@nfdi4plants/arctrl 3.1.1 → 3.2.0

package/dist/ts/ts/Core/Table/ArcTables.js

@@ -1,15 +1,16 @@
-import { tryFindIndex, findIndex, length, map, toList, delay, tryFind, choose, append, reduce } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { tryFindIndex, findIndex, length, map, toList, delay, tryFind, choose, append, reduce } from '../../../node_modules/@fable-org/fable-library-ts/Seq.js';
 import { ArcTable } from './ArcTable.js';
-import { value, defaultArg, unwrap, map as map$1, bind } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { CompositeHeader_Input, CompositeHeader_Output, CompositeHeader_ProtocolREF } from './CompositeHeader.js';
-import { getEnumerator, disposeSafe, compare, stringHash, comparePrimitives, equals, toIterator } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
+import { value, defaultArg, unwrap } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
+import { Exception, getEnumerator, disposeSafe, compare, stringHash, comparePrimitives, equals, toIterator } from '../../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { concat } from '../../../node_modules/@fable-org/fable-library-ts/String.js';
+import { CompositeHeader_Input, CompositeHeader_Output, CompositeHeader } from './CompositeHeader.js';
 import { Dictionary_tryFind, ResizeArray_iter, ResizeArray_fold, ResizeArray_map, ResizeArray_groupBy, ResizeArray_collect } from '../Helper/Collections.js';
-import { addToDict, addToSet } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
-import { distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
-import { intersect, ofSeq, FSharpSet__get_IsEmpty } from '../../../node_modules/@fable-org/fable-library-js/Set.js';
-import { insertRangeInPlace } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
-import { ofSeq as ofSeq$1, tryFind as tryFind$1 } from '../../../node_modules/@fable-org/fable-library-js/Map.js';
-import { class_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { addToDict, addToSet } from '../../../node_modules/@fable-org/fable-library-ts/MapUtil.js';
+import { distinct } from '../../../node_modules/@fable-org/fable-library-ts/Seq2.js';
+import { intersect, ofSeq, FSharpSet__get_IsEmpty } from '../../../node_modules/@fable-org/fable-library-ts/Set.js';
+import { item, insertRangeInPlace, setItem } from '../../../node_modules/@fable-org/fable-library-ts/Array.js';
+import { ofSeq as ofSeq$1, tryFind as tryFind$1 } from '../../../node_modules/@fable-org/fable-library-ts/Map.js';
+import { class_type } from '../../../node_modules/@fable-org/fable-library-ts/Reflection.js';
 
 function ArcTablesAux_tryFindIndexByTableName(name, tables) {
   return tryFindIndex((t) => t.Name === name, tables);
@@ -17,7 +18,7 @@ function ArcTablesAux_tryFindIndexByTableName(name, tables) {
 function ArcTablesAux_findIndexByTableName(name, tables) {
   const matchValue = tryFindIndex((t) => t.Name === name, tables);
   if (matchValue == null) {
-    throw new Error(`Unable to find table with name '${name}'!`);
+    throw new Exception(concat("Unable to find table with name '", name, "'!"));
   } else {
     return value(matchValue) | 0;
   }
@@ -107,27 +108,27 @@ function ArcTablesAux_applyIOMap(map, tables) {
   }
 }
 function ArcTablesAux_SanityChecks_validateSheetIndex(index, allowAppend, sheets) {
-  let x, y;
+  let x = void 0, y = void 0;
   if (index < 0) {
-    throw new Error("Cannot insert ArcTable at index < 0.");
+    throw new Exception("Cannot insert ArcTable at index < 0.");
   }
   if (x = index | 0, y = sheets.length | 0, allowAppend ? compare(x, y) > 0 : compare(x, y) >= 0) {
-    throw new Error(`Specified index is out of range! Assay contains only ${sheets.length} tables.`);
+    throw new Exception(`Specified index is out of range! Assay contains only ${sheets.length} tables.`);
   }
 }
 function ArcTablesAux_SanityChecks_validateNamesUnique(names) {
   if (!(length(names) === length(distinct(names, {
     Equals: (x, y) => x === y,
-    GetHashCode: stringHash
+    GetHashCode: (x) => stringHash(x) | 0
   })))) {
-    throw new Error("Cannot add multiple tables with the same name! Table names inside one assay must be unqiue");
+    throw new Exception("Cannot add multiple tables with the same name! Table names inside one assay must be unqiue");
   }
 }
 function ArcTablesAux_SanityChecks_validateNewNameUnique(newName, existingNames) {
   const matchValue = tryFindIndex((x) => x === newName, existingNames);
   if (matchValue == null) {
   } else {
-    throw new Error(`Cannot create table with name ${newName}, as table names must be unique and table at index ${value(matchValue)} has the same name.`);
+    throw new Exception(`Cannot create table with name ${newName}, as table names must be unique and table at index ${value(matchValue)} has the same name.`);
   }
 }
 function ArcTablesAux_SanityChecks_validateNewNameAtUnique(index, newName, existingNames) {
@@ -137,18 +138,18 @@ function ArcTablesAux_SanityChecks_validateNewNameAtUnique(index, newName, exist
     const i_1 = value(matchValue) | 0;
   } else {
     const i_2 = value(matchValue) | 0;
-    throw new Error(`Cannot create table with name ${newName}, as table names must be unique and table at index ${i_2} has the same name.`);
+    throw new Exception(`Cannot create table with name ${newName}, as table names must be unique and table at index ${i_2} has the same name.`);
   }
 }
 function ArcTablesAux_SanityChecks_validateNewNamesUnique(newNames, existingNames) {
   ArcTablesAux_SanityChecks_validateNamesUnique(newNames);
   const same = intersect(ofSeq(newNames, {
-    Compare: comparePrimitives
+    Compare: (x, y) => comparePrimitives(x, y) | 0
   }), ofSeq(existingNames, {
-    Compare: comparePrimitives
+    Compare: (x_1, y_1) => comparePrimitives(x_1, y_1) | 0
   }));
   if (!FSharpSet__get_IsEmpty(same)) {
-    throw new Error(`Cannot create tables with the names ${same}, as table names must be unique.`);
+    throw new Exception(`Cannot create tables with the names ${same}, as table names must be unique.`);
   }
 }
 class ArcTables {
@@ -165,7 +166,7 @@ class ArcTables {
   }
   get_Item(index) {
     const this$ = this;
-    return this$.Tables[index];
+    return item(index, this$.Tables);
   }
   get TableNames() {
     const this$ = this;
@@ -209,7 +210,7 @@ class ArcTables {
   GetTableAt(index) {
     const this$ = this;
     ArcTablesAux_SanityChecks_validateSheetIndex(index, false, this$.Tables);
-    return this$.Tables[index];
+    return item(index, this$.Tables);
   }
   TryGetTable(name) {
     const this$ = this;
@@ -224,7 +225,7 @@ class ArcTables {
     const this$ = this;
     ArcTablesAux_SanityChecks_validateSheetIndex(index, false, this$.Tables);
     ArcTablesAux_SanityChecks_validateNewNameAtUnique(index, table.Name, this$.TableNames);
-    this$.Tables[index] = table;
+    setItem(this$.Tables, index, table);
   }
   UpdateTable(name, table) {
     const this$ = this;
@@ -235,7 +236,7 @@ class ArcTables {
     const this$ = this;
     ArcTablesAux_SanityChecks_validateSheetIndex(index, true, this$.Tables);
     ArcTablesAux_SanityChecks_validateNewNameAtUnique(index, table.Name, this$.TableNames);
-    this$.Tables[index] = table;
+    setItem(this$.Tables, index, table);
   }
   SetTable(name, table) {
     const this$ = this;
@@ -260,7 +261,7 @@ class ArcTables {
   MapTableAt(index, updateFun) {
     const this$ = this;
     ArcTablesAux_SanityChecks_validateSheetIndex(index, false, this$.Tables);
-    updateFun(this$.Tables[index]);
+    updateFun(item(index, this$.Tables));
   }
   MapTable(name, updateFun) {
     const this$ = this;
@@ -375,20 +376,23 @@ class ArcTables {
     this$.Tables.splice(newIndex, 0, table);
   }
   static updateReferenceTablesBySheets(referenceTables, sheetTables, keepUnusedRefTables) {
-    let collection, s, a;
+    let collection = void 0, s = void 0;
     const keepUnusedRefTables_1 = defaultArg(keepUnusedRefTables, false);
     const usedTables = /* @__PURE__ */ new Set([]);
-    const referenceTableMap = ofSeq$1(choose((t) => map$1((c) => [c.Cells[0].AsFreeText, t], t.TryGetProtocolNameColumn()), referenceTables.Tables), {
-      Compare: comparePrimitives
+    const referenceTableMap = ofSeq$1(choose((t) => {
+      let c = void 0;
+      const option_1 = t.TryGetProtocolNameColumn();
+      if (option_1 != null) {
+        return c = value(option_1), [item(0, c.Cells).AsFreeText, t];
+      } else {
+        return void 0;
+      }
+    }, referenceTables.Tables), {
+      Compare: (x, y) => comparePrimitives(x, y) | 0
     });
-    return new ArcTables((collection = (s = ResizeArray_map((tupledArg) => reduce((table, table_1) => ArcTable.append(table, table_1), tupledArg[1]), ResizeArray_groupBy((t_2) => t_2.Name, ResizeArray_map((t_1) => {
-      const k = defaultArg(bind((c_1) => {
-        if (c_1.AsFreeText === "") {
-          return void 0;
-        } else {
-          return c_1.AsFreeText;
-        }
-      }, bind((i) => t_1.TryGetCellAt(i, 0), tryFindIndex((x_1) => equals(x_1, CompositeHeader_ProtocolREF()), t_1.Headers))), t_1.Name);
+    return new ArcTables((collection = (s = ResizeArray_map((tupledArg) => reduce((table_1, table_2) => ArcTable.append(table_1, table_2), tupledArg[1]), ResizeArray_groupBy((t_2) => t_2.Name, ResizeArray_map((t_1) => {
+      let option_5 = void 0, option_3 = void 0, i = void 0, c_1 = void 0;
+      const k = defaultArg((option_5 = (option_3 = tryFindIndex((x_1) => equals(x_1, CompositeHeader.ProtocolREF), t_1.Headers), option_3 != null ? (i = value(option_3) | 0, t_1.TryGetCellAt(i, 0)) : void 0), option_5 != null ? (c_1 = value(option_5), c_1.AsFreeText === "" ? void 0 : c_1.AsFreeText) : void 0), t_1.Name);
       const matchValue = tryFind$1(k, referenceTableMap);
       if (matchValue == null) {
         return t_1;
@@ -398,7 +402,7 @@ class ArcTables {
         const updatedTable = ArcTable.updateReferenceByAnnotationTable(rt, t_1);
         return ArcTable.fromArcTableValues(t_1.Name, updatedTable.Headers, updatedTable.Values);
       }
-    }, (a = sheetTables.Tables, ResizeArray_collect(ArcTable.SplitByProtocolREF, a))))), keepUnusedRefTables_1 ? append(choose((kv) => {
+    }, ResizeArray_collect((table) => ArcTable.SplitByProtocolREF(table), sheetTables.Tables)))), keepUnusedRefTables_1 ? append(choose((kv) => {
       if (usedTables.has(kv[0])) {
         return void 0;
       } else {

package/dist/ts/ts/Core/Table/CompositeCell.d.ts

@@ -1,8 +1,9 @@
-import { OntologyAnnotation } from '../OntologyAnnotation.js';
-import { Data } from '../Data.js';
-import { CompositeHeader_$union } from './CompositeHeader.js';
-import { Union } from '@fable-org/fable-library-js/Types.js';
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.ts';
+import { Data } from '../Data.ts';
+import { MutableArray } from '@fable-org/fable-library-ts/Util.ts';
+import { CompositeHeader_$union } from './CompositeHeader.ts';
+import { Union } from '@fable-org/fable-library-ts/Types.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
 export type CompositeCell_$union = CompositeCell<0> | CompositeCell<1> | CompositeCell<2> | CompositeCell<3>;
 export type CompositeCell_$cases = {
     0: ["Term", [OntologyAnnotation]];
@@ -15,18 +16,44 @@ export declare function CompositeCell_FreeText(Item: string): CompositeCell<1>;
 export declare function CompositeCell_Unitized(Item1: string, Item2: OntologyAnnotation): CompositeCell<2>;
 export declare function CompositeCell_Data(Item: Data): CompositeCell<3>;
 export declare class CompositeCell<Tag extends keyof CompositeCell_$cases> extends Union<Tag, CompositeCell_$cases[Tag][0]> {
+    constructor(tag: Tag, fields: CompositeCell_$cases[Tag][1]);
     readonly tag: Tag;
     readonly fields: CompositeCell_$cases[Tag][1];
-    constructor(tag: Tag, fields: CompositeCell_$cases[Tag][1]);
     cases(): string[];
     get isUnitized(): boolean;
     get isTerm(): boolean;
     get isFreeText(): boolean;
     get isData(): boolean;
+    /**
+     * This returns the default empty cell from an existing CompositeCell.
+     */
     GetEmptyCell(): CompositeCell_$union;
-    GetContent(): string[];
+    /**
+     * This function returns an array of all values as string
+     *
+     * ```fsharp
+     * match this with
+     * | FreeText s -> [|s|]
+     * | Term oa -> [| oa.NameText; defaultArg oa.TermSourceREF ""; defaultArg oa.TermAccessionNumber ""|]
+     * | Unitized (v,oa) -> [| v; oa.NameText; defaultArg oa.TermSourceREF ""; defaultArg oa.TermAccessionNumber ""|]
+     * ```
+     */
+    GetContent(): MutableArray<string>;
+    /**
+     * FreeText string will be converted to unit term name.
+     *
+     * Term will be converted to unit term.
+     */
     ToUnitizedCell(): CompositeCell_$union;
+    /**
+     * FreeText string will be converted to term name.
+     *
+     * Unit term will be converted to term and unit value is dropped.
+     */
     ToTermCell(): CompositeCell_$union;
+    /**
+     * Will always keep `OntologyAnnotation.NameText` from Term or Unit.
+     */
     ToFreeTextCell(): CompositeCell_$union;
     ToDataCell(): CompositeCell_$union;
     get AsUnitized(): [string, OntologyAnnotation];
@@ -44,7 +71,19 @@ export declare class CompositeCell<Tag extends keyof CompositeCell_$cases> exten
     static get emptyFreeText(): CompositeCell_$union;
     static get emptyUnitized(): CompositeCell_$union;
     static get emptyData(): CompositeCell_$union;
+    /**
+     * Updates current CompositeCell with information from OntologyAnnotation.
+     *
+     * For `Term`, OntologyAnnotation (oa) is fully set. For `Unitized`, oa is set as unit while value is untouched.
+     * For `FreeText` oa.NameText is set.
+     */
     UpdateWithOA(oa: OntologyAnnotation): CompositeCell_$union;
+    /**
+     * Updates current CompositeCell with information from OntologyAnnotation.
+     *
+     * For `Term`, OntologyAnnotation (oa) is fully set. For `Unitized`, oa is set as unit while value is untouched.
+     * For `FreeText` oa.NameText is set.
+     */
     static updateWithOA(oa: OntologyAnnotation, cell: CompositeCell_$union): CompositeCell_$union;
     toString(): string;
     Copy(): CompositeCell_$union;

package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"CompositeCell.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Table/CompositeCell.ts"],"names":[],"mappings":"AAEA,OAAO,EAAkC,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAE9F,OAAO,EAAoB,IAAI,EAAE,MAAM,YAAY,CAAC;AACpD,OAAO,EAAa,YAAY,EAAE,MAAM,qCAAqC,CAAC;AAE9E,OAAO,EAAE,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAC9D,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAA2B,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAE9F,MAAM,MAAM,oBAAoB,GAC1B,aAAa,CAAC,CAAC,CAAC,GAChB,aAAa,CAAC,CAAC,CAAC,GAChB,aAAa,CAAC,CAAC,CAAC,GAChB,aAAa,CAAC,CAAC,CAAC,CAAA;AAEtB,MAAM,MAAM,oBAAoB,GAAG;IAC/B,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,kBAAkB,CAAC,CAAC,CAAC;IAClC,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC;IAC1B,CAAC,EAAE,CAAC,UAAU,EAAE,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC,CAAC;IAC9C,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,CAAC,CAAA;CACtB,CAAA;AAED,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,kBAAkB,oBAE1D;AAED,wBAAgB,sBAAsB,CAAC,IAAI,EAAE,MAAM,oBAElD;AAED,wBAAgB,sBAAsB,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,kBAAkB,oBAE9E;AAED,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,IAAI,oBAE5C;AAED,qBAAa,aAAa,CAAC,GAAG,SAAS,MAAM,oBAAoB,CAAE,SAAQ,KAAK,CAAC,GAAG,EAAE,oBAAoB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;gBACnG,GAAG,EAAE,GAAG,EAAE,MAAM,EAAE,oBAAoB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAK1D,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC;IAClB,QAAQ,CAAC,MAAM,EAAE,oBAAoB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC9C,KAAK;IAGL,IAAI,UAAU,IAAI,OAAO,CAGxB;IACD,IAAI,MAAM,IAAI,OAAO,CAGpB;IACD,IAAI,UAAU,IAAI,OAAO,CAGxB;IACD,IAAI,MAAM,IAAI,OAAO,CAGpB;IACD;;OAEG;IACH,YAAY,IAAI,oBAAoB;IAIpC;;;;;;;;;OASG;IACH,UAAU,IAAI,YAAY,CAAC,MAAM,CAAC;IAmBlC;;;;OAIG;IACH,cAAc,IAAI,oBAAoB;IAiBtC;;;;OAIG;IACH,UAAU,IAAI,oBAAoB;IAiBlC;;OAEG;IACH,cAAc,IAAI,oBAAoB;IAmBtC,UAAU,IAAI,oBAAoB;IAmBlC,IAAI,UAAU,IAAI,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAQ7C;IACD,IAAI,MAAM,IAAI,kBAAkB,CAQ/B;IACD,IAAI,UAAU,IAAI,MAAM,CAQvB;IACD,IAAI,MAAM,IAAI,IAAI,CAQjB;IACD,MAAM,CAAC,UAAU,CAAC,EAAE,EAAE,kBAAkB,GAAG,oBAAoB;IAG/D,MAAM,CAAC,oBAAoB,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,oBAAoB;IAG5F,MAAM,CAAC,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,kBAAkB,GAAG,oBAAoB;IAGnF,MAAM,CAAC,wBAAwB,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,oBAAoB;IAI/G,MAAM,CAAC,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,oBAAoB;IAG1D,MAAM,CAAC,UAAU,CAAC,CAAC,EAAE,IAAI,GAAG,oBAAoB;IAGhD,MAAM,CAAC,oBAAoB,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,cAAc,CAAC,EAAE,MAAM,GAAG,oBAAoB;IAG1G,MAAM,KAAK,SAAS,IAAI,oBAAoB,CAE3C;IACD,MAAM,KAAK,aAAa,IAAI,oBAAoB,CAE/C;IACD,MAAM,KAAK,aAAa,IAAI,oBAAoB,CAE/C;IACD,MAAM,KAAK,SAAS,IAAI,oBAAoB,CAE3C;IACD;;;;;OAKG;IACH,YAAY,CAAC,EAAE,EAAE,kBAAkB,GAAG,oBAAoB;IAkB1D;;;;;OAKG;IACH,MAAM,CAAC,YAAY,CAAC,EAAE,EAAE,kBAAkB,EAAE,IAAI,EAAE,oBAAoB,GAAG,oBAAoB;IAG7F,QAAQ,IAAI,MAAM;IAmBlB,IAAI,IAAI,oBAAoB;IAmB5B,qBAAqB,CAAC,MAAM,EAAE,sBAAsB,EAAE,cAAc,CAAC,EAAE,OAAO,GAAG,OAAO;IA0BxF,MAAM,CAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,GAAG,oBAAoB;IAGzD,MAAM,CAAC,QAAQ,CAAC,CAAC,EAAE,MAAM,GAAG,oBAAoB;IAGhD,MAAM,CAAC,QAAQ,CAAC,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE,kBAAkB,GAAG,oBAAoB;IAGxE,MAAM,CAAC,IAAI,CAAC,CAAC,EAAE,IAAI,GAAG,oBAAoB;CAG7C;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD"}

package/dist/ts/ts/Core/Table/CompositeCell.js

@@ -1,8 +1,10 @@
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from '../OntologyAnnotation.js';
-import { defaultArg, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { defaultArg, unwrap } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { Data, Data_$reflection } from '../Data.js';
-import { Union } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
-import { union_type, string_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { Exception } from '../../../node_modules/@fable-org/fable-library-ts/Util.js';
+import { concat } from '../../../node_modules/@fable-org/fable-library-ts/String.js';
+import { Union } from '../../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { union_type, string_type } from '../../../node_modules/@fable-org/fable-library-ts/Reflection.js';
 
 function CompositeCell_Term(Item) {
   return new CompositeCell(0, [Item]);
@@ -45,6 +47,9 @@ class CompositeCell extends Union {
     return this$.tag === /* Data */
     3;
   }
+  /**
+   * This returns the default empty cell from an existing CompositeCell.
+   */
   GetEmptyCell() {
     const this$ = this;
     return this$.tag === /* Unitized */
@@ -52,6 +57,16 @@ class CompositeCell extends Union {
     1 ? CompositeCell.emptyFreeText : this$.tag === /* Data */
     3 ? CompositeCell.emptyData : CompositeCell.emptyTerm;
   }
+  /**
+   * This function returns an array of all values as string
+   * 
+   * ```fsharp
+   * match this with
+   * | FreeText s -> [|s|]
+   * | Term oa -> [| oa.NameText; defaultArg oa.TermSourceREF ""; defaultArg oa.TermAccessionNumber ""|]
+   * | Unitized (v,oa) -> [| v; oa.NameText; defaultArg oa.TermSourceREF ""; defaultArg oa.TermAccessionNumber ""|]
+   * ```
+   */
   GetContent() {
     const this$ = this;
     switch (this$.tag) {
@@ -74,6 +89,11 @@ class CompositeCell extends Union {
         return [this$.fields[0]];
     }
   }
+  /**
+   * FreeText string will be converted to unit term name.
+   * 
+   * Term will be converted to unit term.
+   */
   ToUnitizedCell() {
     const this$ = this;
     switch (this$.tag) {
@@ -94,6 +114,11 @@ class CompositeCell extends Union {
         return this$;
     }
   }
+  /**
+   * FreeText string will be converted to term name.
+   * 
+   * Unit term will be converted to term and unit value is dropped.
+   */
   ToTermCell() {
     const this$ = this;
     switch (this$.tag) {
@@ -114,6 +139,9 @@ class CompositeCell extends Union {
         return this$;
     }
   }
+  /**
+   * Will always keep `OntologyAnnotation.NameText` from Term or Unit.
+   */
   ToFreeTextCell() {
     const this$ = this;
     switch (this$.tag) {
@@ -164,7 +192,7 @@ class CompositeCell extends Union {
     2) {
       return [this$.fields[0], this$.fields[1]];
     } else {
-      throw new Error("Not a Unitized cell.");
+      throw new Exception("Not a Unitized cell.");
     }
   }
   get AsTerm() {
@@ -173,7 +201,7 @@ class CompositeCell extends Union {
     0) {
       return this$.fields[0];
     } else {
-      throw new Error("Not a Term Cell.");
+      throw new Exception("Not a Term Cell.");
     }
   }
   get AsFreeText() {
@@ -182,7 +210,7 @@ class CompositeCell extends Union {
     1) {
       return this$.fields[0];
     } else {
-      throw new Error("Not a FreeText Cell.");
+      throw new Exception("Not a FreeText Cell.");
     }
   }
   get AsData() {
@@ -191,7 +219,7 @@ class CompositeCell extends Union {
     3) {
       return this$.fields[0];
     } else {
-      throw new Error("Not a Data Cell.");
+      throw new Exception("Not a Data Cell.");
     }
   }
   static createTerm(oa) {
@@ -228,6 +256,12 @@ class CompositeCell extends Union {
   static get emptyData() {
     return CompositeCell_Data(Data.create());
   }
+  /**
+   * Updates current CompositeCell with information from OntologyAnnotation.
+   * 
+   * For `Term`, OntologyAnnotation (oa) is fully set. For `Unitized`, oa is set as unit while value is untouched.
+   * For `FreeText` oa.NameText is set.
+   */
   UpdateWithOA(oa) {
     const this$ = this;
     switch (this$.tag) {
@@ -249,6 +283,12 @@ class CompositeCell extends Union {
         return CompositeCell.createTerm(oa);
     }
   }
+  /**
+   * Updates current CompositeCell with information from OntologyAnnotation.
+   * 
+   * For `Term`, OntologyAnnotation (oa) is fully set. For `Unitized`, oa is set as unit while value is untouched.
+   * For `FreeText` oa.NameText is set.
+   */
   static updateWithOA(oa, cell) {
     return cell.UpdateWithOA(oa);
   }
@@ -261,16 +301,16 @@ class CompositeCell extends Union {
       case /* Unitized */
       2: {
         const oa_1 = this$.fields[1];
-        return `${this$.fields[0]} ${oa_1.NameText}`;
+        return concat(this$.fields[0], " ", oa_1.NameText);
       }
       case /* Data */
       3: {
         const d = this$.fields[0];
-        return `${d.NameText}`;
+        return d.NameText;
       }
       default: {
         const oa = this$.fields[0];
-        return `${oa.NameText}`;
+        return oa.NameText;
       }
     }
   }
@@ -304,7 +344,7 @@ class CompositeCell extends Union {
       return true;
     } else if (header.IsDataColumn) {
       if (raiseExeption) {
-        throw new Error(`Invalid combination of header \`${header}\` and cell \`${cell}\`, Data header should have either Data or Freetext cells`);
+        throw new Exception(`Invalid combination of header \`${header}\` and cell \`${cell}\`, Data header should have either Data or Freetext cells`);
       }
       return false;
     } else if (header.IsTermColumn && (cell.isTerm ? true : cell.isUnitized)) {
@@ -313,7 +353,7 @@ class CompositeCell extends Union {
       return true;
     } else {
       if (raiseExeption) {
-        throw new Error(`Invalid combination of header \`${header}\` and cell \`${cell}\``);
+        throw new Exception(`Invalid combination of header \`${header}\` and cell \`${cell}\``);
       }
       return false;
     }

package/dist/ts/ts/Core/Table/CompositeColumn.d.ts

@@ -1,17 +1,30 @@
-import { Option } from '@fable-org/fable-library-js/Option.js';
-import { CompositeHeader_$union } from './CompositeHeader.js';
-import { CompositeCell_$union } from './CompositeCell.js';
-import { OntologyAnnotation } from '../OntologyAnnotation.js';
-import { Record } from '@fable-org/fable-library-js/Types.js';
-import { IEquatable } from '@fable-org/fable-library-js/Util.js';
-import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Option } from '@fable-org/fable-library-ts/Option.ts';
+import { CompositeHeader_$union } from './CompositeHeader.ts';
+import { CompositeCell_$union } from './CompositeCell.ts';
+import { OntologyAnnotation } from '../OntologyAnnotation.ts';
+import { IEquatable } from '@fable-org/fable-library-ts/Util.ts';
+import { Record } from '@fable-org/fable-library-ts/Types.ts';
+import { TypeInfo } from '@fable-org/fable-library-ts/Reflection.ts';
 export declare class CompositeColumn extends Record implements IEquatable<CompositeColumn> {
     readonly Header: CompositeHeader_$union;
     readonly Cells: CompositeCell_$union[];
     constructor(Header: CompositeHeader_$union, Cells: CompositeCell_$union[]);
     static create(header: CompositeHeader_$union, cells?: CompositeCell_$union[]): CompositeColumn;
+    /**
+     * Returns true if header and cells are a valid combination. E.g. Term header with term or unitized cells. IO header with freetext cells.
+     *
+     * ?raiseExeption: Default false. Set true if this function should raise an exception instead of return false.
+     */
     Validate(raiseException?: boolean): boolean;
+    /**
+     * Returns an array of all units found in the cells of this column. Returns None if no units are found.
+     */
     TryGetColumnUnits(): Option<OntologyAnnotation[]>;
+    /**
+     * Simple predictor for empty default cells.
+     *
+     * Currently uses majority vote for the column to decide cell type.
+     */
     GetDefaultEmptyCell(): CompositeCell_$union;
     get IsUnique(): boolean;
 }

package/dist/ts/ts/Core/Table/CompositeColumn.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"CompositeColumn.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Table/CompositeColumn.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAsB,MAAM,uCAAuC,CAAC;AACnF,OAAO,EAA+B,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAC3F,OAAO,EAA4C,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAEpG,OAAO,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAC9D,OAAO,EAAE,UAAU,EAAgB,MAAM,qCAAqC,CAAC;AAE/E,OAAO,EAAE,MAAM,EAAE,MAAM,sCAAsC,CAAC;AAC9D,OAAO,EAA2B,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAE9F,qBAAa,eAAgB,SAAQ,MAAO,YAAW,UAAU,CAAC,eAAe,CAAC;IAC9E,QAAQ,CAAC,MAAM,EAAE,sBAAsB,CAAC;IACxC,QAAQ,CAAC,KAAK,EAAE,oBAAoB,EAAE,CAAC;gBAC3B,MAAM,EAAE,sBAAsB,EAAE,KAAK,EAAE,oBAAoB,EAAE;IAKzE,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,sBAAsB,EAAE,KAAK,CAAC,EAAE,oBAAoB,EAAE,GAAG,eAAe;IAG9F;;;;OAIG;IACH,QAAQ,CAAC,cAAc,CAAC,EAAE,OAAO,GAAG,OAAO;IAI3C;;OAEG;IACH,iBAAiB,IAAI,MAAM,CAAC,kBAAkB,EAAE,CAAC;IAOjD;;;;OAIG;IACH,mBAAmB,IAAI,oBAAoB;IAqB3C,IAAI,QAAQ,IAAI,OAAO,CAGtB;CACJ;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD"}

package/dist/ts/ts/Core/Table/CompositeColumn.js

@@ -1,9 +1,9 @@
-import { defaultArg, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { defaultArg, unwrap } from '../../../node_modules/@fable-org/fable-library-ts/Option.js';
 import { CompositeHeader_$reflection } from './CompositeHeader.js';
 import { CompositeCell, CompositeCell_$reflection } from './CompositeCell.js';
-import { exists, toArray, delay, collect, singleton, empty, isEmpty, fold } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { Record } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
-import { record_type, array_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { exists, toArray, delay, collect, singleton, empty, isEmpty, fold } from '../../../node_modules/@fable-org/fable-library-ts/Seq.js';
+import { Record } from '../../../node_modules/@fable-org/fable-library-ts/Types.js';
+import { record_type, array_type } from '../../../node_modules/@fable-org/fable-library-ts/Reflection.js';
 
 class CompositeColumn extends Record {
   constructor(Header, Cells) {
@@ -14,10 +14,18 @@ class CompositeColumn extends Record {
   static create(header, cells) {
     return new CompositeColumn(header, defaultArg(cells, []));
   }
+  /**
+   * Returns true if header and cells are a valid combination. E.g. Term header with term or unitized cells. IO header with freetext cells.
+   * 
+   * ?raiseExeption: Default false. Set true if this function should raise an exception instead of return false.
+   */
   Validate(raiseException) {
     const this$ = this;
     return !exists((c) => !c.ValidateAgainstHeader(this$.Header, unwrap(raiseException)), this$.Cells);
   }
+  /**
+   * Returns an array of all units found in the cells of this column. Returns None if no units are found.
+   */
   TryGetColumnUnits() {
     const this$ = this;
     let arr;
@@ -25,6 +33,11 @@ class CompositeColumn extends Record {
     arr = Array.from(collection);
     return isEmpty(arr) ? void 0 : arr;
   }
+  /**
+   * Simple predictor for empty default cells.
+   * 
+   * Currently uses majority vote for the column to decide cell type.
+   */
   GetDefaultEmptyCell() {
     const this$ = this;
     if (!this$.Header.IsTermColumn) {