xml_jats_resolver 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1312) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +6 -0
  3. data/CHANGELOG.md +3 -0
  4. data/Gemfile +8 -0
  5. data/LICENSE.md +25 -0
  6. data/README.md +3 -0
  7. data/Rakefile +10 -0
  8. data/lib/dtd/archiving_dtd/1.0/dtd/XHTMLtablesetup.ent +247 -0
  9. data/lib/dtd/archiving_dtd/1.0/dtd/archivearticle.dtd +815 -0
  10. data/lib/dtd/archiving_dtd/1.0/dtd/archivecustomize.ent +583 -0
  11. data/lib/dtd/archiving_dtd/1.0/dtd/articlemeta.ent +1431 -0
  12. data/lib/dtd/archiving_dtd/1.0/dtd/backmatter.ent +216 -0
  13. data/lib/dtd/archiving_dtd/1.0/dtd/catalog.ent +76 -0
  14. data/lib/dtd/archiving_dtd/1.0/dtd/chars.ent +333 -0
  15. data/lib/dtd/archiving_dtd/1.0/dtd/checksum.md5 +83 -0
  16. data/lib/dtd/archiving_dtd/1.0/dtd/common.ent +1609 -0
  17. data/lib/dtd/archiving_dtd/1.0/dtd/display.ent +988 -0
  18. data/lib/dtd/archiving_dtd/1.0/dtd/format.ent +403 -0
  19. data/lib/dtd/archiving_dtd/1.0/dtd/htmltable.dtd +334 -0
  20. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsa.ent +173 -0
  21. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsb.ent +146 -0
  22. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsc.ent +49 -0
  23. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsn.ent +117 -0
  24. data/lib/dtd/archiving_dtd/1.0/dtd/isoamso.ent +77 -0
  25. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsr.ent +205 -0
  26. data/lib/dtd/archiving_dtd/1.0/dtd/isobox.ent +67 -0
  27. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr1.ent +94 -0
  28. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr2.ent +53 -0
  29. data/lib/dtd/archiving_dtd/1.0/dtd/isodia.ent +41 -0
  30. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk1.ent +1 -1
  31. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk2.ent +1 -1
  32. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk3.ent +70 -0
  33. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk4.ent +1 -1
  34. data/lib/dtd/archiving_dtd/1.0/dtd/isolat1.ent +89 -0
  35. data/lib/dtd/archiving_dtd/1.0/dtd/isolat2.ent +148 -0
  36. data/lib/dtd/archiving_dtd/1.0/dtd/isomfrk.ent +79 -0
  37. data/lib/dtd/archiving_dtd/1.0/dtd/isomopf.ent +53 -0
  38. data/lib/dtd/archiving_dtd/1.0/dtd/isomscr.ent +79 -0
  39. data/lib/dtd/archiving_dtd/1.0/dtd/isonum.ent +103 -0
  40. data/lib/dtd/archiving_dtd/1.0/dtd/isopub.ent +110 -0
  41. data/lib/dtd/archiving_dtd/1.0/dtd/isotech.ent +183 -0
  42. data/lib/dtd/archiving_dtd/1.0/dtd/journalmeta.ent +269 -0
  43. data/lib/dtd/archiving_dtd/1.0/dtd/link.ent +417 -0
  44. data/lib/dtd/archiving_dtd/1.0/dtd/list.ent +361 -0
  45. data/lib/dtd/archiving_dtd/1.0/dtd/math.ent +220 -0
  46. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mathml2-qname-1.mod +275 -0
  47. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlalias.ent +564 -0
  48. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlextra.ent +128 -0
  49. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2-qname-1.mod +275 -0
  50. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2.dtd +1960 -0
  51. data/lib/dtd/archiving_dtd/1.0/dtd/mathmlsetup.ent +141 -0
  52. data/lib/dtd/archiving_dtd/1.0/dtd/mmlalias.ent +564 -0
  53. data/lib/dtd/archiving_dtd/1.0/dtd/mmlextra.ent +128 -0
  54. data/lib/dtd/archiving_dtd/1.0/dtd/modules.ent +344 -0
  55. data/lib/dtd/archiving_dtd/1.0/dtd/notat.ent +147 -0
  56. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-exchange.ent +354 -0
  57. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-tablesetup.ent +258 -0
  58. data/lib/dtd/archiving_dtd/1.0/dtd/para.ent +320 -0
  59. data/lib/dtd/archiving_dtd/1.0/dtd/phrase.ent +213 -0
  60. data/lib/dtd/archiving_dtd/1.0/dtd/readme.txt +247 -0
  61. data/lib/dtd/archiving_dtd/1.0/dtd/references.ent +559 -0
  62. data/lib/dtd/archiving_dtd/1.0/dtd/sampleminimal.xml +5 -0
  63. data/lib/dtd/archiving_dtd/1.0/dtd/samplesmall.xml +84 -0
  64. data/lib/dtd/archiving_dtd/1.0/dtd/section.ent +205 -0
  65. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsa.ent +173 -0
  66. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsb.ent +146 -0
  67. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsc.ent +49 -0
  68. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsn.ent +117 -0
  69. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamso.ent +77 -0
  70. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsr.ent +205 -0
  71. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isobox.ent +67 -0
  72. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr1.ent +94 -0
  73. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr2.ent +53 -0
  74. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isodia.ent +41 -0
  75. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk1.ent +1 -1
  76. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk2.ent +1 -1
  77. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk3.ent +70 -0
  78. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk4.ent +1 -1
  79. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat1.ent +89 -0
  80. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat2.ent +148 -0
  81. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomfrk.ent +79 -0
  82. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomopf.ent +53 -0
  83. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomscr.ent +79 -0
  84. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isonum.ent +103 -0
  85. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isopub.ent +110 -0
  86. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isotech.ent +183 -0
  87. data/lib/dtd/archiving_dtd/1.0/dtd/xmlspecchars.ent +274 -0
  88. data/lib/dtd/archiving_dtd/1.1/dtd/XHTMLtablesetup.ent +289 -0
  89. data/lib/dtd/archiving_dtd/1.1/dtd/archivearticle.dtd +819 -0
  90. data/lib/dtd/archiving_dtd/1.1/dtd/archivecustomize.ent +597 -0
  91. data/lib/dtd/archiving_dtd/1.1/dtd/articlemeta.ent +1464 -0
  92. data/lib/dtd/archiving_dtd/1.1/dtd/backmatter.ent +216 -0
  93. data/lib/dtd/archiving_dtd/1.1/dtd/catalog.ent +76 -0
  94. data/lib/dtd/archiving_dtd/1.1/dtd/chars.ent +340 -0
  95. data/lib/dtd/archiving_dtd/1.1/dtd/common.ent +1674 -0
  96. data/lib/dtd/archiving_dtd/1.1/dtd/display.ent +1334 -0
  97. data/lib/dtd/archiving_dtd/1.1/dtd/format.ent +401 -0
  98. data/lib/dtd/archiving_dtd/1.1/dtd/htmltable.dtd +334 -0
  99. data/lib/dtd/archiving_dtd/1.1/dtd/journalmeta.ent +283 -0
  100. data/lib/dtd/archiving_dtd/1.1/dtd/link.ent +475 -0
  101. data/lib/dtd/archiving_dtd/1.1/dtd/list.ent +416 -0
  102. data/lib/dtd/archiving_dtd/1.1/dtd/math.ent +288 -0
  103. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mathml2-qname-1.mod +1 -3
  104. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlalias.ent +1 -1
  105. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlextra.ent +1 -1
  106. data/lib/dtd/archiving_dtd/1.1/dtd/mathml2.dtd +1960 -0
  107. data/lib/dtd/archiving_dtd/1.1/dtd/mathmlsetup.ent +171 -0
  108. data/lib/dtd/archiving_dtd/1.1/dtd/modules.ent +349 -0
  109. data/lib/dtd/archiving_dtd/1.1/dtd/notat.ent +147 -0
  110. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-exchange.ent +354 -0
  111. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-tablesetup.ent +298 -0
  112. data/lib/dtd/archiving_dtd/1.1/dtd/para.ent +368 -0
  113. data/lib/dtd/archiving_dtd/1.1/dtd/phrase.ent +244 -0
  114. data/lib/dtd/archiving_dtd/1.1/dtd/references.ent +560 -0
  115. data/lib/dtd/archiving_dtd/1.1/dtd/section.ent +202 -0
  116. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsa.ent +1 -1
  117. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsb.ent +1 -1
  118. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsc.ent +1 -1
  119. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsn.ent +1 -1
  120. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamso.ent +1 -1
  121. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsr.ent +1 -1
  122. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isobox.ent +1 -1
  123. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr1.ent +1 -1
  124. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr2.ent +1 -1
  125. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isodia.ent +1 -1
  126. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk1.ent +1 -1
  127. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk2.ent +1 -1
  128. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk3.ent +1 -1
  129. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk4.ent +1 -1
  130. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat1.ent +1 -1
  131. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat2.ent +1 -1
  132. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomfrk.ent +1 -1
  133. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomopf.ent +1 -1
  134. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomscr.ent +1 -1
  135. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isonum.ent +1 -1
  136. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isopub.ent +1 -1
  137. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isotech.ent +1 -1
  138. data/lib/dtd/archiving_dtd/1.1/dtd/xmlspecchars.ent +274 -0
  139. data/lib/dtd/archiving_dtd/2.0/dtd/Readme.txt +225 -0
  140. data/lib/dtd/archiving_dtd/2.0/dtd/XHTMLtablesetup.ent +309 -0
  141. data/lib/dtd/archiving_dtd/2.0/dtd/archivearticle.dtd +952 -0
  142. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-classes.ent +157 -0
  143. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-mixes.ent +306 -0
  144. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-models.ent +756 -0
  145. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-modules.ent +116 -0
  146. data/lib/dtd/archiving_dtd/2.0/dtd/articlemeta.ent +1811 -0
  147. data/lib/dtd/archiving_dtd/2.0/dtd/backmatter.ent +277 -0
  148. data/lib/dtd/archiving_dtd/2.0/dtd/catalog.ent +115 -0
  149. data/lib/dtd/archiving_dtd/2.0/dtd/chars.ent +359 -0
  150. data/lib/dtd/archiving_dtd/2.0/dtd/common.ent +2790 -0
  151. data/lib/dtd/archiving_dtd/2.0/dtd/default-classes.ent +704 -0
  152. data/lib/dtd/archiving_dtd/2.0/dtd/default-mixes.ent +357 -0
  153. data/lib/dtd/archiving_dtd/2.0/dtd/display.ent +1468 -0
  154. data/lib/dtd/archiving_dtd/2.0/dtd/format.ent +412 -0
  155. data/lib/dtd/archiving_dtd/2.0/dtd/htmltable.dtd +334 -0
  156. data/lib/dtd/archiving_dtd/2.0/dtd/journalmeta.ent +341 -0
  157. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-classes.ent +200 -0
  158. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-mixes.ent +207 -0
  159. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-models.ent +859 -0
  160. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-modules.ent +125 -0
  161. data/lib/dtd/archiving_dtd/2.0/dtd/journalpublishing.dtd +955 -0
  162. data/lib/dtd/archiving_dtd/2.0/dtd/link.ent +510 -0
  163. data/lib/dtd/archiving_dtd/2.0/dtd/list.ent +465 -0
  164. data/lib/dtd/archiving_dtd/2.0/dtd/math.ent +329 -0
  165. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mathml2-qname-1.mod +1 -3
  166. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlalias.ent +1 -1
  167. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlextra.ent +1 -1
  168. data/lib/dtd/archiving_dtd/2.0/dtd/mathml2.dtd +1960 -0
  169. data/lib/dtd/archiving_dtd/2.0/dtd/mathmlsetup.ent +191 -0
  170. data/lib/dtd/archiving_dtd/2.0/dtd/modules.ent +417 -0
  171. data/lib/dtd/archiving_dtd/2.0/dtd/nlmcitation.ent +124 -0
  172. data/lib/dtd/archiving_dtd/2.0/dtd/notat.ent +172 -0
  173. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-exchange.ent +354 -0
  174. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-tablesetup.ent +308 -0
  175. data/lib/dtd/archiving_dtd/2.0/dtd/para.ent +420 -0
  176. data/lib/dtd/archiving_dtd/2.0/dtd/phrase.ent +278 -0
  177. data/lib/dtd/archiving_dtd/2.0/dtd/references.ent +726 -0
  178. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-green.xml +1 -0
  179. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-pub.xml +1 -0
  180. data/lib/dtd/archiving_dtd/2.0/dtd/section.ent +220 -0
  181. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsa.ent +1 -1
  182. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsb.ent +1 -1
  183. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsc.ent +1 -1
  184. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsn.ent +1 -1
  185. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamso.ent +1 -1
  186. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsr.ent +1 -1
  187. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isobox.ent +1 -1
  188. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr1.ent +1 -1
  189. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr2.ent +1 -1
  190. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isodia.ent +1 -1
  191. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk1.ent +1 -1
  192. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk2.ent +1 -1
  193. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk3.ent +1 -1
  194. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk4.ent +1 -1
  195. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat1.ent +1 -1
  196. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat2.ent +1 -1
  197. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomfrk.ent +1 -1
  198. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomopf.ent +1 -1
  199. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomscr.ent +1 -1
  200. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isonum.ent +97 -0
  201. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isopub.ent +1 -1
  202. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isotech.ent +1 -1
  203. data/lib/dtd/archiving_dtd/2.0/dtd/xmlspecchars.ent +290 -0
  204. data/lib/dtd/archiving_dtd/2.1/dtd/ArchiveReadme.txt +283 -0
  205. data/lib/dtd/archiving_dtd/2.1/dtd/XHTMLtablesetup.ent +320 -0
  206. data/lib/dtd/archiving_dtd/2.1/dtd/archivearticle.dtd +981 -0
  207. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-classes.ent +173 -0
  208. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-mixes.ent +317 -0
  209. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-models.ent +777 -0
  210. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-modules.ent +125 -0
  211. data/lib/dtd/archiving_dtd/2.1/dtd/articlemeta.ent +1816 -0
  212. data/lib/dtd/archiving_dtd/2.1/dtd/backmatter.ent +288 -0
  213. data/lib/dtd/archiving_dtd/2.1/dtd/catalog-v2.xml +577 -0
  214. data/lib/dtd/archiving_dtd/2.1/dtd/catalog.ent +179 -0
  215. data/lib/dtd/archiving_dtd/2.1/dtd/chars.ent +359 -0
  216. data/lib/dtd/archiving_dtd/2.1/dtd/common.ent +2991 -0
  217. data/lib/dtd/archiving_dtd/2.1/dtd/default-classes.ent +738 -0
  218. data/lib/dtd/archiving_dtd/2.1/dtd/default-mixes.ent +368 -0
  219. data/lib/dtd/archiving_dtd/2.1/dtd/display.ent +1480 -0
  220. data/lib/dtd/archiving_dtd/2.1/dtd/format.ent +412 -0
  221. data/lib/dtd/archiving_dtd/2.1/dtd/htmltable.dtd +334 -0
  222. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isobox.ent +61 -0
  223. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr1.ent +88 -0
  224. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr2.ent +47 -0
  225. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isodia.ent +35 -0
  226. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat1.ent +83 -0
  227. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat2.ent +142 -0
  228. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isonum.ent +97 -0
  229. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isopub.ent +105 -0
  230. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsa.ent +167 -0
  231. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsb.ent +143 -0
  232. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsc.ent +43 -0
  233. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsn.ent +114 -0
  234. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamso.ent +73 -0
  235. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsr.ent +204 -0
  236. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isogrk3.ent +64 -0
  237. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomfrk.ent +75 -0
  238. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomopf.ent +49 -0
  239. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomscr.ent +75 -0
  240. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isotech.ent +182 -0
  241. data/lib/dtd/archiving_dtd/2.1/dtd/journalmeta.ent +328 -0
  242. data/lib/dtd/archiving_dtd/2.1/dtd/link.ent +521 -0
  243. data/lib/dtd/archiving_dtd/2.1/dtd/list.ent +496 -0
  244. data/lib/dtd/archiving_dtd/2.1/dtd/math.ent +328 -0
  245. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlalias.ent +564 -0
  246. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlextra.ent +122 -0
  247. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2-qname-1.mod +286 -0
  248. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2.dtd +2206 -0
  249. data/lib/dtd/archiving_dtd/2.1/dtd/mathmlsetup.ent +280 -0
  250. data/lib/dtd/archiving_dtd/2.1/dtd/modules.ent +438 -0
  251. data/lib/dtd/archiving_dtd/2.1/dtd/notat.ent +172 -0
  252. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-exchange.ent +354 -0
  253. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-tablesetup.ent +308 -0
  254. data/lib/dtd/archiving_dtd/2.1/dtd/para.ent +445 -0
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  1309. data/lib/errors.rb +21 -0
  1310. data/lib/xml_jats_resolver.rb +64 -0
  1311. data/xml_jats_resolver.gemspec +24 -0
  1312. metadata +1396 -0
@@ -0,0 +1,2790 @@
1
+ <!-- ============================================================= -->
2
+ <!-- MODULE: Common (Shared) Elements Module -->
3
+ <!-- VERSION: 2.0 -->
4
+ <!-- DATE: August 2004 -->
5
+ <!-- -->
6
+ <!-- ============================================================= -->
7
+
8
+ <!-- ============================================================= -->
9
+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
10
+ <!-- TYPICAL INVOCATION -->
11
+ <!--
12
+ "-//NLM//DTD Archiving and Interchange DTD Suite Common (Shared) Elements Module v2.0 20040830//EN"
13
+ Delivered as file "common.ent" -->
14
+ <!-- ============================================================= -->
15
+
16
+
17
+
18
+ <!-- ============================================================= -->
19
+ <!-- SYSTEM: Archiving and Interchange DTD Suite -->
20
+ <!-- -->
21
+ <!-- PURPOSE: Defines the common parameter entities, calls the -->
22
+ <!-- shared modules (such as special characters and -->
23
+ <!-- notations) and provides declarations for elements -->
24
+ <!-- that do not properly fit into one class, since -->
25
+ <!-- they can be used at more than one structural level-->
26
+ <!-- -->
27
+ <!-- CONTAINS: 1) Default classes for elements defined in this -->
28
+ <!-- module. May be overridden by values in the -->
29
+ <!-- DTD's Customization Module -->
30
+ <!-- 2) Parameter Entities for attribute values -->
31
+ <!-- 3) Parameter Entities for content models -->
32
+ <!-- 4) Parameter Entities for attribute lists -->
33
+ <!-- 5) Elements used in many modules/classes -->
34
+ <!-- - Address elements -->
35
+ <!-- - Date elements -->
36
+ <!-- - Personal name elements -->
37
+ <!-- - Common metadata elements (shared by both -->
38
+ <!-- article metadata and bibliographic -->
39
+ <!-- reference metadata -->
40
+ <!-- -->
41
+ <!-- MODULES REQUIRED: -->
42
+ <!-- 1) Standard XML Special Characters Module -->
43
+ <!-- (%xmlspecchars.ent;) -->
44
+ <!-- 2) Custom XML Special Characters (%chars.ent;) -->
45
+ <!-- 3) Notation Declarations (%notat.ent;) -->
46
+ <!-- -->
47
+ <!-- CREATED FOR: -->
48
+ <!-- Digital archives and publishers who wish to -->
49
+ <!-- create a custom XML DTD for original markup of -->
50
+ <!-- journal literature, books, and related material, -->
51
+ <!-- or for archiving and transferring such material -->
52
+ <!-- between archives. -->
53
+ <!-- -->
54
+ <!-- This DTD is in the public domain. An organization -->
55
+ <!-- that wishes to create its own DTD from the suite -->
56
+ <!-- may do so without permission from NLM. -->
57
+ <!-- -->
58
+ <!-- The suite has been set up to be extended using a -->
59
+ <!-- new DTD file and a new DTD-specific customization -->
60
+ <!-- module to redefine the many Parameter Entities. -->
61
+ <!-- Do not modify the suite directly or redistribute -->
62
+ <!-- modified versions of the suite. -->
63
+ <!-- -->
64
+ <!-- In the interest of maintaining consistency and -->
65
+ <!-- clarity for potential users, NLM requests: -->
66
+ <!-- -->
67
+ <!-- 1. If you create a DTD from the Archiving and -->
68
+ <!-- Interchange DTD Suite and intend to stay -->
69
+ <!-- compatible with the suite, then please include -->
70
+ <!-- the following statement as a comment in all of -->
71
+ <!-- your DTD modules: -->
72
+ <!-- "Created from, and fully compatible with, -->
73
+ <!-- the Archiving and Interchange DTD Suite." -->
74
+ <!-- -->
75
+ <!-- 2. If you alter one or more modules of the suite, -->
76
+ <!-- then please rename your version and all its -->
77
+ <!-- modules to avoid any confusion with the -->
78
+ <!-- original suite. Also, please include the -->
79
+ <!-- following statement as a comment in all your -->
80
+ <!-- DTD modules: -->
81
+ <!-- "Based in part on, but not fully compatible -->
82
+ <!-- with, the Archiving and Interchange DTD -->
83
+ <!-- Suite." -->
84
+ <!-- -->
85
+ <!-- Suggestions for refinements and enhancements to -->
86
+ <!-- the DTD suite should be sent in email to: -->
87
+ <!-- archive-dtd@ncbi.nlm.nih.gov -->
88
+ <!-- -->
89
+ <!-- ORIGINAL CREATION DATE: -->
90
+ <!-- December 2002 -->
91
+ <!-- -->
92
+ <!-- CREATED BY: Jeff Beck (NCBI) -->
93
+ <!-- Deborah Lapeyre (Mulberry Technologies, Inc.) -->
94
+ <!-- Bruce Rosenblum (Inera Inc.) -->
95
+ <!-- -->
96
+ <!-- NLM thanks the Harvard University Libraries, both -->
97
+ <!-- for proposing that a draft archiving NLM DTD for -->
98
+ <!-- life sciences journals be extended to accommodate -->
99
+ <!-- journals in all disciplines and for sponsoring -->
100
+ <!-- Bruce Rosenblum's collaboration with other DTD -->
101
+ <!-- authors in completing Version 1.0. The Andrew W. -->
102
+ <!-- Mellon Foundation provided support for these -->
103
+ <!-- important contributions. -->
104
+ <!-- -->
105
+ <!-- ============================================================= -->
106
+
107
+
108
+ <!-- ============================================================= -->
109
+ <!-- DTD VERSION/CHANGE HISTORY -->
110
+ <!-- ============================================================= -->
111
+ <!--
112
+
113
+ =============================================================
114
+
115
+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
116
+
117
+ =============================================================
118
+ Version 2.0 (DAL/BTU) v2.0 (2004-08-30)
119
+
120
+
121
+ Major requirement changes led to the new release, producing
122
+ DTD version "2.0":
123
+ a) The splitting of the Archival and Interchange Tag Set
124
+ DTDs into three DTDs from two: an authoring DTD, an
125
+ archive regularization and interchange DTD (the
126
+ current Blue Publishing DTD), and a preservationist
127
+ archive DTD (the current Green Archiving and Interchange
128
+ DTD).
129
+ b) AIT Working Group suggestions from the June 04 meeting
130
+ and June/July 2004 followup discussions
131
+ c) Suite remodularization to meet new (and newly articulated)
132
+ modularization requirements
133
+ d) New or renamed classes and mixes to make modifications
134
+ easier and more consistent
135
+
136
+
137
+ 29. NEW ELEMENT <x> GENERATED TEXT AND PUNCTUATION
138
+ Added a container element to hold punctuation or other
139
+ generated text, typically when 1) an archive decides not
140
+ to have any text generated and thus to pre-generate such
141
+ things as commas or semicolons between keywords or 2)
142
+ when an archive receives text with <x> tags embedded and
143
+ wishes to retain them.
144
+
145
+ 28. PUBLISHER - Moved element here from %journalmeta.ent;
146
+ module since Book DTD also needed it and was not including
147
+ that module.
148
+
149
+ 27. PAGE ELEMENT ATTRIBUTES
150
+ a. Made an Parameter Entity for:
151
+ - %fpage-atts;
152
+ - %elocation-id-atts;
153
+ b. Gave %elocation-id-atts" the attribute "seq"
154
+
155
+ 26. PUB ID TYPES - Added the new attribute values to the
156
+ Parameter Entity %pub-id-types;, which is used on <article>
157
+ and other elements. New values: pmcid and art-access-id
158
+
159
+ 25. CUSTOM METADATA - Added the new <custom-meta> element, its
160
+ components, and its wrapper. This element is used to insert
161
+ name/value pairs for metadata elements that are in source
162
+ material but were never envisioned by this DTD. Allowed this
163
+ element at the end of <article-meta>.
164
+
165
+ 24. DATES
166
+ a. Made a new Parameter Entity %string-date-elements; to
167
+ hold all the elements that may be mixed with #PCDATA
168
+ inside a <string-date>
169
+ b. Also used %date-parts.class; and %x.class; in
170
+ the new PE %string-date-elements;
171
+
172
+ 23. COMPLETE MODELS WHEN OVER-RIDING A MODEL
173
+ (for all Parameter Entities suffixed "-model")
174
+ ### Customization Alert ###
175
+ Made all the model over-rides consistent. Some included
176
+ the outer parentheses, some did not. They all do now,
177
+ as this is the most flexible system, allowing for
178
+ #PCDATA, mixed, or element content. (This is in direct
179
+ contrast to the "-element" suffixed models, which are
180
+ designed to prohibit element content and permit only
181
+ #PCDATA or mixed content.) Added parentheses to Parameter
182
+ Entity and removed them from the Element Declaration.
183
+ - %custom-meta-model;
184
+ - %custom-meta-wrap-model;
185
+ - %def-model;
186
+ - %sec-model;
187
+ - %sec-opt-title-model;
188
+ - Removed parentheses from <notes>, <ack>, <address>, <date>
189
+
190
+ 22. CITATION MODEL / COPYRIGHT STATEMENT MODEL
191
+ ### Customization Alert ###
192
+ a. Replaced the Parameter Entity %copyright-statement-model;
193
+ with the OR list Parameter Entity
194
+ %copyright-statement-elements; and used that
195
+ within the content model of <copyright-statement>
196
+ b. Citation - In the PE %citation-elements; also
197
+ changed the PE -%ext-links.class; ==> -%address-links.class;
198
+ (Changed the content model of citation to match.)
199
+ c. In -%copyright-statement-elements;, replaced the mix
200
+ -%rendition-plus; with its constituent classes
201
+ d. In -%citation-elements;, replaced the mix -%simple-text;
202
+ with its constituent classes (with exception of
203
+ %address-link.class;).
204
+
205
+ 21. RELATED ARTICLE
206
+ ### Customization Alert ###
207
+ - Renamed
208
+ -%related-article-model; ==> -%related-article-elements;
209
+ (To match the DTD naming convention that full content
210
+ models are named with a "-model" suffix and groups of
211
+ elements to be added to #PCDATA for a particular
212
+ content model are named "-elements".)
213
+ - Started "-related-article-elements" PE with an OR Bar
214
+ - Deleted "ext-links.class", because these elements are
215
+ already in the %references.class; (no model change)
216
+
217
+ 20. INLINE MATH - <inline-formula> added to:
218
+ - %label-elements;
219
+
220
+ 19. RELATED ARTICLE ATTRIBUTES - Added the following attributes
221
+ to the element <related-article>:
222
+ a. "id" - to provide a unique identifier
223
+ b. "alternate-form-of", which works (similarly to the same
224
+ attribute when used on a <graphic> element) to point to
225
+ another <related-article> element within the same document
226
+ as an alternate form of the related article.
227
+
228
+ 18. ISSUE TITLE <issue-title> - Created new element for a theme or
229
+ special issue title
230
+ - Defined here in the common module
231
+ - Added to <article-meta>
232
+ - Added to %references.class; (therefore to <citation>,
233
+ <product>, and <related-article>
234
+ - Created new Parameter Entities %issue-title-elements;
235
+ which hold the OR-group of elements that may be mixed with
236
+ #PCDATA inside the content model
237
+
238
+ 17. ATTRIBUTION
239
+ - Moved <attrib> and its Parameter Entities from the paragraph
240
+ module to here, as it is numerous elements, such as <array>,
241
+ <boxed-text>, <fig>, <table-wrap>, etc., in the Archival DTD.
242
+
243
+ 16. CUSTOM METADATA - Added the new <custom-meta> element, its
244
+ components, and its wrapper. This element is used to insert
245
+ name/value pairs for metadata elements that are in source
246
+ material but were never envisioned by this DTD. Allowed this
247
+ element at the end of <article-meta> and <journal-meta>.
248
+
249
+ 15. EMAIL- Considered to be just another type of external link, as
250
+ <ext-link> is, so added to:
251
+ - %collab-elements;
252
+ - %copyright-statement-elements;
253
+
254
+ 14. DATES
255
+ a. Added new class %date-parts.class; to hold all the
256
+ potential components of date, such as <year>, <day>,
257
+ etc.
258
+ b. Made a new Parameter Entity %string-date-elements; to
259
+ hold all the elements that may be mixed with #PCDATA
260
+ inside a <string-date>
261
+ c. Used %date-parts.class; in that model.
262
+
263
+ 13. ROLE ELEMENT - Was added to the model for <citation>, thus
264
+ moved to this module from the article metadata module.
265
+
266
+
267
+ 12. NEW IDENTIFICATION ELEMENTS - in view of the larger role that
268
+ some publishers are giving to DOIs:
269
+
270
+ a. OBJECT ID - Added a new class Parameter Entity
271
+ %id.class; to hold the new element <object-id> Object
272
+ Identifier. The <object-id> element is used to capture any
273
+ publisher's or archive's ID, such as a DOI. This was modeled
274
+ as an element (rather than as an attribute) to allow for
275
+ multiple IDs. New PE used in:
276
+ - %references.class (therefore inside <citation>,
277
+ <related-article>, and <product>)
278
+ - metadata objects such as <abstract>
279
+ - display objects such as <figure>.
280
+ Added PE %object-id-atts; to hold the element's attributes
281
+
282
+ b. ISSUE ID <issue-id> - new element for an identifier such
283
+ as a DOI associated with a journal issue (as opposed to the
284
+ existing element <issue>, which is defined as the issue
285
+ number)
286
+ - Defined here in the common module
287
+ - Added to <article-meta>
288
+ - Added to %references.class; (therefore to <citation>,
289
+ <product>, and <related-article>
290
+ - Created PE %issue-id-atts; to hold the attributes.
291
+
292
+ c. VOLUME ID <volume-id> - new element for an identifier such
293
+ as a DOI associated with a volume of a journal (as opposed
294
+ to the existing element <volume>, which is defined as the
295
+ volume number)
296
+ - Defined here in the common module
297
+ - Added to <article-meta>
298
+ - Added to %references.class; (therefore to <citation>,
299
+ <product>, and <related-article>
300
+ - Created new Parameter Entities %volume-id-elements;
301
+ which hold the OR-group of elements that may be mixed with
302
+ #PCDATA inside the content model
303
+ - Added PE %volume-id-atts; to hold the attributes.
304
+
305
+
306
+ Note: All ID attributes for these new identification
307
+ elements was set to use the "pub-id-type" attribute,
308
+ which is for Archival (Green) set as a CDATA attribute.
309
+
310
+ 11. NAME CLASS / STRING NAME / PERSON NAME CLASS
311
+ a. Created a new element <string-name> for names that
312
+ do not follow the former, strict personal name model.
313
+ <string-name> holds any combination of #PCDATA and any of
314
+ the known personal-name elements such as <surname>.
315
+ - Used a new Parameter Entity %string-name-elements;
316
+ in the content model
317
+
318
+ b. Created a new class %name.class; to hold all the ways
319
+ to name people: <name>, <string-name>, and <collab>
320
+ who produce products or articles.
321
+
322
+ c. Allowed <string-name> to be used anywhere <name> is
323
+ used. Inside
324
+ - citation (by adding to %references.class;)
325
+ - product (by adding to %references.class;)
326
+
327
+ d. Added new attribute "initials" to the personal name
328
+ components: <surname> and <given-names>. This provides
329
+ a way to preserve the initials, for matching services
330
+ that prefer initials to full names. Since there are
331
+ many cases in which the initials cannot be determined
332
+ programmatically, we merely provide a bucket to record
333
+ them.
334
+
335
+ e. Added new Parameter Entities %given-name-atts; and
336
+ %surname-atts; to hold the new "initials" attribute.
337
+
338
+ 10. ATTRIBUTE VALUE LISTS - The Green (Archival) DTD needed to
339
+ change all explicit attribute value lists in the DTD to CDATA.
340
+ In the future, explicit list types will be a feature of the
341
+ Blue (Publishing) and new Authoring DTDs. Therefore, added
342
+ Parameter entities to hold the following attributes:
343
+ - date-type
344
+
345
+ 9. RELATED ARTICLE ATTRIBUTES - Added the following attributes
346
+ to the element <related-article>:
347
+ - "id ID #IMPLIED" attribute, so the related-article
348
+ can be referenced.
349
+ - "ext-link-type" - to indicate the type of link used to
350
+ point to the related article. Attribute was used with
351
+ exactly the same content (CDATA) and suggested values
352
+ as when used with the element <ext-link>.
353
+ - "issue" - used (along with "vol", "page", and "journal-id")
354
+ to provide metadata concerning the related article
355
+ - "journal-id"- used (along with "vol", "page", and "issue")
356
+ to provide metadata concerning the related article.
357
+ - "journal-id-type" - Performs the same function that this
358
+ attribute performs for the element <journal-id>. The
359
+ "journal-id" values are the same as those for existing
360
+ journal identifiers plus "issn".
361
+ - "alternate-form-of", which works (similarly to the same
362
+ attribute when used on a <graphic> element) to point to
363
+ another <related-article> element within the same document
364
+ as an alternate form of the related article.
365
+
366
+ 8. PARAMETER ENTITY CLEANUP AND REGULARIZATION
367
+
368
+ a. RENAME ELEMENT MIXES NOT TO END IN "-elements", since that
369
+ suffix is reserved for mixes that are added to #PCDATA in
370
+ a particular element
371
+ ### Customization Alert ###
372
+ Names ending in "-elements" saved for element-specific mixes
373
+ that will be added to #PCDATA for one element
374
+ - %sec-back-matter-elements; ==> %sec-back-matter-mix;
375
+ (Used in -%sec-model; and -%sec-opt-title-model;)
376
+
377
+ b. NEW CLASSES - Largely for classing and modification reasons,
378
+ the following new classes were added:
379
+ - %date.class;
380
+ - %def.class;
381
+ - %degree.class;
382
+ - %id.class;
383
+ - Removed duplicate %person-name.class;
384
+
385
+ c. NEW MIXES - To correct potential classing problems, new
386
+ Parameter Entities were created. The following content
387
+ models were changed to use these new entities.
388
+ - <etal> -%etal-elements;
389
+ - <ext-link> -%ext-link-elements;
390
+ - <fax> -%fax-elements;
391
+ - <given-names> -%given-names-elements;
392
+ - <issn> -%issn-elements;
393
+ - <issue> -%issue-elements;
394
+ - <label> -%label-elements;
395
+ - <long-desc> -%long-desc-elements;
396
+ - <phone> -%phone-elements;
397
+ - <prefix> -%prefix-elements;
398
+ - <publisher-name> -%publisher-name-elements;
399
+ - <role> -%role-elements;
400
+ - <suffix> -%suffix-elements;
401
+ - <surname> -%surname-elements;
402
+ - <uri> -%uri-elements;
403
+ - <volume> -%volume-elements;
404
+ - <volume-id> -%volume-id-elements;
405
+
406
+ - <bio> %bio-model; (which uses %just-para.class;)
407
+ - <def> %def-model;
408
+ - <def> %just-para.class;
409
+
410
+ d. RENAME CLASSES
411
+ ### Customization Alert ###
412
+ Not all classes ended in the ".class" suffix. Changed the
413
+ following to add the class suffix:
414
+ - %address-elements; (renamed -%address.class;) used in
415
+ - %aff-elements;
416
+ - %publisher-loc-elements;
417
+ - %address-model;
418
+ - %inline-math.class; used in -%label-elements;
419
+
420
+ e. PE %attrib-elements;
421
+ ### Customization Alert ###
422
+ Uses %emphasized-text; which now starts with an OR bar, so
423
+ removed the OR bar from this PE.
424
+
425
+ f. LINK CLASSES
426
+ - In %aff-elements;, replaced %link.class; with
427
+ the following classes (via use of %all-phrase;)
428
+ (no DTD change):
429
+ - %address-link.class; (external used in addresses)
430
+ - %simple-link.class; (the internal links, same)
431
+ - %article-link.class; (for journal articles)
432
+ - In -%collab-elements;
433
+ - Replaced -%ext-links.class; with the following class
434
+ (via use of %all-phrase;)
435
+ (no DTD change):
436
+ - address-link.class; (external used in addresses)
437
+ - Deleted -%inpara-address;
438
+ (No model change, %address-link.class; covers it.)
439
+ - In %copyright-statement-elements;, replaced
440
+ -%inpara-address; with -%address-link.class;
441
+ (via use of %all-phrase;)
442
+
443
+ 7. DEFAULT CLASSES - Were moved from this module to
444
+ %default-classes.ent;
445
+
446
+ 6. Updated public identifier to "v2.0 20040830"
447
+
448
+ =============================================================
449
+ Version 1.1 (TRG) v1.1 (2003-11-01)
450
+
451
+ 5. Made <copyright-statement> model into a parameter entity in
452
+ order to add <ext-link> to the content model.
453
+ Rationale: Permit linkage between copyright statement and
454
+ copyright holder's site.
455
+
456
+ 4. Added attribute "content-type" to element <ack>.
457
+ Rationale: To identify and preserve the semantic intent of
458
+ semantically rich source documents.
459
+
460
+ 3. Added ID attribute to the following elements:
461
+ - <ack>
462
+ - <address>
463
+ - <alt-text>
464
+ - <ext-link> (by modifying %ext-link-atts;)
465
+ - <institution>
466
+ - <long-desc>
467
+ - <notes> (by modifying parameter entity %notes-atts;)
468
+ Rationale: Provide unique identifier so these elements can be
469
+ linked to.
470
+
471
+ 2. Added element <label> to content model of <aff> (by adding
472
+ -%label.class; to parameter -%aff-elements;)
473
+ Rationale: To provide <label> when needed for format
474
+ over-ride.
475
+
476
+ =============================================================
477
+ Version 1.0 Changes Before Public Release
478
+ (Lapeyre) v1.0 (2002-12-25)
479
+
480
+ 1. ETAL - Changed the content model of <etal> to replace the
481
+ entire content model with a Parameter Entity, not just name
482
+ some elements that may mix with #PCDATA. Rationale: The
483
+ Authoring DTD would like to make <etal> EMPTY.
484
+ -->
485
+
486
+
487
+ <!-- ============================================================= -->
488
+ <!-- PARAMETER ENTITY DEPENDENCIES
489
+ Requires the following parameter entities
490
+ be defined before calling this module,
491
+ usually accomplished in the Customization
492
+ Module for the specific DTD:
493
+ - %address.class;
494
+ - %break.class;
495
+ - %emphasis.class;
496
+ - %inline-display.class;
497
+ - %just-rendition;
498
+ - %label.class;
499
+ - %para-level;
500
+ - %references.class;
501
+ - %rendition-plus;
502
+ - %sec-back-matter-mix;
503
+ - %sec-level;
504
+ - %sec-opt-title-model;
505
+ - %simple-link.class;
506
+ - %simple-phrase;
507
+ - %simple-text;
508
+ - %subsup.class;
509
+ - %might-link-atts; -->
510
+ <!-- ============================================================= -->
511
+
512
+
513
+ <!-- ============================================================= -->
514
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE VALUES -->
515
+ <!-- ============================================================= -->
516
+
517
+
518
+ <!-- HISTORY DATE TYPES -->
519
+ <!-- The <history> element contains one or more
520
+ <date> elements that record events in the
521
+ life of a publication.
522
+ date-type Attribute should only be used if the date
523
+ is one of the known types; otherwise omit
524
+ the attribute.
525
+ Values are:
526
+ accepted - Date manuscript was
527
+ accepted
528
+ received - Date manuscript received
529
+ rev-request - Date revisions were
530
+ requested or manuscript
531
+ was returned
532
+ rev-recd - Date revised manuscript
533
+ was received -->
534
+ <!ENTITY % date-types "accepted | received | rev-request |
535
+ rev-recd" >
536
+
537
+
538
+ <!-- ARTICLE/PUBLICATION IDENTIFIER TYPES -->
539
+ <!-- The "pub-id-type" attribute names the
540
+ type of identifier, or the organization or
541
+ system that defined this identifier for the
542
+ identifier of the journal article or a
543
+ cited publication.
544
+ Used on the <article-id> element, which
545
+ holds an identifier for the entire article.
546
+ Also used on the <pub-id> element, which
547
+ is an identifier for a publication cited in
548
+ a bibliographic reference (citation).
549
+ Valid Types include:
550
+ art-access-id
551
+ - Generic article accession id for
552
+ interchange and retrieval between
553
+ archives
554
+ coden - Obsolete PDB/CCDC identifier (may
555
+ be present on older articles)
556
+ be present on older articles)
557
+ doi - Digital Object Identifier for
558
+ the article
559
+ medline- NLM Medline identifier
560
+ other - None of the named identifiers
561
+ pii - Publisher Item Identifier, see
562
+ /epub/piius.htm
563
+ pmcid - PubMed Central identifier
564
+ pmid - PubMed ID (see
565
+ www.ncbi.nlm.nih.gov/entrez/
566
+ query.fcgi?db=PubMed)
567
+ publisher-id -
568
+ Publisher's identifying number
569
+ such as an 'article-id', 'artnum',
570
+ 'identifier', 'article- number',
571
+ etc.
572
+ sici - Serial Item and Contribution
573
+ Identifier (SICI). A journal
574
+ article may have more than one
575
+ SICI, one for a print version and
576
+ one for an electronic version. -->
577
+ <!ENTITY % pub-id-types "art-access-id | coden | doi | medline |
578
+ other | pii | pmcid | pmid |
579
+ publisher-id | sici" >
580
+
581
+
582
+ <!-- ============================================================= -->
583
+ <!-- PARAMETER ENTITIES FOR COMMENT MODELS -->
584
+ <!-- ============================================================= -->
585
+
586
+
587
+ <!-- DATE ELEMENTS MODEL -->
588
+ <!-- The content models for elements that describe
589
+ dates, such as Publication Date <pub-date>
590
+ and History Dates <date>. The <string-date>
591
+ element holds dates for which months and
592
+ years are not given, for example "first
593
+ quarter", "spring", etc. -->
594
+ <!ENTITY % date-model "( ( (day?, month?) | season)?,
595
+ year?, string-date?)" >
596
+
597
+
598
+ <!-- CONTENT MODEL FOR A STRUCTURAL SECTION -->
599
+ <!-- The model for a section that requires that a
600
+ section title be present, used for elements
601
+ such as Section and Appendix. -->
602
+ <!ENTITY % sec-model "(label?, title, (%para-level;)*,
603
+ (%sec-level;)*,
604
+ (%sec-back-matter-mix;)* )" >
605
+
606
+
607
+ <!-- CONTENT MODEL FOR AN UNTITLED SECTION -->
608
+ <!-- The model for a section-like structure that
609
+ may or may not have an initial title -->
610
+ <!ENTITY % sec-opt-title-model
611
+ "(label?, title?, (%para-level;)*,
612
+ (%sec-level;)*,
613
+ (%sec-back-matter-mix;)* )" >
614
+
615
+
616
+ <!-- LINK ELEMENTS -->
617
+ <!-- Elements for use in the linking elements
618
+ such as <xref>, <target>, and <ext-link> -->
619
+ <!ENTITY % link-elements
620
+ "| %emphasis.class; | %subsup.class;" >
621
+
622
+
623
+ <!-- TITLE ELEMENTS -->
624
+ <!-- Elements for use in all the title elements
625
+ such as <title>, <subtitle>, <trans-title>,
626
+ etc.
627
+ DESIGN NOTE: All inline mixes begin with an
628
+ OR bar, but since %simple-phrase; is an
629
+ inline mix, the OR bar is already there. -->
630
+ <!ENTITY % title-elements
631
+ "%simple-phrase; | %break.class;" >
632
+
633
+
634
+ <!-- ============================================================= -->
635
+ <!-- PARAMETER ENTITIES FOR LINKING ATTRIBUTES -->
636
+ <!-- ============================================================= -->
637
+
638
+
639
+ <!-- XLINK LINK ATTRIBUTES -->
640
+ <!-- Used for elements that are a link by
641
+ definition, such as the <xref> element.
642
+ xlink:href Provides an address or identifier of the
643
+ object to which the link points, for
644
+ example a URI or a filename
645
+ xlink:role Provides a URI reference pointing to some
646
+ resource that describes the role or function
647
+ of this link
648
+ xlink:title
649
+ Describes the meaning of the link in a
650
+ human-readable and displayable fashion
651
+ xlink:show Describes the requested presentation when
652
+ the link is traversed.
653
+ Values are:
654
+ embed Load the new presentation in the
655
+ place of the link
656
+ new Load a new window, frame, pane, or
657
+ other presentation
658
+ none No clue for the application
659
+ other Look to other markup for a clue
660
+ replace Load the new resource in the same
661
+ window, frame, pane, or other
662
+ presentation context as the link
663
+ started in
664
+ xlink:actuate
665
+ When is the link traversed, and under whose
666
+ control.
667
+ Values are:
668
+ none No clue for the application
669
+ onLoad Traverse the link immediately
670
+ upon loading the link
671
+ onRequest
672
+ User or software requests that the
673
+ link be traversed
674
+ other Look to other markup for a clue
675
+ -->
676
+ <!ENTITY % link-atts
677
+ "xmlns:xlink CDATA #FIXED
678
+ 'http://www.w3.org/1999/xlink'
679
+ xlink:type (simple) #FIXED 'simple'
680
+ xlink:href CDATA #REQUIRED
681
+ xlink:role CDATA #IMPLIED
682
+ xlink:title CDATA #IMPLIED
683
+ xlink:show (embed | new | none | other | replace)
684
+ #IMPLIED
685
+ xlink:actuate
686
+ (none | onLoad | onRequest | other)
687
+ #IMPLIED" >
688
+
689
+
690
+ <!-- MIGHT LINK XLINK ATTRIBUTES -->
691
+ <!-- Used for elements which may need to link to
692
+ external sources or other objects within
693
+ the document, but may not necessarily act
694
+ as a link at all. The attribute
695
+ "xlink:href" identifies the object to which
696
+ the link points. -->
697
+ <!ENTITY % might-link-atts
698
+ "xmlns:xlink CDATA #FIXED
699
+ 'http://www.w3.org/1999/xlink'
700
+ xlink:type (simple) #FIXED 'simple'
701
+ xlink:href CDATA #IMPLIED
702
+ xlink:role CDATA #IMPLIED
703
+ xlink:title CDATA #IMPLIED
704
+ xlink:show (embed | new | none | other | replace)
705
+ #IMPLIED
706
+ xlink:actuate
707
+ (none | onLoad | onRequest | other)
708
+ #IMPLIED" >
709
+
710
+
711
+ <!-- ============================================================= -->
712
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTES LISTS -->
713
+ <!-- (ALPHABETICAL ORDER) -->
714
+ <!-- ============================================================= -->
715
+
716
+
717
+ <!-- AFFILIATION ATTRIBUTES -->
718
+ <!-- Attributes for the Affiliation <aff>
719
+ element -->
720
+ <!ENTITY % aff-atts
721
+ "id ID #IMPLIED
722
+ rid IDREFS #IMPLIED" >
723
+
724
+
725
+ <!-- BIOGRAPHY ATTRIBUTES -->
726
+ <!-- Attributes for <bio> element
727
+ id Unique identifier so the element may be
728
+ referenced
729
+ rid Points to the identifier of an author or
730
+ authors
731
+ xlink:href Provides an address or identifier of the
732
+ object to which the link points, for
733
+ example a URI or a filename. -->
734
+ <!ENTITY % bio-atts
735
+ "id ID #IMPLIED
736
+ rid IDREFS #IMPLIED
737
+ %might-link-atts;" >
738
+
739
+
740
+ <!-- COLLABORATION ATTRIBUTES -->
741
+ <!-- Attributes for <collab> -->
742
+ <!-- collab-type
743
+ The type or role of the collaborators,
744
+ what function did they play in the
745
+ publication.
746
+ Suggested values include:
747
+ assignee
748
+ - Group or company to whom a patent
749
+ is awarded
750
+ authors - Content creators
751
+ editors - Content editors
752
+ compilers
753
+ - Put together a composite work
754
+ from multiple sources
755
+ guest-editors
756
+ - A group of editors that have been
757
+ invited to edit all or part of a
758
+ work
759
+ inventors
760
+ - Idea, software, or machine
761
+ creators
762
+ translators
763
+ - Translated the cited work from
764
+ one language into another
765
+ id Unique identifier so that the collaboration
766
+ can be referenced
767
+ xlink:href Provides an address or identifier of the
768
+ object to which the link points, for
769
+ example a URI or a filename -->
770
+ <!ENTITY % collab-atts
771
+ "collab-type
772
+ CDATA #IMPLIED
773
+ id ID #IMPLIED
774
+ %might-link-atts;" >
775
+
776
+
777
+ <!-- EXTERNAL LINK ATTRIBUTES -->
778
+ <!-- Attribute list for external links
779
+ ext-link-type
780
+ Type of external link. Use this attribute
781
+ if the type of external link is one of the
782
+ ones below or another named type.
783
+ Suggested values include:
784
+ aoi Astronomical Object Identifier
785
+ doi Digital Object Identifier
786
+ ec Enzyme nomenclature - see
787
+ http://www.chem.qmw.ac.uk/iubmb/enzyme/
788
+ ftp File transfer protocol
789
+ email An email address
790
+ gen GenBank identifier
791
+ genpept Translated Protein-encoding
792
+ sequence Database
793
+ highwire HighWire press intrajournal
794
+ pmid PubMed identifier
795
+ pdb Protein data bank. See
796
+ http://www.rcsb.org/pdb/
797
+ pgr Plant gene register. See
798
+ http://www.tarweed.com/pgr/
799
+ pir Protein Information Resource
800
+ see http://pir.georgetown.edu
801
+ pirdb Protein Information Resource
802
+ see http://pir.georgetown.edu
803
+ pmc PubMedCentral identifier
804
+ sprot Swiss-Prot. See
805
+ http://www.ebi.ac.uk/swissprot/
806
+ uri Website or web service
807
+ id Unique identifier so the element may be
808
+ referenced
809
+ xlink:href Provides an address or identifier of the
810
+ object to which the link points, for
811
+ example a URI or a filename -->
812
+ <!ENTITY % ext-link-atts
813
+ "ext-link-type
814
+ CDATA #IMPLIED
815
+ id ID #IMPLIED
816
+ %might-link-atts;" >
817
+
818
+
819
+ <!-- CITATION ATTRIBUTES -->
820
+ <!-- Attributes for <citation>
821
+ citation-type
822
+ Defines the type of work being referenced.
823
+ Suggested values include:
824
+ book Book
825
+ conf-proceedings
826
+ Conference proceedings
827
+ discussion Discussion among a group in
828
+ some forum - public, private,
829
+ or electronic, which may or
830
+ may not be moderated
831
+ gov Government publication
832
+ journal Journal article
833
+ list Listserv
834
+ other None of the listed types
835
+ patent Patent or patent application
836
+ personal-communication
837
+ Informal or personal
838
+ communication, such as a
839
+ phone call or an email
840
+ message
841
+ standard Standards document issued by
842
+ a recognized standards body,
843
+ such as ISO, ANSI, IEEE,
844
+ OASIS, etc.
845
+ thesis Work written as part of the
846
+ completion of an advanced
847
+ degree
848
+ web Website
849
+ id Unique identifier so the element may be
850
+ referenced
851
+ xlink:href Provides an address or identifier of the
852
+ object to which the link points, for
853
+ example a URI or a filename -->
854
+ <!ENTITY % citation-atts
855
+ "citation-type
856
+ CDATA #IMPLIED
857
+ id ID #IMPLIED
858
+ %might-link-atts;" >
859
+
860
+
861
+ <!-- DATE (HISTORICAL) ATTRIBUTES -->
862
+ <!-- date-type Attribute should only be used if the date
863
+ is one of the known types, otherwise omit
864
+ the attribute. Values are:
865
+ accepted - Date manuscript was
866
+ accepted
867
+ received - Date manuscript received
868
+ rev-request - Date revisions were
869
+ requested or manuscript
870
+ was returned
871
+ rev-recd - Date revised manuscript
872
+ was received -->
873
+ <!ENTITY % date-atts
874
+ "date-type (%date-types;) #IMPLIED" >
875
+
876
+
877
+ <!-- GIVEN NAMES ATTRIBUTES -->
878
+ <!-- initials The initial(s) for the given names of the
879
+ person. Particularly useful in those cases
880
+ that cannot be algorithmically determined. -->
881
+ <!ENTITY % given-names-atts
882
+ "initials CDATA #IMPLIED" >
883
+
884
+
885
+ <!-- ISSN ATTRIBUTES -->
886
+ <!-- Attribute list for <issn> -->
887
+ <!-- Used to record the type of publication, for
888
+ example, a print-only publication versus
889
+ an electronic-only publication, in any of
890
+ several life stages.
891
+ Suggested values include:
892
+ epub - Electronic publication
893
+ ppub - Print publication
894
+ epub-ppub - Published in both print and
895
+ electronic form
896
+ epreprint - Electronic preprint
897
+ dissemination
898
+ ppreprint - Print preprint dissemination
899
+ ecorrected - Corrected in electronic
900
+ pcorrected - Corrected in print
901
+ eretracted - Retracted in electronic
902
+ pretracted - Retracted in print -->
903
+ <!ENTITY % issn-atts
904
+ "pub-type CDATA #IMPLIED" >
905
+
906
+
907
+ <!-- ISSUE IDENTIFIER ATTRIBUTES -->
908
+ <!-- Attributes for the <issue-id> element
909
+ pub-id-type
910
+ Publication (article) Identifier Type
911
+ Names the type of identifier, or the
912
+ organization or system that defined this
913
+ identifier for the identifier of the journal
914
+ article or a cited publication. This is an
915
+ optional CDATA attribute that should be used
916
+ whenever the type is known.
917
+ Used on the <article-id> element, which
918
+ holds an identifier for the entire article.
919
+ Also used on the <pubid> element, which
920
+ is an identifier for a publication cited in
921
+ a bibliographic reference (citation).
922
+ Suggested values include:
923
+ coden - Obsolete PDB/CCDC identifier (may
924
+ be present on older articles)
925
+ doi - Digital Object Identifier
926
+ medline- NLM Medline identifier
927
+ other - None of the named identifiers
928
+ pii - Publisher Item Identifier, see
929
+ http://pubs.acs.org/epub/piius.htm
930
+ or
931
+ http://www.aip.org/epub/piipr.html
932
+ pmid - PubMed Central identifier (see
933
+ www.ncbi.nlm.nih.gov/entrez/
934
+ query.fcgi?db=PubMed)
935
+ publisher-id
936
+ - Publisher's identifier such
937
+ as an 'article-id', 'artnum',
938
+ 'identifier', 'article- number',
939
+ 'pub-id', etc.
940
+ sici - Serial Item and Contribution
941
+ Identifier (SICI). A journal
942
+ article may have more than one
943
+ SICI, one for a print version and
944
+ one for an electronic version. -->
945
+ <!ENTITY % issue-id-atts
946
+ "pub-id-type
947
+ CDATA #IMPLIED" >
948
+
949
+
950
+ <!-- NOTE ATTRIBUTES -->
951
+ <!-- Attribute list for <note> -->
952
+ <!-- notes-type To identify the type of note, if the type
953
+ can be/has been identified, for example,
954
+ "note-in-proof"
955
+ id Unique identifier so the element may be
956
+ referenced -->
957
+ <!ENTITY % notes-atts
958
+ "id ID #IMPLIED
959
+ notes-type CDATA #IMPLIED" >
960
+
961
+
962
+ <!-- OBJECT IDENTIFIER ATTRIBUTES -->
963
+ <!-- Attributes for the <object-id> element
964
+ pub-id-type
965
+ Publication (article) Identifier Type
966
+ Names the type of identifier, or the
967
+ organization or system that defined this
968
+ identifier for the identifier of the journal
969
+ article or a cited publication. This is an
970
+ optional CDATA attribute that should be used
971
+ whenever the type is known.
972
+ Used on the <article-id> element, which
973
+ holds an identifier for the entire article.
974
+ Also used on the <pubid> element, which
975
+ is an identifier for a publication cited in
976
+ a bibliographic reference (citation).
977
+ Suggested values include:
978
+ coden - Obsolete PDB/CCDC identifier (may
979
+ be present on older articles)
980
+ doi - Digital Object Identifier
981
+ medline- NLM Medline identifier
982
+ other - None of the named identifiers
983
+ pii - Publisher Item Identifier, see
984
+ http://pubs.acs.org/epub/piius.htm
985
+ or
986
+ http://www.aip.org/epub/piipr.html
987
+ pmid - PubMed Central identifier (see
988
+ www.ncbi.nlm.nih.gov/entrez/
989
+ query.fcgi?db=PubMed)
990
+ publisher-id
991
+ - Publisher's identifier such
992
+ as an 'article-id', 'artnum',
993
+ 'identifier', 'article- number',
994
+ 'pub-id', etc.
995
+ sici - Serial Item and Contribution
996
+ Identifier (SICI). A journal
997
+ article may have more than one
998
+ SICI, one for a print version and
999
+ one for an electronic version. -->
1000
+ <!ENTITY % object-id-atts
1001
+ "pub-id-type
1002
+ CDATA #IMPLIED" >
1003
+
1004
+
1005
+ <!-- RELATED ARTICLE ATTRIBUTES -->
1006
+ <!-- Attributes for <related-article>
1007
+ id Unique identifier so the element may be
1008
+ referenced
1009
+ alt-form-of
1010
+ Exactly like the "alt-form-of" attribute
1011
+ used with <graphic>, this is an IDREF
1012
+ attribute which points to the ID of another
1013
+ <related-article> in the same document
1014
+ rather than to an external file.
1015
+ related-article-type
1016
+ addendum Additional material for an
1017
+ article, generated too late
1018
+ to be added to the main text
1019
+ commentary-article
1020
+ Used in an commentary or
1021
+ editorial to link to the
1022
+ article on which it is
1023
+ commenting
1024
+ companion Used in an article to link
1025
+ to a companion (related
1026
+ or sibling) article
1027
+ corrected-article
1028
+ Used in a correction to link
1029
+ to the article being
1030
+ corrected. Sometimes called
1031
+ erratum.
1032
+ in-this-issue Related article in the same
1033
+ journal issue
1034
+ letter A letter to the publication
1035
+ or a reply to such a
1036
+ letter
1037
+ commentary Used in an article to link
1038
+ to its associated commentary
1039
+ or editorial
1040
+ correction-forward
1041
+ Used in an article to link
1042
+ forward to its associated
1043
+ correction (rarely used)
1044
+ retracted-article
1045
+ Used in a retraction to link
1046
+ to the article being retracted
1047
+ retraction-forward
1048
+ Used in an article to link
1049
+ forward to its associated
1050
+ retraction (rare)
1051
+ ext-link-type
1052
+ Type of external link used to point to the
1053
+ related article. Use this attribute
1054
+ if the type of external link is one of the
1055
+ ones below or another named type.
1056
+ Suggested values include:
1057
+ aoi Astronomical Object Identifier
1058
+ doi Digital Object Identifier
1059
+ ec Enzyme nomenclature - see
1060
+ http://www.chem.qmw.ac.uk/iubmb/enzyme/
1061
+ ftp File transfer protocol
1062
+ email An email address
1063
+ gen GenBank identifier
1064
+ genpept Translated Protein-encoding
1065
+ sequence Database
1066
+ highwire HighWire press intrajournal
1067
+ pdb Protein data bank. See
1068
+ http://www.rcsb.org/pdb/
1069
+ pgr Plant gene register. See
1070
+ http://www.tarweed.com/pgr/
1071
+ pir Protein Information Resource
1072
+ see http://pir.georgetown.edu
1073
+ pirdb Protein Information Resource
1074
+ see http://pir.georgetown.edu
1075
+ pmc PubMed Central identifier
1076
+ pmid PubMed identifier
1077
+ sprot Swiss-Prot. See
1078
+ http://www.ebi.ac.uk/swissprot/
1079
+ uri Website or web service
1080
+ The next five attributes are used to identify the
1081
+ journal in which the related article was published.
1082
+ vol Volume of the journal in which the related
1083
+ article exists. It is best practice to
1084
+ limit the scope to the current journal,
1085
+ the one in which the current article
1086
+ resides.
1087
+ page Page number of the related article. It is
1088
+ best practice to limit the scope to the
1089
+ current journal, the one in which the
1090
+ current article resides. The values for this
1091
+ attribute should be a first page or a page
1092
+ range.
1093
+ issue Issue number of the related article.
1094
+ journal-id Identifier for the journal which contains the
1095
+ related article.
1096
+ journal-id-type
1097
+ Indicates whose identifier this is, for
1098
+ example, "pub-id" for a publisher's
1099
+ identifier or "pmc" for PubMed Central.
1100
+ Suggested values include:
1101
+ archive Identifier assigned by an archive
1102
+ or other repository
1103
+ aggregator
1104
+ Identifier assigned by a data
1105
+ aggregator
1106
+ doi Digital Object Identifier for the
1107
+ entire journal, not just for the
1108
+ article (rare)
1109
+ index Identifier assigned by an
1110
+ abstracting or indexing service
1111
+ issn International Standard Serial Number
1112
+ of the journal in which the related
1113
+ article was published
1114
+ pmc Identifier assigned by PubMed Central
1115
+ for example, the pmc journal
1116
+ abbreviation such as "pnas", "mbc",
1117
+ "nar", "molcellb", which may be the
1118
+ same as the abbreviated journal
1119
+ title
1120
+ publisher-id
1121
+ Identifier assigned by the content
1122
+ publisher, for example, "MOLEC",
1123
+ "MOLCEL"
1124
+ nlm-ta Identifier assigned by the
1125
+ PubMed/Medline, and is typically
1126
+ the journal abbreviation, for
1127
+ example, "Mol Biol Cell", "Nucleic
1128
+ Acids Res", which may be the
1129
+ same as the abbreviated journal
1130
+ title.
1131
+ xlink:href Provides an address or identifier of the
1132
+ object to which the link points, for
1133
+ example a URI or a filename. -->
1134
+ <!ENTITY % related-article-atts
1135
+ "id ID #IMPLIED
1136
+ alternate-form-of
1137
+ IDREF #IMPLIED
1138
+ related-article-type
1139
+ CDATA #REQUIRED
1140
+ ext-link-type
1141
+ CDATA #IMPLIED
1142
+ vol CDATA #IMPLIED
1143
+ page CDATA #IMPLIED
1144
+ issue CDATA #IMPLIED
1145
+ journal-id
1146
+ CDATA #IMPLIED
1147
+ journal-id-type
1148
+ CDATA #IMPLIED
1149
+ %might-link-atts;" >
1150
+
1151
+
1152
+ <!-- SURNAME ATTRIBUTES -->
1153
+ <!-- initials The initial(s) for the given names of the
1154
+ person. Particularly useful in those cases
1155
+ that cannot be algorithmically determined. -->
1156
+ <!ENTITY % surname-atts
1157
+ "initials CDATA #IMPLIED" >
1158
+
1159
+
1160
+ <!-- VOLUME IDENTIFIER ATTRIBUTES -->
1161
+ <!-- Attributes for the <issue-id> element
1162
+ pub-id-type
1163
+ Publication (article) Identifier Type
1164
+ Names the type of identifier, or the
1165
+ organization or system that defined this
1166
+ identifier for the identifier of the journal
1167
+ article or a cited publication. This is an
1168
+ optional CDATA attribute that should be used
1169
+ whenever the type is known.
1170
+ Used on the <article-id> element, which
1171
+ holds an identifier for the entire article.
1172
+ Also used on the <pubid> element, which
1173
+ is an identifier for a publication cited in
1174
+ a bibliographic reference (citation).
1175
+ Suggested values include:
1176
+ coden - Obsolete PDB/CCDC identifier (may
1177
+ be present on older articles)
1178
+ doi - Digital Object Identifier
1179
+ medline- NLM Medline identifier
1180
+ other - None of the named identifiers
1181
+ pii - Publisher Item Identifier, see
1182
+ http://pubs.acs.org/epub/piius.htm
1183
+ or
1184
+ http://www.aip.org/epub/piipr.html
1185
+ pmid - PubMed Central identifier (see
1186
+ www.ncbi.nlm.nih.gov/entrez/
1187
+ query.fcgi?db=PubMed)
1188
+ publisher-id
1189
+ - Publisher's identifier such
1190
+ as an 'article-id', 'artnum',
1191
+ 'identifier', 'article- number',
1192
+ 'pub-id', etc.
1193
+ sici - Serial Item and Contribution
1194
+ Identifier (SICI). A journal
1195
+ article may have more than one
1196
+ SICI, one for a print version and
1197
+ one for an electronic version. -->
1198
+ <!ENTITY % volume-id-atts
1199
+ "pub-id-type
1200
+ CDATA #IMPLIED" >
1201
+
1202
+
1203
+ <!-- ============================================================= -->
1204
+ <!-- ELEMENT USED BY MORE THAN ONE CLASS -->
1205
+ <!-- ============================================================= -->
1206
+
1207
+
1208
+ <!-- ============================================================= -->
1209
+ <!-- COMMON METADATA/BIBLIOGRAPHIC ELEMENTS -->
1210
+ <!-- ============================================================= -->
1211
+
1212
+
1213
+ <!-- ARTICLE TITLE -->
1214
+ <!-- The title of the article in the language
1215
+ in which the article was originally
1216
+ published
1217
+ Remarks: The related element Translated Title
1218
+ <trans-title> should be used for a
1219
+ translation of the article into another
1220
+ language, for example, to hold the English
1221
+ version of a Japanese article title. -->
1222
+ <!ELEMENT article-title
1223
+ (#PCDATA %title-elements;)* >
1224
+ <!-- xml:lang The language in which the value of the
1225
+ element is expressed. Recommended best
1226
+ practice is to use values as defined in
1227
+ RFC 1766, typically 2-letter language
1228
+ codes such as "FR" (French), "EN" (English),
1229
+ and "DE" (German). These values are NOT
1230
+ case sensitive, so "EN" = "en". The values
1231
+ may include hyphenated differentiations such
1232
+ as "EN-AU" (Australian English) and "EN-US"
1233
+ (United States English). -->
1234
+ <!ATTLIST article-title
1235
+ xml:lang NMTOKEN #IMPLIED >
1236
+
1237
+
1238
+ <!-- AFFILIATION ELEMENTS -->
1239
+ <!-- Elements for use in the <aff> element -->
1240
+ <!ENTITY % aff-elements "| %address.class; | %address-link.class; |
1241
+ %article-link.class; | %break.class; |
1242
+ %emphasis.class; | %label.class; |
1243
+ %simple-link.class; | %subsup.class;" >
1244
+
1245
+
1246
+ <!-- AFFILIATION -->
1247
+ <!-- Name of a institution or organization such as
1248
+ a university or corporation.
1249
+ Authoring and Conversion Note: In a typical
1250
+ case, the "id" attribute will be pointed to
1251
+ by one or more contributors.
1252
+ Conversion Note: Any explicitly tagged numbers
1253
+ or symbols for author linkages should be
1254
+ discarded, as the linkage will be recreated
1255
+ from the "id" connection.
1256
+ Authoring Note: While this element
1257
+ contains an optional Label element, the
1258
+ Label element should be included only in
1259
+ those circumstances where a formatting
1260
+ override is needed; Label should NOT
1261
+ be used in the ordinary course of
1262
+ tagging. -->
1263
+ <!ELEMENT aff (#PCDATA %aff-elements;)* >
1264
+ <!-- id Unique identifier so that the affiliated
1265
+ institution may be referenced, for example
1266
+ by a contributor
1267
+ rid May be used to point to affiliation-related
1268
+ information within the document
1269
+ -->
1270
+ <!ATTLIST aff
1271
+ %aff-atts; >
1272
+
1273
+
1274
+ <!-- COLLABORATIVE (GROUP) AUTHOR ELEMENTS -->
1275
+ <!-- Elements for use in the <collab> element
1276
+ DESIGN NOTE: All inline mixes begin with an
1277
+ OR bar, but since %simple-text; is an inline
1278
+ mix, the OR bar is already there.
1279
+ DESIGN NOTE: All inline mixes begin with an
1280
+ OR bar, but since %simple-text; is an inline
1281
+ mix, the OR bar is already there. -->
1282
+ <!ENTITY % collab-elements
1283
+ "%simple-text; | %address-link.class; |
1284
+ %simple-link.class;" >
1285
+
1286
+
1287
+ <!-- COLLABORATIVE (GROUP) AUTHOR -->
1288
+ <!-- Used for groups of authors credited under
1289
+ one name, either as a collaboration in the
1290
+ strictest sense, or when an organization,
1291
+ institution, or corporation is the group.
1292
+ Remarks: When an author is an organization
1293
+ rather than a person, use the <collab>
1294
+ element rather than <surname>, for
1295
+ example:
1296
+ <collab>Aardvark Institute</collab>
1297
+ -->
1298
+ <!ELEMENT collab (#PCDATA %collab-elements;)* >
1299
+ <!-- collab-type
1300
+ The type or role of the collaborators,
1301
+ what function did they play in the
1302
+ publication.
1303
+ Suggested values include:
1304
+ assignee
1305
+ - Group or company to whom a patent
1306
+ is awarded
1307
+ authors - Content creators
1308
+ editors - Content editors
1309
+ compilers
1310
+ - Put together a composite work
1311
+ from multiple sources
1312
+ guest-editors
1313
+ - A group of editors that have been
1314
+ invited to edit all or part of a
1315
+ work
1316
+ inventors
1317
+ - Idea, software, or machine
1318
+ creators
1319
+ translators
1320
+ - Translated the cited work from
1321
+ one language into another
1322
+ one language into another
1323
+ id unique identifier so that the collaboration
1324
+ can be referenced
1325
+ xlink:href Provides an address or identifier of the
1326
+ object to which the link points, for
1327
+ example a URI or a filename. -->
1328
+ <!ATTLIST collab
1329
+ %collab-atts; >
1330
+
1331
+
1332
+ <!-- CONFERENCE DATE ELEMENTS -->
1333
+ <!-- Elements for use in the <conf-date> element-->
1334
+ <!ENTITY % conf-date-elements
1335
+ " " >
1336
+
1337
+
1338
+ <!-- CONFERENCE DATE -->
1339
+ <!-- The date(s) on which the conference was held.
1340
+ Conference dates in journal headers are
1341
+ traditionally stored in one of two forms:
1342
+ as a single date ("May 1906") or as the
1343
+ first day and last day of the conference.
1344
+ Both types should be stored in this element;
1345
+ the dates that come from separate first and
1346
+ last elements should be combined:
1347
+ <conf-start>August 4, 2002</conf-start>
1348
+ <conf-end>August 9, 2002<conf-end>
1349
+ should become:
1350
+ <conf-date>August 4, 2002 - August 9,
1351
+ 2002</conf-date>
1352
+ -->
1353
+ <!ELEMENT conf-date (#PCDATA %conf-date-elements;)* >
1354
+
1355
+
1356
+ <!-- CONFERENCE LOCATION ELEMENTS -->
1357
+ <!-- Elements for use in the <conf-loc> element
1358
+ DESIGN NOTE: All inline mixes begin with an
1359
+ OR bar, but since %simple-text; is an inline
1360
+ mix, the OR bar is already there. -->
1361
+ <!ENTITY % conf-loc-elements
1362
+ "%simple-text;" >
1363
+
1364
+
1365
+ <!-- CONFERENCE LOCATION -->
1366
+ <!-- The physical location(s) of the conference.
1367
+ This may include a city, a country, or a
1368
+ campus or organization location if that is
1369
+ the only location available.
1370
+ Authoring and Conversion Note: If the
1371
+ conference is in the United States, the
1372
+ state should also be provided. A specific
1373
+ venue or address (e.g. conference hotel)
1374
+ should not be provided unless there is no
1375
+ other location information. -->
1376
+ <!ELEMENT conf-loc (#PCDATA %conf-loc-elements;)* >
1377
+
1378
+
1379
+ <!-- CONFERENCE NAME ELEMENTS -->
1380
+ <!-- Elements for use in the <conf-name> element.
1381
+ DESIGN NOTE: All inline mixes begin with an
1382
+ OR bar, but since %simple-text; is an inline
1383
+ mix, the OR bar is already there. -->
1384
+ <!ENTITY % conf-name-elements
1385
+ "%simple-text;" >
1386
+
1387
+
1388
+ <!-- CONFERENCE NAME -->
1389
+ <!-- The full name of the conference, including any
1390
+ qualifiers such as "43rd Annual". When the
1391
+ name includes the year of the conference,
1392
+ (e.g. "Extreme 2002"), the year should appear
1393
+ in both the conference Name and the Conference
1394
+ Date elements. -->
1395
+ <!ELEMENT conf-name (#PCDATA %conf-name-elements;)* >
1396
+
1397
+
1398
+ <!-- COPYRIGHT STATEMENT MODEL -->
1399
+ <!-- Content model for <copyright-statement> -->
1400
+ <!ENTITY % copyright-statement-elements
1401
+ "| %address-link.class;| %emphasis.class; |
1402
+ %subsup.class;" >
1403
+
1404
+
1405
+ <!-- COPYRIGHT STATEMENT -->
1406
+ <!-- Copyright notice or statement, suitable for
1407
+ printing or display. Within the statement the
1408
+ copyright year should be identified, if
1409
+ expected to be displayed. -->
1410
+ <!ELEMENT copyright-statement
1411
+ (#PCDATA %copyright-statement-elements;)* >
1412
+
1413
+
1414
+ <!-- OBJECT IDENTIFIER -->
1415
+ <!-- Used to record an identifier such as a DOI
1416
+ for an interior element such as an <abstract>
1417
+ or <figure>.
1418
+ Remarks: Such an identifier may be created
1419
+ by a publisher or archive, and there is no
1420
+ requirement that identifiers be unique. -->
1421
+ <!ELEMENT object-id (#PCDATA) >
1422
+ <!-- id-type Indicates what type of identifier this is or
1423
+ who assigned the identifier, for example,
1424
+ "pub-id" for a publisher's non-DOI
1425
+ identifier or "DOI" for a Digital Object
1426
+ Identifier.
1427
+ In Archival this is a CDATA attribute but
1428
+ suggested values include:
1429
+ archive Identifier assigned by an archive
1430
+ or other repository
1431
+ aggregator
1432
+ Assigned by a data aggregator
1433
+ doi Digital Object Identifier
1434
+ index Assigned by an abstracting or
1435
+ indexing service
1436
+ pmc Assigned by PubMed Central
1437
+ publisher-id
1438
+ Non-DOI Identifier assigned by
1439
+ the content publisher -->
1440
+ <!ATTLIST object-id
1441
+ %object-id-atts; >
1442
+
1443
+
1444
+ <!-- JOURNAL IDENTIFIER ATTRIBUTES -->
1445
+ <!-- Attribute list for journal identifier
1446
+ <journal-id> element -->
1447
+ <!-- Indicates whose identifier this is, for
1448
+ example, "pub-id" for a publisher's
1449
+ identifier or "pmc" for PubMed Central.
1450
+ Suggested values include:
1451
+ archive Identifier assigned by an archive
1452
+ or other repository
1453
+ aggregator
1454
+ Identifier assigned by a data
1455
+ aggregator
1456
+ doi Digital Object Identifier for the
1457
+ entire journal, not just for the
1458
+ article (rare)
1459
+ index Identifier assigned by an
1460
+ abstracting or indexing service
1461
+ pmc Identifier assigned by PubMed Central
1462
+ for example, the pmc journal
1463
+ abbreviation such as "pnas", "mbc",
1464
+ "nar", "molcellb", which may be the
1465
+ same as the abbreviated journal
1466
+ title
1467
+ publisher-id
1468
+ Identifier assigned by the content
1469
+ publisher, for example, "MOLEC",
1470
+ "MOLCEL"
1471
+ nlm-ta Identifier assigned by the
1472
+ PubMed/Medline, and is typically
1473
+ the journal abbreviation, for
1474
+ example, "Mol Biol Cell", "Nucleic
1475
+ Acids Res", which may be the
1476
+ same as the abbreviated journal
1477
+ title. -->
1478
+ <!ENTITY % journal-id-atts
1479
+ "journal-id-type
1480
+ CDATA #IMPLIED " >
1481
+
1482
+
1483
+ <!-- ISSUE TITLE ELEMENTS -->
1484
+ <!-- Elements for use with data characters inside
1485
+ the model for the <issue> element -->
1486
+ <!ENTITY % issn-elements
1487
+ " " >
1488
+
1489
+
1490
+ <!-- ISSN -->
1491
+ <!-- International Standard Serial Number -->
1492
+ <!ELEMENT issn (#PCDATA %issn-elements;) >
1493
+ <!-- Used to record the type of publication, for
1494
+ which this ISSN was issued, for example,
1495
+ a print-only publication versus
1496
+ an electronic-only publication, in any of
1497
+ several life stages.
1498
+ Suggested values include:
1499
+ epub - Electronic publication
1500
+ ppub - Print publication
1501
+ epub-ppub - Published in both print and
1502
+ electronic form
1503
+ epreprint - Electronic preprint
1504
+ dissemination
1505
+ ppreprint - Print preprint dissemination
1506
+ ecorrected - Corrected in electronic
1507
+ pcorrected - Corrected in print
1508
+ eretracted - Retracted in electronic
1509
+ pretracted - Retracted in print
1510
+ -->
1511
+ <!ATTLIST issn
1512
+ %issn-atts; >
1513
+
1514
+
1515
+ <!-- ISSUE TITLE ELEMENTS -->
1516
+ <!-- Elements for use with data characters inside
1517
+ the model for the <issue> element -->
1518
+ <!ENTITY % issue-elements
1519
+ "%just-rendition;" >
1520
+
1521
+
1522
+ <!-- ISSUE NUMBER -->
1523
+ <!-- NEW DEFINITION FOR RELEASE 2.0:
1524
+ The issue number, issue name, or other
1525
+ identifier of an issue of a journal that
1526
+ is displayed or printed with the issue.
1527
+ This is not the machine-readable internal
1528
+ identifier such as a DOI or SICI, that is
1529
+ the related element <issue-id> -->
1530
+ <!ELEMENT issue (#PCDATA %issue-elements;)* >
1531
+
1532
+
1533
+ <!-- ISSUE IDENTIFIER -->
1534
+ <!-- Used to record an identifier such as a DOI
1535
+ that describes an entire issue of a
1536
+ journal -->
1537
+ <!ELEMENT issue-id (#PCDATA) >
1538
+ <!-- pub-id-type
1539
+ Indicates what type of identifier this is or
1540
+ who assigned the identifier, for example,
1541
+ "pub-id" for a publisher's non-DOI
1542
+ identifier or "DOI" for a Digital Object
1543
+ Identifier.
1544
+ In Archival this is a CDATA attribute but
1545
+ suggested values include:
1546
+ archive Identifier assigned by an archive
1547
+ or other repository
1548
+ aggregator
1549
+ Assigned by a data aggregator
1550
+ doi Digital Object Identifier
1551
+ index Assigned by an abstracting or
1552
+ indexing service
1553
+ pmc Assigned by PubMed Central
1554
+ publisher-id
1555
+ Non-DOI Identifier assigned by
1556
+ the content publisher -->
1557
+ <!ATTLIST issue-id
1558
+ %issue-id-atts; >
1559
+
1560
+
1561
+ <!-- ISSUE TITLE ELEMENTS -->
1562
+ <!-- Elements for use in the <issue-title> element
1563
+ -->
1564
+ <!ENTITY % issue-title-elements
1565
+ "" >
1566
+
1567
+
1568
+ <!-- ISSUE TITLE -->
1569
+ <!-- Used to record the theme or special issue
1570
+ title for an issue of the journal -->
1571
+ <!ELEMENT issue-title (#PCDATA %issue-title-elements;)* >
1572
+
1573
+
1574
+ <!-- ROLE ELEMENTS -->
1575
+ <!-- The elements that can be included along with
1576
+ data characters inside the content model of
1577
+ a <role>
1578
+ DESIGN NOTE: All inline mixes begin with an
1579
+ OR bar; since %rendition-plus; is an
1580
+ inline mix, the OR bar is already there. -->
1581
+ <!ENTITY % role-elements
1582
+ "%rendition-plus;" >
1583
+
1584
+
1585
+ <!-- ROLE OR FUNCTION TITLE OF CONTRIBUTOR -->
1586
+ <!-- A title or the role of a contributor
1587
+ (such as an author) in this work. For example,
1588
+ Editor-in-Chief, Contributor, Chief
1589
+ Scientist, Photographer, Research Associate,
1590
+ etc.
1591
+ Remarks: Information on the role or type of
1592
+ contribution is collected in two places,
1593
+ in the "contrib-type" attribute on the
1594
+ Contributor element and in the Role element.
1595
+ For example, the Contributor attribute might
1596
+ have a value of "editor", while the content
1597
+ of the role element could be "Associate
1598
+ Editor". As another example, the contributor
1599
+ attribute might be "author" and the role
1600
+ element might be "Principle Author".
1601
+ The <role> element is also more likely to
1602
+ appear on screen or in print than the
1603
+ contributor attribute value. -->
1604
+ <!ELEMENT role (#PCDATA %role-elements;)* >
1605
+
1606
+
1607
+ <!-- VOLUME NUMBER ELEMENTS -->
1608
+ <!-- The elements that can be included along with
1609
+ data characters inside the content model of
1610
+ a <volume> -->
1611
+ <!ENTITY % volume-elements
1612
+ "%just-rendition; " >
1613
+
1614
+
1615
+ <!-- VOLUME NUMBER -->
1616
+ <!-- NEW DEFINITION FOR RELEASE 2.0:
1617
+ The volume number, volume name, or other
1618
+ identifier of an volume of a journal that
1619
+ is displayed or printed with the volume.
1620
+ This is not the machine-readable internal
1621
+ identifier such as a DOI or SICI, that is
1622
+ the related element <volume-id> -->
1623
+ <!ELEMENT volume (#PCDATA %volume-elements;)* >
1624
+
1625
+
1626
+ <!-- TRANSLATED TITLE -->
1627
+ <!-- An alternate version of the title that has
1628
+ been translated into a language other than
1629
+ that of the article title <article-title>
1630
+ Remarks: The related element Article Title
1631
+ <article-title> should be used for the title
1632
+ of the article in the original language in
1633
+ which it was published, this element used
1634
+ for a translation of that title, for example
1635
+ the English version of a Japanese article. -->
1636
+ <!ELEMENT trans-title (#PCDATA %title-elements;)* >
1637
+ <!-- xml:lang The language in which the value of the
1638
+ element is expressed. Recommended best
1639
+ practice is to use values as defined in
1640
+ RFC 1766, typically 2-letter language
1641
+ codes such as "FR" (French), "EN" (English),
1642
+ and "DE" (German). These values are NOT
1643
+ case sensitive, so "EN" = "en". The values
1644
+ may include hyphenated differentiations such
1645
+ as "EN-AU" (Australian English) and "EN-US"
1646
+ (United States English).
1647
+ Authoring and Conversion Note: For the
1648
+ Translated Title element, the xml:lang
1649
+ attribute should always be set if the
1650
+ value is known. The only reason the
1651
+ attribute was not made #REQUIRED was that
1652
+ there may be cases where the language is
1653
+ not known. -->
1654
+ <!ATTLIST trans-title
1655
+ xml:lang NMTOKEN #IMPLIED >
1656
+
1657
+
1658
+ <!-- VOLUME IDENTIFIER ELEMENTS -->
1659
+ <!-- The elements that can be included along with
1660
+ data characters inside the content model of
1661
+ a <volume-id> -->
1662
+ <!ENTITY % volume-id-elements
1663
+ "%just-rendition; " >
1664
+
1665
+
1666
+ <!-- VOLUME IDENTIFIER -->
1667
+ <!-- Used to record an identifier such as a DOI
1668
+ that describes an entire volume of a
1669
+ journal.
1670
+ REMARKS: The related elements <volume>
1671
+ holds the volume number as published
1672
+ with the journal. -->
1673
+ <!ELEMENT volume-id (#PCDATA %volume-id-elements;)* >
1674
+ <!-- pub-id-type
1675
+ Indicates what type of identifier this is or
1676
+ who assigned the identifier, for example,
1677
+ "pub-id" for a publisher's non-DOI
1678
+ identifier or "DOI" for a Digital Object
1679
+ Identifier.
1680
+ In Archival this is a CDATA attribute but
1681
+ suggested values include:
1682
+ archive Identifier assigned by an archive
1683
+ or other repository
1684
+ aggregator
1685
+ Assigned by a data aggregator
1686
+ doi Digital Object Identifier
1687
+ index Assigned by an abstracting or
1688
+ indexing service
1689
+ pmc Assigned by PubMed Central
1690
+ publisher-id
1691
+ Non-DOI Identifier assigned by
1692
+ the content publisher -->
1693
+ <!ATTLIST volume-id
1694
+ %volume-id-atts; >
1695
+
1696
+
1697
+ <!-- ============================================================= -->
1698
+ <!-- COMMON METADATA ELEMENTS CONTINUED -->
1699
+ <!-- PUBLISHER IDENTIFICATION ELEMENTS -->
1700
+ <!-- (COMMON ARTICLE METADATA/BIBLIOGRAPHIC) -->
1701
+ <!-- Used in article metadata and also inside -->
1702
+ <!-- a bibliographic reference (citation) -->
1703
+ <!-- ============================================================= -->
1704
+
1705
+
1706
+ <!-- ET AL ELEMENTS -->
1707
+ <!-- The elements that can be included along with
1708
+ data characters inside the content model of
1709
+ an <etal> -->
1710
+ <!ENTITY % etal-elements
1711
+ "%just-rendition; " >
1712
+
1713
+
1714
+ <!-- ET AL CONTENT MODEL -->
1715
+ <!-- The content model for the <etal> element -->
1716
+ <!ENTITY % etal-model "(#PCDATA %etal-elements;)*" >
1717
+
1718
+
1719
+ <!-- ET AL -->
1720
+ <!-- Although most journals modeled this as an
1721
+ EMPTY element, typically used to generate
1722
+ the text "et al." in a stylesheet, some
1723
+ journal DTDs (Blackwell's, for example) expect
1724
+ content for this element, with such text as
1725
+ "Associates, coworkers, and colleagues". -->
1726
+ <!ELEMENT etal %etal-model; >
1727
+
1728
+
1729
+ <!-- PUBLISHER -->
1730
+ <!-- Who published the work -->
1731
+ <!ELEMENT publisher (publisher-name, publisher-loc?) >
1732
+
1733
+
1734
+ <!-- PUBLISHER'S NAME ELEMENTS -->
1735
+ <!-- The elements that can be included along with
1736
+ data characters inside the content model of
1737
+ a <publisher-name>
1738
+ DESIGN NOTE: All inline mixes begin with an
1739
+ OR bar; since %just-rendition; is an
1740
+ inline mix, the OR bar is already there -->
1741
+ <!ENTITY % publisher-name-elements
1742
+ "%just-rendition; " >
1743
+
1744
+
1745
+ <!-- PUBLISHER'S NAME -->
1746
+ <!-- Name of the publisher of the work -->
1747
+ <!ELEMENT publisher-name
1748
+ (#PCDATA %publisher-name-elements;)* >
1749
+
1750
+
1751
+ <!-- PUBLISHER'S LOCATION ELEMENTS -->
1752
+ <!-- Elements for use in the Publisher Location
1753
+ <publisher-loc> element -->
1754
+ <!ENTITY % publisher-loc-elements
1755
+ "| %address.class; | %address-link.class; |
1756
+ %emphasis.class; | %subsup.class;" >
1757
+
1758
+
1759
+ <!-- PUBLISHER'S LOCATION -->
1760
+ <!-- Place of publication, usually a city such
1761
+ as New York or London -->
1762
+ <!ELEMENT publisher-loc
1763
+ (#PCDATA %publisher-loc-elements;)* >
1764
+
1765
+
1766
+ <!-- ============================================================= -->
1767
+ <!-- COMMON METADATA ELEMENTS CONTINUED -->
1768
+ <!-- PAGE NUMBERING ELEMENTS -->
1769
+ <!-- ============================================================= -->
1770
+
1771
+
1772
+ <!-- FIRST PAGE ATTRIBUTES -->
1773
+ <!-- seq Used for sequence number or letter for
1774
+ journals (such as continuous makeup journals)
1775
+ with more than one article starting on the
1776
+ same page -->
1777
+ <!ENTITY % fpage-atts
1778
+ "seq CDATA #IMPLIED" >
1779
+
1780
+ <!-- FIRST PAGE -->
1781
+ <!-- The page number on which the article starts,
1782
+ for print journals that have page numbers -->
1783
+ <!ELEMENT fpage (#PCDATA) >
1784
+ <!-- seq Used for sequence number or letter for
1785
+ journals (such as continuous makeup journals)
1786
+ with more than one article starting on the
1787
+ same page -->
1788
+ <!ATTLIST fpage
1789
+ %fpage-atts; >
1790
+
1791
+
1792
+ <!-- LAST PAGE -->
1793
+ <!-- The page number on which the article ends,
1794
+ for print journals that have page numbers -->
1795
+ <!ELEMENT lpage (#PCDATA) >
1796
+
1797
+
1798
+ <!-- PAGE RANGES -->
1799
+ <!-- A container element for additional page
1800
+ information (TO BE USED TO SUPPLEMENT AND
1801
+ NOT TO REPLACE <fpage> and <lpage>) to record
1802
+ discontinuous pages ranges such as
1803
+ "8-11, 14-19, 40"
1804
+ meaning that the article begins on page
1805
+ 8, runs 8 through 11, skips to pages 14
1806
+ through 19, and concludes on page 40. -->
1807
+ <!ELEMENT page-range (#PCDATA) >
1808
+
1809
+
1810
+ <!-- ELECTRONIC LOCATION IDENTIFIER ATTRIBUTES -->
1811
+ <!-- seq Used for sequence number or letter for
1812
+ journals (such as continuous makeup journals)
1813
+ so that the publisher's sequence of articles
1814
+ can be preserved, even for electronic
1815
+ publications. -->
1816
+ <!ENTITY % elocation-id-atts
1817
+ "seq CDATA #IMPLIED" >
1818
+
1819
+
1820
+ <!-- ELECTRONIC LOCATION IDENTIFIER -->
1821
+ <!-- Used to identify an article that
1822
+ does not have traditional page numbers.
1823
+ For a printed article, when citations are
1824
+ sent through the Medline matcher to be turned
1825
+ into live links or when the metadata about an
1826
+ article is collected for complete
1827
+ identification, the first page number (and
1828
+ sometimes also the last page number) of the
1829
+ article is recorded to help indicate which
1830
+ article is being referenced. Electronic only
1831
+ journals have no page numbers, so this
1832
+ element is used as the equivalent identifier,
1833
+ the "electronic page number" that helps to
1834
+ identify the article. The value could be an
1835
+ article identifier, a doi, etc., for
1836
+ example, "E70".
1837
+ Remarks: This element is more accurately an
1838
+ electronic identifier, and it was considered
1839
+ renaming this element to that. The purpose
1840
+ of the name is to be a parallel with the
1841
+ <fpage>...<lpage> model. When neither first
1842
+ page or last page is appropriate, because
1843
+ the electronic journal has no pages, the
1844
+ <elocation-id> element is used instead. -->
1845
+ <!ELEMENT elocation-id (#PCDATA) >
1846
+ <!-- seq Used for sequence number or letter for
1847
+ journals (such as continuous makeup journals)
1848
+ with more than one article starting on the
1849
+ same page -->
1850
+ <!ATTLIST elocation-id
1851
+ %elocation-id-atts; >
1852
+
1853
+
1854
+ <!-- ============================================================= -->
1855
+ <!-- CITATION (BIBLIOGRAPHIC REFERENCE) -->
1856
+ <!-- ============================================================= -->
1857
+
1858
+
1859
+ <!-- CITATION ELEMENTS -->
1860
+ <!-- Content model for the <citation> element.
1861
+ DESIGN NOTE: All inline mixes begin with an
1862
+ OR bar. -->
1863
+ <!ENTITY % citation-elements
1864
+ "| %emphasis.class; | %inline-display.class; |
1865
+ %inline-math.class; | %label.class; |
1866
+ %phrase.class; | %references.class; |
1867
+ %subsup.class;" >
1868
+
1869
+
1870
+ <!-- CITATION -->
1871
+ <!-- A citation is a description of a work, such
1872
+ as a journal article, book, or personal
1873
+ communication, that is cited in the text of
1874
+ the article. Although the DTD does not
1875
+ enforce it, a citation to a journal article
1876
+ *should* be tagged with as many as possible
1877
+ of the following, so that PubMed Central or
1878
+ other matching processing can make the
1879
+ citation into a live link:
1880
+ source The MEDLINE abbreviation of the
1881
+ journal name
1882
+ article-title
1883
+ Title of the article
1884
+ volume Volume of the journal
1885
+ issue Issue of the journal
1886
+ fpage Page number on which the article
1887
+ starts
1888
+ name Of an author or editor
1889
+ year Year of publication
1890
+ month Month of publication (if present)
1891
+ day Date of publication (if present)
1892
+ The other elements may be tagged if
1893
+ desired. The <title> element may be used
1894
+ for titles of books, conference proceedings,
1895
+ etc.
1896
+ Authoring and Conversion Note: In order to
1897
+ make citations into live links, as much
1898
+ of the author and date information as is
1899
+ available should be preserved. The most
1900
+ important date tag is year, and it should
1901
+ always be tagged if possible:
1902
+ <year>2003</year>
1903
+ The <day> and <month> tags will be used
1904
+ more rarely; they are provided because some
1905
+ of the citation matching services can use
1906
+ the month and the day if they are available.
1907
+ -->
1908
+ <!ELEMENT citation (#PCDATA %citation-elements;)* >
1909
+ <!-- citation-type
1910
+ Defines the type of work being referenced.
1911
+ Suggested values include:
1912
+ book Book
1913
+ personal-communication
1914
+ Informal or personal
1915
+ communication, such as a
1916
+ phone call or an email
1917
+ message
1918
+ conf-proceedings
1919
+ Conference proceedings
1920
+ discussion Discussion among a group in
1921
+ some forum - public, private,
1922
+ or electronic, which may or
1923
+ may not be moderated
1924
+ gov Government publication
1925
+ journal Journal article
1926
+ list Listserv
1927
+ other None of the listed types
1928
+ patent Patent or patent application
1929
+ thesis Work written as part of the
1930
+ completion of an advanced
1931
+ degree
1932
+ web Website
1933
+ id Unique identifier so the element may be
1934
+ referenced
1935
+ xlink:href Provides an address or identifier of the
1936
+ object to which the link points, for
1937
+ example a URI or a filename -->
1938
+ <!ATTLIST citation
1939
+ %citation-atts; >
1940
+
1941
+
1942
+ <!-- ============================================================= -->
1943
+ <!-- ADDRESS ELEMENTS (BIBLIOGRAPHIC) -->
1944
+ <!-- ============================================================= -->
1945
+
1946
+
1947
+ <!-- ADDRESS MODEL -->
1948
+ <!-- Content model for the <address> element -->
1949
+ <!ENTITY % address-model
1950
+ "(%address.class; | %address-link.class;)*" >
1951
+
1952
+
1953
+ <!-- ADDRESS/CONTACT INFORMATION -->
1954
+ <!-- Wrapper element for contact information such
1955
+ as address, phone, fax, email, url, country,
1956
+ etc. -->
1957
+ <!ELEMENT address %address-model; >
1958
+ <!-- id Unique identifier so the element may be
1959
+ referenced -->
1960
+ <!ATTLIST address
1961
+ id ID #IMPLIED >
1962
+
1963
+
1964
+ <!-- ADDRESS LINE ELEMENTS -->
1965
+ <!-- Elements for use in the <addr-line> element-->
1966
+ <!ENTITY % addr-line-elements
1967
+ "%simple-text;" >
1968
+
1969
+
1970
+ <!-- ADDRESS LINE -->
1971
+ <!-- One line in an address -->
1972
+ <!-- Conversion Note: If the address is
1973
+ undifferentiated data characters, the entire
1974
+ address may be inside one of these elements.
1975
+ -->
1976
+ <!ELEMENT addr-line (#PCDATA %addr-line-elements;)* >
1977
+
1978
+
1979
+ <!-- COUNTRY: IN AN ADDRESS -->
1980
+ <!ELEMENT country (#PCDATA) >
1981
+
1982
+
1983
+ <!-- EMAIL ADDRESS ELEMENTS -->
1984
+ <!-- Elements to be mixed with #PCDATA inside the
1985
+ <email> element -->
1986
+ <!ENTITY % email-elements
1987
+ " " >
1988
+
1989
+
1990
+ <!-- EMAIL ADDRESS -->
1991
+ <!ELEMENT email (#PCDATA %email-elements;)* >
1992
+ <!-- xlink:href Provides an address or identifier of the
1993
+ object to which the link points, for
1994
+ example a URI or a filename -->
1995
+ <!ATTLIST email
1996
+ %might-link-atts; >
1997
+
1998
+
1999
+ <!-- FAX NUMBER ELEMENTS -->
2000
+ <!-- The elements that can be included along with
2001
+ data characters inside the content model of
2002
+ a <fax> -->
2003
+ <!ENTITY % fax-elements
2004
+ "%just-rendition; " >
2005
+
2006
+
2007
+ <!-- FAX NUMBER: IN AN ADDRESS -->
2008
+ <!ELEMENT fax (#PCDATA %fax-elements;)* >
2009
+
2010
+
2011
+ <!-- INSTITUTION NAME ELEMENTS -->
2012
+ <!-- Elements for use in the <institution>
2013
+ element -->
2014
+ <!ENTITY % institution-elements
2015
+ "| %break.class; | %emphasis.class; |
2016
+ %subsup.class;" >
2017
+
2018
+
2019
+ <!-- INSTITUTION NAME: IN AN ADDRESS -->
2020
+ <!-- Name of a institution or organization such as
2021
+ a university or corporation -->
2022
+
2023
+ <!ELEMENT institution (#PCDATA %institution-elements;)* >
2024
+ <!-- id Unique identifier so the element may be
2025
+ referenced
2026
+ xlink:href Provides an address or identifier of the
2027
+ object to which the link points, for
2028
+ example a URI or a filename -->
2029
+ <!ATTLIST institution
2030
+ id ID #IMPLIED
2031
+ %might-link-atts; >
2032
+
2033
+
2034
+ <!-- PHONE NUMBER ELEMENTS -->
2035
+ <!-- The elements that can be included along with
2036
+ data characters inside the content model of
2037
+ a <phone number>
2038
+ DESIGN NOTE: All inline mixes begin with an
2039
+ OR bar, but since %just-rendition; is an
2040
+ inline mix, the OR bar is already there. -->
2041
+ <!ENTITY % phone-elements
2042
+ "%just-rendition;" >
2043
+
2044
+
2045
+ <!-- PHONE NUMBER: IN AN ADDRESS -->
2046
+ <!-- A callable phone number in some telephone or
2047
+ wireless system somewhere in the world.
2048
+ Typically includes area code; may include
2049
+ country extension, especially for non-US. -->
2050
+ <!ELEMENT phone (#PCDATA %phone-elements;)* >
2051
+
2052
+
2053
+ <!-- URI ELEMENTS -->
2054
+ <!-- The elements that can be included along with
2055
+ data characters inside the content model of
2056
+ a <uri>
2057
+ Design Note: This PE begins with an OR
2058
+ bar because %just-rendition; begins with an
2059
+ OR bar. -->
2060
+ <!ENTITY % uri-elements
2061
+ "%just-rendition;" >
2062
+
2063
+
2064
+ <!-- URI -->
2065
+ <!-- URI such as a URL that may be used as a
2066
+ live link, typically naming a website, such
2067
+ as:
2068
+ <url>http://www.mulberrytech.com</url>
2069
+ Alternatively the element content may name
2070
+ the URL, e.g., "Mulberry's Website" and the
2071
+ "xlink:href" attribute may hold the real
2072
+ URL.
2073
+ <url xlink:href="http://www.mulberrytech.
2074
+ com">Mulberry's Website</url>
2075
+ Related Elements: A URI used outside the
2076
+ context of an address of contributor should
2077
+ be tagged as an External Link <ext-link> -->
2078
+ <!ELEMENT uri (#PCDATA %uri-elements;)* >
2079
+
2080
+ <!ATTLIST uri
2081
+ %might-link-atts; >
2082
+
2083
+
2084
+ <!-- ============================================================= -->
2085
+ <!-- DATE ELEMENTS (PUBLICATION HISTORY) -->
2086
+ <!-- ============================================================= -->
2087
+
2088
+
2089
+ <!-- DATE -->
2090
+ <!-- The elements <day>, <month>, and <year> should
2091
+ ALWAYS be numeric values. The date may be
2092
+ represented as a string in <string-date>, but
2093
+ the numeric values should be present whenever
2094
+ possible. -->
2095
+ <!ELEMENT date %date-model; >
2096
+ <!-- date-type Attribute should only be used if the date
2097
+ is one of the known types, otherwise omit
2098
+ the attribute. Values are:
2099
+ accepted - Date manuscript was
2100
+ accepted
2101
+ received - Date manuscript received
2102
+ rev-request - Date revisions were
2103
+ requested or manuscript
2104
+ was returned
2105
+ rev-recd - Date revised manuscript
2106
+ was received -->
2107
+ <!ATTLIST date
2108
+ date-type (%date-types;) #IMPLIED >
2109
+
2110
+
2111
+ <!-- DAY -->
2112
+ <!-- The numeric value of a day of the month, used
2113
+ in both article metadata and inside a citation,
2114
+ in two digits as it would be stated in the "DD"
2115
+ in an international date format YYYY-MM-DD, for
2116
+ example "03", "25". -->
2117
+ <!ELEMENT day (#PCDATA) >
2118
+
2119
+
2120
+ <!-- MONTH -->
2121
+ <!-- Names one of the months of the year. Used in
2122
+ both article metadata and inside a citation,
2123
+ this element may contain a full month
2124
+ "December", an abbreviation "Dec", or,
2125
+ preferably, a numeric month such as "12".
2126
+ Authoring and Conversion Note: For ease in
2127
+ comparisons and searching, many archives
2128
+ prefer that months be converted to numeric
2129
+ Suggested values:
2130
+ 1 = January
2131
+ 2 = February
2132
+ 3 = March, etc. -->
2133
+ <!ELEMENT month (#PCDATA) >
2134
+
2135
+
2136
+ <!-- SEASON -->
2137
+ <!-- Season of publication, such as "Spring".
2138
+ Used in both article metadata and inside a
2139
+ citation -->
2140
+ <!ELEMENT season (#PCDATA) >
2141
+
2142
+
2143
+ <!-- YEAR -->
2144
+ <!-- Year of publication, which should be expressed
2145
+ as a 4-digit number: "1776" or "1924" -->
2146
+ <!ELEMENT year (#PCDATA) >
2147
+
2148
+
2149
+ <!-- STRING DATE ELEMENTS -->
2150
+ <!-- The elements that can be included along with
2151
+ data characters inside the content model of
2152
+ the <string-date> element -->
2153
+ <!ENTITY % string-date-elements
2154
+ " | %date-parts.class;" >
2155
+
2156
+
2157
+ <!-- DATE AS A STRING -->
2158
+ <!-- This is a representation of the date as a
2159
+ string. Usually used for dates for which
2160
+ months and years are not given, but may be
2161
+ used for any date as a string (i.e., "January,
2162
+ 2001" "Fall 2001" "March 11, 2001".
2163
+ It is better practice to tag the year
2164
+ and month as numbers with a date such
2165
+ as "January, 2001" or "March 11, 2001". -->
2166
+ <!ELEMENT string-date (#PCDATA %string-date-elements;)* >
2167
+
2168
+
2169
+ <!-- ============================================================= -->
2170
+ <!-- PERSON'S NAME ELEMENTS (BIBLIOGRAPHIC) -->
2171
+ <!-- ============================================================= -->
2172
+
2173
+
2174
+ <!-- STRING NAME ELEMENTS -->
2175
+ <!-- The elements that can be included along with
2176
+ data characters inside the content model of
2177
+ the <string-name> element -->
2178
+ <!ENTITY % string-name-elements
2179
+ " | %person-name.class;" >
2180
+
2181
+
2182
+ <!-- NAME OF PERSON (UNSTRUCTURED) -->
2183
+ <!-- Wrapper element for personal names where the
2184
+ stricter format of the <name> element cannot
2185
+ be followed. This is a very loose element,
2186
+ allowing data characters, generated text,
2187
+ and any or all of the naming elements.
2188
+ Authoring or Conversion Note: Use this
2189
+ element if the name parts are unknown or
2190
+ untagged. -->
2191
+ <!ELEMENT string-name (#PCDATA %string-name-elements;)* >
2192
+
2193
+
2194
+ <!-- NAME OF PERSON (STRUCTURED) -->
2195
+ <!-- Wrapper element for personal names.
2196
+ Authoring or Conversion Note: If the name
2197
+ parts are unknown or untagged, names should
2198
+ be placed within the <string-name> element.
2199
+ -->
2200
+ <!ELEMENT name (surname, given-names?, prefix?, suffix?) >
2201
+ <!-- name-style Used for choosing an inversion algorithm or
2202
+ for sorting or other processing functions. The
2203
+ three values and approximate meanings are:
2204
+ Value Display Sort/Inversion
2205
+ western given family family given
2206
+ eastern family given family given
2207
+ islensk given patronymic given, patronymic
2208
+ -->
2209
+ <!ATTLIST name
2210
+ name-style (western | eastern | islensk) "western" >
2211
+
2212
+
2213
+ <!-- SURNAME ELEMENTS -->
2214
+ <!-- The elements that can be included along with
2215
+ data characters inside the content model of
2216
+ a <surname>
2217
+ Design Note: This PE begins with an OR
2218
+ bar because %just-rendition; begins with an
2219
+ OR bar. -->
2220
+ <!ENTITY % surname-elements
2221
+ "%just-rendition; " >
2222
+
2223
+
2224
+ <!-- SURNAME -->
2225
+ <!-- The surname of an individual. If there is
2226
+ only one name, for example, "Cher" or
2227
+ "Pele", that is considered to be a surname
2228
+ for consistency purposes. -->
2229
+ <!ELEMENT surname (#PCDATA %surname-elements;)* >
2230
+ <!ATTLIST surname
2231
+ %surname-atts; >
2232
+
2233
+
2234
+ <!-- GIVEN (FIRST) NAMES ELEMENTS -->
2235
+ <!-- The elements that can be included along with
2236
+ data characters inside the content model of
2237
+ a <given-names> -->
2238
+ <!ENTITY % given-names-elements
2239
+ "%just-rendition;" >
2240
+
2241
+
2242
+ <!-- GIVEN (FIRST) NAMES -->
2243
+ <!-- Includes all given names for a person, such
2244
+ as the first name, middle names, maiden
2245
+ name if used as part of the married name,
2246
+ etc.) -->
2247
+ <!ELEMENT given-names (#PCDATA %given-names-elements;)* >
2248
+ <!ATTLIST given-names
2249
+ %given-names-atts; >
2250
+
2251
+
2252
+ <!-- PREFIX ELEMENTS -->
2253
+ <!-- The elements that can be included along with
2254
+ data characters inside the content model of
2255
+ a <prefix>
2256
+ Design Note: This PE begins with an OR
2257
+ bar because %just-rendition; begins with an
2258
+ OR bar. -->
2259
+ <!ENTITY % prefix-elements
2260
+ "%just-rendition;" >
2261
+
2262
+
2263
+ <!-- PREFIX -->
2264
+ <!-- Honorifics or other qualifiers that usually
2265
+ precede the surname, for example, Professor,
2266
+ Rev., President, Senator, Dr., Sir, The
2267
+ Honorable, et al. -->
2268
+ <!ELEMENT prefix (#PCDATA %prefix-elements;)* >
2269
+
2270
+
2271
+
2272
+ <!-- SUFFIX ELEMENTS -->
2273
+ <!-- The elements that can be included along with
2274
+ data characters inside the content model of
2275
+ a <suffix>
2276
+ Design Note: This PE begins with an OR bar,
2277
+ it is inside %just-rendition; -->
2278
+ <!ENTITY % suffix-elements
2279
+ "%just-rendition;" >
2280
+
2281
+
2282
+ <!-- SUFFIX -->
2283
+ <!-- Text used as a suffix to a person's name, for
2284
+ example: Sr. Jr. III, 3rd -->
2285
+ <!ELEMENT suffix (#PCDATA %suffix-elements;)* >
2286
+
2287
+
2288
+ <!-- ============================================================= -->
2289
+ <!-- EXTERNAL LINK ELEMENTS -->
2290
+ <!-- ============================================================= -->
2291
+
2292
+
2293
+ <!-- EXTERNAL LINK ELEMENTS -->
2294
+ <!-- The elements that can be included along with
2295
+ data characters inside the content model of
2296
+ an <ext-link>
2297
+ DESIGN NOTE: All inline mixes begin with an
2298
+ OR bar, but since %link-elements; is an inline
2299
+ mix, the OR bar is already there. -->
2300
+ <!ENTITY % ext-link-elements
2301
+ "%link-elements;" >
2302
+
2303
+
2304
+ <!-- EXTERNAL LINK -->
2305
+ <!-- Link to an external file, such as Medline,
2306
+ Genbank, etc. Linking may be accomplished
2307
+ using the XLink linking attributes. -->
2308
+ <!ELEMENT ext-link (#PCDATA %ext-link-elements;)* >
2309
+ <!-- ext-link-type
2310
+ Type of external link. Use this attribute
2311
+ if the type of external link is one of the
2312
+ ones below or another named type.
2313
+ Suggested values include:
2314
+ aoi Astronomical Object Identifier
2315
+ doi Digital Object Identifier
2316
+ ec Enzyme nomenclature - see
2317
+ http://www.chem.qmw.ac.uk/iubmb/enzyme/
2318
+ email An email message
2319
+ ftp File transfer protocol
2320
+ gen GenBank identifier
2321
+ genpept Translated Protein-encoding
2322
+ sequence Database
2323
+ highwire HighWire press intrajournal
2324
+ medline Medline or pubmed id
2325
+ pdb Protein data bank. See
2326
+ http://www.rcsb.org/pdb/
2327
+ pgr Plant gene register. See
2328
+ http://www.tarweed.com/pgr/
2329
+ pir Protein Information Resource
2330
+ see http://pir.georgetown.edu
2331
+ pirdb Protein Information Resource
2332
+ see http://pir.georgetown.edu
2333
+ pmc Used to link between articles
2334
+ in PubMed Central access is
2335
+ PMID
2336
+ sprot Swiss-Prot. See
2337
+ http://www.ebi.ac.uk/swissprot/
2338
+ uri Website or web service
2339
+ id Unique identifier so the element may be
2340
+ referenced
2341
+ xlink:href Provides an address or identifier of the
2342
+ object to which the link points, for
2343
+ example a URI or a filename -->
2344
+ <!ATTLIST ext-link
2345
+ %ext-link-atts; >
2346
+
2347
+
2348
+ <!-- ============================================================= -->
2349
+ <!-- STRUCTURAL ELEMENTS -->
2350
+ <!-- ============================================================= -->
2351
+
2352
+
2353
+ <!-- ATTRIBUTION ELEMENTS -->
2354
+ <!-- The elements that can be included along with
2355
+ data characters inside the content model of
2356
+ an attribution
2357
+ DESIGN NOTE: All inline mixes begin with an
2358
+ OR bar, but since %simple-phrase; is an
2359
+ inline mix, the OR bar is already there. -->
2360
+ <!ENTITY % attrib-elements
2361
+ "%emphasized-text;" >
2362
+
2363
+
2364
+ <!-- ATTRIBUTION -->
2365
+ <!-- Source, author, formal thanks, or other
2366
+ information (other than copyright material)
2367
+ concerning the origins of an extract, a poem
2368
+ <verse-group> or similar element.
2369
+ Formatting Note: Typically displayed on
2370
+ a separate line (or lines, following the
2371
+ material it concerns, inheriting that
2372
+ material's margins. -->
2373
+ <!ELEMENT attrib (#PCDATA %attrib-elements;)* >
2374
+
2375
+
2376
+ <!-- STRUCTURAL TITLE ELEMENTS -->
2377
+ <!-- The elements that can be included along with
2378
+ data characters inside the content model of
2379
+ the <title> element
2380
+ DESIGN NOTE: All inline mixes begin with an
2381
+ OR bar, but since %simple-phrase; is an
2382
+ inline mix, the OR bar is already there. -->
2383
+ <!ENTITY % struct-title-elements
2384
+ "%simple-phrase; | %break.class;" >
2385
+
2386
+
2387
+ <!-- TITLE -->
2388
+ <!-- Heading or title for a structural element
2389
+ such as a Section, Figure, Boxed Text, etc.-->
2390
+ <!ELEMENT title (#PCDATA %struct-title-elements;)* >
2391
+
2392
+
2393
+ <!-- LABEL ELEMENTS -->
2394
+ <!-- The elements that can be included along with
2395
+ data characters inside the content model of
2396
+ the <label> element -->
2397
+ <!ENTITY % label-elements
2398
+ "| %emphasis.class; | %inline-display.class; |
2399
+ %inline-math.class; | %subsup.class;" >
2400
+
2401
+
2402
+ <!-- LABEL OF A FIGURE, REFERENCE, ETC. -->
2403
+ <!-- The number and any prefix word that comes
2404
+ before, for example, the caption of a Figure,
2405
+ such as "Figure 3." or "Exhibit 2.". This
2406
+ element can be used to preserve the prefix
2407
+ number or label of an element, for example
2408
+ for a reference or citation "25." or
2409
+ "[Lapeyre 2002]". This can be useful when
2410
+ reconstructing untagged cross references. -->
2411
+ <!ELEMENT label (#PCDATA %label-elements;)* >
2412
+
2413
+
2414
+ <!-- ============================================================= -->
2415
+ <!-- RELATED ARTICLE ELEMENTS -->
2416
+ <!-- ============================================================= -->
2417
+
2418
+
2419
+ <!-- RELATED ARTICLE ELEMENTS -->
2420
+ <!-- Elements allowed inside <related-article> -->
2421
+ <!ENTITY % related-article-elements
2422
+ "| %emphasis.class; |%references.class; |
2423
+ %subsup.class;" >
2424
+
2425
+
2426
+ <!-- RELATED ARTICLE INFORMATION -->
2427
+ <!-- Wrapper element, used as a container for
2428
+ text links to a related article, possibly
2429
+ accompanied by a very brief description
2430
+ such as "errata (correction)".
2431
+ Remarks: This element is slightly overloaded
2432
+ in that it has 2 uses, one inside the article
2433
+ metadata to name one or more related articles
2434
+ and as part of the link class, which can
2435
+ occur many places in textual content.
2436
+ This allows all such references, to
2437
+ companion articles within the same journal,
2438
+ to a previous part of a multi-part article,
2439
+ to a news item that summarizes the article,
2440
+ to the article for which this article is
2441
+ a correction or addendum, etc. wherever
2442
+ these occur in the article. -->
2443
+ <!ELEMENT related-article
2444
+ (#PCDATA %related-article-elements;)* >
2445
+ <!-- id Unique identifier so the element may be
2446
+ referenced
2447
+ alt-form-of
2448
+ Exactly like the "alt-form-of" attribute
2449
+ used with <graphic>, this is an IDREF
2450
+ attribute which points to the ID of another
2451
+ <related-article> in the same document
2452
+ rather than to an external file.
2453
+ related-article-type
2454
+ addendum Additional material for an
2455
+ article, generated too late
2456
+ to be added to the main text
2457
+ commentary-article
2458
+ Used in an commentary or
2459
+ editorial to link to the
2460
+ article on which it is
2461
+ commenting
2462
+ companion Used in an article to link
2463
+ to a companion (related
2464
+ or sibling article)
2465
+ corrected-article
2466
+ Used in a correction to link
2467
+ to the article being
2468
+ corrected. Sometimes called
2469
+ erratum.
2470
+ in-this-issue Related article in the same
2471
+ journal issue
2472
+ letter A letter to the publication
2473
+ or a reply to such a
2474
+ letter
2475
+ commentary Used in an article to link
2476
+ to its associated commentary
2477
+ or editorial
2478
+ correction-forward
2479
+ Used in an article to link
2480
+ forward to its associated
2481
+ correction (rarely used)
2482
+ retracted-article
2483
+ Used in a retraction to link
2484
+ to the article being retracted
2485
+ retraction-forward
2486
+ Used in an article to link
2487
+ forward to its associated
2488
+ retraction (rare)
2489
+ vol Volume of the journal in which the related
2490
+ article exists. The scope is limited to
2491
+ the journal; in which the current article
2492
+ resides.
2493
+ page Page number of the related article. Scope
2494
+ is limited to the volume of the journal in
2495
+ which the current article resides. The
2496
+ values should be a first page or a page
2497
+ range.
2498
+ xlink:href Provides an address or identifier of the
2499
+ object to which the link points, for
2500
+ example a URI or a filename. -->
2501
+ <!ATTLIST related-article
2502
+ %related-article-atts; >
2503
+
2504
+
2505
+ <!-- ============================================================= -->
2506
+ <!-- FRONT MATTER/BACK MATTER ELEMENTS -->
2507
+ <!-- ============================================================= -->
2508
+
2509
+
2510
+ <!-- ACKNOWLEDGMENTS MODEL -->
2511
+ <!-- Content model for the <ack> element -->
2512
+ <!ENTITY % ack-model "%sec-opt-title-model;" >
2513
+
2514
+
2515
+ <!-- ACKNOWLEDGMENTS -->
2516
+ <!ELEMENT ack %ack-model; >
2517
+ <!-- id Unique identifier so the element may be
2518
+ referenced
2519
+ content-type
2520
+ Identification of the subject, type of
2521
+ content, or reason that this word or phrase
2522
+ is considered semantically special, as a
2523
+ means of preserving the semantic intent of
2524
+ the original tagging. -->
2525
+ <!ATTLIST ack
2526
+ id ID #IMPLIED
2527
+ content-type
2528
+ CDATA #IMPLIED >
2529
+
2530
+
2531
+ <!-- BIOGRAPHY MODEL -->
2532
+ <!-- Content model for the <bio> element -->
2533
+ <!ENTITY % bio-model "(title?, (%just-para.class;)+ ) " >
2534
+
2535
+
2536
+ <!-- BIOGRAPHY -->
2537
+ <!-- Sort biography of a person, usually the
2538
+ author
2539
+ Authoring Note: The "xlink:href" attribute
2540
+ may be used to point to a graphic of the
2541
+ author or to his/her website, etc. -->
2542
+ <!ELEMENT bio %bio-model; >
2543
+ <!-- id Unique identifier so the element may be
2544
+ referenced
2545
+ rid Points to the identifier of an author or
2546
+ authors
2547
+ xlink:href Provides an address or identifier of the
2548
+ object to which the link points, for
2549
+ example a URI or a filename. -->
2550
+ <!ATTLIST bio
2551
+ %bio-atts; >
2552
+
2553
+
2554
+ <!-- NOTES MODEL -->
2555
+ <!-- Content model for the <notes> element -->
2556
+ <!ENTITY % notes-model "%sec-opt-title-model;" >
2557
+
2558
+
2559
+ <!-- NOTES -->
2560
+ <!-- A container element for the notes that may
2561
+ appear at the end of an Article or at the
2562
+ end of a Table. For example, a typical
2563
+ end-of-article note is a "Note in Proof".
2564
+ A Note in Proof contains late-breaking news
2565
+ items or other material produced while the
2566
+ article was being typeset or was otherwise
2567
+ in production, that therefore happened too
2568
+ late to be included in the text of the
2569
+ article. This is typically NOT peer-reviewed
2570
+ content and citations to other material is
2571
+ usually just integrated into the text, not
2572
+ listed separately in a References List. -->
2573
+ <!ELEMENT notes %notes-model; >
2574
+ <!-- id Unique identifier so the element may be
2575
+ referenced
2576
+ notes-type To identify the type of note, if the type can
2577
+ be/has been identified, for example,
2578
+ "note-in-proof" -->
2579
+ <!ATTLIST notes
2580
+ %notes-atts; >
2581
+
2582
+
2583
+ <!-- ============================================================= -->
2584
+ <!-- ACCESSIBILITY ELEMENTS -->
2585
+ <!-- ============================================================= -->
2586
+
2587
+
2588
+ <!-- ALTERNATE TITLE TEXT FOR A FIGURE, ETC. -->
2589
+ <!-- Short phrase used to display or pronounce
2590
+ as an alternative to providing the full
2591
+ graphic for accessibility display or
2592
+ graphic-limited websites or devices. For
2593
+ example, <alt-text> may be used to display
2594
+ "behind" a figure or graphic.
2595
+ Authoring and Conversion Note: Not to be used
2596
+ as a replacement for <caption>. -->
2597
+ <!ELEMENT alt-text (#PCDATA) >
2598
+ <!-- id Unique identifier so the element may be
2599
+ referenced
2600
+ xml:lang The language in which the value of the
2601
+ element is expressed. Recommended best
2602
+ practice is to use values as defined in
2603
+ RFC 1766, typically 2-letter language
2604
+ codes such as "FR" (French), "EN" (English),
2605
+ and "DE" (German). These values are NOT
2606
+ case sensitive, so "EN" = "en". The values
2607
+ may include hyphenated differentiations such
2608
+ as "EN-AU" (Australian English) and "EN-US"
2609
+ (United States English). -->
2610
+ <!ATTLIST alt-text
2611
+ id ID #IMPLIED
2612
+ xml:lang NMTOKEN #IMPLIED >
2613
+
2614
+
2615
+ <!-- LONG DESCRIPTION ELEMENTS -->
2616
+ <!-- Elements to be mixed with data characters
2617
+ inside the <long-desc> element -->
2618
+ <!ENTITY % long-desc-elements
2619
+ " " >
2620
+
2621
+
2622
+ <!-- LONG DESCRIPTION -->
2623
+ <!-- Description or summary of the content of a
2624
+ graphical object, table, or textual object
2625
+ such as a text box, used by some systems to
2626
+ make the object accessible, even to people
2627
+ or systems that cannot read/see/display the
2628
+ object.
2629
+ Authoring and Conversion Note: Not to be used
2630
+ as a replacement for <caption>. -->
2631
+ <!ELEMENT long-desc (#PCDATA %long-desc-elements;) >
2632
+ <!-- id Unique identifier so the element may be
2633
+ referenced
2634
+ xml:lang The language in which the value of the
2635
+ element is expressed. Recommended best
2636
+ practice is to use values as defined in
2637
+ RFC 1766, typically 2-letter language
2638
+ codes such as "FR" (French), "EN" (English),
2639
+ and "DE" (German). These values are NOT
2640
+ case sensitive, so "EN" = "en". The values
2641
+ may include hyphenated differentiations such
2642
+ as "EN-AU" (Australian English) and "EN-US"
2643
+ (United States English). -->
2644
+ <!ATTLIST long-desc
2645
+ id ID #IMPLIED
2646
+ xml:lang NMTOKEN #IMPLIED >
2647
+
2648
+
2649
+ <!-- DEFINITION LIST: DEFINITION MODEL -->
2650
+ <!-- Content model for the <def> element -->
2651
+ <!ENTITY % def-model "((%just-para.class;)+ )" >
2652
+
2653
+
2654
+ <!-- DEFINITION LIST: DEFINITION -->
2655
+ <!-- Used in two senses:
2656
+ 1) The definition, description, or other
2657
+ explanation of the word, phrase, or picture
2658
+ of a 2-part or definition list
2659
+ 2) The definition or expansion of an
2660
+ abbreviation or acronym <abbrev> -->
2661
+ <!ELEMENT def %def-model; >
2662
+ <!-- id Unique identifier so the element may be
2663
+ referenced
2664
+ rid Points to the identifier of a term,
2665
+ so that a term and definition may be linked
2666
+ -->
2667
+ <!ATTLIST def
2668
+ rid IDREFS #IMPLIED
2669
+ id ID #IMPLIED >
2670
+
2671
+
2672
+ <!-- ============================================================= -->
2673
+ <!-- CUSTOMIZED METADATA ELEMENTS -->
2674
+ <!-- ============================================================= -->
2675
+
2676
+
2677
+ <!-- CUSTOMIZED METADATA WRAPPER MODEL -->
2678
+ <!-- Content model for the <custom-meta-wrap>
2679
+ element -->
2680
+ <!ENTITY % custom-meta-wrap-model
2681
+ "(custom-meta+)" >
2682
+
2683
+
2684
+ <!-- METADATA DATA NAME FOR CUSTOM METADATA -->
2685
+ <!-- Some DTDs and schemas allow for metadata
2686
+ above and beyond that which can be specified
2687
+ by this DTD. This element is a wrapper
2688
+ element used to contain all these additional
2689
+ metadata elements. -->
2690
+ <!ELEMENT custom-meta-wrap
2691
+ %custom-meta-wrap-model; >
2692
+
2693
+
2694
+ <!-- CUSTOMIZED METADATA MODEL -->
2695
+ <!-- Content model for the <custom-meta> element-->
2696
+ <!ENTITY % custom-meta-model
2697
+ "(meta-name, meta-value)" >
2698
+
2699
+
2700
+ <!-- CUSTOM METADATA -->
2701
+ <!-- Some DTDs and schemas allow for metadata
2702
+ above and beyond that which can be specified
2703
+ by this DTD. This element is used to capture
2704
+ metadata elements that have not been defined
2705
+ explicitly in the models for this DTD, so
2706
+ that the intellectual content will not be lost.
2707
+ REMARKS: The <custom-meta> element allows
2708
+ for an infinite number of name/value pairs,
2709
+ with few constraints on the length or
2710
+ content of the value. This element will
2711
+ probably be used for special cases, product-
2712
+ specific material, or other unusual
2713
+ metadata, for example the journal-history
2714
+ information preserved in at least one
2715
+ publisher's DTD. -->
2716
+ <!ELEMENT custom-meta %custom-meta-model; >
2717
+
2718
+
2719
+ <!-- METADATA DATA NAME ELEMENTS -->
2720
+ <!-- Elements that may be used, along with data
2721
+ characters, inside the <meta-name> element
2722
+ DESIGN NOTE: All inline mixes begin with an
2723
+ OR bar, but since %simple-phrase; is an
2724
+ inline mix, the OR bar is already there. -->
2725
+ <!ENTITY % meta-name-elements
2726
+ "%simple-phrase;" >
2727
+
2728
+
2729
+ <!-- METADATA DATA NAME FOR CUSTOM METADATA -->
2730
+ <!-- Some DTDs and schemas allow for metadata
2731
+ above and beyond that which can be specified
2732
+ by this DTD. The <custom-meta> element
2733
+ allow for an infinite number of name/value
2734
+ pairs, with few constraints on the length or
2735
+ content of the value. This element contains
2736
+ the name of the metadata field. -->
2737
+ <!ELEMENT meta-name (#PCDATA %meta-name-elements;)* >
2738
+
2739
+
2740
+ <!-- METADATA DATA VALUE ELEMENTS -->
2741
+ <!-- Elements that may be used, along with data
2742
+ characters, inside the <meta-value> element
2743
+ DESIGN NOTE: All inline mixes begin with an
2744
+ OR bar, but since %simple-phrase; is an
2745
+ inline mix, the OR bar is already there. -->
2746
+ <!ENTITY % meta-value-elements
2747
+ "%simple-phrase;" >
2748
+
2749
+
2750
+ <!-- METADATA DATA NAME FOR CUSTOM METADATA -->
2751
+ <!-- Some DTDs and schemas allow for metadata
2752
+ above and beyond that which can be specified
2753
+ by this DTD. The <custom-meta> element
2754
+ allow for an infinite number of name/value
2755
+ pairs, with few constraints on the length or
2756
+ content of the value. This element contains
2757
+ the value of the metadata field that is named
2758
+ by the <meta-name> element. -->
2759
+ <!ELEMENT meta-value (#PCDATA %meta-value-elements;)* >
2760
+
2761
+
2762
+
2763
+ <!-- ============================================================= -->
2764
+ <!-- GENERATED TEXT OR PUNCTUATION -->
2765
+ <!-- ============================================================= -->
2766
+
2767
+
2768
+ <!-- X ELEMENTS -->
2769
+ <!-- Elements for use inside the <x> element -->
2770
+ <!ENTITY % x-elements " " >
2771
+
2772
+
2773
+ <!-- X - GENERATED TEXT AND PUNCTUATION -->
2774
+ <!-- A container element to hold punctuation or
2775
+ other generated text, typically when 1) an
2776
+ archive decides not to have any text
2777
+ generated and thus to pre-generate such
2778
+ things as commas or semicolons between
2779
+ keywords or 2) when an archive receives text
2780
+ with <x> tags embedded and wishes to retain
2781
+ them.
2782
+ Remarks: This element is called "x" for
2783
+ historical reasons, since DTDs that use an
2784
+ element for generated punctuation have
2785
+ typically called it that. -->
2786
+ <!ELEMENT x (#PCDATA %x-elements;)* >
2787
+
2788
+
2789
+ <!-- ================== End Common (Shared) Elements Module ====== -->
2790
+