@nfdi4plants/arctrl 3.1.1 → 3.2.0

package/dist/ts/ts/CWLRunResolver.js

@@ -1,15 +1,15 @@
 import { normalizePathKey, normalize, resolvePathFromFile } from './FileSystem/Path.js';
-import { Record } from '../node_modules/@fable-org/fable-library-js/Types.js';
-import { FSharpMap__Add, FSharpMap__TryFind, empty } from '../node_modules/@fable-org/fable-library-js/Map.js';
+import { Record } from '../node_modules/@fable-org/fable-library-ts/Types.js';
+import { FSharpMap__Add, FSharpMap__TryFind, empty } from '../node_modules/@fable-org/fable-library-ts/Map.js';
 import { CWLProcessingUnit_$reflection, WorkflowStepRunOps_fromTool, WorkflowStepRunOps_fromOperation, WorkflowStepRunOps_fromExpressionTool, WorkflowStepRunOps_fromWorkflow, CWLProcessingUnit_Workflow, WorkflowStepRunOps_tryGetWorkflow } from './CWL/CWLProcessingUnit.js';
-import { stringHash, getEnumerator, disposeSafe, comparePrimitives } from '../node_modules/@fable-org/fable-library-js/Util.js';
-import { record_type, class_type, string_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
-import { isNullOrWhiteSpace, endsWith } from '../node_modules/@fable-org/fable-library-js/String.js';
-import { Array_distinct } from '../node_modules/@fable-org/fable-library-js/Seq2.js';
-import { item, map } from '../node_modules/@fable-org/fable-library-js/Array.js';
+import { stringHash, getEnumerator, disposeSafe, comparePrimitives } from '../node_modules/@fable-org/fable-library-ts/Util.js';
+import { record_type, class_type, string_type } from '../node_modules/@fable-org/fable-library-ts/Reflection.js';
+import { isNullOrWhiteSpace, endsWith } from '../node_modules/@fable-org/fable-library-ts/String.js';
+import { Array_distinct } from '../node_modules/@fable-org/fable-library-ts/Seq2.js';
+import { item, map } from '../node_modules/@fable-org/fable-library-ts/Array.js';
 import { WorkflowStepRun_RunString } from './CWL/WorkflowSteps.js';
-import { FSharpSet__Contains, FSharpSet__Add, empty as empty$1 } from '../node_modules/@fable-org/fable-library-js/Set.js';
-import { value } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { FSharpSet__Contains, FSharpSet__Add, empty as empty$1 } from '../node_modules/@fable-org/fable-library-ts/Set.js';
+import { value } from '../node_modules/@fable-org/fable-library-ts/Option.js';
 
 function pathKey(path) {
   return normalizePathKey(path);
@@ -24,7 +24,7 @@ function RunResolutionState_$reflection() {
   return record_type("ARCtrl.CWLRunResolver.RunResolutionState", [], RunResolutionState, () => [["Cache", class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, CWLProcessingUnit_$reflection()])]]);
 }
 function getRunNodeCandidates(workflowFilePath, runPath) {
-  let array;
+  let array = void 0;
   if (isNullOrWhiteSpace(runPath)) {
     return [];
   } else {
@@ -36,7 +36,7 @@ function getRunNodeCandidates(workflowFilePath, runPath) {
       const runPathInWorkflowDirectory = resolvePathFromFile(workflowFilePath, trimmedRunPath);
       return Array_distinct((array = [trimmedRunPath, normalizedRunPath, runPathInWorkflowDirectory, normalize(runPathInWorkflowDirectory)], array.filter((p) => !isNullOrWhiteSpace(p))), {
         Equals: (x, y) => x === y,
-        GetHashCode: stringHash
+        GetHashCode: (x) => stringHash(x) | 0
       });
     }
   }
@@ -101,7 +101,7 @@ function resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, activePat
       const candidates = getRunNodeCandidates(workflowFilePath, runPath);
       const candidateKeys = Array_distinct(map(pathKey, candidates), {
         Equals: (x, y) => x === y,
-        GetHashCode: stringHash
+        GetHashCode: (x) => stringHash(x) | 0
       });
       const tryResolveCandidate = (index_mut) => {
         tryResolveCandidate:
@@ -160,10 +160,10 @@ function resolveRunReferencesFromLookup(workflowFilePath, processingUnit, tryRes
     default: {
       const workflow = processingUnit.fields[0];
       const state = new RunResolutionState(empty({
-        Compare: comparePrimitives
+        Compare: (x, y) => comparePrimitives(x, y) | 0
       }));
       resolveWorkflowRunsRecursiveWithResolver(workflowFilePath, empty$1({
-        Compare: comparePrimitives
+        Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
       }), state, workflow, tryResolveRunPath);
       return CWLProcessingUnit_Workflow(workflow);
     }
@@ -171,10 +171,10 @@ function resolveRunReferencesFromLookup(workflowFilePath, processingUnit, tryRes
 }
 function resolveWorkflowStepRunFromLookup(workflowFilePath, run, tryResolveRunPath) {
   const state = new RunResolutionState(empty({
-    Compare: comparePrimitives
+    Compare: (x, y) => comparePrimitives(x, y) | 0
   }));
   return resolveWorkflowStepRunRecursiveWithResolver(workflowFilePath, empty$1({
-    Compare: comparePrimitives
+    Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
   }), state, run, tryResolveRunPath);
 }
 

package/dist/ts/ts/Contract/ARC.d.ts

@@ -1,5 +1,5 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
 /**
  * Tries to create READ contract with DTOType = ISA_Assay, ISA_Study or ISA_Investigation from given path relative to ARC root.
  */

package/dist/ts/ts/Contract/ARC.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAyEzE"}
+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAyEzE"}

package/dist/ts/ts/Contract/ARC.js

@@ -1,6 +1,6 @@
 import { split } from '../FileSystem/Path.js';
 import { $007CInvestigationPath$007C_$007C } from './ArcInvestigation.js';
-import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Contract } from './Contract.js';
 import { $007CAssayPath$007C_$007C } from './ArcAssay.js';
 import { $007CStudyPath$007C_$007C } from './ArcStudy.js';

package/dist/ts/ts/Contract/ArcAssay.d.ts

@@ -1,12 +1,13 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
-import { ArcAssay } from '../Core/ArcTypes.js';
-export declare function $007CAssayPath$007C_$007C(input: string[]): Option<string>;
-export declare function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$: ArcAssay, WithFolder: Option<boolean>): Contract[];
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
+import { ArcAssay } from '../Core/ArcTypes.ts';
+export declare function $007CAssayPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$: ArcAssay, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$: ArcAssay): Contract;
 export declare function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$: ArcAssay): Contract;
 export declare function ARCtrl_ArcAssay__ArcAssay_toDeleteContract_Static_1501C0F8(assay: ArcAssay): Contract;
-export declare function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay: ArcAssay, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay: ArcAssay, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcAssay__ArcAssay_toUpdateContract_Static_1501C0F8(assay: ArcAssay): Contract;
 export declare function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcAssay>;
 //# sourceMappingURL=ArcAssay.d.ts.map

package/dist/ts/ts/Contract/ArcAssay.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcAssay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcAssay.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAG/C,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BzE;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQ5H;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAE7H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,CA8B3G"}
+{"version":3,"file":"ArcAssay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcAssay.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAa,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAG/C,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BrF;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAQjI;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAEzI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,CAmC3G"}

package/dist/ts/ts/Contract/ArcAssay.js

@@ -1,15 +1,16 @@
-import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { combineMany, getAssayFolderPath } from '../FileSystem/Path.js';
-import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Assay_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F, ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcAssay.js';
-import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.1/FsWorkbook.fs.js';
 
 function $007CAssayPath$007C_$007C(input) {
-  let matchResult;
+  let matchResult = void 0;
   if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
     if (item(0, input) === "assays") {
       if (item(2, input) === "isa.assay.xlsx") {
@@ -25,7 +26,7 @@ function $007CAssayPath$007C_$007C(input) {
   }
   switch (matchResult) {
     case 0: {
-      const anyAssayName = item(1, input);
+      item(1, input);
       return combineMany(input);
     }
     default:
@@ -37,7 +38,7 @@ function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$, WithFolder)
   const path = Assay_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Assay", ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$));
   return toArray(delay(() => {
-    let folderFS;
+    let folderFS = void 0;
     return append(withFolder ? (folderFS = FileSystemTree.createAssaysFolder([FileSystemTree.createAssayFolder(this$.Identifier)]), collect((p) => p !== path && p !== "assays/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
   }));
 }
@@ -59,13 +60,17 @@ function ARCtrl_ArcAssay__ArcAssay_toUpdateContract_Static_1501C0F8(assay) {
   return ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(assay);
 }
 function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c) {
-  let matchResult, fsworkbook;
+  let matchResult = void 0, fsworkbook = void 0;
   if (c.Operation === "READ") {
     if (c.DTOType != null) {
       if (value(c.DTOType) === "ISA_Assay") {
         if (c.DTO != null) {
-          matchResult = 0;
-          fsworkbook = value(c.DTO);
+          if (value(c.DTO) instanceof FsWorkbook) {
+            matchResult = 0;
+            fsworkbook = value(c.DTO);
+          } else {
+            matchResult = 1;
+          }
         } else {
           matchResult = 1;
         }

package/dist/ts/ts/Contract/ArcInvestigation.d.ts

@@ -1,7 +1,8 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
-import { ArcInvestigation } from '../Core/ArcTypes.js';
-export declare function $007CInvestigationPath$007C_$007C(input: string[]): Option<string>;
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
+import { ArcInvestigation } from '../Core/ArcTypes.ts';
+export declare function $007CInvestigationPath$007C_$007C(input: MutableArray<string>): Option<string>;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToCreateContract(this$: ArcInvestigation): Contract;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$: ArcInvestigation): Contract;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toCreateContract_Static_Z720BD3FF(inv: ArcInvestigation): Contract;

package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcInvestigation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcInvestigation.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAGvD,wBAAgB,iCAAiC,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CAmBjF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,6EAA6E,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,gBAAgB,CAAC,CA8BnI"}
+{"version":3,"file":"ArcInvestigation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcInvestigation.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAa,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAGvD,wBAAgB,iCAAiC,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAmB7F;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,6EAA6E,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,gBAAgB,CAAC,CAmCnI"}

package/dist/ts/ts/Contract/ArcInvestigation.js

@@ -1,12 +1,13 @@
 import { combineMany } from '../FileSystem/Path.js';
-import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
-import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcInvestigation.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.1/FsWorkbook.fs.js';
 
 function $007CInvestigationPath$007C_$007C(input) {
-  let matchResult;
+  let matchResult = void 0;
   if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 1) {
     if (item(0, input) === "isa.investigation.xlsx") {
       matchResult = 0;
@@ -36,13 +37,17 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_toUpdateContract_Static_Z720B
   return ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(inv);
 }
 function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c) {
-  let matchResult, fsworkbook;
+  let matchResult = void 0, fsworkbook = void 0;
   if (c.Operation === "READ") {
     if (c.DTOType != null) {
       if (value(c.DTOType) === "ISA_Investigation") {
         if (c.DTO != null) {
-          matchResult = 0;
-          fsworkbook = value(c.DTO);
+          if (value(c.DTO) instanceof FsWorkbook) {
+            matchResult = 0;
+            fsworkbook = value(c.DTO);
+          } else {
+            matchResult = 1;
+          }
         } else {
           matchResult = 1;
         }

package/dist/ts/ts/Contract/ArcRun.d.ts

@@ -1,16 +1,17 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
-import { ArcRun } from '../Core/ArcTypes.js';
-import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
-import { CWLParameterReference } from '../CWL/ParameterReference.js';
-export declare function $007CRunPath$007C_$007C(input: string[]): Option<string>;
-export declare function $007CRunCWLPath$007C_$007C(input: string[]): Option<string>;
-export declare function $007CRunYMLPath$007C_$007C(input: string[]): Option<string>;
-export declare function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$: ArcRun, WithFolder: Option<boolean>): Contract[];
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
+import { ArcRun } from '../Core/ArcTypes.ts';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.ts';
+import { CWLParameterReference } from '../CWL/ParameterReference.ts';
+export declare function $007CRunPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function $007CRunCWLPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function $007CRunYMLPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$: ArcRun, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_ToDeleteContract(this$: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
-export declare function ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF(run: ArcRun, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF(run: ArcRun, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcRun>;
 export declare function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier: string, c: Contract): Option<CWLProcessingUnit_$union>;

package/dist/ts/ts/Contract/ArcRun.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAKzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAErE,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B1E;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B1E;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAWtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,wBAAwB,CAAC,CA0CxI;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAC,CA0CvI"}
+{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAa,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAKzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAErE,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BnF;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BtF;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BtF;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAW3H;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAEjI;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CAmCrG;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,wBAAwB,CAAC,CAyCxI;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAyCvI"}

package/dist/ts/ts/Contract/ArcRun.js

@@ -1,17 +1,18 @@
-import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { combineMany, getRunFolderPath } from '../FileSystem/Path.js';
-import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { defaultArg, value, unwrap } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Run_fileNameFromIdentifier, Run_cwlFileNameFromIdentifier, Run_ymlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcRun.js';
-import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
 import { encodeProcessingUnit } from '../CWL/Encode.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.1/FsWorkbook.fs.js';
 import { Decode_decodeCWLProcessingUnit, DecodeParameters_decodeYAMLParameterFile } from '../CWL/Decode.js';
 
 function $007CRunPath$007C_$007C(input) {
-  let matchResult;
+  let matchResult = void 0;
   if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
     if (item(0, input) === "runs") {
       if (item(2, input) === "isa.run.xlsx") {
@@ -27,7 +28,7 @@ function $007CRunPath$007C_$007C(input) {
   }
   switch (matchResult) {
     case 0: {
-      const anyRunName = item(1, input);
+      item(1, input);
       return combineMany(input);
     }
     default:
@@ -35,7 +36,7 @@ function $007CRunPath$007C_$007C(input) {
   }
 }
 function $007CRunCWLPath$007C_$007C(input) {
-  let matchResult;
+  let matchResult = void 0;
   if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
     if (item(0, input) === "runs") {
       if (item(2, input) === "run.cwl") {
@@ -51,7 +52,7 @@ function $007CRunCWLPath$007C_$007C(input) {
   }
   switch (matchResult) {
     case 0: {
-      const anyRunName = item(1, input);
+      item(1, input);
       return combineMany(input);
     }
     default:
@@ -59,7 +60,7 @@ function $007CRunCWLPath$007C_$007C(input) {
   }
 }
 function $007CRunYMLPath$007C_$007C(input) {
-  let matchResult;
+  let matchResult = void 0;
   if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
     if (item(0, input) === "runs") {
       if (item(2, input) === "run.yml") {
@@ -75,7 +76,7 @@ function $007CRunYMLPath$007C_$007C(input) {
   }
   switch (matchResult) {
     case 0: {
-      const anyRunName = item(1, input);
+      item(1, input);
       return combineMany(input);
     }
     default:
@@ -87,9 +88,9 @@ function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const path = Run_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
   return toArray(delay(() => {
-    let folderFS;
+    let folderFS = void 0;
     return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => {
-      let path_1, dto;
+      let path_1 = void 0, dto = void 0;
       return append(this$.CWLDescription != null ? (path_1 = Run_cwlFileNameFromIdentifier(this$.Identifier), dto = encodeProcessingUnit(value(this$.CWLDescription)), singleton(Contract.createCreate(path_1, "CWL", dto))) : empty(), delay(() => singleton(c)));
     }));
   }));
@@ -112,13 +113,17 @@ function ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8(run) {
   return ARCtrl_ArcRun__ArcRun_ToUpdateContract(run);
 }
 function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c) {
-  let matchResult, fsworkbook;
+  let matchResult = void 0, fsworkbook = void 0;
   if (c.Operation === "READ") {
     if (c.DTOType != null) {
       if (value(c.DTOType) === "ISA_Run") {
         if (c.DTO != null) {
-          matchResult = 0;
-          fsworkbook = value(c.DTO);
+          if (value(c.DTO) instanceof FsWorkbook) {
+            matchResult = 0;
+            fsworkbook = value(c.DTO);
+          } else {
+            matchResult = 1;
+          }
         } else {
           matchResult = 1;
         }
@@ -139,15 +144,14 @@ function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c) {
   }
 }
 function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier, c) {
-  let text;
   const p = Run_cwlFileNameFromIdentifier(runIdentifier);
-  let matchResult, text_1;
+  let matchResult = void 0, text_1 = void 0;
   if (c.Operation === "READ") {
     if (c.DTOType != null) {
       if (value(c.DTOType) === "CWL") {
         if (c.DTO != null) {
           if (typeof value(c.DTO) === "string") {
-            if (text = value(c.DTO), c.Path === p) {
+            if (value(c.DTO), c.Path === p) {
               matchResult = 0;
               text_1 = value(c.DTO);
             } else {
@@ -176,15 +180,14 @@ function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier, c) {
   }
 }
 function ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static(runIdentifier, c) {
-  let text;
   const p = Run_ymlFileNameFromIdentifier(runIdentifier);
-  let matchResult, text_1;
+  let matchResult = void 0, text_1 = void 0;
   if (c.Operation === "READ") {
     if (c.DTOType != null) {
       if (value(c.DTOType) === "YAML") {
         if (c.DTO != null) {
           if (typeof value(c.DTO) === "string") {
-            if (text = value(c.DTO), c.Path === p) {
+            if (value(c.DTO), c.Path === p) {
               matchResult = 0;
               text_1 = value(c.DTO);
             } else {

package/dist/ts/ts/Contract/ArcStudy.d.ts

@@ -1,13 +1,14 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
-import { ArcAssay, ArcStudy } from '../Core/ArcTypes.js';
-import { FSharpList } from '@fable-org/fable-library-js/List.js';
-export declare function $007CStudyPath$007C_$007C(input: string[]): Option<string>;
-export declare function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$: ArcStudy, WithFolder: Option<boolean>): Contract[];
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
+import { ArcAssay, ArcStudy } from '../Core/ArcTypes.ts';
+import { FSharpList } from '@fable-org/fable-library-ts/List.ts';
+export declare function $007CStudyPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$: ArcStudy, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this$: ArcStudy): Contract;
 export declare function ARCtrl_ArcStudy__ArcStudy_ToDeleteContract(this$: ArcStudy): Contract;
 export declare function ARCtrl_ArcStudy__ArcStudy_toDeleteContract_Static_1680536E(study: ArcStudy): Contract;
-export declare function ARCtrl_ArcStudy__ArcStudy_toCreateContract_Static_Z76BBA099(study: ArcStudy, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcStudy__ArcStudy_toCreateContract_Static_Z76BBA099(study: ArcStudy, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcStudy__ArcStudy_toUpdateContract_Static_1680536E(study: ArcStudy): Contract;
 export declare function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c: Contract): Option<[ArcStudy, FSharpList<ArcAssay>]>;
 //# sourceMappingURL=ArcStudy.d.ts.map

package/dist/ts/ts/Contract/ArcStudy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcStudy.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcStudy.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAEzD,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAEjE,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BzE;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQ5H;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAE7H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CA8BnI"}
+{"version":3,"file":"ArcStudy.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcStudy.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAa,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAEzD,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAEjE,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,YAAY,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BrF;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAQjI;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAEzI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAmCnI"}

package/dist/ts/ts/Contract/ArcStudy.js

@@ -1,15 +1,16 @@
-import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-ts/Array.js';
 import { combineMany, getStudyFolderPath } from '../FileSystem/Path.js';
-import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Study_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522, ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcStudy.js';
-import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.1/FsWorkbook.fs.js';
 
 function $007CStudyPath$007C_$007C(input) {
-  let matchResult;
+  let matchResult = void 0;
   if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
     if (item(0, input) === "studies") {
       if (item(2, input) === "isa.study.xlsx") {
@@ -25,7 +26,7 @@ function $007CStudyPath$007C_$007C(input) {
   }
   switch (matchResult) {
     case 0: {
-      const anyStudyName = item(1, input);
+      item(1, input);
       return combineMany(input);
     }
     default:
@@ -37,7 +38,7 @@ function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$, WithFolder)
   const path = Study_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$));
   return toArray(delay(() => {
-    let folderFS;
+    let folderFS = void 0;
     return append(withFolder ? (folderFS = FileSystemTree.createStudiesFolder([FileSystemTree.createStudyFolder(this$.Identifier)]), collect((p) => p !== path && p !== "studies/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
   }));
 }
@@ -59,13 +60,17 @@ function ARCtrl_ArcStudy__ArcStudy_toUpdateContract_Static_1680536E(study) {
   return ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(study);
 }
 function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c) {
-  let matchResult, fsworkbook;
+  let matchResult = void 0, fsworkbook = void 0;
   if (c.Operation === "READ") {
     if (c.DTOType != null) {
       if (value(c.DTOType) === "ISA_Study") {
         if (c.DTO != null) {
-          matchResult = 0;
-          fsworkbook = value(c.DTO);
+          if (value(c.DTO) instanceof FsWorkbook) {
+            matchResult = 0;
+            fsworkbook = value(c.DTO);
+          } else {
+            matchResult = 1;
+          }
         } else {
           matchResult = 1;
         }

package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -1,14 +1,15 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { Contract } from './Contract.js';
-import { ArcWorkflow } from '../Core/ArcTypes.js';
-import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
-export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
-export declare function $007CWorkflowCWLPath$007C_$007C(input: string[]): Option<string>;
-export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { Contract } from './Contract.ts';
+import { ArcWorkflow } from '../Core/ArcTypes.ts';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.ts';
+export declare function $007CWorkflowPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function $007CWorkflowCWLPath$007C_$007C(input: MutableArray<string>): Option<string>;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
-export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B(workflow: ArcWorkflow, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B(workflow: ArcWorkflow, WithFolder?: boolean): MutableArray<Contract>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcWorkflow>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static(workflowIdentifier: string, c: Contract): Option<CWLProcessingUnit_$union>;

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -1 +1 @@
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