xml_jats_resolver 0.0.1

data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isopub.ent

@@ -0,0 +1 @@
+
     File isopub.ent produced by the XSL script mmldtd.xsl
     from input data in unicode.xml.
     Please report any errors to 
     David Carlisle <davidc@nag.co.uk>.
     The numeric character values assigned to each entity
     (should) match either official Unicode assignments
     or assignments provisionally allocated by the
     Unicode Consortium based on the characters in the `STIX'
     propsal for mathematics. Note that these assignments
     have not been ratified by the corresponding ISO
     committee and thus should be considered liable to
     change.
     Entity names in this file are derived from files carrying the
     following notice:
     (C) International Organization for Standardization 1986
     Permission to copy in any form is granted for use with
     conforming SGML systems and applications as defined in
     ISO 8879, provided this notice is included in all copies.
-->

data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isotech.ent

@@ -0,0 +1 @@
+
     File isotech.ent produced by the XSL script mmldtd.xsl
     from input data in unicode.xml.
     Please report any errors to 
     David Carlisle <davidc@nag.co.uk>.
     The numeric character values assigned to each entity
     (should) match either official Unicode assignments
     or assignments provisionally allocated by the
     Unicode Consortium based on the characters in the `STIX'
     propsal for mathematics. Note that these assignments
     have not been ratified by the corresponding ISO
     committee and thus should be considered liable to
     change.
     Entity names in this file are derived from files carrying the
     following notice:
     (C) International Organization for Standardization 1991
     Permission to copy in any form is granted for use with
     conforming SGML systems and applications as defined in
     ISO 8879, provided this notice is included in all copies.
-->

data/lib/dtd/archiving_dtd/1.1/dtd/xmlspecchars.ent

@@ -0,0 +1,274 @@
+<!-- ============================================================= -->
+<!--  MODULE:    XML Special Characters Module                     -->
+<!--  VERSION:   1.0                                               -->
+<!--  DATE:      December 2002                                     -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD Archiving Suite XML Special Characters Module v1.0 20021201//EN"
+     Delivered as file "xmlspecchars.ent"                          -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    External Parameter Entities for calling in the    -->
+<!--             special character entities                        -->
+<!--                                                               -->
+<!-- CONTAINS:   1) Calls to external entity sets                  -->
+<!--                                                               -->
+<!-- MODULES REQUIRED:                                             -->
+<!--             The standard ISO special character entity sets    -->
+<!--             (see below)                                       -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital archives and publishers who wish to       -->
+<!--             create a custom XML DTD for original markup of    -->
+<!--             journal literature, books, and related material,  -->
+<!--             or for archiving and transferring such material   -->
+<!--             between archives.                                 -->
+<!--                                                               -->
+<!--             This DTD is in the public domain. An organization -->
+<!--             that wishes to create its own DTD from the suite  -->
+<!--             may do so without permission from NLM.            -->
+<!--                                                               -->
+<!--             The suite has been set up to be extended using a  -->
+<!--             new DTD file and a new DTD-specific customization -->
+<!--             module to redefine the many Parameter Entities.   -->
+<!--             Do not modify the suite directly or redistribute  -->
+<!--             modified versions of the suite.                   -->
+<!--                                                               -->
+<!--             In the interest of maintaining consistency and    -->
+<!--             clarity for potential users, NLM requests:        -->
+<!--                                                               -->
+<!--             1. If you create a DTD from the Archiving and     -->
+<!--                Interchange DTD Suite and intend to stay       -->
+<!--                compatible with the suite, then please include -->
+<!--                the following statement as a comment in all of -->
+<!--                your DTD modules:                              -->
+<!--                   "Created from, and fully compatible with,   -->
+<!--                    the Archiving and Interchange DTD Suite."  -->
+<!--                                                               -->
+<!--             2. If you alter one or more modules of the suite, -->
+<!--                then please rename your version and all its    -->
+<!--                modules to avoid any confusion with the        -->
+<!--                original suite. Also, please include the       -->
+<!--                following statement as a comment in all your   -->
+<!--                DTD modules:                                   -->
+<!--                   "Based in part on, but not fully compatible -->
+<!--                    with, the Archiving and Interchange DTD    --> 
+<!--                    Suite."                                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             the DTD suite should be sent in email to:         -->
+<!--                 archive-dtd@ncbi.nlm.nih.gov                  -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             December 2002                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             Bruce Rosenblum (Inera Inc.)                      -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  --> 
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Bruce Rosenblum's collaboration with other DTD    -->
+<!--             authors in completing Version 1.0. The Andrew W.  --> 
+<!--             Mellon Foundation provided support for these      --> 
+<!--             important contributions.                          -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION\CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+     =============================================================
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+
+                                                                   -->
+
+
+<!-- ============================================================= -->
+<!--                    ISO STANDARD SPECIAL CHARACTER SETS DEFINED-->
+<!-- ============================================================= -->
+
+
+<!--                    ISO STANDARD ADDED LATIN 1                 -->
+<!ENTITY % ISOlat1 PUBLIC
+"-//W3C//ENTITIES Added Latin 1 for MathML 2.0//EN" 
+"xmlchars/isolat1.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED LATIN 2                 -->
+<!ENTITY % ISOlat2 PUBLIC
+"-//W3C//ENTITIES Added Latin 2 for MathML 2.0//EN" 
+"xmlchars/isolat2.ent"                                               >
+
+
+<!--                    ISO BOX AND LINE DRAWING                   -->
+<!ENTITY % ISObox       PUBLIC 
+"-//W3C//ENTITIES Box and Line Drawing for MathML 2.0//EN"
+"xmlchars/isobox.ent"                                               >
+
+
+<!--                    ISO STANDARD DIACRITICAL MARKS             -->
+<!ENTITY % ISOdia PUBLIC
+"-//W3C//ENTITIES Diacritical Marks for MathML 2.0//EN" 
+"xmlchars/isodia.ent"                                                >
+
+
+<!--                    ISO STANDARD NUMERIC AND SPECIAL GRAPHIC   -->
+<!ENTITY % ISOnum PUBLIC
+"-//W3C//ENTITIES Numeric and Special Graphic for MathML 2.0//EN" 
+"xmlchars/isonum.ent"                                                >
+
+
+<!--                    ISO STANDARD PUBLISHING                    -->
+<!ENTITY % ISOpub PUBLIC
+"-//W3C//ENTITIES Publishing for MathML 2.0//EN" 
+"xmlchars/isopub.ent"                                                >
+
+
+<!--                    ISO STANDARD GENERAL TECHNICAL             -->
+<!ENTITY % ISOtech PUBLIC
+"-//W3C//ENTITIES General Technical for MathML 2.0//EN" 
+"xmlchars/isotech.ent"                                               >
+
+
+<!--                    ISO STANDARD GREEK LETTERS                 -->
+<!ENTITY % ISOgrk1 PUBLIC
+"-//W3C//ENTITIES Greek Letters//EN"
+"xmlchars/isogrk1.ent"                                               >
+
+
+<!--                    ISO STANDARD MONOTONIKO GREEK              -->
+<!ENTITY % ISOgrk2 PUBLIC
+"-//W3C//ENTITIES Monotoniko Greek//EN"
+"xmlchars/isogrk2.ent"                                               >
+
+
+<!--                    ISO STANDARD GREEK SYMBOLS                 -->
+<!ENTITY % ISOgrk3 PUBLIC
+"-//W3C//ENTITIES Greek Symbols for MathML 2.0//EN"
+"xmlchars/isogrk3.ent"                                               >
+
+
+<!--                    ISO STANDARD ALTERNATIVE GREEK SYMBOLS     -->
+<!ENTITY % ISOgrk4 PUBLIC
+"-//W3C//ENTITIES Alternative Greek Symbols//EN"
+"xmlchars/isogrk4.ent"                                               >
+
+
+<!--                    ISO STANDARD RUSSIAN CYRILLIC              -->
+<!ENTITY % ISOcyr1 PUBLIC 
+"-//W3C//ENTITIES Russian Cyrillic for MathML 2.0//EN" 
+"xmlchars/isocyr1.ent"                                               >
+
+
+<!--                    ISO STANDARD NON-RUSSIAN CYRILLIC          -->
+<!ENTITY % ISOcyr2 PUBLIC
+"-//W3C//ENTITIES Non-Russian Cyrillic for MathML 2.0//EN" 
+"xmlchars/isocyr2.ent"                                               >
+
+
+<!--                    ISO STANDARD MATH ALPHABETS (SCRIPT)       -->
+<!ENTITY % ISOmscr PUBLIC
+"-//W3C//ENTITIES Math Alphabets: Script for MathML 2.0//EN" 
+"xmlchars/isomscr.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED MATH SYMBOLS 
+                           (ARROW RELATIONS)                       -->
+<!ENTITY % ISOamsa PUBLIC
+"-//W3C//ENTITIES Added Math Symbols: Arrow Relations for MathML 2.0//EN" 
+"xmlchars/isoamsa.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED MATH SYMBOLS 
+                           (BINARY OPERATORS)                      -->
+<!ENTITY % ISOamsb PUBLIC 
+"-//W3C//ENTITIES Added Math Symbols: Binary Operators for MathML 2.0//EN" 
+"xmlchars/isoamsb.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED MATH SYMBOLS 
+                           (DELIMITERS)                            -->
+<!ENTITY % ISOamsc PUBLIC 
+"-//W3C//ENTITIES Added Math Symbols: Delimiters for MathML 2.0//EN" 
+"xmlchars/isoamsc.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED MATH SYMBOLS 
+                           (NEGATED RELATIONS)                     -->
+<!ENTITY % ISOamsn PUBLIC 
+"-//W3C//ENTITIES Added Math Symbols: Negated Relations for MathML 2.0//EN"
+"xmlchars/isoamsn.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED MATH SYMBOLS (ORDINARY) -->
+<!ENTITY % ISOamso PUBLIC 
+"-//W3C//ENTITIES Added Math Symbols: Ordinary for MathML 2.0//EN" 
+"xmlchars/isoamso.ent"                                               >
+
+
+<!--                    ISO STANDARD ADDED MATH SYMBOLS 
+                           (RELATIONS)                             -->
+<!ENTITY % ISOamsr PUBLIC 
+"-//W3C//ENTITIES Added Math Symbols: Relations for MathML 2.0//EN" 
+"xmlchars/isoamsr.ent"                                               >
+
+
+<!--                    ISO STANDARD MATH ALPHABETS (FRAKTUR)      -->
+<!ENTITY % ISOmfrk PUBLIC
+"-//W3C//ENTITIES Math Alphabets: Fraktur for MathML 2.0//EN" 
+"xmlchars/isomfrk.ent"                                               >
+
+
+<!--                    ISO STANDARD MATH ALPHABETS (OPEN FACE)    -->
+<!ENTITY % ISOmopf PUBLIC
+"-//W3C//ENTITIES Math Alphabets: Open Face for MathML 2.0//EN" 
+"xmlchars/isomopf.ent"                                               >
+
+
+<!-- ============================================================= -->
+<!--                    ISO SPECIAL CHARACTER SETS INVOKED         -->
+<!-- ============================================================= -->
+
+
+%ISOlat1;
+%ISOlat2;
+%ISObox;
+%ISOdia;
+%ISOnum;
+%ISOpub;
+%ISOtech;
+%ISOgrk1;
+%ISOgrk2;
+%ISOgrk3;
+%ISOgrk4;
+%ISOcyr1;
+%ISOcyr2;
+%ISOamsa;
+%ISOamsb;
+%ISOamsc;
+%ISOamsn;
+%ISOamso;
+%ISOamsr;
+%ISOmscr;
+%ISOmfrk; 
+%ISOmopf;
+
+
+<!--                    Custom special characters are declared 
+                        in a separate module %chars.ent;           -->
+
+
+<!-- ============ End of XML Special Characters Module =========== -->

data/lib/dtd/archiving_dtd/2.0/dtd/Readme.txt

@@ -0,0 +1,225 @@
+README.TXT                           20 December, 2004
+
+This README names the modules delivered as Version 2.0 
+of the NLM Journal Archiving DTD and Version 2.0
+and the 2.0 version of the NLM Archiving and Interchange 
+DTD Suite.
+
+A file named GreenChangesV2.html describes the major
+changes made between Version 1.1 and Version 2.0. These
+changes are fully backwards compatible for XML documents
+(document instances) That is, all documents that were valid 
+to Version 1.0 or 1.1 will be valid to Version 2.0. The 
+DTDs are not fully backwards compatible for all  
+DTD-customizations. That is, customizations made to 
+Versions 1.0 and 1.1 will simply not "work" with Version 2.0.
+This is largely because the modularization for customizing
+has been revised to make small-scale customization easier,
+and the customization technique is easier and more powerful
+but different. As another example, some Parameter Entity 
+names have been changed.
+
+
+The rest of this README contains notes concerning:
+  1.0 Catalog File
+  2.0 Modules Specific to the NLM Journal Archiving DTD
+  3.0 Critical Base Modules
+  4.0 Element Class Modules
+  5.0 Math Modules 
+  6.0 Table Modules
+  7.0 Notations and Special Characters
+  8.0 Sample files for testing
+
+
+------------------------------------------------------
+1.0 Catalog File
+
+catalog.ent - OASIS SOCAT catalog of the fpi and file names
+              Not part of the DTD Suite proper, but may be
+              used to implement a system using the suite.
+
+
+------------------------------------------------------
+2.0 Modules Specific to the NLM Journal Archiving DTD
+
+In versions 1.0 and 1.1 of the NLM Journal Archiving DTD,
+all class definitions, mix definitions, and DTD-over-rides
+were done in a single module, named archivecustomize.ent.
+This module has been replaced by several smaller, single- 
+purpose modules, to make it obvious both what has been
+over-ridden and what can be over-ridden using the recommended
+customization methods and modules.
+
+archivearticle.dtd          
+             - Main DTD for NLM Journal Archiving DTD,
+               this is the DOCTYPE that covers a journal
+               article and various other non-article
+               journal content such as book and product 
+               reviews. This DTD invokes almost all the 
+               modules in the NLM Archiving and Interchange
+               DTD Suite.
+
+archivecustom-modules.ent 
+             - Names all new modules created specifically
+               for this DTD (therefore not part of the
+               base DTD Suite)
+               (Must be called as the second module in 
+               the DTD, just before the Suite Module
+               of Modules %modules.ent;)
+
+archivecustom-classes.ent
+             - the DTD-specific class definitions for the 
+               this DTD. Used to over-ride the Suite
+               default classes. 
+               Declared in %archivecustom-modules.ent;
+               Must be invoked before the default classes
+               module.
+
+archivecustom-mixes.ent
+             - the DTD-specific mix definitions for the 
+               this DTD. Used to over-ride the Suite
+               default mixes. 
+               Declared in %archivecustom-modules.ent;
+               Must be invoked before the default mixes
+               module.
+
+archivecustom-models.ent
+             - the DTD-specific content model definitions 
+               for the this DTD. Used to over-ride the Suite
+               default models. 
+               Declared in %archivecustom-modules.ent;
+               Must be invoked before the all the DTD Suite
+               modules since it is used to over0ride them.
+            
+               There are two types of such over-rides. Those 
+               that replace a complete content model are
+               named with a suffix "-model". Those that are 
+               OR-groups of elements, intended to be mixed 
+               with #PCDATA inside a particular model are 
+               named with an "-elements" suffix.
+
+------------------------------------------------------
+3.0 Critical Base Modules
+
+modules.ent      - Names all the modules in the NLM 
+                   Archiving and Interchange DTD Suite
+                   (Must be called as the second module
+                   by any DTD, after the DTD-specific module
+                   of modules and before all other modules). 
+                   NOTE: May name modules (such as the 
+                   OASIS-Exchange module) that are not called 
+                   by a particular DTD.
+
+common.ent       - Defines all elements, attributes, entities
+                   used by more than one module
+                   (Called after all customization and module-of-
+                   module modules but before all the class
+                   modules.)
+
+These modules need to be invoked before all other modules 
+in a DTD. Other modules can usually be invoked in any order.
+
+
+------------------------------------------------------
+4.0 Element Class Modules (define elements, attributes for one class)
+
+articlemeta.ent  - Article-level metadata elements 
+backmatter.ent   - Article-level back matter elements
+display.ent      - Display elements such as Table, Figure, Graphic
+format.ent       - Format-related elements such as Bold
+journalmeta.ent  - Journal-level metadata elements
+link.ent         - Linking elements such as X(Cross)-Reference
+list.ent         - List elements
+math.ent         - NLM-defined math elements such as Display Equation
+para.ent         - Paragraph-level elements such as Paragraph and
+                      Block Quote
+phrase.ent       - Phrase-level content-related elements
+references.ent   - Bibliographic reference list and the elements
+                      that can be used inside a citation
+section.ent      - Section-level elements
+
+
+------------------------------------------------------
+5.0 Math Modules (Define MathML tagging, used in math.ent)
+
+These modules are defined in the suite and should be invoked
+from the DTD if MathML tagging is desired.
+
+mathml2.dtd
+mathmlsetup.ent
+
+And inside the mathml subdirectory:
+  mathml2-qname-1.mod
+  mmlalias.ent
+  mmlextra.ent
+
+ 
+------------------------------------------------------
+6.0 Table Modules (Define XHTML and OASIS Exchange Table Models))
+
+These modules are defined in the suite and should be invoked
+from the DTD if table tagging is desired.
+
+Using either table model requires two modules: one to set up the
+Parameter Entities necessary to use the model, and the second to
+define the model itself (as defined publicly).
+
+XHTML Table Model
+  XHTMLtablesetup.ent
+  htmltable.dtd
+
+NLM Version (with namespaces) of OASIS Exchange Table Model
+  oasis-tablesetup.ent
+  oasis-exchange.ent
+
+
+------------------------------------------------------
+7.0 Notations and Special Characters
+
+notat.ent        - Names all Notations used
+xmlspecchars.ent - Names all the standard special character
+                      entity sets to be used by the DTD. The
+                      MathML characters sets were used,
+                      unchanged
+chars.ent        - Definitions of NLM-specific and custom
+                      special characters (as general entities
+                      defined as hexadecimal or decimal character
+                      entities - Unicode numbers or using the
+                      <private-char> element.) 
+
+All the MathML special character entity sets
+(inside the xmlchars directory)
+  isoamsa.ent
+  isoamsb.ent
+  isoamsc.ent
+  isoamsn.ent
+  isoamso.ent
+  isoamsr.ent
+  isobox.ent
+  isocyr1.ent
+  isocyr2.ent
+  isodia.ent
+  isogrk1.ent
+  isogrk2.ent
+  isogrk3.ent
+  isogrk4.ent
+  isolat1.ent
+  isolat2.ent
+  isomfrk.ent
+  isomopf.ent
+  isomscr.ent
+  isonum.ent
+  isopub.ent
+  isotech.ent
+ 
+ 
+------------------------------------------------------
+8.0 Sample files for testing
+
+samplesmall-green.xml - Minimal Archival DTD document used to 
+                        test the DTD
+
+------------ document end ----------------------------
+
+
+