xml_jats_resolver 0.0.1

data/lib/dtd/archiving_dtd/1.0/dtd/archivecustomize.ent

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+<!-- ============================================================= -->
+<!--  MODULE:    Journal Archiving and Interchange DTD Customize   -->
+<!--             Classes Module                                    -->
+<!--  VERSION:   1.0                                               -->
+<!--  DATE:      December 2002                                     -->
+<!--                                                               -->
+<!-- ============================================================= -->
+
+<!-- ============================================================= -->
+<!--                    PUBLIC DOCUMENT TYPE DEFINITION            -->
+<!--                        TYPICAL INVOCATION                     -->
+<!--
+"-//NLM//DTD Journal Archiving and Interchange DTD Customize Classes Module v1.0 20021201//EN"
+Delivered as file "archivecustomize.ent"                           -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!-- SYSTEM:     Journal Archiving and Interchange DTD of the      -->
+<!--             Archiving and Interchange DTD Suite               -->
+<!--                                                               -->
+<!-- PURPOSE:    To declare the values for all the element class   -->
+<!--             Parameter Entities (PEs), variable content model  -->
+<!--             PEs, attribute value PEs, etc. for the Journal    -->
+<!--             Archiving and Interchange DTD developed from      -->
+<!--             the Archiving and Interchange DTD Suite.          -->
+<!--                                                               -->
+<!--             Note: Since PEs must be declared before they      -->
+<!--             are used, this module must be called first in     -->
+<!--             the DTD, following only the Module of Modules.    -->
+<!--                                                               -->
+<!-- CONTAINS:   1) PEs that define the element classes (such as   -->
+<!--                all lists, all links, all bibliographic        -->
+<!--                reference elements, etc.)                      -->
+<!--             2) PEs that define the element mixes. Mixes are   -->
+<!--                combinations of classes that are used to build -->
+<!--                content models.  The typical "mix" defines a   -->
+<!--                set of circumstances, such as all the elements -->
+<!--                at the same structural level as a paragraph    -->
+<!--                (paragraph-level elements) or phrase-level     -->
+<!--                elements.                                      -->
+<!--             3) PEs for complete content models                -->
+<!--             4) PEs for attribute values and lists             -->
+<!--                                                               -->
+<!-- CREATED FOR:                                                  -->
+<!--             Digital Archive of Journal Articles               -->
+<!--             National Center for Biotechnology Information     -->
+<!--                (NCBI)                                         -->
+<!--             National Library of Medicine (NLM)                -->
+<!--                                                               -->
+<!-- ORIGINAL CREATION DATE:                                       -->
+<!--             December 2002                                     -->
+<!--                                                               -->
+<!-- CREATED BY: Jeff Beck       (NCBI)                            -->
+<!--             Deborah Lapeyre (Mulberry Technologies, Inc.)     -->
+<!--             Bruce Rosenblum (Inera Inc.)                      -->
+<!--                                                               -->
+<!--             The Journal Archiving and Interchange DTD is      -->
+<!--             built from the Archiving and Interchange DTD      -->
+<!--             Suite                                             -->
+<!--                                                               -->
+<!--             NLM thanks the Harvard University Libraries, both -->
+<!--             for proposing that a draft archiving NLM DTD for  --> 
+<!--             life sciences journals be extended to accommodate -->
+<!--             journals in all disciplines and for sponsoring    -->
+<!--             Bruce Rosenblum's collaboration with other DTD    -->
+<!--             authors in completing Version 1.0. The Andrew W.  --> 
+<!--             Mellon Foundation provided support for these      --> 
+<!--             important contributions.                          -->
+<!--             contributions.                                    -->
+<!--                                                               -->
+<!--             Suggestions for refinements and enhancements to   -->
+<!--             this DTD should be sent in email to:              -->
+<!--                 archive-dtd@ncbi.nlm.nih.gov                  -->
+<!-- ============================================================= -->
+
+
+<!-- ============================================================= -->
+<!--                    DTD VERSION\CHANGE HISTORY                 -->
+<!-- ============================================================= -->
+<!--
+
+Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)
+                                                                   
+                                                                   -->
+
+<!-- ============================================================= -->
+<!--                    DUPLICATE PARAMETER ENTITIES               -->
+<!-- ============================================================= -->
+<!--                    Parameter entities that are replicated
+                        in this file, not because the are 
+                        overrides to the versions in the module
+                        set but because they are needed here so 
+                        that they will have been declared before
+                        they are used in this file.                -->
+                        
+                         
+
+<!--                    APPEARANCE ELEMENTS                        -->
+<!ENTITY % appearance.class   
+                        "font | hr"                                  >
+
+
+<!--                    DISPLAY CLASS ELEMENTS                     -->
+<!--                    Graphical or other image-related elements.
+                        The display elements may occur within 
+                        the text of a table cell or paragraph
+                        although they are typically at the same 
+                        hierarchical level as a paragraph.         -->
+<!ENTITY % block-display.class
+                        "array | boxed-text | chem-struct |
+                         chem-struct-wrapper |  
+                         fig | fig-group | graphic | preformat | 
+                         supplementary-material | table-wrap | 
+                         table-wrap-group"                           >
+
+
+
+<!--                    FORCED BREAK FORMATTING CLASS ELEMENTS     -->
+<!ENTITY % break.class  "break"                                      >
+
+
+<!--                    CITATION CLASS ELEMENTS                    -->
+<!--                    Reference to an external document, as used 
+                        within, for example, the text of a 
+                        paragraph                                  -->
+<!ENTITY % citation.class   
+                        "citation"                                   >
+
+
+<!--                    ADDRESS ELEMENTS INSIDE A PARAGRAPH        -->
+<!--                    Address elements that are allowed loose inside
+                        a paragraph                                -->
+<!ENTITY % inpara-address 
+                        "email"                                      >
+
+<!--                    IN TABLE PARAGRAPH CLASS                   -->
+<!--                    The simpler of the paragraph-level elements
+                        that might be found inside a table, as an
+                        alternative to a table tag. 
+                        Remarks: Although in theory all tables are 
+                        rows and columns, some journals allow a
+                        "table" element to contain a definition list,
+                        a paragraph, a bulleted list, etc. instead
+                        of rows and columns.                       -->
+<!ENTITY % intable-para.class                                   
+                        "speech | disp-quote | statement | 
+                         verse-group"                                >
+
+
+<!--                    SECTION CLASS ELEMENTS                     -->
+<!--                    Information for the reader that is at the
+                        same structural level as a Section, which is
+                        a headed structure full of smaller elements
+                        such as paragraphs.                        
+                        Note: Overrides the definition in the
+                        Section Class Module %section.ent;         -->
+<!ENTITY % sec.class    "sec"                                        >
+                            
+
+<!--                    SIMPLE DISPLAY ELEMENTS                    -->
+<!--                    The simplest and most basic of the Display
+                        Class elements, which may be allowed in many
+                        places, for example, inside other Display
+                        Class elements or inside the cell of a
+                        Table                                      -->
+<!ENTITY % simple-display.class
+                        "array | chem-struct | graphic | preformat"  >
+
+
+<!-- ============================================================= -->
+<!--                    FORMATTING CLASS ELEMENTS (format.ent)     -->
+<!-- ============================================================= -->
+
+
+<!--                    UP/DOWN RENDITION ELEMENTS                 -->
+<!ENTITY % subsup.class "sub | sup"                                  >
+
+
+<!--                    EMPHASIS RENDITION ELEMENTS                -->
+<!ENTITY % emphasis.class   
+                        "bold | italic | monospace | 
+                         overline | overline-start | overline-end | 
+                         sc | strike | underline | 
+                         underline-start |  underline-end "          >
+
+
+<!-- ============================================================= -->
+<!--                    DISPLAY ELEMENT CLASSES                    -->
+<!-- ============================================================= -->
+
+
+<!--                    INLINE DISPLAY CLASS ELEMENTS              -->
+<!--                    Non-block display elements that set or
+                        display inline with the text               -->
+<!ENTITY % inline-display.class
+                        "inline-graphic | private-char"              >
+
+
+<!--                    SIMPLE TABLE DISPLAY ELEMENTS              -->
+<!--                    Very similar to the simple-display.class, but
+                        Table Wrappers <table-wrap> should contain
+                        <table>s, <oasis:table>s, etc., not
+                        arrays.                                    -->
+<!ENTITY % simple-intable-display.class
+                        "chem-struct | graphic | preformat"          >
+
+
+<!--                    TABLE CLASS ELEMENTS                       -->
+<!--                    Elements that will be used to contain the
+                        rows and columns inside the Table Wrapper 
+                        element <table-wrap>.  The following elements 
+                        can be set up for inclusion:
+                          XHTML Table Model    table               -->
+<!ENTITY % table.class  "table"                                      >
+
+
+<!-- ============================================================= -->
+<!--                    LINK CLASS ELEMENTS  (%link.ent;)          -->
+<!-- ============================================================= -->
+
+
+<!--                    EXTERNAL LINKS CLASS                       -->
+<!--                    Just the external link element, for the
+                        first round                                -->
+<!ENTITY % ext-links.class   
+                        "ext-link"                                   >
+
+
+<!--                    LINKS/CROSS-REFERENCES CLASS ELEMENTS      -->
+<!--                    Elements that act as one end of a link or
+                        cross-reference, either internal or external
+                                                                   -->
+<!ENTITY % link.class   "ext-link | fn | 
+                         inline-supplementary-material | 
+                         related-article | target | xref"            >
+
+
+<!--                    SIMPLE LINKS/CROSS-REFERENCES CLASS        -->
+<!--                    The smaller and simpler linking elements
+                        that might be inside, for example, a
+                        Keyword <kwd>                              -->
+<!ENTITY % simple-link.class   
+                        "fn | target | xref"                         >
+
+
+
+<!-- ============================================================= -->
+<!--                    LIST CLASS ELEMENTS                        -->
+<!-- ============================================================= -->
+
+
+<!--                    LIST CLASS ELEMENTS                        -->
+<!--                    All the types of lists that may occur 
+                        as part of the text, therefore excluding
+                        Bibliographic Reference Lists <ref-list>    -->
+<!ENTITY % list.class   "def-list | list"                             >
+
+                         
+<!-- ============================================================= -->
+<!--                    MATHEMATICS CLASSES                        -->
+<!-- ============================================================= -->
+
+
+<!--                    MATHEMATICAL EXPRESSIONS AND FORMULAE MIX  -->
+<!ENTITY % block-math   "disp-formula"                               >
+
+
+<!--                    INLINE MATHEMATICAL EXPRESSIONS MIX        -->
+<!ENTITY % inline-math  "inline-formula"                             >
+
+
+<!--                    MATHEMATICAL EXPRESSIONS                   -->
+<!ENTITY % math.class   "tex-math | mml:math"                        >
+
+
+
+<!-- ============================================================= -->
+<!--                    PARAGRAPH-LIKE ELEMENTS                    -->
+<!-- ============================================================= -->
+
+
+<!--                    REST OF PARAGRAPH CLASS (MINUS PARAGRAPH)  -->
+<!--                    Full paragraph class, minus the paragraph
+                        element itself, so this PE can be used inside
+                        the content model of a paragraph.          -->
+<!ENTITY % rest-of-para.class   
+                        "ack | disp-quote | speech  | statement | 
+                         verse-group"                                >
+
+
+<!--                    PARAGRAPH CLASS                            -->
+<!--                    Information for the reader that is at the
+                        same structural level as a Paragraph       -->
+<!ENTITY % para.class   "related-article | p | 
+                         %rest-of-para.class;"                       >
+
+
+<!-- ============================================================= -->
+<!--                    PHRASE-LEVEL CONTENT ELEMENTS              -->
+<!-- ============================================================= -->
+
+
+<!--                    PHRASE CLASS ELEMENTS                      -->
+<!--                    Small inline elements, that surround a word
+                        or phrase in the text because the subject
+                        (content) should be identified. For example,
+                        a <named-content> element could be used to
+                        identify a drug name, genus/species, product,
+                        etc.                                       -->
+<!ENTITY % phrase.class "named-content"                              >
+
+
+<!-- ============================================================= -->
+<!--                    REFERENCE ELEMENTS (BIBLIOGRAPHIC CITATION)-->
+<!-- ============================================================= -->
+
+
+<!--                    REFERENCE ELEMENTS (BIBLIOGRAPHIC CITATION -->
+<!--                    The elements that may be included inside a
+                        Citation (bibliographic reference)       
+                        Note: Overrides the definition in the
+                        References Class Module %references.ent;   -->
+<!ENTITY % references.class
+                        "access-date | annotation | article-title | 
+                         collab | comment | 
+                         conf-date | conf-loc | conf-name | 
+                         day | edition | email | elocation-id | 
+                         etal | fpage |  gov | issn | isbn | 
+                         issue | lpage | month | name | 
+                         patent | person-group | pub-id | 
+                         publisher-loc | publisher-name | season |
+                         series | source | std | supplement |
+                         time-stamp | trans-source | trans-title | 
+                         volume | year"                              >
+
+
+<!-- ============================================================= -->
+<!--                    SECTION ELEMENTS                           -->
+<!-- ============================================================= -->
+
+
+<!--                    SECTION-LEVEL ELEMENTS                     -->
+<!--                    Elements that may be used at the same
+                        structural level as a Section for example
+                        inside the Body <body>                     -->
+<!ENTITY % sec-level    "%sec.class;"                                >
+                         
+
+<!-- ============================================================= -->
+<!--                    BACK MATTER ELEMENTS (%backmatter.ent;)    -->
+<!-- ============================================================= -->
+
+
+<!--                    DOCUMENT BACK MATTER ELEMENTS              -->
+<!--                    Back Matter Elements used by a full document
+                        such as a journal article                  -->
+<!ENTITY % doc-back-matter-elements
+                        "ack | app-group | bio | fn-group | glossary | 
+                         notes | ref-list | %sec-level;"             >
+
+
+<!--                    SECTION BACK MATTER ELEMENTS               -->
+<!--                    Back matter elements used inside smaller
+                        structures, such as sections and sidebars  -->
+<!ENTITY % sec-back-matter-elements
+                        "glossary | fn-group | notes | ref-list"     >
+
+                                                                
+
+
+<!-- ============================================================= -->
+<!--                    ELEMENT CLASS MIXES FOR CONTENT MODELS     -->
+<!-- ============================================================= -->
+
+
+<!--                    EMPHASIS MIX ELEMENTS                      -->
+<!--                    Elements that may be used inside most of the
+                        emphasis class elements                    -->
+<!ENTITY % emphasized-text  
+                        "%appearance.class; | %emphasis.class;  | 
+                         %inline-math; | %link.class; | 
+                         %math.class; | %phrase.class; | 
+                         %subsup.class;"                             >
+
+
+<!--                    INSIDE A PARAGRAPH ELEMENTS                -->
+<!--                    Elements that may be used within a paragraph
+                        in a mixed content model with #PCDATA.
+                        Note: There is a major overlap between this
+                        parameter entity and that for the elements
+                        that are at the same level as a paragraph.
+                        Inline elements appear only inside a 
+                        paragraph, but block elements such as quotes 
+                        and lists may appear either within a 
+                        paragraph or at the same level as a 
+                        paragraph. This serves a requirement in a 
+                        repository DTD, since some incoming material 
+                        will have restricted such elements to only 
+                        inside a paragraph, some incoming material 
+                        will have restricted them to only outside a 
+                        paragraph and some may allow them in both
+                        places. Thus the DTD must allow for them to
+                        be in either or both.                      -->
+<!ENTITY % inside-para  "%block-display.class; | %block-math; | 
+                         %citation.class; | %emphasis.class; |
+                         %inline-display.class; | 
+                         %inline-math; |  %inpara-address; |
+                         %link.class; | %list.class; |  
+                         %math.class; | %rest-of-para.class; | 
+                         %phrase.class; | %subsup.class;"            >
+                          
+
+<!--                    JUST RENDITION                             -->
+<!--                    Only the simplest of the typographic 
+                        emphasis elements, as well as subscript and
+                        superscript.  Usually used in a model that
+                        allows #PCDATA and this restricted mixture.
+                        This mix may be stripped down to only
+                        subscript and superscript by some, more
+                        restrictive DTDs.                         
+                        DTD Maintenance Note: This Parameter Entity
+                        and the related PE "rendition-plus" have
+                        been put in place to restrict the amount of
+                        variability that a person modifying the DTD
+                        through PE redefinition can achieve. Some
+                        elements have been set #PCDATA plus one PE
+                        and some have been set to #PCDATA plus the
+                        other in an effort to allow designers to
+                        modify entire groups of elements, but not
+                        to change similar models individually .    -->
+<!ENTITY % just-rendition
+                        "| %emphasis.class;  | %subsup.class;"       >
+
+
+<!--                    PARAGRAPH-LEVEL ELEMENTS                   -->
+<!--                    Elements that may be used at the same
+                        structural level as a paragraph, for 
+                        example inside a Section
+                        Note: There a major overlap between this
+                        parameter entity and that for the elements
+                        that are at the same level as a paragraph.
+                        Inline elements appear only inside a 
+                        paragraph, but block elements such as quotes 
+                        and lists may appear either within a 
+                        paragraph or at the same level as a 
+                        paragraph. This serves a requirement in a 
+                        repository DTD, since some incoming material 
+                        will have restricted such elements to only 
+                        inside a paragraph,  some incoming material 
+                        will have restricted them to only outside a 
+                        paragraph and some may allow them in both
+                        places. Thus the DTD must allow for them to
+                        be in either or both.                      -->
+<!ENTITY % para-level   "%block-display.class; | %block-math; | 
+                         %list.class; | %math.class; | 
+                         %para.class;"                               >
+                         
+
+<!--                    RENDITION MARKUP PLUS                      -->
+<!--                    Only the simplest of the typographic 
+                        emphasis elements, as well as subscript and
+                        superscript.  Usually used in a model that
+                        allows #PCDATA and this restricted mixture.
+                        This mix may be enhanced slightly in some
+                        more permissive DTDs, and should always
+                        contain at least typographic emphasis, 
+                        subscript, and superscript.  
+                        DTD Maintenance Note: This Parameter Entity
+                        and the related PE "Just-rendition" have
+                        been put in place to restrict the amount of
+                        variability that a person modifying the DTD
+                        through PE redefinition can achieve. Some
+                        elements have been set #PCDATA plus one PE
+                        and some have been set to #PCDATA plus the
+                        other in an effort to allow designers to
+                        modify entire groups of elements, but not
+                        to individually change similar models. 
+                        modify entire groups of elements, but not
+                        to change similar models individually .    -->
+<!ENTITY % rendition-plus                             
+                        "| %emphasis.class;  | %subsup.class;"         >
+
+
+<!--                    SIMPLE PHRASE-LEVEL TEXTUAL ELEMENTS       -->
+<!--                    Elements that may be used almost anywhere
+                        text is used, for example, inside a title.
+                        Simple text plus inline display and math 
+                        elements.                                  -->
+<!ENTITY % simple-phrase
+                        "%emphasis.class; | %inline-display.class; | 
+                         %inline-math; | %link.class; |
+                         %math.class; | %phrase.class; | 
+                         %subsup.class;"                             >
+
+
+<!--                    SIMPLE TEXTUAL CONTENT                     -->
+<!--                    Elements that may be used inside elements
+                        that are really expected to be #PCDATA and
+                        not to contain any of these things.
+                        Note that there is no math and no links.
+                        Simpler even than %simple-phrase;          -->
+<!ENTITY % simple-text  "%emphasis.class;  | %inline-display.class; |
+                         %phrase.class; | %subsup.class; "           >
+
+                         
+<!-- ============================================================= -->
+<!--                    TABLE ELEMENT MIXES                        -->
+<!-- ============================================================= -->
+                          
+
+<!--                    INSIDE TABLE CELL ELEMENTS                 -->
+<!--                    Mixed with #PCDATA inside a table cell, such
+                        as a <td> or <th> element in the XHTML table
+                        model, the <entry> element in the OASIS CALS
+                        table model, etc.  This PE will be used as the
+                        value of %FlowMix;, %paracon;, etc.        -->
+<!ENTITY % inside-cell  "%appearance.class; | %block-math; |
+                         %break.class; | %citation.class; |
+                         %emphasis.class; | %inline-math; | 
+                         %link.class; | %list.class; |  
+                         %math.class; | %simple-display.class; |
+                         %subsup.class;"                             >
+
+
+<!--                    INSIDE TABLE WRAPPER ELEMENTS              -->
+<!--                    Usually a Table Wrapper contains a table,
+                        properly tagged with rows and columns, but
+                        sometimes, a structure that is labeled as
+                        a "table" is actually a list, or two
+                        paragraphs.  This Parameter Entity names
+                        all the alternatives to table that may 
+                        occur inside a table wrapper.              -->
+<!ENTITY % inside-table-wrapper
+                        "%intable-para.class; | %list.class; | 
+                         %simple-intable-display.class;  |  
+                         %table.class;"                              >
+                          
+
+<!--                    TABLE WRAPPER ATTRIBUTES                   -->
+<!--                    Attributes to be added to the regular NLM
+                        table attributes, for example, when the
+                        Elsevier or OASIS Exchange table models are
+                        used.                                      -->
+<!ENTITY % other-table-wrap-atts
+             ""                                                      > 
+
+
+
+<!-- ============================================================= -->
+<!--                    OVER RIDES OF CONTENT MODELS               -->
+<!-- ============================================================= -->
+
+
+<!--                    ARTICLE METADATA MODEL                     -->
+<!--                    Full content model for the metadata that is
+                        specific to the article.
+                        Note: This includes both metadata that 
+                        directly describes the article (such as the 
+                        article title, abstract, or article ID) as 
+                        well as the metadata that many MAJOUR-style 
+                        DTDs (such DTDs split the metadata into three
+                        categories: journal metadata, article
+                        metadata, and issue metadata), call the issue
+                        metadata.
+                        Related Element: Metadata specific to the
+                        journal is within the element <journal-meta> 
+                        Journal Metadata                           -->
+<!ENTITY % article-meta-model  
+                        "article-id*, article-categories?, 
+                         title-group?, (contrib-group | aff)*, 
+                         author-notes?, pub-date*, volume?, issue?, 
+                         ((fpage, lpage?) | elocation-id)?, 
+                         (ext-link|product|supplementary-material)*, 
+                         history?, copyright-statement?, 
+                         copyright-year?, 
+                         self-uri*, related-article*, abstract*, 
+                         trans-abstract*, kwd-group*,
+                         contract-num*, contract-sponsor*, 
+                         conference*, counts?"                       >
+
+
+<!-- ================== End Journal Archiving Customization ====== -->