xml_jats_resolver 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1312) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +6 -0
  3. data/CHANGELOG.md +3 -0
  4. data/Gemfile +8 -0
  5. data/LICENSE.md +25 -0
  6. data/README.md +3 -0
  7. data/Rakefile +10 -0
  8. data/lib/dtd/archiving_dtd/1.0/dtd/XHTMLtablesetup.ent +247 -0
  9. data/lib/dtd/archiving_dtd/1.0/dtd/archivearticle.dtd +815 -0
  10. data/lib/dtd/archiving_dtd/1.0/dtd/archivecustomize.ent +583 -0
  11. data/lib/dtd/archiving_dtd/1.0/dtd/articlemeta.ent +1431 -0
  12. data/lib/dtd/archiving_dtd/1.0/dtd/backmatter.ent +216 -0
  13. data/lib/dtd/archiving_dtd/1.0/dtd/catalog.ent +76 -0
  14. data/lib/dtd/archiving_dtd/1.0/dtd/chars.ent +333 -0
  15. data/lib/dtd/archiving_dtd/1.0/dtd/checksum.md5 +83 -0
  16. data/lib/dtd/archiving_dtd/1.0/dtd/common.ent +1609 -0
  17. data/lib/dtd/archiving_dtd/1.0/dtd/display.ent +988 -0
  18. data/lib/dtd/archiving_dtd/1.0/dtd/format.ent +403 -0
  19. data/lib/dtd/archiving_dtd/1.0/dtd/htmltable.dtd +334 -0
  20. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsa.ent +173 -0
  21. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsb.ent +146 -0
  22. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsc.ent +49 -0
  23. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsn.ent +117 -0
  24. data/lib/dtd/archiving_dtd/1.0/dtd/isoamso.ent +77 -0
  25. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsr.ent +205 -0
  26. data/lib/dtd/archiving_dtd/1.0/dtd/isobox.ent +67 -0
  27. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr1.ent +94 -0
  28. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr2.ent +53 -0
  29. data/lib/dtd/archiving_dtd/1.0/dtd/isodia.ent +41 -0
  30. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk1.ent +1 -1
  31. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk2.ent +1 -1
  32. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk3.ent +70 -0
  33. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk4.ent +1 -1
  34. data/lib/dtd/archiving_dtd/1.0/dtd/isolat1.ent +89 -0
  35. data/lib/dtd/archiving_dtd/1.0/dtd/isolat2.ent +148 -0
  36. data/lib/dtd/archiving_dtd/1.0/dtd/isomfrk.ent +79 -0
  37. data/lib/dtd/archiving_dtd/1.0/dtd/isomopf.ent +53 -0
  38. data/lib/dtd/archiving_dtd/1.0/dtd/isomscr.ent +79 -0
  39. data/lib/dtd/archiving_dtd/1.0/dtd/isonum.ent +103 -0
  40. data/lib/dtd/archiving_dtd/1.0/dtd/isopub.ent +110 -0
  41. data/lib/dtd/archiving_dtd/1.0/dtd/isotech.ent +183 -0
  42. data/lib/dtd/archiving_dtd/1.0/dtd/journalmeta.ent +269 -0
  43. data/lib/dtd/archiving_dtd/1.0/dtd/link.ent +417 -0
  44. data/lib/dtd/archiving_dtd/1.0/dtd/list.ent +361 -0
  45. data/lib/dtd/archiving_dtd/1.0/dtd/math.ent +220 -0
  46. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mathml2-qname-1.mod +275 -0
  47. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlalias.ent +564 -0
  48. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlextra.ent +128 -0
  49. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2-qname-1.mod +275 -0
  50. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2.dtd +1960 -0
  51. data/lib/dtd/archiving_dtd/1.0/dtd/mathmlsetup.ent +141 -0
  52. data/lib/dtd/archiving_dtd/1.0/dtd/mmlalias.ent +564 -0
  53. data/lib/dtd/archiving_dtd/1.0/dtd/mmlextra.ent +128 -0
  54. data/lib/dtd/archiving_dtd/1.0/dtd/modules.ent +344 -0
  55. data/lib/dtd/archiving_dtd/1.0/dtd/notat.ent +147 -0
  56. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-exchange.ent +354 -0
  57. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-tablesetup.ent +258 -0
  58. data/lib/dtd/archiving_dtd/1.0/dtd/para.ent +320 -0
  59. data/lib/dtd/archiving_dtd/1.0/dtd/phrase.ent +213 -0
  60. data/lib/dtd/archiving_dtd/1.0/dtd/readme.txt +247 -0
  61. data/lib/dtd/archiving_dtd/1.0/dtd/references.ent +559 -0
  62. data/lib/dtd/archiving_dtd/1.0/dtd/sampleminimal.xml +5 -0
  63. data/lib/dtd/archiving_dtd/1.0/dtd/samplesmall.xml +84 -0
  64. data/lib/dtd/archiving_dtd/1.0/dtd/section.ent +205 -0
  65. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsa.ent +173 -0
  66. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsb.ent +146 -0
  67. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsc.ent +49 -0
  68. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsn.ent +117 -0
  69. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamso.ent +77 -0
  70. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsr.ent +205 -0
  71. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isobox.ent +67 -0
  72. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr1.ent +94 -0
  73. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr2.ent +53 -0
  74. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isodia.ent +41 -0
  75. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk1.ent +1 -1
  76. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk2.ent +1 -1
  77. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk3.ent +70 -0
  78. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk4.ent +1 -1
  79. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat1.ent +89 -0
  80. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat2.ent +148 -0
  81. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomfrk.ent +79 -0
  82. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomopf.ent +53 -0
  83. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomscr.ent +79 -0
  84. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isonum.ent +103 -0
  85. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isopub.ent +110 -0
  86. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isotech.ent +183 -0
  87. data/lib/dtd/archiving_dtd/1.0/dtd/xmlspecchars.ent +274 -0
  88. data/lib/dtd/archiving_dtd/1.1/dtd/XHTMLtablesetup.ent +289 -0
  89. data/lib/dtd/archiving_dtd/1.1/dtd/archivearticle.dtd +819 -0
  90. data/lib/dtd/archiving_dtd/1.1/dtd/archivecustomize.ent +597 -0
  91. data/lib/dtd/archiving_dtd/1.1/dtd/articlemeta.ent +1464 -0
  92. data/lib/dtd/archiving_dtd/1.1/dtd/backmatter.ent +216 -0
  93. data/lib/dtd/archiving_dtd/1.1/dtd/catalog.ent +76 -0
  94. data/lib/dtd/archiving_dtd/1.1/dtd/chars.ent +340 -0
  95. data/lib/dtd/archiving_dtd/1.1/dtd/common.ent +1674 -0
  96. data/lib/dtd/archiving_dtd/1.1/dtd/display.ent +1334 -0
  97. data/lib/dtd/archiving_dtd/1.1/dtd/format.ent +401 -0
  98. data/lib/dtd/archiving_dtd/1.1/dtd/htmltable.dtd +334 -0
  99. data/lib/dtd/archiving_dtd/1.1/dtd/journalmeta.ent +283 -0
  100. data/lib/dtd/archiving_dtd/1.1/dtd/link.ent +475 -0
  101. data/lib/dtd/archiving_dtd/1.1/dtd/list.ent +416 -0
  102. data/lib/dtd/archiving_dtd/1.1/dtd/math.ent +288 -0
  103. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mathml2-qname-1.mod +1 -3
  104. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlalias.ent +1 -1
  105. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlextra.ent +1 -1
  106. data/lib/dtd/archiving_dtd/1.1/dtd/mathml2.dtd +1960 -0
  107. data/lib/dtd/archiving_dtd/1.1/dtd/mathmlsetup.ent +171 -0
  108. data/lib/dtd/archiving_dtd/1.1/dtd/modules.ent +349 -0
  109. data/lib/dtd/archiving_dtd/1.1/dtd/notat.ent +147 -0
  110. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-exchange.ent +354 -0
  111. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-tablesetup.ent +298 -0
  112. data/lib/dtd/archiving_dtd/1.1/dtd/para.ent +368 -0
  113. data/lib/dtd/archiving_dtd/1.1/dtd/phrase.ent +244 -0
  114. data/lib/dtd/archiving_dtd/1.1/dtd/references.ent +560 -0
  115. data/lib/dtd/archiving_dtd/1.1/dtd/section.ent +202 -0
  116. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsa.ent +1 -1
  117. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsb.ent +1 -1
  118. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsc.ent +1 -1
  119. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsn.ent +1 -1
  120. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamso.ent +1 -1
  121. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsr.ent +1 -1
  122. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isobox.ent +1 -1
  123. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr1.ent +1 -1
  124. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr2.ent +1 -1
  125. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isodia.ent +1 -1
  126. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk1.ent +1 -1
  127. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk2.ent +1 -1
  128. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk3.ent +1 -1
  129. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk4.ent +1 -1
  130. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat1.ent +1 -1
  131. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat2.ent +1 -1
  132. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomfrk.ent +1 -1
  133. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomopf.ent +1 -1
  134. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomscr.ent +1 -1
  135. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isonum.ent +1 -1
  136. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isopub.ent +1 -1
  137. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isotech.ent +1 -1
  138. data/lib/dtd/archiving_dtd/1.1/dtd/xmlspecchars.ent +274 -0
  139. data/lib/dtd/archiving_dtd/2.0/dtd/Readme.txt +225 -0
  140. data/lib/dtd/archiving_dtd/2.0/dtd/XHTMLtablesetup.ent +309 -0
  141. data/lib/dtd/archiving_dtd/2.0/dtd/archivearticle.dtd +952 -0
  142. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-classes.ent +157 -0
  143. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-mixes.ent +306 -0
  144. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-models.ent +756 -0
  145. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-modules.ent +116 -0
  146. data/lib/dtd/archiving_dtd/2.0/dtd/articlemeta.ent +1811 -0
  147. data/lib/dtd/archiving_dtd/2.0/dtd/backmatter.ent +277 -0
  148. data/lib/dtd/archiving_dtd/2.0/dtd/catalog.ent +115 -0
  149. data/lib/dtd/archiving_dtd/2.0/dtd/chars.ent +359 -0
  150. data/lib/dtd/archiving_dtd/2.0/dtd/common.ent +2790 -0
  151. data/lib/dtd/archiving_dtd/2.0/dtd/default-classes.ent +704 -0
  152. data/lib/dtd/archiving_dtd/2.0/dtd/default-mixes.ent +357 -0
  153. data/lib/dtd/archiving_dtd/2.0/dtd/display.ent +1468 -0
  154. data/lib/dtd/archiving_dtd/2.0/dtd/format.ent +412 -0
  155. data/lib/dtd/archiving_dtd/2.0/dtd/htmltable.dtd +334 -0
  156. data/lib/dtd/archiving_dtd/2.0/dtd/journalmeta.ent +341 -0
  157. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-classes.ent +200 -0
  158. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-mixes.ent +207 -0
  159. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-models.ent +859 -0
  160. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-modules.ent +125 -0
  161. data/lib/dtd/archiving_dtd/2.0/dtd/journalpublishing.dtd +955 -0
  162. data/lib/dtd/archiving_dtd/2.0/dtd/link.ent +510 -0
  163. data/lib/dtd/archiving_dtd/2.0/dtd/list.ent +465 -0
  164. data/lib/dtd/archiving_dtd/2.0/dtd/math.ent +329 -0
  165. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mathml2-qname-1.mod +1 -3
  166. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlalias.ent +1 -1
  167. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlextra.ent +1 -1
  168. data/lib/dtd/archiving_dtd/2.0/dtd/mathml2.dtd +1960 -0
  169. data/lib/dtd/archiving_dtd/2.0/dtd/mathmlsetup.ent +191 -0
  170. data/lib/dtd/archiving_dtd/2.0/dtd/modules.ent +417 -0
  171. data/lib/dtd/archiving_dtd/2.0/dtd/nlmcitation.ent +124 -0
  172. data/lib/dtd/archiving_dtd/2.0/dtd/notat.ent +172 -0
  173. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-exchange.ent +354 -0
  174. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-tablesetup.ent +308 -0
  175. data/lib/dtd/archiving_dtd/2.0/dtd/para.ent +420 -0
  176. data/lib/dtd/archiving_dtd/2.0/dtd/phrase.ent +278 -0
  177. data/lib/dtd/archiving_dtd/2.0/dtd/references.ent +726 -0
  178. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-green.xml +1 -0
  179. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-pub.xml +1 -0
  180. data/lib/dtd/archiving_dtd/2.0/dtd/section.ent +220 -0
  181. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsa.ent +1 -1
  182. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsb.ent +1 -1
  183. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsc.ent +1 -1
  184. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsn.ent +1 -1
  185. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamso.ent +1 -1
  186. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsr.ent +1 -1
  187. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isobox.ent +1 -1
  188. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr1.ent +1 -1
  189. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr2.ent +1 -1
  190. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isodia.ent +1 -1
  191. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk1.ent +1 -1
  192. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk2.ent +1 -1
  193. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk3.ent +1 -1
  194. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk4.ent +1 -1
  195. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat1.ent +1 -1
  196. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat2.ent +1 -1
  197. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomfrk.ent +1 -1
  198. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomopf.ent +1 -1
  199. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomscr.ent +1 -1
  200. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isonum.ent +97 -0
  201. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isopub.ent +1 -1
  202. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isotech.ent +1 -1
  203. data/lib/dtd/archiving_dtd/2.0/dtd/xmlspecchars.ent +290 -0
  204. data/lib/dtd/archiving_dtd/2.1/dtd/ArchiveReadme.txt +283 -0
  205. data/lib/dtd/archiving_dtd/2.1/dtd/XHTMLtablesetup.ent +320 -0
  206. data/lib/dtd/archiving_dtd/2.1/dtd/archivearticle.dtd +981 -0
  207. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-classes.ent +173 -0
  208. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-mixes.ent +317 -0
  209. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-models.ent +777 -0
  210. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-modules.ent +125 -0
  211. data/lib/dtd/archiving_dtd/2.1/dtd/articlemeta.ent +1816 -0
  212. data/lib/dtd/archiving_dtd/2.1/dtd/backmatter.ent +288 -0
  213. data/lib/dtd/archiving_dtd/2.1/dtd/catalog-v2.xml +577 -0
  214. data/lib/dtd/archiving_dtd/2.1/dtd/catalog.ent +179 -0
  215. data/lib/dtd/archiving_dtd/2.1/dtd/chars.ent +359 -0
  216. data/lib/dtd/archiving_dtd/2.1/dtd/common.ent +2991 -0
  217. data/lib/dtd/archiving_dtd/2.1/dtd/default-classes.ent +738 -0
  218. data/lib/dtd/archiving_dtd/2.1/dtd/default-mixes.ent +368 -0
  219. data/lib/dtd/archiving_dtd/2.1/dtd/display.ent +1480 -0
  220. data/lib/dtd/archiving_dtd/2.1/dtd/format.ent +412 -0
  221. data/lib/dtd/archiving_dtd/2.1/dtd/htmltable.dtd +334 -0
  222. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isobox.ent +61 -0
  223. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr1.ent +88 -0
  224. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr2.ent +47 -0
  225. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isodia.ent +35 -0
  226. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat1.ent +83 -0
  227. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat2.ent +142 -0
  228. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isonum.ent +97 -0
  229. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isopub.ent +105 -0
  230. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsa.ent +167 -0
  231. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsb.ent +143 -0
  232. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsc.ent +43 -0
  233. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsn.ent +114 -0
  234. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamso.ent +73 -0
  235. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsr.ent +204 -0
  236. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isogrk3.ent +64 -0
  237. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomfrk.ent +75 -0
  238. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomopf.ent +49 -0
  239. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomscr.ent +75 -0
  240. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isotech.ent +182 -0
  241. data/lib/dtd/archiving_dtd/2.1/dtd/journalmeta.ent +328 -0
  242. data/lib/dtd/archiving_dtd/2.1/dtd/link.ent +521 -0
  243. data/lib/dtd/archiving_dtd/2.1/dtd/list.ent +496 -0
  244. data/lib/dtd/archiving_dtd/2.1/dtd/math.ent +328 -0
  245. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlalias.ent +564 -0
  246. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlextra.ent +122 -0
  247. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2-qname-1.mod +286 -0
  248. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2.dtd +2206 -0
  249. data/lib/dtd/archiving_dtd/2.1/dtd/mathmlsetup.ent +280 -0
  250. data/lib/dtd/archiving_dtd/2.1/dtd/modules.ent +438 -0
  251. data/lib/dtd/archiving_dtd/2.1/dtd/notat.ent +172 -0
  252. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-exchange.ent +354 -0
  253. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-tablesetup.ent +308 -0
  254. data/lib/dtd/archiving_dtd/2.1/dtd/para.ent +445 -0
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  1261. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-journalmeta1.ent +454 -0
  1262. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-link1.ent +416 -0
  1263. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-list1.ent +494 -0
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  1311. data/xml_jats_resolver.gemspec +24 -0
  1312. metadata +1396 -0
data/lib/dtd/archiving_dtd/2.3/dtd/archivearticle.dtd ADDED
@@ -0,0 +1,1175 @@
1
+ <!-- ============================================================= -->
2
+ <!-- MODULE: Journal Archiving and Interchange DTD -->
3
+ <!-- VERSION: 2.3 -->
4
+ <!-- DATE: February 2007 -->
5
+ <!-- -->
6
+ <!-- ============================================================= -->
7
+
8
+ <!-- ============================================================= -->
9
+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
10
+ <!-- TYPICAL INVOCATION -->
11
+ <!--
12
+ "-//NLM//DTD Journal Archiving and Interchange DTD v2.3 20070202//EN"
13
+ Delivered as file "archivearticle.dtd" -->
14
+ <!-- ============================================================= -->
15
+
16
+
17
+ <!-- ============================================================= -->
18
+ <!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
19
+ <!-- Archiving and Interchange DTD Suite -->
20
+ <!-- -->
21
+ <!-- PURPOSE: DTD to describe a full-text journal article -->
22
+ <!-- -->
23
+ <!-- The Journal Archiving and Interchange DTD -->
24
+ <!-- describes journal articles and some non-article -->
25
+ <!-- material such as product and book reviews for -->
26
+ <!-- repository or interchange purposes. It describes -->
27
+ <!-- both the metadata for a journal article and the -->
28
+ <!-- full content of the article. -->
29
+ <!-- This DTD was constructed using the modules in the -->
30
+ <!-- Archiving and Interchange DTD Suite, using almost -->
31
+ <!-- no customization. -->
32
+ <!-- -->
33
+ <!-- CONTAINS: 1) Declare and invoke the Archival (Green) DTD- -->
34
+ <!-- specific module of modules, that names any -->
35
+ <!-- modules created expressly for this DTD. -->
36
+ <!-- (%archivecustom-modules.ent;) -->
37
+ <!-- 2) Declare and invoke the DTD Suite module of -->
38
+ <!-- modules (%modules.ent;), the Archiving and -->
39
+ <!-- Interchange Suite module that names all the -->
40
+ <!-- Suite modules this DTD might invoke -->
41
+ <!-- 3) Invoke DTD-specific classes over-ride module -->
42
+ <!-- (%archivecustom-classes.ent;) -->
43
+ <!-- 4) Invoke Suite default classes -->
44
+ <!-- (%default-classes.ent;) -->
45
+ <!-- 5) Invoke DTD-specific mixes over-ride module -->
46
+ <!-- (%archivecustom-mixes.ent;) -->
47
+ <!-- 6) Invoke Suite default mixes -->
48
+ <!-- (%default-mixes.ent;) -->
49
+ <!-- 7) Invoke DTD-specific content model over-ride -->
50
+ <!-- module (%archivecustom-models.ent;) -->
51
+ <!-- 8) Invoke the Common Element Module (from Suite) -->
52
+ <!-- 9) Invoke all the Class Modules (from Suite) as -->
53
+ <!-- well as any DTD-specific element modules -->
54
+ <!-- 10) Parameter Entities for attribute values used -->
55
+ <!-- in this module (DTD-specific definitions) -->
56
+ <!-- 11) Define document element (Article <article>) -->
57
+ <!-- 12) Define Front Matter <front> -->
58
+ <!-- 13) Define Body Matter <body> -->
59
+ <!-- 14) Define Back Matter <back> -->
60
+ <!-- -->
61
+ <!-- CREATED FOR: -->
62
+ <!-- Digital Archive of Journal Articles -->
63
+ <!-- National Center for Biotechnology Information -->
64
+ <!-- (NCBI) -->
65
+ <!-- National Library of Medicine (NLM) -->
66
+ <!-- -->
67
+ <!-- ORIGINAL CREATION DATE: -->
68
+ <!-- December 2002 -->
69
+ <!-- -->
70
+ <!-- CREATED BY: Jeff Beck (NCBI) -->
71
+ <!-- Deborah Lapeyre (Mulberry Technologies, Inc.) -->
72
+ <!-- Bruce Rosenblum (Inera Inc.) -->
73
+ <!-- -->
74
+ <!-- The Journal Archiving and Interchange DTD is -->
75
+ <!-- built from the Archiving and Interchange DTD -->
76
+ <!-- Suite. -->
77
+ <!-- -->
78
+ <!-- The Archiving and Interchange DTD Suite evolved -->
79
+ <!-- from NLM/NCBI's pmc-1 DTD. -->
80
+ <!-- -->
81
+ <!-- NLM thanks the Harvard University Libraries, both -->
82
+ <!-- for proposing that a draft archiving NLM DTD for -->
83
+ <!-- life sciences journals be extended to accommodate -->
84
+ <!-- journals in all disciplines and for sponsoring -->
85
+ <!-- Bruce Rosenblum's collaboration with other DTD -->
86
+ <!-- authors in completing Version 1.0. The Andrew W. -->
87
+ <!-- Mellon Foundation provided support for these -->
88
+ <!-- important contributions. -->
89
+ <!-- -->
90
+ <!-- Suggestions for refinements and enhancements to -->
91
+ <!-- this DTD should be sent in email to: -->
92
+ <!-- archive-dtd@ncbi.nlm.nih.gov -->
93
+ <!-- ============================================================= -->
94
+
95
+
96
+ <!-- ============================================================= -->
97
+ <!-- DTD VERSION/CHANGE HISTORY -->
98
+ <!-- ============================================================= -->
99
+ <!--
100
+
101
+ =============================================================
102
+
103
+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
104
+
105
+ =============================================================
106
+ Version 2.3 (DAL/BTU) v2.3 (2007-02-02)
107
+
108
+ Enhancement Release (2.3) following the Working Group meetings
109
+ of Oct-Nov/2006-Jan/2007. No backward-incompatible changes.
110
+ Archiving loosened even more. New structures for all the DTDs.
111
+
112
+ 21. FLOATS WRAPPER - Added new element <floats-wrap> to both of the
113
+ models for article (article-short and article-full) and the model
114
+ for sub-article. This new element, which follows the <back>
115
+ element, is a just a wrapper to hold the floating objects that
116
+ occur anywhere in the article. Some publishers like to
117
+ collect all the "floating objects" (figures, tables, text boxes,
118
+ graphics, etc.) together at the end of the document rather than
119
+ interspersing them throughout the parts of the article where
120
+ they are referenced.
121
+
122
+ 20. NLM CITATION - Added <nlm-citation> as an alternative to
123
+ unstructured <citation>s by adding <nlm-citation>
124
+ to -%citation.class;. This changed the models for:
125
+ - <ref>, which uses %citation.class; inside %ref-model;
126
+ - <p> through &p-elements;
127
+ - to inside cell mix
128
+ - added <nlm-citation> module declaration to
129
+ -%archivecustom-modules.ent;
130
+ - invoked -%nlm-citation.ent in this DTD
131
+
132
+ 19. DTD VERSION ATTRIBUTE - Fixed attribute value changed from "2.2"
133
+ to "2.3" to reflect latest version of DTD
134
+
135
+ 18. Updated public identifier to "v2.3 20070202//EN"
136
+
137
+ =============================================================
138
+ Version 2.2 (DAL/BTU) v2.2 (2006-04-30)
139
+
140
+ Backwards-compatible changes to meet operational needs.
141
+ Typical changes include adding attribute values and making
142
+ required elements optional.
143
+
144
+ 17. DTD VERSION ATTRIBUTE - Fixed attribute value changed from "2.1"
145
+ to "2.2" to reflect latest version of DTD
146
+
147
+ 16. RESPONSE TYPE ATTRIBUTE - Only the comment has changed to reflect
148
+ the usage. First, the use of the attribute is no longer
149
+ discouraged. Second, there are a few suggested values.
150
+
151
+ 15. SUB-ARTICLE/RESPONSE METADATA
152
+ a. Added new element <front-stub> as an alternative to the
153
+ typical <front> metadata inside a <sub-article>, so that not
154
+ as much metadata is replicated between the article and
155
+ sub-article. For example, a <sub-article> that uses a
156
+ <front-stub> will inherit all of its <journal-meta> from the
157
+ journal meta of the associated article.
158
+
159
+ b. Changed the model for %article-short-model; (which is used
160
+ only for <response> to also use <front-stub>
161
+
162
+ 14. ID ATTRIBUTES- Added <sub-article> and <response> through
163
+ their attribute Parameter Entities
164
+
165
+ 13. SIGNATURE BLOCK- Added <sig-block> to the end of article <body>
166
+
167
+ 12. ARTICLE TYPES ATTRIBUTE - Added new values to the list of
168
+ suggested values in the comments:
169
+ - collection
170
+ - dissertation
171
+ - partial-retraction
172
+ - rapid-communication
173
+ - reprint
174
+ - translation
175
+
176
+ 11. Updated public identifier to "v2.2 20060430//EN"
177
+
178
+ =============================================================
179
+ Version 2.1 (DAL/BTU) v2.1 (2005-06-30)
180
+
181
+
182
+ Changed to MathML 2.0 and MathML 2.0 Character Sets
183
+ Added new material requested by the online list
184
+
185
+ 10. Modified Module of Modules to include new MathML 2.0 DTD
186
+ (mathml2.dtd,v 1.12 2003/11/04) and modified entity
187
+ "xmlspecchars.ent" to include the new MathML Character sets
188
+ which match Unicode 4.0.
189
+
190
+ Implementor Alert: New directory structure for the character
191
+ sets was also adopted, to match the new MathML directories.
192
+
193
+ Implementor Alert: New directory structure for the character
194
+ sets was also adopted, to match the new MathML directories.
195
+ There are now 3 character set directories:
196
+ - iso8879 (from SGML used in MathML)
197
+ - iso9573-13 (from ISO Tech Rpt used in MathML)
198
+ - xmlchars (from SGML not used in MathML)
199
+
200
+ 9. Updated public identifier to "v2.3 20070202", modified the
201
+ fpis of the updated modules (both publishing custom modules
202
+ and the Suite modules), and changed the "dtd-version" fixed
203
+ attribute to reference latest version of DTD (version "2.1").
204
+
205
+ =============================================================
206
+ Version 2.0 (DAL/BTU) v2.0 (2004-07-30)
207
+
208
+
209
+ Major requirement changes led to the new release, producing
210
+ DTD version "2.0":
211
+ a) The splitting of the Archival and Interchange Tag Set
212
+ DTDs into three DTDs from two: an authoring DTD, an
213
+ archive regularization and interchange DTD (the
214
+ current Blue Publishing DTD), and a preservationist
215
+ archive DTD (the current Green Archiving and Interchange
216
+ DTD).
217
+ b) AIT Working Group suggestions from the June 04 meeting
218
+ and June/July 2004 followup discussions
219
+ c) Suite remodularization to meet new (and newly articulated)
220
+ modularization requirements
221
+ d) New or renamed classes and mixes to make modifications
222
+ easier and more consistent
223
+
224
+ 8. COMPLETE MODELS WHEN OVER-RIDING A CONTENT MODEL
225
+ (for all Parameter Entities suffixed "-model")
226
+ ### Customization Alert ###
227
+ Made all the model over-rides consistent. Some included
228
+ the outer parentheses, some did not. They all do now.
229
+ Added parentheses to Parameter Entity and removed them
230
+ from the Element Declarations:
231
+ - %article-short-model;
232
+ - %article-full-model;
233
+ - %front-model;
234
+ - %body-model;
235
+ - %back-model;
236
+
237
+ 7. ATTRIBUTE VALUE LISTS
238
+ a. For the Green (Preservationist Archival) DTD, changed all
239
+ explicit attribute value lists to CDATA. In the future,
240
+ attribute value lists will be a feature of the Blue
241
+ (Publishing) and new Authoring DTDs.
242
+ - Added Parameter Entities to hold "date-type"
243
+ - Changed the following attributes:
244
+ article-type (in %article-atts;)
245
+ b. Removed Parameter Entity definition for
246
+ %article-types: since it was not being used at all!
247
+ The attribute takes CDATA values.
248
+
249
+ c. SUBARTICLE ATTRIBUTES - made into a Parameter Entity
250
+
251
+
252
+ 6. PARAMETER ENTITY CLEANUP AND REGULARIZATION
253
+
254
+ a. RENAME ELEMENT MIXES NOT TO END IN "-elements"
255
+ ### Customization Alert ###
256
+ Names ending in "-elements" saved for the particular mixes
257
+ that will be added to #PCDATA for a particular element,
258
+ therefore:
259
+ - %doc-back-matter-elements; ==> %doc-back-matter-mix;
260
+
261
+ b. FRONT MATTER MODEL - rewritten to use new class Parameter
262
+ Entity %front-back.class; and to use %list.class; rather
263
+ than just <def-list>. This widens the model of Front Matter
264
+ by adding <list>.
265
+
266
+ 5. REMODULARIZATION - The entire Archiving and Interchange DTD
267
+ Suite was remodularized. Replaced the previous single Archiving
268
+ customization module (archivecustomize.ent) with the
269
+ following single-function customization modules:
270
+ - archivecustom-modules.ent (DTD-specific module naming)
271
+ - archivecustom-classes.ent (DTD-specific classes over-rides)
272
+ - default.classes (Default classes declarations)
273
+ - archivecustom-mixes.ent (DTD-specific mixes over-rides)
274
+ - default-mixes (Default mixes declarations)
275
+ - archivecustom-models.ent (DTD-specific content model
276
+ over-rides to the base Suite)
277
+ There are two types of such over-rides. One that
278
+ replaces a complete content model (which are named with a
279
+ suffix "-model") and those that are OR groups of
280
+ elements, intended to be mixed with #PCDATA inside
281
+ a particular model (which are named with an "-elements"
282
+ suffix).
283
+
284
+ 4. VERSION 2.0 - Updated public identifier to "v2.1 20050630" on
285
+ this module and the module-of-modules module and changed the
286
+ "dtd-version" fixed attribute to reference latest version
287
+ of DTD (version "2.0").
288
+
289
+ =============================================================
290
+ Version 1.1 (TRG) v1.1 (2003-11-01)
291
+
292
+ 3. Updated public identifier to "v1.1 20031101"
293
+
294
+ 2. Changed Parameter Entity %dtd-version; to reference latest
295
+ version of DTD (version 1.1)
296
+
297
+ 1. Updated public identifiers for modules.ent and
298
+ archivecustomize.ent to reflect modules' modification.
299
+ Rationale: To call updated modules.
300
+ -->
301
+
302
+
303
+ <!-- ============================================================= -->
304
+ <!-- DESIGN CONSIDERATIONS -->
305
+ <!-- ============================================================= -->
306
+
307
+
308
+ <!-- MODULAR DTD LIBRARY
309
+ A set of journal archiving and interchange
310
+ DTD modules was written as the basis for
311
+ publishing, interchange, and repository
312
+ DTDs, with the intention that DTDs for
313
+ specific purposes, such as this Journal
314
+ Archiving and Interchange DTD, would be
315
+ developed based on them.
316
+
317
+ This archiving DTD has been designed to
318
+ be descriptive, open, and inclusive to
319
+ allow journal articles to be translated into
320
+ this format as conveniently as possible
321
+ from a wide variety of proprietary journal
322
+ article DTDs (such as Blackwell, Keton, and
323
+ Ovid).
324
+
325
+ This Archiving DTD has been developed from
326
+ the Archiving and Interchange DTD Suite
327
+ modules, in the approved manner, making
328
+ changes to the declarations in those modules
329
+ by over-riding Parameter Entity contents
330
+ by redefining the entities in the
331
+ %archivecustomize.ent;
332
+ module, which is called from this DTD file.
333
+ No changes to any of the original Archiving
334
+ and Interchange Suite modules are required
335
+ in order to use this DTD. -->
336
+
337
+
338
+ <!-- ============================================================= -->
339
+ <!-- VERSION 1.0 DESIGN CONSIDERATIONS -->
340
+ <!-- ============================================================= -->
341
+
342
+
343
+ <!-- THE MANY ROADS NOT TAKEN
344
+ In the interest of getting a version of this
345
+ DTD into production as quickly as practical,
346
+ several structures and functions that might
347
+ be appropriately included have been delayed
348
+ until a future version of this DTD. Such
349
+ components include:
350
+ - Questions and Answers (These may be
351
+ modeled with the current DTDs by using
352
+ paragraphs and lists)
353
+ - Continuing Medical Education material
354
+ (which frequently contains questions
355
+ and answers)
356
+ - Forms and fill-in-the-blank
357
+ - Conflict of Interest statements and
358
+ Financial Disclosure (May be modeled
359
+ as paragraphs or footnotes)
360
+ - Electronic and Digital Rights Management
361
+ - Advertising included in the journal:
362
+ + Job ads
363
+ + Classified advertising
364
+ + Display advertising
365
+ - Calendars, meeting schedules, and
366
+ announcements. (These can be handled
367
+ as ordinary articles or sections within
368
+ articles)
369
+ - About the Journal material such as Author
370
+ Guidelines, Policy and Scope statements,
371
+ Editorial or advisory boards, detailed
372
+ indicia, etc.
373
+ -->
374
+
375
+
376
+ <!-- ============================================================= -->
377
+ <!-- MODULES OF MODULES INVOKED -->
378
+ <!-- ============================================================= -->
379
+
380
+
381
+ <!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
382
+ <!-- Names all DTD-specific external modules -->
383
+ <!ENTITY % archivecustom-modules.ent PUBLIC
384
+ "-//NLM//DTD Journal Archiving DTD-Specific Modules v2.3 20070202//EN"
385
+ "archivecustom-modules.ent" >
386
+ %archivecustom-modules.ent;
387
+
388
+
389
+ <!-- MODULE TO NAME THE MODULES -->
390
+ <!-- Declares all the external modules that are
391
+ part of the modular Journal Archiving and
392
+ Interchange DTD Suite library. Thus it does
393
+ NOT declare itself; the DTD-specific
394
+ module-of-modules; any DTD-specific class,
395
+ mix, or model over-ride modules; or any new
396
+ new content modules specific to this DTD.
397
+ Those are declared in the DTD-specific
398
+ module of modules.
399
+ Since this module declares but does not
400
+ invoke modules, this DTD then invokes any
401
+ modules it uses by referencing the external
402
+ Parameter Entities defined in the Module of
403
+ Modules. To include a set of elements (such
404
+ as all the lists or the MathML elements) this
405
+ module defines the external Parameter Entity
406
+ for the module(s) that contains the MathML
407
+ declarations and the DTD references that
408
+ entity. -->
409
+ <!ENTITY % modules.ent PUBLIC
410
+ "-//NLM//DTD Archiving and Interchange DTD Suite Module of Modules v2.3 20070202//EN"
411
+ "modules.ent" >
412
+ %modules.ent;
413
+
414
+
415
+ <!-- ============================================================= -->
416
+ <!-- CUSTOMIZATION MODULES INVOKED -->
417
+ <!-- Note: These modules must be called after -->
418
+ <!-- all Module of Modules but before any other -->
419
+ <!-- modules. Unlike any other grouping, order -->
420
+ <!-- of these modules matters. -->
421
+ <!-- ============================================================= -->
422
+
423
+
424
+ <!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
425
+ <!-- Names the module that holds the DTD-specific
426
+ class definitions for the Journal Archiving
427
+ and Interchange DTD that over-rides the Suite
428
+ defaults.
429
+ (Defined in %archivecustom-modules.ent;) -->
430
+ %archivecustom-classes.ent;
431
+
432
+
433
+ <!-- DEFAULT ELEMENT CLASSES MODULE -->
434
+ <!-- Names the module that holds the standard
435
+ class definitions for the Journal Archiving
436
+ and Interchange DTD Suite. -->
437
+ %default-classes.ent;
438
+
439
+
440
+ <!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
441
+ <!-- Set up the Parameter Entities and element
442
+ class definitions that will be used to
443
+ over-ride some element mixes in this DTD.
444
+ (Defined in %archivecustom-modules.ent;) -->
445
+ %archivecustom-mixes.ent;
446
+
447
+
448
+ <!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
449
+ <!-- Names the module that holds the standard
450
+ mix definitions for the Journal Archiving
451
+ and Interchange DTD Suite. -->
452
+ %default-mixes.ent;
453
+
454
+
455
+ <!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
456
+ MODULE -->
457
+ <!-- Names the module that holds the over-rides
458
+ of content models, attribute lists, elements
459
+ lists to be used in content models, and
460
+ attribute values. These are DTD-specific.
461
+ (Defined in %archivecustom-modules.ent;) -->
462
+ %archivecustom-models.ent;
463
+
464
+
465
+ <!-- ============================================================= -->
466
+ <!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
467
+ <!-- ============================================================= -->
468
+
469
+
470
+ <!-- COMMON (SHARED) DECLARATIONS -->
471
+ <!-- Declarations for elements, attributes,
472
+ entities, and Notations that are shared by
473
+ more than one class module. Note: Must be
474
+ called before any of the class modules. -->
475
+
476
+ %common.ent;
477
+
478
+
479
+ <!-- ============================================================= -->
480
+ <!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
481
+ <!-- ============================================================= -->
482
+
483
+ <!-- ARTICLE METADATA ELEMENTS -->
484
+ %articlemeta.ent;
485
+
486
+
487
+ <!-- BACK MATTER ELEMENTS -->
488
+ %backmatter.ent;
489
+
490
+
491
+ <!-- DISPLAY (GRAPHICAL) ELEMENTS -->
492
+ %display.ent;
493
+
494
+
495
+ <!-- FORMATTING ELEMENT CLASSES -->
496
+ <!-- Elements that change rendition/display. -->
497
+ %format.ent;
498
+
499
+
500
+ <!-- JOURNAL METADATA ELEMENTS -->
501
+ %journalmeta.ent;
502
+
503
+
504
+ <!-- LINK CLASS ELEMENTS -->
505
+ %link.ent;
506
+
507
+
508
+ <!-- LIST CLASS ELEMENTS -->
509
+ %list.ent;
510
+
511
+
512
+ <!-- MATH ELEMENTS -->
513
+ %math.ent;
514
+
515
+
516
+ <!-- NLM CITATION ELEMENT -->
517
+ %nlmcitation.ent;
518
+
519
+
520
+ <!-- PARAGRAPH-LEVEL ELEMENTS -->
521
+ %para.ent;
522
+
523
+
524
+ <!-- PHRASE-LEVEL ELEMENTS -->
525
+ %phrase.ent;
526
+
527
+
528
+ <!-- BIBLIOGRAPHIC REFERENCE (CITATION)
529
+ CLASS ELEMENTS -->
530
+ %references.ent;
531
+
532
+
533
+ <!-- SECTION ELEMENTS -->
534
+ %section.ent;
535
+
536
+
537
+ <!-- ============================================================= -->
538
+ <!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
539
+ <!-- ============================================================= -->
540
+
541
+
542
+ <!-- MATHML SETUP MODULE -->
543
+ <!-- Invoke the MathML modules -->
544
+ %mathmlsetup.ent;
545
+
546
+
547
+
548
+ <!-- XHTML TABLE SETUP MODULE -->
549
+ <!-- Set up the necessary Parameter Entity values
550
+ and then invoke XHTML (HTML 4.0) table
551
+ module -->
552
+ %XHTMLtablesetup.ent;
553
+
554
+
555
+ <!-- SPECIAL CHARACTERS DECLARATIONS -->
556
+ <!-- Standard XML special character entities
557
+ used in this DTD -->
558
+ %xmlspecchars.ent;
559
+
560
+
561
+ <!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
562
+ <!-- Custom special character entities created
563
+ specifically for use in this DTD Suite -->
564
+ %chars.ent;
565
+
566
+
567
+ <!-- NOTATION DECLARATIONS MODULE -->
568
+ %notat.ent;
569
+
570
+
571
+ <!-- ============================================================= -->
572
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
573
+ <!-- ============================================================= -->
574
+
575
+
576
+ <!-- DTD VERSION -->
577
+ <!-- What version of this DTD was used to make
578
+ the document instance under consideration.
579
+ Note that this is a fixed value that should
580
+ change every time the DTD changes versions or
581
+ revisions. -->
582
+ <!ENTITY % dtd-version
583
+ "dtd-version
584
+ CDATA #FIXED '2.3'" >
585
+
586
+
587
+
588
+ <!-- ARTICLE ATTRIBUTES -->
589
+ <!-- Attributes for the top-level element
590
+ <article> -->
591
+ <!ENTITY % article-atts
592
+ "article-type
593
+ CDATA #IMPLIED
594
+ %dtd-version;
595
+ xml:lang NMTOKEN 'EN'
596
+ %XLINK.xmlns.attrib;
597
+ %MATHML.xmlns.attrib;
598
+ %Schema.xmlns.attrib;" >
599
+
600
+
601
+ <!-- SUB-ARTICLE ATTRIBUTES -->
602
+ <!-- Attributes for the <sub-article> element -->
603
+ <!ENTITY % sub-article-atts
604
+ "article-type
605
+ CDATA #IMPLIED
606
+ id ID #IMPLIED
607
+ xml:lang NMTOKEN 'EN'" >
608
+
609
+
610
+ <!-- RESPONSE ATTRIBUTES -->
611
+ <!-- Attributes for the <response> element -->
612
+ <!ENTITY % response-atts
613
+ "response-type
614
+ CDATA #IMPLIED
615
+ id ID #IMPLIED
616
+ xml:lang NMTOKEN 'EN'" >
617
+
618
+
619
+ <!-- ============================================================= -->
620
+ <!-- JOURNAL ARTICLE ELEMENTS -->
621
+ <!-- ============================================================= -->
622
+
623
+
624
+ <!-- ARTICLE MODEL (LIMITED) -->
625
+ <!-- Article-like model used for, for example,
626
+ a short sub-article such as a news brief that
627
+ is contained in side a journal article.
628
+ Only the metadata (<front> for full metadata
629
+ or <front-stub> for article metadata,
630
+ inheriting the rest from the parent article)
631
+ is required, although typical short articles
632
+ also have a body and may have references or
633
+ other back matter.
634
+ The <floats-wrap> container element is just
635
+ a wrapper to hold the floating objects
636
+ that occur anywhere in the article. Some
637
+ publishers like to collect all the floating
638
+ objects (figures, tables, text boxes,
639
+ graphics, etc.) together at the end rather
640
+ than interspersing them throughout the parts
641
+ of the article where they are referenced. -->
642
+ <!ENTITY % article-short-model
643
+ "((front | front-stub), body?, back?,
644
+ floats-wrap?)" >
645
+
646
+
647
+ <!-- ARTICLE MODEL WITH SUBARTICLE OR RESPONSE -->
648
+ <!-- Typical journal article model, which may
649
+ contain extended components, such as
650
+ sub-articles or responses, but which usually
651
+ contains neither.
652
+ The <floats-wrap> container element is just
653
+ a wrapper to hold the floating objects
654
+ that occur anywhere in the article. Some
655
+ publishers like to collect all the floating
656
+ objects (figures, tables, text boxes,
657
+ graphics, etc.) together at the end rather
658
+ than interspersing them throughout the parts
659
+ of the article where they are referenced. -->
660
+ <!ENTITY % article-full-model
661
+ "(front, body?, back?, floats-wrap?,
662
+ (sub-article* | response*) )" >
663
+
664
+
665
+ <!-- ARTICLE -->
666
+ <!-- The complete content of a journal article.
667
+ An article is potentially divided into
668
+ four (more typically three) parts: 1) the
669
+ Front Matter (article metadata or header),
670
+ the body of the article (main content), any
671
+ ancillary information such as a glossary or
672
+ appendix, and (the least common) a
673
+ response, that is a commentary on the
674
+ article itself. -->
675
+ <!ELEMENT article %article-full-model; >
676
+ <!-- article-type
677
+ What kind of article is this?
678
+ Note: When the article is a commentary on
679
+ another article, for example a correction or
680
+ addendum, this attribute is metadata for the
681
+ commentary itself, it does NOT define the
682
+ kind of article that is being corrected or
683
+ amended.
684
+ This is an optional CDATA attribute, but
685
+ an article type should be identified if
686
+ possible. Potential values include:
687
+ abstract The article itself is an
688
+ abstract (of a paper or
689
+ presentation), usually that
690
+ has been presented or published
691
+ separately.
692
+ addendum A published item that adds
693
+ additional information or
694
+ clarification to another item
695
+ Similar value "correction"
696
+ corrects an error in previously
697
+ published material
698
+ announcement
699
+ Material announced in the
700
+ publication (may or may not be
701
+ directly related to the pub)
702
+ article-commentary
703
+ An item whose subject or focus
704
+ is another article or articles;
705
+ this article comments on the
706
+ other article(s) (For example,
707
+ for a controversial article, the
708
+ editors of the publication
709
+ might invite an author of the
710
+ opposing opinion to comment on
711
+ the first article, and publish
712
+ the two together.)
713
+ book-review
714
+ Review or analysis of one or more
715
+ printed or online books (Note
716
+ that product reviews are a
717
+ separate type.)
718
+ books-received
719
+ Notification of items such as
720
+ books that have been received
721
+ by the publication for review
722
+ or other consideration
723
+ brief-report
724
+ A short and/or rapid announcement
725
+ of research results
726
+ calendar A list of events
727
+ case-report
728
+ Case study, case report, or other
729
+ description of a case
730
+ collection This value should only be used
731
+ to describe articles whose
732
+ intellectual content appears
733
+ primarily in the <sub-article>
734
+ or <response> elements.
735
+ correction A modification, or
736
+ correction of previously
737
+ published material (sometimes
738
+ called "errata") Similar value
739
+ "addendum" merely adds to
740
+ previously published material
741
+ dissertation
742
+ Thesis or dissertation written
743
+ as part of the completion of
744
+ a degree of study
745
+ discussion Invited discussion related to a
746
+ specific article or issue
747
+ editorial Opinion piece, policy statement,
748
+ or general commentary, typically
749
+ written by staff of the
750
+ publication. Note: similar value
751
+ "article-commentary" is reserved
752
+ for a commentary on a specific
753
+ article or articles.
754
+ in-brief Summary of items in the current
755
+ issue
756
+ introduction
757
+ An introduction to the
758
+ publication, a series of articles
759
+ within the publication, etc.,
760
+ typically for a special section
761
+ or issue
762
+ letter Letter to the publication,
763
+ typically commenting upon a
764
+ published item
765
+ meeting-report
766
+ Report of a conference,
767
+ symposium, or meeting
768
+ news News item
769
+ obituary Announcement of a death or
770
+ appreciation of a colleague
771
+ who has recently died
772
+ oration Reprint of a speech or oral
773
+ presentation
774
+ other Not any of the article types
775
+ explicitly named in this list
776
+ partial-retraction
777
+ Partial retraction of
778
+ previously published material
779
+ product-review
780
+ Description, analysis, or review
781
+ of a product or service, for
782
+ example a software package (note
783
+ that book review is a separate
784
+ type)
785
+ rapid-communication
786
+ Fast-breaking research update
787
+ or other news item
788
+ reply Reply to a letter or commentary,
789
+ typically by the original
790
+ author commenting upon the
791
+ comments
792
+ reprint Reprint of a previously
793
+ published article
794
+ research-article
795
+ Research article
796
+ retraction Retraction of previously
797
+ published material
798
+ review-article
799
+ Review or state-of-the-art
800
+ summary article
801
+ translation Translation of an article
802
+ originally produced in a
803
+ different language
804
+ dtd-version
805
+ Which version of the DTD does this article
806
+ use? The value is a #FIXED attribute, so
807
+ the entire attribute definition is defined
808
+ in a Parameter Entity, so the next version
809
+ of the DTD can use a different #FIXED value.
810
+ xml:lang The language in which the value of the
811
+ element is expressed. Recommended best
812
+ practice is to use values as defined in
813
+ RFC 1766, typically 2-letter language
814
+ codes such as "FR" (French), "EN" (English),
815
+ and "DE" (German). These values are NOT
816
+ case sensitive, so "EN" = "en". The values
817
+ may include hyphenated differentiations such
818
+ as "EN-AU" (Australian English) and "EN-US"
819
+ (United States English).
820
+ Processing and Conversion Note: All other
821
+ xml:lang attributes within the article
822
+ inherit the value set on <article> unless
823
+ explicitly set themselves with their own
824
+ "xml:lang" attribute.
825
+ xmlns Set up the pseudo-attributes for the
826
+ namespaces for any namespaces used in this
827
+ DTD. XLink and MathML are set up in the
828
+ MathML modules. These xmlns are called
829
+ here because certain older tools will not
830
+ work properly with namespaces unless they
831
+ are declared on the top level element.
832
+ The PEs are defined in the MathML modules. -->
833
+ <!ATTLIST article
834
+ %article-atts; >
835
+
836
+
837
+ <!-- ============================================================= -->
838
+ <!-- FRONT MATTER ELEMENTS -->
839
+ <!-- ============================================================= -->
840
+
841
+
842
+ <!-- FRONT MATTER MODEL -->
843
+ <!-- Model for the <front> matter (the header
844
+ metadata) of a journal article) -->
845
+ <!ENTITY % front-model "(journal-meta?, article-meta,
846
+ (%list.class; | %front-back.class;)* )" >
847
+
848
+
849
+ <!-- FRONT MATTER -->
850
+ <!-- The metadata concerning an article, such as
851
+ the name and issue of the journal in which it
852
+ appears and the name and author(s) of the
853
+ article.
854
+ In some journal DTDs this is called the
855
+ header information, and it includes metadata
856
+ concerning the journal <journal-meta> and
857
+ metadata concerning the issue of the journal
858
+ and the individual article <article-meta>. -->
859
+ <!ELEMENT front %front-model; >
860
+
861
+
862
+ <!-- ============================================================= -->
863
+ <!-- BODY ELEMENTS -->
864
+ <!-- ============================================================= -->
865
+
866
+
867
+ <!-- BODY MODEL -->
868
+ <!-- Content model for the Body (main textual
869
+ content) of a journal article. -->
870
+ <!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
871
+ sig-block?)" >
872
+
873
+
874
+ <!-- BODY OF THE ARTICLE -->
875
+ <!-- The main textual portion of the article that
876
+ conveys the content. -->
877
+ <!ELEMENT body %body-model; >
878
+
879
+
880
+ <!-- ============================================================= -->
881
+ <!-- BACK MATTER ELEMENTS -->
882
+ <!-- ============================================================= -->
883
+
884
+
885
+ <!-- BACK MATTER MODEL -->
886
+ <!-- Content model for the Back Matter (ancillary
887
+ material such as appendices) of a journal
888
+ article. -->
889
+ <!ENTITY % back-model "(title*, (%doc-back-matter-mix;)* )" >
890
+
891
+
892
+ <!-- BACK MATTER -->
893
+ <!-- Ancillary or supporting material not included
894
+ as part of the main textual content of a
895
+ journal article, for example appendices and
896
+ acknowledgments. -->
897
+ <!ELEMENT back %back-model; >
898
+
899
+
900
+ <!-- ============================================================= -->
901
+ <!-- SUBARTICLE -->
902
+ <!-- ============================================================= -->
903
+
904
+
905
+ <!-- SUBARTICLE MODEL -->
906
+ <!-- Content model for the <sub-article> element
907
+ -->
908
+ <!ENTITY % sub-article-model
909
+ "( (front | front-stub), body?, back?,
910
+ floats-wrap?, (sub-article* | response*) )"
911
+ >
912
+
913
+
914
+ <!-- SUBARTICLE -->
915
+ <!-- An article that is completely contained
916
+ inside another article. Both the article and
917
+ the subarticle have their own metadata. The
918
+ article has at very least journal and issue
919
+ information and start and end pages; it may
920
+ have a title, author, or other metadata.
921
+ The subarticle has its own, independent
922
+ metadata, such as authors, that it
923
+ may not share with the article that
924
+ encloses it.
925
+ Conversion Note: "Superarticles" that contain
926
+ other articles rarely contain much content of
927
+ their own, perhaps just a title and
928
+ introductory paragraph.
929
+ Authoring Note: This construction is NOT to
930
+ be used for an article and its response, or
931
+ for a series of responses, even if the
932
+ original article to which the responses are
933
+ replying is elsewhere. -->
934
+ <!ELEMENT sub-article %sub-article-model; >
935
+ <!-- article-type
936
+ What kind of article is this?
937
+ Note: When the article is a commentary on
938
+ another article, for example a correction or
939
+ addendum, this attribute is metadata for the
940
+ commentary itself, it does NOT define the
941
+ kind of article that is being corrected or
942
+ amended.
943
+ Authoring Note: All articles
944
+ should have types assigned if possible.
945
+ abstract The article itself is an
946
+ abstract (of a paper or
947
+ presentation), usually that
948
+ has been presented or published
949
+ separately.
950
+ addendum A published item that adds
951
+ additional information or
952
+ clarification to another item
953
+ Similar value "correction"
954
+ corrects an error in previously
955
+ published material
956
+ announcement
957
+ Material announced in the
958
+ publication (may or may not be
959
+ directly related to the pub)
960
+ article-commentary
961
+ An item whose subject or focus
962
+ is another article or articles;
963
+ this article comments on the
964
+ other article(s) (For example,
965
+ for a controversial article, the
966
+ editors of the publication
967
+ might invite an author of the
968
+ opposing opinion to comment on
969
+ the first article, and publish
970
+ the two together.)
971
+ book-review
972
+ Review or analysis of one or more
973
+ printed or online books (Note
974
+ that product reviews are a
975
+ separate type.)
976
+ books-received
977
+ Notification of items such as
978
+ books that have been received
979
+ by the publication for review
980
+ or other consideration
981
+ brief-report
982
+ A short and/or rapid announcement
983
+ of research results
984
+ calendar A list of events
985
+ case-report
986
+ Case study, case report, or other
987
+ description of a case
988
+ collection This value should only be used
989
+ to describe articles whose
990
+ intellectual content appears
991
+ primarily in the <sub-article>
992
+ correction A modification, or
993
+ correction of previously
994
+ published material (sometimes
995
+ called "errata") Similar value
996
+ "addendum" merely adds to
997
+ previously published material
998
+ discussion Invited discussion related to a
999
+ specific article or issue
1000
+ dissertation
1001
+ Thesis or dissertation written
1002
+ as part of the completion of
1003
+ a degree of study
1004
+ editorial Opinion piece, policy statement,
1005
+ or general commentary, typically
1006
+ written by staff of the
1007
+ publication. Note: similar value
1008
+ "article-commentary" is reserved
1009
+ for a commentary on a specific
1010
+ article or articles.
1011
+ in-brief Summary of items in the current
1012
+ issue
1013
+ introduction
1014
+ An introduction to the
1015
+ publication, a series of articles
1016
+ within the publication, etc.,
1017
+ typically for a special section
1018
+ or issue
1019
+ letter Letter to the publication,
1020
+ typically commenting upon a
1021
+ published item
1022
+ meeting-report
1023
+ Report of a conference,
1024
+ symposium, or meeting
1025
+ news News item
1026
+ obituary Announcement of a death or
1027
+ appreciation of a colleague
1028
+ who has recently died
1029
+ oration Reprint of a speech or oral
1030
+ presentation
1031
+ other Not any of the article types
1032
+ explicitly named in this list
1033
+ partial-retraction
1034
+ Partial retraction of
1035
+ previously published material
1036
+ product-review
1037
+ Description, analysis, or review
1038
+ of a product or service, for
1039
+ example a software package (note
1040
+ that book review is a separate
1041
+ type)
1042
+ rapid-communication
1043
+ Fast-breaking research update
1044
+ or other news item
1045
+ reply Reply to a letter or commentary,
1046
+ typically by the original
1047
+ author commenting upon the
1048
+ comments
1049
+ reprint Reprint of a previously
1050
+ published article
1051
+ research-article
1052
+ Research article
1053
+ retraction Retraction of previously
1054
+ published material
1055
+ review-article
1056
+ Review or state-of-the-art
1057
+ summary article
1058
+ translation Translation of an article
1059
+ originally produced in a
1060
+ different language
1061
+ id Unique identifier so the element may be
1062
+ referenced
1063
+ xml:lang The language in which the value of the
1064
+ element is expressed. Recommended best
1065
+ practice is to use values as defined in
1066
+ RFC 1766, typically 2-letter language
1067
+ codes such as "FR" (French), "EN" (English),
1068
+ and "DE" (German). These values are NOT
1069
+ case sensitive, so "EN" = "en". The values
1070
+ may include hyphenated differentiations such
1071
+ as "EN-AU" (Australian English) and "EN-US"
1072
+ (United States English).
1073
+ Processing and Conversion Note: All other
1074
+ xml:lang attributes within the article
1075
+ inherit the value set on <article> unless
1076
+ explicitly set themselves with their own
1077
+ "xml:lang" attribute. -->
1078
+ <!ATTLIST sub-article
1079
+ %sub-article-atts; >
1080
+
1081
+
1082
+ <!-- FRONT MODEL STUB -->
1083
+ <!-- Content model for the <front-stub> element,
1084
+ a reduced metadata set for use in
1085
+ sub-articles and responses, which will
1086
+ inherit metadata not defined in the stub
1087
+ from the enclosing article -->
1088
+ <!ENTITY % front-stub-model
1089
+ "(article-id*, title-group?,
1090
+ (contrib-group | aff | %x.class;)*,
1091
+ author-notes?,
1092
+ ( (fpage, lpage?, page-range?) |
1093
+ elocation-id)?,
1094
+ history?, permissions?, abstract*)" >
1095
+
1096
+
1097
+ <!-- STUB FRONT METADATA -->
1098
+ <!-- A reduced metadata set for use in
1099
+ sub-articles and responses, which will
1100
+ inherit metadata not defined in the stub
1101
+ from the enclosing article -->
1102
+ <!ELEMENT front-stub %front-stub-model; >
1103
+
1104
+
1105
+ <!-- ============================================================= -->
1106
+ <!-- RESPONSE ELEMENTS -->
1107
+ <!-- ============================================================= -->
1108
+
1109
+
1110
+ <!-- RESPONSE -->
1111
+ <!-- Reply, response, or commentary concerning the
1112
+ journal article. In the typical case, the
1113
+ response is included in the same XML package
1114
+ as the original article, and thus attached
1115
+ at the end of the article proper.
1116
+ Authoring Note: Frequently a reply or
1117
+ response is an article in its own right, not
1118
+ included as part of the original article.
1119
+ Such an article could use the
1120
+ <related-article> element in the article
1121
+ metadata to record the metadata for the
1122
+ original article.
1123
+ Conversion Note: This construction can also
1124
+ be used for the pathological case, rarely
1125
+ seen, in which several responses to an
1126
+ article are lumped together into a single
1127
+ container which is not the original article,
1128
+ merely a collection of responses. In one
1129
+ example we examined, the first two responses
1130
+ were to an original article which was else-
1131
+ where and the third response was a response
1132
+ to the first two responses. -->
1133
+ <!ELEMENT response %article-short-model; >
1134
+ <!-- response-type
1135
+ What kind of response is this?
1136
+ Note: This does NOT define the kind of
1137
+ article on which the response is commenting,
1138
+ it is metadata for the response itself.
1139
+ Suggested values include:
1140
+ addendum Adds additional information or
1141
+ clarification to the parent
1142
+ article
1143
+ discussion Discussion related to a specific
1144
+ issue described in the parent
1145
+ article
1146
+ reply Reply to the parent article.
1147
+ This is the most commonly used
1148
+ value.
1149
+ Authoring Note: This attribute was added to
1150
+ describe cases in which a series of articles
1151
+ is chained together: typically as an
1152
+ introduction to the article, an article, then
1153
+ several responses to the article.
1154
+ id Unique identifier so the element may be
1155
+ referenced
1156
+ xml:lang The language in which the value of the
1157
+ element is expressed. Recommended best
1158
+ practice is to use values as defined in
1159
+ RFC 1766, typically 2-letter language
1160
+ codes such as "FR" (French), "EN" (English),
1161
+ and "DE" (German). These values are NOT
1162
+ case sensitive, so "EN" = "en". The values
1163
+ may include hyphenated differentiations such
1164
+ as "EN-AU" (Australian English) and "EN-US"
1165
+ (United States English).
1166
+ Processing and Conversion Note: All other
1167
+ xml:lang attributes within the article
1168
+ inherit the value set on <article> unless
1169
+ explicitly set themselves with their own
1170
+ "xml:lang" attribute. -->
1171
+ <!ATTLIST response
1172
+ %response-atts; >
1173
+
1174
+
1175
+ <!-- ================== End Journal Archiving and Interchange DTD -->