xml_jats_resolver 0.0.1

data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-mathml3-mathmlsetup1.ent

@@ -0,0 +1,350 @@
+<!-- ============================================================= -->
+<!--  MODULE:    MathML DTD SETUP MODULE                           -->
+<!--  VERSION:   ANSI/NISO JATS Version 1.1 (Z39.96-2015)          -->
+<!--  DATE:      December 2015                                     -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) JATS DTD Suite MathML 3.0 Setup Module v1.1 20151215//EN"
+     Delivered as file "JATS-mathml3-mathmlsetup1.ent"             -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     JATS DTD Suite                                    -->
+<!--                                                               -->
+<!-- PURPOSE:    Provides the organization for using the           -->
+<!--             MathML 3.0 DTD                                    -->
+<!--              - Overrides to standard parameter entities used  -->
+<!--                in the MathML 3.0 DTD                          -->
+<!--             - Calls the MathML 3.0 DTD                        -->
+<!--                                                               -->
+<!-- MODULES REQUIRED:                                             -->
+<!--             1) mathml3.dtd  (MathML 3.0 DTD)                  -->
+<!--                                                               -->
+<!-- TAG SET SPONSOR                                               -->
+<!--             National Center for Biotechnology                 -->
+<!--                Information (NCBI)                             -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             This module was created for the JATS DTD Suite.   -->
+<!--             Digital archives and publishers may use the       -->
+<!--             DTD as is for markup of journal literature or     -->
+<!--             related material for archiving and transferring   -->
+<!--             such material between archives or create a        -->
+<!--             custom XML DTD from the Suite for                 -->
+<!--             these purposes.                                   -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the JATS DTD Suite    -->
+<!--                and intend to stay compatible with the suite,  -->
+<!--                then please include the following statement    -->
+<!--                as a comment in all of your DTD modules:       -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the ANSI/NISO Z39.96 Journal Article Tag   -->
+<!--                    Suite (JATS)."                             -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the ANSI/NISO Z39.96 Journal Article -->
+<!--                    Tag Suite (JATS)."                         -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             September 2013                                    -->
+<!--                                                               -->
+<!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96   -->
+<!--             Working Group. Mulberry Technologies was          -->
+<!--             supported by National Center for Biotechnology    -->
+<!--             Information (NCBI), a center of the US National   -->
+<!--             Library of Medicine (NLM).                        -->
+<!--                                                               -->
+<!--             This module is part of the JATS DTD Suite. The    -->
+<!--             Suite is a continuation of work done by NCBI,     -->
+<!--             Mulberry Technologies, and Inera Inc. on the NLM  -->
+<!--             Journal Archiving and Interchange DTD Suite, which-->
+<!--             was originally released in December, 2002.        -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  -->
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Inera Inc.'s collaboration with other DTD         -->
+<!--             authors in completing NLM Version 1.0. The        -->
+<!--             Andrew W. Mellon Foundation provided support for  -->
+<!--             these important contributions.                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+     =============================================================
+     JATS Version 1.1                (DAL/BTU) v1.1  (2015-12-15)
+
+     JATS is a continuing maintenance NISO Standard, which
+     requires voting by the ANSI and NISO memberships to be changed. 
+     JATS 1.1 was approved in late 2015, so the formal public 
+     identifiers were changed in the modules and the catalogs.
+     No model or attribute changes were made at this time. 
+ 
+ 10. JATS became version "1.1" and "v1.1 20151215"
+
+     =============================================================
+     JATS Version 1.1d3             (DAL/BTU) v1.1d3  (2015-03-01)
+   
+     The changes in this release are in response to NISO 
+     License and Indicators Recommended Practice.
+
+     NISO JATS is a continuing maintenance NISO Standard, which 
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1d3 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+     
+     This draft DTD represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee.
+
+  9. JATS became version "1.1d3" and "v1.1d3 20150301"
+    
+     =============================================================
+     NISO JATS Version 1.0             (DAL/BTU) v1.0 (2012-xx-xx)
+   
+     ANSI/NISO Z39.96-2012 (Version 1.0) 
+
+     Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
+     XSDs, RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.0/
+   
+  8. OASIS TABLE NAMESPACE MODIFICATIONS - Added a new module
+     that sets up the namespace URI and namespace prefix for
+     the OASIS tables models.
+  
+     =============================================================
+     NISO JATS Version 1.1d1           (DAL/BTU) v1.1 (2013-11-15)
+   
+     ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1d1) 
+
+     NISO JATS Standing Committee met and answered the requests and
+     suggestions from the NISO request forms.
+
+     Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
+     XSDs, RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.0/
+
+  7. PARAMETER ENTITY NAME CHANGE IN THE MATHML DTD
+     When MathML 2.0 became MathML 3.0, the parameter entity
+     %product.class; was defined both in the MathML 3.0 DTD and also 
+     in JATS-default-classes.ent. Renamed class in the MathML DTD
+     until JATS names can be changed. Renamed the MathML parameter 
+     entity to "mml-product.class".
+
+     The name of the parameter entity that establishes the model of
+     the <annotation-xml> element was changed.
+     "Annotation-xml.content" became "annotation-xml.model".
+
+  6. PARAMETER ENTITY NAME CHANGE - When MathML 2.0 became MathML 3.0,
+     the name of the parameter entity that establishes the model of
+     the <annotation-xml> element was changed.
+     "Annotation-xml.content" became "annotation-xml.model".
+
+  5.  MAJOR CHANGE: MathML 2.0 replaced with MathML 3.0
+
+     =============================================================
+     NISO JATS Version 1.0             (DAL/BTU) v1.0 (2012-xx-xx)
+   
+     ANSI/NISO Z39.96-2012 (Version 1.0) 
+
+     Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
+     XSDs, RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.0/
+   
+  4. Updated the DTD-version attribute to "1.0" and the formal
+     public identifier to the date: "v1.0 20120330//EN".
+
+     =============================================================
+     Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)
+   
+     This Tag Set is in the process of becoming a NISO standard.
+     The version numbers are starting over from 0.4", as a Trial
+     Use Draft, to be made into "Version 1.0" when the Tag Suite 
+     becomes a NISO standard. Thus, the version number that would
+     have been "NLM Version 3.1 Draft" has become NISO JATS
+     "Version 0.4".
+
+     Details on NISO Trial Use Draft Version 0.4 are available at
+           http://jats.nlm.nih.gov/JATS-0.4.
+   
+  3. Updated the DTD-version attribute to "0.4" 
+   
+  2. Updated the public identifier to "v0.4 20110131", 
+     modified the formal public identifier to include "JATS (Z39.96)",
+     and the filename as delivered to include "JATS" and the
+     new version number "0".
+
+     =============================================================
+     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)
+
+     Version 3.0 is the first non-backward-compatible release.
+     In addition to the usual incremental changes, some
+     elements and attributes have been renamed and/or remodeled
+     to better meet user needs and to increase tag set consistency.
+     All module change histories are available through the Tag Suite
+     web site at http://dtd.nlm.nih.gov.
+
+     Details on version 3.0 are available at
+           http://dtd.nlm.nih.gov/3.0.
+
+  1. Updated public identifier to "v3.0 20080202//EN"              -->
+
+<!-- ============================================================= -->
+<!-- Details concerning 
+     ANSI/NISO Z39.96-2015 JATS-based DTDs, XSDs, 
+     RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.1/                            -->
+
+<!-- ============================================================= -->
+<!--                    SET UP FOR THE MathML MODULE               -->
+<!-- ============================================================= -->
+
+
+<!--                    MathML DTD                                 -->
+<!--                    The official version of the MathML 3.0 can
+                        be found at: http://www.w3.org/TR/MathML3/
+
+                        PUBLIC "-//W3C//DTD MathML 3.0//EN"
+                        SYSTEM "mathml3.dtd"                       -->
+
+
+<!-- ============================================================= -->
+<!--                    SET UP W3C XML SCHEMA                      -->
+<!-- ============================================================= -->
+
+
+<!--                    MAKE PREFIX EQUAL "xsi" (same as MathML)   -->
+<!ENTITY % Schema.prefix
+                        "xsi"                                        >
+
+<!--                    SET UP NAMESPACE FOR SCHEMA
+                           (same as MathML)                        -->
+<!ENTITY % Schema.xmlns "http://www.w3.org/2001/XMLSchema-instance"  >
+
+
+<!--                    OVER-RIDE MATHML DTD TO MAKE EXPLICIT NS   -->
+<!--                    MathML sets this up but then lets the
+                        attribute be a CDATA one, not the real
+                        namespace URI                              -->
+<!ENTITY % Schema.xmlns.attrib
+     "xmlns:%Schema.prefix;  CDATA          #FIXED '%Schema.xmlns;'" >
+
+
+<!-- ============================================================= -->
+<!--                    SET UP "mml" AS THE MATH PREFIX            -->
+<!-- ============================================================= -->
+
+
+<!--                    MAKE MATH PREFIX PARAMETER ENTITY HAPPEN   -->
+<!ENTITY % MATHML.prefixed 
+                        "INCLUDE"                                    >
+
+
+<!--                    MAKE PREFIX EQUAL "mml"                    -->
+<!ENTITY % MATHML.prefix "mml"                                       >
+
+
+<!--                    SET UP "pfx"                               -->
+<![%MATHML.prefixed;[
+<!ENTITY % MATHML.pfx   "%MATHML.prefix;:"                           >
+]]>
+
+
+<!--                    USE "pfx" TO SET THE MATH ELEMENT NAME     -->
+<!ENTITY % math.qname   "%MATHML.pfx;math"                           >
+
+
+
+<!-- ============================================================= -->
+<!--                    CALL THE MATHML ENTITIES                   -->
+<!-- ============================================================= -->
+
+
+<!--                    MATHML CHARACTER ENTITIES                  -->
+<!--                    Set the "INCLUDE" or "IGNORE" marked section
+                        switch for the MATHML 3.0 DTD. This switch
+                        determines whether the math processing in
+                        the -%mathml.dtd; module or the
+                        -%xmlspecchars.ent; module in this DTD Suite
+                        will invoke the sets of special characters
+                        that are defined AND INVOKED in the
+                        -%xmlspecchars.ent; module.
+                        A value of "IGNORE" turns off the second
+                        invocation from the MathML DTD.            -->
+<!ENTITY % mathml-charent.module
+                        "IGNORE"                                     >
+
+
+<!--                    MATHML-SPECIFIC CHARACTER ENTITIES         -->
+<!--                    Because the MATHML invocation is canceled
+                        using the parameter entity just defined,
+                        the two external entities below must be
+                        invoked from here, as neither XMLspecchars
+                        nor the MathML DTD will invoke them.       -->
+
+<!--                    New characters defined by MathML           -->
+%ent-mmlextra;
+
+
+<!--                    MathML aliases for characters defined above-->
+%ent-mmlalias;
+
+
+<!-- ============================================================= -->
+<!--                    RESTRICT CONTENT OF ANNOTATION             -->
+<!-- ============================================================= -->
+
+<!--                    MATHML ANNOTATION MODEL                    -->
+<!--                    The MathML 3.0 DTD establishes the content of 
+                        the <mml:annotation-xml> element as any MathML
+                        expression. This is unnecessarily broad, 
+                        causing inconvenience during conversion. 
+                        The model has been restricted to
+                        one or more paragraphs.                    -->
+<!ENTITY % annotation-xml.model
+                        "(p+)"                                       >
+
+
+<!-- ============================================================= -->
+<!--                    MathML 3.0 INVOCATION                      -->
+<!-- ============================================================= -->
+
+%mathml.dtd;
+
+
+<!-- ================== End MATHML Setup Module ================== -->

data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-mathml3-modules1.ent

@@ -0,0 +1,190 @@
+<!-- ============================================================= -->
+<!--  MODULE:    JATS MathML 3.0 Modules                           -->
+<!--  VERSION:   ANSI/NISO JATS Version 1.1 (Z39.96-2015)          -->
+<!--  DATE:      December 2015                                     -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD JATS (Z39.96) JATS MathML 3.0 Modules v1.1 20151215//EN"
+     Delivered as file "JATS-mathml3-modules1.ent"                 -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     JATS DTD Suite                                    -->
+<!--                                                               -->
+<!-- PURPOSE:    To name any modules needed for MathML 3.0 (since  -->
+<!--             NISO JATS V1.0 was MathMl 2.0, and the two are    -->
+<!--             not backwards compatible.                         -->
+<!--                                                               -->
+<!-- CONTAINS:   Modules declarations for MathML 3.0               -->
+<!--                                                               -->
+<!-- TAG SET SPONSOR                                               -->
+<!--             National Center for Biotechnology                 -->
+<!--                Information (NCBI)                             -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             This DTD was created from the JATS DTD Suite.     -->
+<!--             Digital archives and publishers may use the       -->
+<!--             DTD as is for markup of journal literature or     -->
+<!--             related material for archiving and transferring   -->
+<!--             such material between archives or create a        -->
+<!--             custom XML DTD from the Suite for                 -->
+<!--             these purposes.                                   -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the JATS DTD Suite    -->
+<!--                and intend to stay compatible with the suite,  -->
+<!--                then please include the following statement    -->
+<!--                as a comment in all of your DTD modules:       -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the ANSI/NISO Z39.96 Journal Article Tag   -->
+<!--                    Suite (JATS)."                             -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the ANSI/NISO Z39.96 Journal Article -->
+<!--                    Tag Suite (JATS)."                         -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             November 2013                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96   -->
+<!--             Working Group. Mulberry Technologies was          -->
+<!--             supported by National Center for Biotechnology    -->
+<!--             Information (NCBI), a center of the US National   -->
+<!--             Library of Medicine (NLM).                        -->
+<!--                                                               -->
+<!--             The Journal Publishing DTD is built from the      -->
+<!--             Archiving and Interchange DTD Suite.              -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 jats@ncbi.nlm.nih.gov                         -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION/CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+     =============================================================
+     JATS Version 1.1                (DAL/BTU) v1.1  (2015-12-15)
+
+     JATS is a continuing maintenance NISO Standard, which
+     requires voting by the ANSI and NISO memberships to be changed. 
+     JATS 1.1 was approved in late 2015, so the formal public 
+     identifiers were changed in the modules and the catalogs.
+     No model or attribute changes were made at this time. 
+ 
+  4. JATS became version "1.1" and "v1.1 20151215"
+
+     =============================================================
+     JATS Version 1.1d3             (DAL/BTU) v1.1d3  (2015-03-01)
+   
+     The changes in this release are in response to NISO 
+     License and Indicators Recommended Practice.
+
+     NISO JATS is a continuing maintenance NISO Standard, which 
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1d3 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+     
+     This draft DTD represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee.
+
+  3. JATS became version "1.1d3" and "v1.1d3 20150301"
+  
+     =============================================================
+     JATS Version 1.1d2              (DAL/BTU) v1.1d2 (2014-09-30)
+   
+     NISO JATS is a continuing maintenance NISO Standard, which 
+     requires voting by the NISO membership to be changed. This
+     Committee Draft 1.1d2 will be sent to the NISO voting
+     membership, to become (if approved) NISO JATS 1.1.
+     
+     This catalog represents an interim version of the
+     non-normative JATS DTD Suite, as an indication to JATS users
+     the decisions that have been made by the JATS Standing
+     Committee.
+
+   2. JATS became version "1.1d2" and "v1.1d2 20140930//EN"
+  
+     =============================================================
+     NISO JATS Version 1.0             (DAL/BTU) v1.0 (2012-xx-xx)
+   
+     ANSI/NISO Z39.96-2012 (Version 1.0) 
+
+     Details concerning ANSI/NISO Z39.96-20125 concerning 
+     ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs, 
+     RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.0/
+   
+  1. OASIS TABLE NAMESPACE MODIFICATIONS - Added a new module
+     that sets up the namespace URI and namespace prefix for
+     the OASIS tables models.
+                                                                   -->
+
+<!-- ============================================================= -->
+<!-- Details concerning 
+     ANSI/NISO Z39.96-2015 JATS-based DTDs, XSDs, 
+     RNGs and supporting documentation are available at
+           http://jats.nlm.nih.gov/1.1/                            -->
+
+<!-- ============================================================= -->
+<!--                     MATHML 3.0 MODULES (Invoked for V1d1)     -->
+<!-- ============================================================= -->
+
+
+<!--                    MATHML 3.0 QUALIFIED NAMES                 -->
+<!ENTITY % mathml-qname.mod
+                        PUBLIC
+"-//W3C//ENTITIES MathML 3.0 Qualified Names 1.0//EN"
+"mathml3-qname1.mod"                                                 >
+
+
+<!--                    MATHML 3.0 DTD                             -->
+<!ENTITY % mathml.dtd   PUBLIC
+"-//W3C//DTD MathML 3.0//EN" 
+"mathml3.dtd"                                                        >
+
+
+<!--                    MATHML 3.0 EXTRA ENTITIES                  -->
+<!ENTITY % ent-mmlextra
+                        PUBLIC
+"-//W3C//ENTITIES Extra for MathML 3.0//EN" 
+"mathml/mmlextra.ent"                                                >
+
+
+<!--                    MATHML 3.0 ALIASES                         -->
+<!ENTITY % ent-mmlalias
+                        PUBLIC
+"-//W3C//ENTITIES Aliases for MathML 3.0//EN" 
+"mathml/mmlalias.ent"                                                >
+
+
+<!-- =================== End MathML 3.0 Modules ================== -->