecutesProtocol), (option_9 = x.ParameterValues, option_9 != null ? some(boxHashSeq(value(option_9))) : void 0), (option_11 = x.Comments, option_11 != null ? some(boxHashSeq(value(option_11))) : void 0)];
     }
   }, processes, {
     Equals: equalArrays,
-    GetHashCode: arrayHash
+    GetHashCode: (x_1) => arrayHash(x_1) | 0
   });
   return mapIndexed((i, tupledArg) => {
     const processes_1 = tupledArg[1];
@@ -682,21 +689,21 @@ function ProcessParsing_mergeIdenticalProcesses(processes) {
   }, l);
 }
 function ProcessParsing_processToRows(p) {
-  let list_4;
-  const pvs = map$2((ppv) => [JsonTypes_decomposeParameterValue(ppv), tryGetParameterColumnIndex(ppv)], defaultArg(p.ParameterValues, empty()));
+  let list_4 = void 0;
+  const pvs = map$1((ppv) => [JsonTypes_decomposeParameterValue(ppv), tryGetParameterColumnIndex(ppv)], defaultArg(p.ParameterValues, empty()));
   let components;
   const matchValue = p.ExecutesProtocol;
-  components = matchValue == null ? empty() : map$2((ppv_1) => [JsonTypes_decomposeComponent(ppv_1), tryGetComponentIndex(ppv_1)], defaultArg(value(matchValue).Components, empty()));
+  components = matchValue == null ? empty() : map$1((ppv_1) => [JsonTypes_decomposeComponent(ppv_1), tryGetComponentIndex(ppv_1)], defaultArg(value(matchValue).Components, empty()));
   let protVals;
   const matchValue_1 = p.ExecutesProtocol;
   if (matchValue_1 == null) {
     protVals = empty();
   } else {
     const prot_1 = value(matchValue_1);
-    protVals = toList(delay(() => append(prot_1.Name != null ? singleton$1([CompositeHeader_ProtocolREF(), CompositeCell_FreeText(value(prot_1.Name))]) : empty$1(), delay(() => append(prot_1.ProtocolType != null ? singleton$1([CompositeHeader_ProtocolType(), CompositeCell_Term(value(prot_1.ProtocolType))]) : empty$1(), delay(() => append(prot_1.Description != null ? singleton$1([CompositeHeader_ProtocolDescription(), CompositeCell_FreeText(value(prot_1.Description))]) : empty$1(), delay(() => append(prot_1.Uri != null ? singleton$1([CompositeHeader_ProtocolUri(), CompositeCell_FreeText(value(prot_1.Uri))]) : empty$1(), delay(() => prot_1.Version != null ? singleton$1([CompositeHeader_ProtocolVersion(), CompositeCell_FreeText(value(prot_1.Version))]) : empty$1()))))))))));
+    protVals = toList(delay(() => append(prot_1.Name != null ? singleton$1([CompositeHeader.ProtocolREF, CompositeCell_FreeText(value(prot_1.Name))]) : empty$1(), delay(() => append(prot_1.ProtocolType != null ? singleton$1([CompositeHeader.ProtocolType, CompositeCell_Term(value(prot_1.ProtocolType))]) : empty$1(), delay(() => append(prot_1.Description != null ? singleton$1([CompositeHeader.ProtocolDescription, CompositeCell_FreeText(value(prot_1.Description))]) : empty$1(), delay(() => append(prot_1.Uri != null ? singleton$1([CompositeHeader.ProtocolUri, CompositeCell_FreeText(value(prot_1.Uri))]) : empty$1(), delay(() => prot_1.Version != null ? singleton$1([CompositeHeader.ProtocolVersion, CompositeCell_FreeText(value(prot_1.Version))]) : empty$1()))))))))));
   }
-  const comments = map$2((c) => [CompositeHeader_Comment(defaultArg(c.Name, "")), CompositeCell_FreeText(defaultArg(c.Value, ""))], defaultArg(p.Comments, empty()));
-  return map$2((tupledArg_1) => {
+  const comments = map$1((c) => [CompositeHeader_Comment$(defaultArg(c.Name, "")), CompositeCell_FreeText(defaultArg(c.Value, ""))], defaultArg(p.Comments, empty()));
+  return map$1((tupledArg_1) => {
     const ios = tupledArg_1[1];
     const inputForCharas = defaultArg(tryPick$1((tupledArg_2) => {
       const i_2 = tupledArg_2[0];
@@ -714,7 +721,7 @@ function ProcessParsing_processToRows(p) {
         return void 0;
       }
     }, ios), head(ios)[0]);
-    const chars = map$2((cv) => [JsonTypes_decomposeCharacteristicValue(cv), tryGetCharacteristicColumnIndex(cv)], ProcessInput_getCharacteristicValues_5B3D5BA9(inputForCharas));
+    const chars = map$1((cv) => [JsonTypes_decomposeCharacteristicValue(cv), tryGetCharacteristicColumnIndex(cv)], ProcessInput_getCharacteristicValues_5B3D5BA9(inputForCharas));
     const outputForFactors = defaultArg(tryPick$1((tupledArg_4) => {
       const o_4 = tupledArg_4[1];
       if (ProcessOutput__isSample(o_4)) {
@@ -731,13 +738,13 @@ function ProcessParsing_processToRows(p) {
         return void 0;
       }
     }, ios), head(ios)[1]);
-    const vals = map$2((tuple_5) => tuple_5[0], sortBy((arg) => defaultArg(arg[1], 1e4), append$1(chars, append$1(components, append$1(pvs, map$2((fv) => [JsonTypes_decomposeFactorValue(fv), tryGetFactorColumnIndex(fv)], ProcessOutput_getFactorValues_Z42C11600(outputForFactors))))), {
-      Compare: comparePrimitives
+    const vals = map$1((tuple_5) => tuple_5[0], sortBy((arg) => defaultArg(arg[1], 1e4) | 0, append$1(chars, append$1(components, append$1(pvs, map$1((fv) => [JsonTypes_decomposeFactorValue(fv), tryGetFactorColumnIndex(fv)], ProcessOutput_getFactorValues_Z42C11600(outputForFactors))))), {
+      Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
     }));
     return toList(delay(() => append(singleton$1(JsonTypes_decomposeProcessInput(inputForType)), delay(() => append(protVals, delay(() => append(vals, delay(() => append(comments, delay(() => singleton$1(JsonTypes_decomposeProcessOutput(outputForType))))))))))));
   }, List_groupBy((tupledArg) => [ProcessInput__get_Name(tupledArg[0]), ProcessOutput__get_Name(tupledArg[1])], (list_4 = defaultArg(p.Outputs, empty()), zip(defaultArg(p.Inputs, empty()), list_4)), {
     Equals: equalArrays,
-    GetHashCode: arrayHash
+    GetHashCode: (x) => arrayHash(x) | 0
   }));
 }
 function ARCtrl_CompositeHeader__CompositeHeader_TryParameter(this$) {
@@ -769,17 +776,17 @@ function ARCtrl_CompositeHeader__CompositeHeader_TryCharacteristic(this$) {
 function ARCtrl_CompositeHeader__CompositeHeader_TryComponent(this$) {
   if (this$.tag === /* Component */
   0) {
-    return Component_create_Z2F0B38C7(void 0, void 0, this$.fields[0]);
+    return Component_create_Z7A4FC9(void 0, void 0, this$.fields[0]);
   } else {
     return void 0;
   }
 }
-function ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z6986DF18(value, unit) {
+function ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z2468E39A(value, unit) {
   return JsonTypes_cellOfValue(value, unit);
 }
 function CompositeRow_toProtocol(tableName, row) {
   return fold((p, hc) => {
-    let matchResult, oa, v, v_1, v_2, v_3, oa_1, oa_2, unit, v_4, oa_3, t;
+    let matchResult = void 0, oa = void 0, v = void 0, v_1 = void 0, v_2 = void 0, v_3 = void 0, oa_1 = void 0, oa_2 = void 0, unit = void 0, v_4 = void 0, oa_3 = void 0, t = void 0;
     switch (hc[0].tag) {
       case /* ProtocolType */
       4: {
@@ -882,15 +889,16 @@ function CompositeRow_toProtocol(tableName, row) {
       case 5:
         return Protocol_addParameter(ProtocolParameter.create(void 0, oa_1), p);
       case 6:
-        return Protocol_addComponent(Component_create_Z2F0B38C7(Value.fromString(v_4), unit, oa_2), p);
+        return Protocol_addComponent(Component_create_Z7A4FC9(ScalarValue.fromString(v_4), unit, oa_2), p);
       case 7:
-        return Protocol_addComponent(Component_create_Z2F0B38C7(Value_Ontology(t), void 0, oa_3), p);
+        return Protocol_addComponent(Component_create_Z7A4FC9(ScalarValue_Ontology(t), void 0, oa_3), p);
       default:
         return p;
     }
   }, Protocol_create_Z414665E7(void 0, tableName), row);
 }
 function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962(p) {
+  let option_6 = void 0, d = void 0, option_8 = void 0, d_1 = void 0, option_10 = void 0, d_2 = void 0, option_12 = void 0, d_3 = void 0, option_14 = void 0, d_4 = void 0;
   const t = ArcTable.init(defaultArg(p.Name, createMissingIdentifier()));
   const enumerator = getEnumerator(defaultArg(p.Parameters, empty()));
   try {
@@ -905,31 +913,23 @@ function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962(p) {
   try {
     while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
       const c = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
-      const v_1 = map((arg) => ResizeArray_singleton(ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z6986DF18(arg, unwrap(c.ComponentUnit))), c.ComponentValue);
+      let v_1;
+      const option_4 = c.ComponentValue;
+      v_1 = option_4 != null ? ResizeArray_singleton(ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z2468E39A(value(option_4), unwrap(c.ComponentUnit))) : void 0;
       t.AddColumn(CompositeHeader_Parameter(value(c.ComponentType)), unwrap(v_1), unwrap(ARCtrl_Process_Component__Component_TryGetColumnIndex(c)));
     }
   } finally {
     disposeSafe(enumerator_1);
   }
-  map((d) => {
-    t.AddProtocolDescriptionColumn(ResizeArray_singleton(d));
-  }, p.Description);
-  map((d_1) => {
-    t.AddProtocolVersionColumn(ResizeArray_singleton(d_1));
-  }, p.Version);
-  map((d_2) => {
-    t.AddProtocolTypeColumn(ResizeArray_singleton(d_2));
-  }, p.ProtocolType);
-  map((d_3) => {
-    t.AddProtocolUriColumn(ResizeArray_singleton(d_3));
-  }, p.Uri);
-  map((d_4) => {
-    t.AddProtocolNameColumn(ResizeArray_singleton(d_4));
-  }, p.Name);
+  option_6 = p.Description, option_6 != null ? some((d = value(option_6), t.AddProtocolDescriptionColumn(ResizeArray_singleton(d)))) : void 0;
+  option_8 = p.Version, option_8 != null ? some((d_1 = value(option_8), t.AddProtocolVersionColumn(ResizeArray_singleton(d_1)))) : void 0;
+  option_10 = p.ProtocolType, option_10 != null ? some((d_2 = value(option_10), t.AddProtocolTypeColumn(ResizeArray_singleton(d_2)))) : void 0;
+  option_12 = p.Uri, option_12 != null ? some((d_3 = value(option_12), t.AddProtocolUriColumn(ResizeArray_singleton(d_3)))) : void 0;
+  option_14 = p.Name, option_14 != null ? some((d_4 = value(option_14), t.AddProtocolNameColumn(ResizeArray_singleton(d_4)))) : void 0;
   return t;
 }
 function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
-  let source;
+  let source = void 0;
   if (this$.RowCount === 0) {
     return singleton((source = this$.Headers, fold((p, h) => {
       switch (h.tag) {
@@ -955,7 +955,7 @@ function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
         }
         case /* Component */
         0:
-          return Protocol_addComponent(Component_create_Z2F0B38C7(void 0, void 0, h.fields[0]), p);
+          return Protocol_addComponent(Component_create_Z7A4FC9(void 0, void 0, h.fields[0]), p);
         default:
           return p;
       }
@@ -968,7 +968,7 @@ function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
       return CompositeRow_toProtocol(this$.Name, row);
     }), {
       Equals: equals,
-      GetHashCode: safeHash
+      GetHashCode: (x) => safeHash(x) | 0
     });
   }
 }
@@ -982,7 +982,7 @@ function ARCtrl_ArcTable__ArcTable_GetProcesses(this$) {
       const clo_1 = clo(arg);
       return clo_1;
     };
-    return ProcessParsing_mergeIdenticalProcesses(toList(delay(() => map$1((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1)))));
+    return ProcessParsing_mergeIdenticalProcesses(toList(delay(() => map((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1)))));
   }
 }
 function ARCtrl_ArcTable__ArcTable_fromProcesses_Static(name, ps) {
@@ -993,11 +993,11 @@ function ARCtrl_ArcTables__ArcTables_GetProcesses(this$) {
   return collect(ARCtrl_ArcTable__ArcTable_GetProcesses, toList(this$.Tables));
 }
 function ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(ps) {
-  let collection;
-  return new ArcTables((collection = map$2((tupledArg) => {
+  let collection = void 0;
+  return new ArcTables((collection = map$1((tupledArg) => {
     const tupledArg_1 = Unchecked_alignByHeaders(true, collect(ProcessParsing_processToRows, tupledArg[1]));
     return ArcTable.fromArcTableValues(tupledArg[0], tupledArg_1[0], tupledArg_1[1]);
   }, ProcessParsing_groupProcesses(ps)), Array.from(collection)));
 }
 
-export { ARCtrl_ArcTable__ArcTable_GetProcesses, ARCtrl_ArcTable__ArcTable_GetProtocols, ARCtrl_ArcTable__ArcTable_fromProcesses_Static, ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962, ARCtrl_ArcTables__ArcTables_GetProcesses, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D, ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z6986DF18, ARCtrl_CompositeHeader__CompositeHeader_TryCharacteristic, ARCtrl_CompositeHeader__CompositeHeader_TryComponent, ARCtrl_CompositeHeader__CompositeHeader_TryFactor, ARCtrl_CompositeHeader__CompositeHeader_TryParameter, CompositeRow_toProtocol, JsonTypes_cellOfValue, JsonTypes_composeCharacteristicValue, JsonTypes_composeComponent, JsonTypes_composeFactorValue, JsonTypes_composeFreetextMaterialName, JsonTypes_composeParameterValue, JsonTypes_composeProcessInput, JsonTypes_composeProcessOutput, JsonTypes_composeTechnologyPlatform, JsonTypes_decomposeCharacteristicValue, JsonTypes_decomposeComponent, JsonTypes_decomposeFactorValue, JsonTypes_decomposeParameterValue, JsonTypes_decomposeProcessInput, JsonTypes_decomposeProcessOutput, JsonTypes_decomposeTechnologyPlatform, JsonTypes_valueOfCell, Person_AssayIdentifierPrefix, Person_createAssayIdentifierKey, Person_getSourceAssayIdentifiersFromComments, Person_orcidKey, Person_removeSourceAssayComments, Person_setCommentFromORCID, Person_setOrcidFromComments, Person_setSourceAssayComment, ProcessParsing_getProcessGetter, ProcessParsing_groupProcesses, ProcessParsing_mergeIdenticalProcesses, ProcessParsing_processToRows, ProcessParsing_tryCharacteristicGetter, ProcessParsing_tryComponentGetter, ProcessParsing_tryFactorGetter, ProcessParsing_tryGetCommentGetter, ProcessParsing_tryGetInputGetter, ProcessParsing_tryGetOutputGetter, ProcessParsing_tryGetProtocolDescriptionGetter, ProcessParsing_tryGetProtocolREFGetter, ProcessParsing_tryGetProtocolTypeGetter, ProcessParsing_tryGetProtocolURIGetter, ProcessParsing_tryGetProtocolVersionGetter, ProcessParsing_tryParameterGetter };
+export { ARCtrl_ArcTable__ArcTable_GetProcesses, ARCtrl_ArcTable__ArcTable_GetProtocols, ARCtrl_ArcTable__ArcTable_fromProcesses_Static, ARCtrl_ArcTable__ArcTable_fromProtocol_Static_3BF20962, ARCtrl_ArcTables__ArcTables_GetProcesses, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D, ARCtrl_CompositeCell__CompositeCell_fromValue_Static_Z2468E39A, ARCtrl_CompositeHeader__CompositeHeader_TryCharacteristic, ARCtrl_CompositeHeader__CompositeHeader_TryComponent, ARCtrl_CompositeHeader__CompositeHeader_TryFactor, ARCtrl_CompositeHeader__CompositeHeader_TryParameter, CompositeRow_toProtocol, JsonTypes_cellOfValue, JsonTypes_composeCharacteristicValue, JsonTypes_composeComponent, JsonTypes_composeFactorValue, JsonTypes_composeFreetextMaterialName, JsonTypes_composeParameterValue, JsonTypes_composeProcessInput, JsonTypes_composeProcessOutput, JsonTypes_composeTechnologyPlatform, JsonTypes_decomposeCharacteristicValue, JsonTypes_decomposeComponent, JsonTypes_decomposeFactorValue, JsonTypes_decomposeParameterValue, JsonTypes_decomposeProcessInput, JsonTypes_decomposeProcessOutput, JsonTypes_decomposeTechnologyPlatform, JsonTypes_valueOfCell, Person_AssayIdentifierPrefix, Person_createAssayIdentifierKey, Person_getSourceAssayIdentifiersFromComments, Person_orcidKey, Person_removeSourceAssayComments, Person_setCommentFromORCID, Person_setOrcidFromComments, Person_setSourceAssayComment, ProcessParsing_getProcessGetter, ProcessParsing_groupProcesses, ProcessParsing_mergeIdenticalProcesses, ProcessParsing_processToRows, ProcessParsing_tryCharacteristicGetter, ProcessParsing_tryComponentGetter, ProcessParsing_tryFactorGetter, ProcessParsing_tryGetCommentGetter, ProcessParsing_tryGetInputGetter, ProcessParsing_tryGetOutputGetter, ProcessParsing_tryGetProtocolDescriptionGetter, ProcessParsing_tryGetProtocolREFGetter, ProcessParsing_tryGetProtocolTypeGetter, ProcessParsing_tryGetProtocolURIGetter, ProcessParsing_tryGetProtocolVersionGetter, ProcessParsing_tryParameterGetter };

package/dist/ts/ts/Core/Data.d.ts

@@ -1,9 +1,9 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { DataFile_$union } from './DataFile.js';
-import { Comment$ } from './Comment.js';
-import { int32 } from '@fable-org/fable-library-js/Int32.js';
-import { IISAPrintable } from './Helper/Printer.js';
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { DataFile_$union } from './DataFile.ts';
+import { Comment$ } from './Comment.ts';
+import { int32 } from '@fable-org/fable-library-ts/Int32.ts';
+import { IISAPrintable } from './Helper/Printer.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
 export declare function DataAux_nameFromPathAndSelector(path: string, selector: string): string;
 export declare function DataAux_pathAndSelectorFromName(name: string): [string, Option<string>];
 export declare class Data implements IISAPrintable {

package/dist/ts/ts/Core/Data.d.ts.map

@@ -1 +1 @@
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