xml_jats_resolver 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1312) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +6 -0
  3. data/CHANGELOG.md +3 -0
  4. data/Gemfile +8 -0
  5. data/LICENSE.md +25 -0
  6. data/README.md +3 -0
  7. data/Rakefile +10 -0
  8. data/lib/dtd/archiving_dtd/1.0/dtd/XHTMLtablesetup.ent +247 -0
  9. data/lib/dtd/archiving_dtd/1.0/dtd/archivearticle.dtd +815 -0
  10. data/lib/dtd/archiving_dtd/1.0/dtd/archivecustomize.ent +583 -0
  11. data/lib/dtd/archiving_dtd/1.0/dtd/articlemeta.ent +1431 -0
  12. data/lib/dtd/archiving_dtd/1.0/dtd/backmatter.ent +216 -0
  13. data/lib/dtd/archiving_dtd/1.0/dtd/catalog.ent +76 -0
  14. data/lib/dtd/archiving_dtd/1.0/dtd/chars.ent +333 -0
  15. data/lib/dtd/archiving_dtd/1.0/dtd/checksum.md5 +83 -0
  16. data/lib/dtd/archiving_dtd/1.0/dtd/common.ent +1609 -0
  17. data/lib/dtd/archiving_dtd/1.0/dtd/display.ent +988 -0
  18. data/lib/dtd/archiving_dtd/1.0/dtd/format.ent +403 -0
  19. data/lib/dtd/archiving_dtd/1.0/dtd/htmltable.dtd +334 -0
  20. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsa.ent +173 -0
  21. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsb.ent +146 -0
  22. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsc.ent +49 -0
  23. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsn.ent +117 -0
  24. data/lib/dtd/archiving_dtd/1.0/dtd/isoamso.ent +77 -0
  25. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsr.ent +205 -0
  26. data/lib/dtd/archiving_dtd/1.0/dtd/isobox.ent +67 -0
  27. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr1.ent +94 -0
  28. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr2.ent +53 -0
  29. data/lib/dtd/archiving_dtd/1.0/dtd/isodia.ent +41 -0
  30. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk1.ent +1 -1
  31. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk2.ent +1 -1
  32. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk3.ent +70 -0
  33. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk4.ent +1 -1
  34. data/lib/dtd/archiving_dtd/1.0/dtd/isolat1.ent +89 -0
  35. data/lib/dtd/archiving_dtd/1.0/dtd/isolat2.ent +148 -0
  36. data/lib/dtd/archiving_dtd/1.0/dtd/isomfrk.ent +79 -0
  37. data/lib/dtd/archiving_dtd/1.0/dtd/isomopf.ent +53 -0
  38. data/lib/dtd/archiving_dtd/1.0/dtd/isomscr.ent +79 -0
  39. data/lib/dtd/archiving_dtd/1.0/dtd/isonum.ent +103 -0
  40. data/lib/dtd/archiving_dtd/1.0/dtd/isopub.ent +110 -0
  41. data/lib/dtd/archiving_dtd/1.0/dtd/isotech.ent +183 -0
  42. data/lib/dtd/archiving_dtd/1.0/dtd/journalmeta.ent +269 -0
  43. data/lib/dtd/archiving_dtd/1.0/dtd/link.ent +417 -0
  44. data/lib/dtd/archiving_dtd/1.0/dtd/list.ent +361 -0
  45. data/lib/dtd/archiving_dtd/1.0/dtd/math.ent +220 -0
  46. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mathml2-qname-1.mod +275 -0
  47. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlalias.ent +564 -0
  48. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlextra.ent +128 -0
  49. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2-qname-1.mod +275 -0
  50. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2.dtd +1960 -0
  51. data/lib/dtd/archiving_dtd/1.0/dtd/mathmlsetup.ent +141 -0
  52. data/lib/dtd/archiving_dtd/1.0/dtd/mmlalias.ent +564 -0
  53. data/lib/dtd/archiving_dtd/1.0/dtd/mmlextra.ent +128 -0
  54. data/lib/dtd/archiving_dtd/1.0/dtd/modules.ent +344 -0
  55. data/lib/dtd/archiving_dtd/1.0/dtd/notat.ent +147 -0
  56. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-exchange.ent +354 -0
  57. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-tablesetup.ent +258 -0
  58. data/lib/dtd/archiving_dtd/1.0/dtd/para.ent +320 -0
  59. data/lib/dtd/archiving_dtd/1.0/dtd/phrase.ent +213 -0
  60. data/lib/dtd/archiving_dtd/1.0/dtd/readme.txt +247 -0
  61. data/lib/dtd/archiving_dtd/1.0/dtd/references.ent +559 -0
  62. data/lib/dtd/archiving_dtd/1.0/dtd/sampleminimal.xml +5 -0
  63. data/lib/dtd/archiving_dtd/1.0/dtd/samplesmall.xml +84 -0
  64. data/lib/dtd/archiving_dtd/1.0/dtd/section.ent +205 -0
  65. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsa.ent +173 -0
  66. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsb.ent +146 -0
  67. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsc.ent +49 -0
  68. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsn.ent +117 -0
  69. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamso.ent +77 -0
  70. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsr.ent +205 -0
  71. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isobox.ent +67 -0
  72. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr1.ent +94 -0
  73. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr2.ent +53 -0
  74. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isodia.ent +41 -0
  75. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk1.ent +1 -1
  76. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk2.ent +1 -1
  77. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk3.ent +70 -0
  78. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk4.ent +1 -1
  79. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat1.ent +89 -0
  80. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat2.ent +148 -0
  81. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomfrk.ent +79 -0
  82. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomopf.ent +53 -0
  83. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomscr.ent +79 -0
  84. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isonum.ent +103 -0
  85. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isopub.ent +110 -0
  86. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isotech.ent +183 -0
  87. data/lib/dtd/archiving_dtd/1.0/dtd/xmlspecchars.ent +274 -0
  88. data/lib/dtd/archiving_dtd/1.1/dtd/XHTMLtablesetup.ent +289 -0
  89. data/lib/dtd/archiving_dtd/1.1/dtd/archivearticle.dtd +819 -0
  90. data/lib/dtd/archiving_dtd/1.1/dtd/archivecustomize.ent +597 -0
  91. data/lib/dtd/archiving_dtd/1.1/dtd/articlemeta.ent +1464 -0
  92. data/lib/dtd/archiving_dtd/1.1/dtd/backmatter.ent +216 -0
  93. data/lib/dtd/archiving_dtd/1.1/dtd/catalog.ent +76 -0
  94. data/lib/dtd/archiving_dtd/1.1/dtd/chars.ent +340 -0
  95. data/lib/dtd/archiving_dtd/1.1/dtd/common.ent +1674 -0
  96. data/lib/dtd/archiving_dtd/1.1/dtd/display.ent +1334 -0
  97. data/lib/dtd/archiving_dtd/1.1/dtd/format.ent +401 -0
  98. data/lib/dtd/archiving_dtd/1.1/dtd/htmltable.dtd +334 -0
  99. data/lib/dtd/archiving_dtd/1.1/dtd/journalmeta.ent +283 -0
  100. data/lib/dtd/archiving_dtd/1.1/dtd/link.ent +475 -0
  101. data/lib/dtd/archiving_dtd/1.1/dtd/list.ent +416 -0
  102. data/lib/dtd/archiving_dtd/1.1/dtd/math.ent +288 -0
  103. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mathml2-qname-1.mod +1 -3
  104. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlalias.ent +1 -1
  105. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlextra.ent +1 -1
  106. data/lib/dtd/archiving_dtd/1.1/dtd/mathml2.dtd +1960 -0
  107. data/lib/dtd/archiving_dtd/1.1/dtd/mathmlsetup.ent +171 -0
  108. data/lib/dtd/archiving_dtd/1.1/dtd/modules.ent +349 -0
  109. data/lib/dtd/archiving_dtd/1.1/dtd/notat.ent +147 -0
  110. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-exchange.ent +354 -0
  111. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-tablesetup.ent +298 -0
  112. data/lib/dtd/archiving_dtd/1.1/dtd/para.ent +368 -0
  113. data/lib/dtd/archiving_dtd/1.1/dtd/phrase.ent +244 -0
  114. data/lib/dtd/archiving_dtd/1.1/dtd/references.ent +560 -0
  115. data/lib/dtd/archiving_dtd/1.1/dtd/section.ent +202 -0
  116. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsa.ent +1 -1
  117. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsb.ent +1 -1
  118. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsc.ent +1 -1
  119. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsn.ent +1 -1
  120. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamso.ent +1 -1
  121. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsr.ent +1 -1
  122. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isobox.ent +1 -1
  123. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr1.ent +1 -1
  124. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr2.ent +1 -1
  125. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isodia.ent +1 -1
  126. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk1.ent +1 -1
  127. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk2.ent +1 -1
  128. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk3.ent +1 -1
  129. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk4.ent +1 -1
  130. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat1.ent +1 -1
  131. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat2.ent +1 -1
  132. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomfrk.ent +1 -1
  133. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomopf.ent +1 -1
  134. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomscr.ent +1 -1
  135. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isonum.ent +1 -1
  136. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isopub.ent +1 -1
  137. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isotech.ent +1 -1
  138. data/lib/dtd/archiving_dtd/1.1/dtd/xmlspecchars.ent +274 -0
  139. data/lib/dtd/archiving_dtd/2.0/dtd/Readme.txt +225 -0
  140. data/lib/dtd/archiving_dtd/2.0/dtd/XHTMLtablesetup.ent +309 -0
  141. data/lib/dtd/archiving_dtd/2.0/dtd/archivearticle.dtd +952 -0
  142. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-classes.ent +157 -0
  143. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-mixes.ent +306 -0
  144. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-models.ent +756 -0
  145. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-modules.ent +116 -0
  146. data/lib/dtd/archiving_dtd/2.0/dtd/articlemeta.ent +1811 -0
  147. data/lib/dtd/archiving_dtd/2.0/dtd/backmatter.ent +277 -0
  148. data/lib/dtd/archiving_dtd/2.0/dtd/catalog.ent +115 -0
  149. data/lib/dtd/archiving_dtd/2.0/dtd/chars.ent +359 -0
  150. data/lib/dtd/archiving_dtd/2.0/dtd/common.ent +2790 -0
  151. data/lib/dtd/archiving_dtd/2.0/dtd/default-classes.ent +704 -0
  152. data/lib/dtd/archiving_dtd/2.0/dtd/default-mixes.ent +357 -0
  153. data/lib/dtd/archiving_dtd/2.0/dtd/display.ent +1468 -0
  154. data/lib/dtd/archiving_dtd/2.0/dtd/format.ent +412 -0
  155. data/lib/dtd/archiving_dtd/2.0/dtd/htmltable.dtd +334 -0
  156. data/lib/dtd/archiving_dtd/2.0/dtd/journalmeta.ent +341 -0
  157. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-classes.ent +200 -0
  158. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-mixes.ent +207 -0
  159. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-models.ent +859 -0
  160. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-modules.ent +125 -0
  161. data/lib/dtd/archiving_dtd/2.0/dtd/journalpublishing.dtd +955 -0
  162. data/lib/dtd/archiving_dtd/2.0/dtd/link.ent +510 -0
  163. data/lib/dtd/archiving_dtd/2.0/dtd/list.ent +465 -0
  164. data/lib/dtd/archiving_dtd/2.0/dtd/math.ent +329 -0
  165. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mathml2-qname-1.mod +1 -3
  166. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlalias.ent +1 -1
  167. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlextra.ent +1 -1
  168. data/lib/dtd/archiving_dtd/2.0/dtd/mathml2.dtd +1960 -0
  169. data/lib/dtd/archiving_dtd/2.0/dtd/mathmlsetup.ent +191 -0
  170. data/lib/dtd/archiving_dtd/2.0/dtd/modules.ent +417 -0
  171. data/lib/dtd/archiving_dtd/2.0/dtd/nlmcitation.ent +124 -0
  172. data/lib/dtd/archiving_dtd/2.0/dtd/notat.ent +172 -0
  173. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-exchange.ent +354 -0
  174. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-tablesetup.ent +308 -0
  175. data/lib/dtd/archiving_dtd/2.0/dtd/para.ent +420 -0
  176. data/lib/dtd/archiving_dtd/2.0/dtd/phrase.ent +278 -0
  177. data/lib/dtd/archiving_dtd/2.0/dtd/references.ent +726 -0
  178. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-green.xml +1 -0
  179. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-pub.xml +1 -0
  180. data/lib/dtd/archiving_dtd/2.0/dtd/section.ent +220 -0
  181. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsa.ent +1 -1
  182. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsb.ent +1 -1
  183. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsc.ent +1 -1
  184. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsn.ent +1 -1
  185. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamso.ent +1 -1
  186. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsr.ent +1 -1
  187. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isobox.ent +1 -1
  188. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr1.ent +1 -1
  189. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr2.ent +1 -1
  190. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isodia.ent +1 -1
  191. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk1.ent +1 -1
  192. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk2.ent +1 -1
  193. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk3.ent +1 -1
  194. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk4.ent +1 -1
  195. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat1.ent +1 -1
  196. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat2.ent +1 -1
  197. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomfrk.ent +1 -1
  198. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomopf.ent +1 -1
  199. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomscr.ent +1 -1
  200. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isonum.ent +97 -0
  201. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isopub.ent +1 -1
  202. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isotech.ent +1 -1
  203. data/lib/dtd/archiving_dtd/2.0/dtd/xmlspecchars.ent +290 -0
  204. data/lib/dtd/archiving_dtd/2.1/dtd/ArchiveReadme.txt +283 -0
  205. data/lib/dtd/archiving_dtd/2.1/dtd/XHTMLtablesetup.ent +320 -0
  206. data/lib/dtd/archiving_dtd/2.1/dtd/archivearticle.dtd +981 -0
  207. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-classes.ent +173 -0
  208. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-mixes.ent +317 -0
  209. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-models.ent +777 -0
  210. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-modules.ent +125 -0
  211. data/lib/dtd/archiving_dtd/2.1/dtd/articlemeta.ent +1816 -0
  212. data/lib/dtd/archiving_dtd/2.1/dtd/backmatter.ent +288 -0
  213. data/lib/dtd/archiving_dtd/2.1/dtd/catalog-v2.xml +577 -0
  214. data/lib/dtd/archiving_dtd/2.1/dtd/catalog.ent +179 -0
  215. data/lib/dtd/archiving_dtd/2.1/dtd/chars.ent +359 -0
  216. data/lib/dtd/archiving_dtd/2.1/dtd/common.ent +2991 -0
  217. data/lib/dtd/archiving_dtd/2.1/dtd/default-classes.ent +738 -0
  218. data/lib/dtd/archiving_dtd/2.1/dtd/default-mixes.ent +368 -0
  219. data/lib/dtd/archiving_dtd/2.1/dtd/display.ent +1480 -0
  220. data/lib/dtd/archiving_dtd/2.1/dtd/format.ent +412 -0
  221. data/lib/dtd/archiving_dtd/2.1/dtd/htmltable.dtd +334 -0
  222. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isobox.ent +61 -0
  223. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr1.ent +88 -0
  224. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr2.ent +47 -0
  225. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isodia.ent +35 -0
  226. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat1.ent +83 -0
  227. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat2.ent +142 -0
  228. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isonum.ent +97 -0
  229. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isopub.ent +105 -0
  230. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsa.ent +167 -0
  231. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsb.ent +143 -0
  232. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsc.ent +43 -0
  233. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsn.ent +114 -0
  234. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamso.ent +73 -0
  235. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsr.ent +204 -0
  236. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isogrk3.ent +64 -0
  237. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomfrk.ent +75 -0
  238. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomopf.ent +49 -0
  239. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomscr.ent +75 -0
  240. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isotech.ent +182 -0
  241. data/lib/dtd/archiving_dtd/2.1/dtd/journalmeta.ent +328 -0
  242. data/lib/dtd/archiving_dtd/2.1/dtd/link.ent +521 -0
  243. data/lib/dtd/archiving_dtd/2.1/dtd/list.ent +496 -0
  244. data/lib/dtd/archiving_dtd/2.1/dtd/math.ent +328 -0
  245. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlalias.ent +564 -0
  246. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlextra.ent +122 -0
  247. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2-qname-1.mod +286 -0
  248. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2.dtd +2206 -0
  249. data/lib/dtd/archiving_dtd/2.1/dtd/mathmlsetup.ent +280 -0
  250. data/lib/dtd/archiving_dtd/2.1/dtd/modules.ent +438 -0
  251. data/lib/dtd/archiving_dtd/2.1/dtd/notat.ent +172 -0
  252. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-exchange.ent +354 -0
  253. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-tablesetup.ent +308 -0
  254. data/lib/dtd/archiving_dtd/2.1/dtd/para.ent +445 -0
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  1181. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-ali-namespace1.ent +154 -0
  1182. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-archive-oasis-article1.dtd +894 -0
  1183. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-archive-oasis-custom-classes1.ent +326 -0
  1184. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-archive-oasis-custom-modules1.ent +269 -0
  1185. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-archivecustom-mixes1.ent +420 -0
  1186. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-archivecustom-models1.ent +1339 -0
  1187. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-articlemeta1.ent +1817 -0
  1188. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-backmatter1.ent +393 -0
  1189. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-chars1.ent +525 -0
  1190. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-common-atts1.ent +221 -0
  1191. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-common1.ent +4273 -0
  1192. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-default-classes1.ent +1277 -0
  1193. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-default-mixes1.ent +455 -0
  1194. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-display1.ent +1000 -0
  1195. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-format1.ent +858 -0
  1196. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-funding1.ent +547 -0
  1197. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-journalmeta1.ent +454 -0
  1198. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-link1.ent +416 -0
  1199. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-list1.ent +494 -0
  1200. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-math1.ent +402 -0
  1201. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-mathmlsetup1.ent +348 -0
  1202. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-modules1.ent +584 -0
  1203. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-nlmcitation1.ent +285 -0
  1204. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-notat1.ent +269 -0
  1205. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-oasis-namespace1.ent +223 -0
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  1207. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-para1.ent +481 -0
  1208. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-phrase1.ent +502 -0
  1209. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-references1.ent +1205 -0
  1210. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-related-object1.ent +283 -0
  1211. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-section1.ent +324 -0
  1212. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/JATS-xmlspecchars1.ent +389 -0
  1213. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/catalog-jats-v1-1-no-base.xml +946 -0
  1214. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/catalog-jats-v1-1-with-base.xml +951 -0
  1215. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isobox.ent +61 -0
  1216. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isocyr1.ent +88 -0
  1217. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isocyr2.ent +47 -0
  1218. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isodia.ent +35 -0
  1219. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isolat1.ent +83 -0
  1220. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isolat2.ent +142 -0
  1221. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isonum.ent +97 -0
  1222. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso8879/isopub.ent +105 -0
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  1226. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isoamsn.ent +114 -0
  1227. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isoamso.ent +73 -0
  1228. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isoamsr.ent +204 -0
  1229. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isogrk3.ent +64 -0
  1230. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isomfrk.ent +75 -0
  1231. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isomopf.ent +49 -0
  1232. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isomscr.ent +75 -0
  1233. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/iso9573-13/isotech.ent +182 -0
  1234. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/mathml/mmlalias.ent +564 -0
  1235. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/mathml/mmlextra.ent +122 -0
  1236. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/mathml2-qname-1.mod +286 -0
  1237. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/mathml2.dtd +2206 -0
  1238. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/oasis-exchange.ent +449 -0
  1239. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/xhtml-inlstyle-1.mod +34 -0
  1240. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/xhtml-table-1.mod +333 -0
  1241. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/xmlchars/isogrk1.ent +70 -0
  1242. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/xmlchars/isogrk2.ent +41 -0
  1243. data/lib/dtd/jats/1.1/oasis_mathml2_dtd/xmlchars/isogrk4.ent +66 -0
  1244. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-XHTMLtablesetup1.ent +501 -0
  1245. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-ali-namespace1.ent +154 -0
  1246. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-archive-oasis-article1-mathml3.dtd +911 -0
  1247. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-archive-oasis-custom-classes1.ent +326 -0
  1248. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-archive-oasis-custom-modules1.ent +269 -0
  1249. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-archivecustom-mixes1.ent +420 -0
  1250. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-archivecustom-models1.ent +1339 -0
  1251. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-articlemeta1.ent +1817 -0
  1252. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-backmatter1.ent +393 -0
  1253. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-chars1.ent +525 -0
  1254. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-common-atts1.ent +221 -0
  1255. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-common1.ent +4273 -0
  1256. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-default-classes1.ent +1277 -0
  1257. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-default-mixes1.ent +455 -0
  1258. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-display1.ent +1000 -0
  1259. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-format1.ent +858 -0
  1260. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-funding1.ent +547 -0
  1261. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-journalmeta1.ent +454 -0
  1262. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-link1.ent +416 -0
  1263. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-list1.ent +494 -0
  1264. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-math1.ent +402 -0
  1265. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-mathml3-mathmlsetup1.ent +350 -0
  1266. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-mathml3-modules1.ent +190 -0
  1267. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-modules1.ent +584 -0
  1268. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-nlmcitation1.ent +285 -0
  1269. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-notat1.ent +269 -0
  1270. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-oasis-namespace1.ent +223 -0
  1271. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-oasis-tablesetup1.ent +409 -0
  1272. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-para1.ent +481 -0
  1273. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-phrase1.ent +502 -0
  1274. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-references1.ent +1205 -0
  1275. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-related-object1.ent +283 -0
  1276. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-section1.ent +324 -0
  1277. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/JATS-xmlspecchars1.ent +389 -0
  1278. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/catalog-jats-v1-1-no-base.xml +946 -0
  1279. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/catalog-jats-v1-1-with-base.xml +951 -0
  1280. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isobox.ent +61 -0
  1281. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isocyr1.ent +88 -0
  1282. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isocyr2.ent +47 -0
  1283. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isodia.ent +35 -0
  1284. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isolat1.ent +83 -0
  1285. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isolat2.ent +142 -0
  1286. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isonum.ent +97 -0
  1287. data/lib/dtd/jats/1.1/oasis_mathml3_dtd/iso8879/isopub.ent +105 -0
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  1309. data/lib/errors.rb +21 -0
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  1311. data/xml_jats_resolver.gemspec +24 -0
  1312. metadata +1396 -0
data/lib/dtd/archiving_dtd/1.0/dtd/archivearticle.dtd ADDED
@@ -0,0 +1,815 @@
1
+ <!-- ============================================================= -->
2
+ <!-- MODULE: Journal Archiving and Interchange DTD -->
3
+ <!-- VERSION: 1.0 -->
4
+ <!-- DATE: December 2002 -->
5
+ <!-- -->
6
+ <!-- ============================================================= -->
7
+
8
+ <!-- ============================================================= -->
9
+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
10
+ <!-- TYPICAL INVOCATION -->
11
+ <!--
12
+ "-//NLM//DTD Journal Archiving and Interchange DTD v1.0 20021201//EN"
13
+ Delivered as file "archivearticle.dtd" -->
14
+ <!-- ============================================================= -->
15
+
16
+
17
+ <!-- ============================================================= -->
18
+ <!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
19
+ <!-- Archiving and Interchange DTD Suite -->
20
+ <!-- -->
21
+ <!-- PURPOSE: DTD to describe a full-text journal article -->
22
+ <!-- -->
23
+ <!-- The Journal Archiving and Interchange DTD -->
24
+ <!-- describes journal articles and some non-article -->
25
+ <!-- material such as product and book reviews for -->
26
+ <!-- repository or interchange purposes. It describes -->
27
+ <!-- both the metadata for a journal article and the -->
28
+ <!-- full content of the article. -->
29
+ <!-- This DTD was constructed using the modules in the -->
30
+ <!-- Archiving and Interchange DTD Suite, using almost -->
31
+ <!-- no customization. -->
32
+ <!-- -->
33
+ <!-- CONTAINS: 1) Invoke module of modules (%modules.ent;) -->
34
+ <!-- (Archiving and Interchange Suite module that -->
35
+ <!-- names all potential modules) -->
36
+ <!-- 2) Invoke Customization Module -->
37
+ <!-- (%archivecustomize.ent;) -->
38
+ <!-- (DTD-specific module that defines the classes, -->
39
+ <!-- mixes, and other Parameter Entities to be -->
40
+ <!-- used in this DTD) -->
41
+ <!-- 3) Invoke the Common Element Module (from Suite) -->
42
+ <!-- 4) Invoke all the Class Modules (from Suite) -->
43
+ <!-- 5) Parameter Entities for attribute values used -->
44
+ <!-- in this module (DTD-specific definitions) -->
45
+ <!-- 6) Define document element (Article <article>) -->
46
+ <!-- 7) Define Front Matter <front> -->
47
+ <!-- 8) Define Body Matter <body> -->
48
+ <!-- 9) Define Back Matter <back> -->
49
+ <!-- -->
50
+ <!-- CREATED FOR: -->
51
+ <!-- Digital Archive of Journal Articles -->
52
+ <!-- National Center for Biotechnology Information -->
53
+ <!-- (NCBI) -->
54
+ <!-- National Library of Medicine (NLM) -->
55
+ <!-- -->
56
+ <!-- ORIGINAL CREATION DATE: -->
57
+ <!-- December 2002 -->
58
+ <!-- -->
59
+ <!-- CREATED BY: Jeff Beck (NCBI) -->
60
+ <!-- Deborah Lapeyre (Mulberry Technologies, Inc.) -->
61
+ <!-- Bruce Rosenblum (Inera Inc.) -->
62
+ <!-- -->
63
+ <!-- The Journal Archiving and Interchange DTD is -->
64
+ <!-- built from the Archiving and Interchange DTD -->
65
+ <!-- Suite. -->
66
+ <!-- -->
67
+ <!-- The Archiving and Interchange DTD Suite evolved -->
68
+ <!-- from NLM/NCBI's pmc-1 DTD. -->
69
+ <!-- -->
70
+ <!-- NLM thanks the Harvard University Libraries, both -->
71
+ <!-- for proposing that a draft archiving NLM DTD for -->
72
+ <!-- life sciences journals be extended to accommodate -->
73
+ <!-- journals in all disciplines and for sponsoring -->
74
+ <!-- Bruce Rosenblum's collaboration with other DTD -->
75
+ <!-- authors in completing Version 1.0. The Andrew W. -->
76
+ <!-- Mellon Foundation provided support for these -->
77
+ <!-- important contributions. -->
78
+ <!-- contributions. -->
79
+ <!-- -->
80
+ <!-- Suggestions for refinements and enhancements to -->
81
+ <!-- this DTD should be sent in email to: -->
82
+ <!-- archive-dtd@ncbi.nlm.nih.gov -->
83
+ <!-- ============================================================= -->
84
+
85
+
86
+ <!-- ============================================================= -->
87
+ <!-- DTD VERSION\CHANGE HISTORY -->
88
+ <!-- ============================================================= -->
89
+ <!--
90
+
91
+ =============================================================
92
+
93
+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
94
+
95
+
96
+ -->
97
+
98
+
99
+ <!-- ============================================================= -->
100
+ <!-- DESIGN CONSIDERATIONS -->
101
+ <!-- ============================================================= -->
102
+
103
+
104
+ <!-- MODULAR DTD LIBRARY
105
+ A set of journal archiving and interchange
106
+ DTD modules was written as the basis for
107
+ publishing, interchange, and repository
108
+ DTDs, with the intention that DTDs for
109
+ specific purposes, such as this Journal
110
+ Archiving and Interchange DTD, would be
111
+ developed based on them.
112
+
113
+ This archiving DTD has been designed to
114
+ to be descriptive, open, and inclusive to
115
+ allow journal articles to be translated into
116
+ this format as conveniently as possible
117
+ from a wide variety of proprietary journal
118
+ article DTDs (such as Blackwell, Keton, and
119
+ Ovid).
120
+
121
+ This Archiving DTD has been developed from
122
+ the Archiving and Interchange DTD Suite
123
+ modules, in the approved manner, making
124
+ changes to the declarations in those modules
125
+ by overriding Parameter Entity contents
126
+ by redefining the entities in the
127
+ %archivecustomize.ent;
128
+ module, which is called from this DTD file.
129
+ No changes to any of the original Archiving
130
+ and Interchange Suite modules are required
131
+ in order to use this DTD. -->
132
+
133
+
134
+ <!-- ============================================================= -->
135
+ <!-- VERSION 1.0 DESIGN CONSIDERATIONS -->
136
+ <!-- ============================================================= -->
137
+
138
+
139
+ <!-- THE MANY ROADS NOT TAKEN
140
+ In the interest of getting a version of this
141
+ DTD into production as quickly as practical,
142
+ several structures and functions that might
143
+ be appropriately included have been delayed
144
+ until a future version of this DTD. Such
145
+ components include:
146
+ - Questions and Answers (These may be
147
+ modeled with the current DTDs by using
148
+ paragraphs and lists)
149
+ - Continuing Medical Education material
150
+ (which frequently contains questions
151
+ and answers)
152
+ - Forms and fill-in-the-blank
153
+ - Conflict of Interest statements and
154
+ Financial Disclosure (May be modeled
155
+ as paragraphs or footnotes)
156
+ - Electronic and Digital Rights Management
157
+ - Advertising included in the journal:
158
+ + Job ads
159
+ + Classified advertising
160
+ + Display advertising
161
+ - Calendars, meeting schedules, and
162
+ announcements. (These can be handled
163
+ as ordinary articles or sections within
164
+ articles)
165
+ - About the Journal material such as Author
166
+ Guidelines, Policy and Scope statements,
167
+ Editorial or advisory boards, detailed
168
+ indicia, etc.
169
+ -->
170
+
171
+
172
+ <!-- ============================================================= -->
173
+ <!-- MODULE OF MODULES INVOKED -->
174
+ <!-- ============================================================= -->
175
+
176
+
177
+ <!-- MODULE TO NAME THE MODULES -->
178
+ <!-- Names all the external modules (except
179
+ itself and the Customization Module) that
180
+ are part of the modular Journal Archiving
181
+ and Interchange DTD Suite library.
182
+ This DTD then selects from those
183
+ modules by referencing the external
184
+ Parameter Entities defined in the Module of
185
+ Modules. To include a set of elements (such
186
+ as all the lists or the MathML elements) this
187
+ DTD references the external Parameter Entity
188
+ of the module that contains the declarations.
189
+ -->
190
+ <!ENTITY % modules.ent PUBLIC
191
+ "-//NLM//DTD Archiving and Interchange DTD Suite Module of Modules v1.0 20021201//EN"
192
+ "modules.ent" >
193
+ %modules.ent;
194
+
195
+
196
+ <!-- ============================================================= -->
197
+ <!-- CUSTOMIZATION MODULE INVOKED -->
198
+ <!-- ============================================================= -->
199
+
200
+
201
+ <!-- CUSTOMIZATION (DEFINE CLASSES) MODULE -->
202
+ <!-- Set up the Parameter Entities and element
203
+ class definitions that will be used to
204
+ establish the content models and attribute
205
+ lists for the Archiving and Interchange DTD.
206
+ Note: must be called after the Module of
207
+ Modules but before any other module. -->
208
+ <!ENTITY % archivecustomize.ent PUBLIC
209
+ "-//NLM//DTD Journal Archiving and Interchange DTD Customize Classes Module v1.0 20021201//EN"
210
+ "archivecustomize.ent" >
211
+ %archivecustomize.ent;
212
+
213
+
214
+ <!-- ============================================================= -->
215
+ <!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
216
+ <!-- ============================================================= -->
217
+
218
+
219
+ <!-- COMMON (SHARED) DECLARATIONS -->
220
+ <!-- Declarations for elements, attributes,
221
+ entities, and Notations that are shared by
222
+ more than one class module. Note: Must be
223
+ called before any of the class modules. -->
224
+
225
+ %common.ent;
226
+
227
+
228
+ <!-- ============================================================= -->
229
+ <!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
230
+ <!-- ============================================================= -->
231
+
232
+
233
+ <!-- ARTICLE METADATA ELEMENTS -->
234
+ %articlemeta.ent;
235
+
236
+
237
+ <!-- BACK MATTER ELEMENTS -->
238
+ %backmatter.ent;
239
+
240
+
241
+ <!-- DISPLAY (GRAPHICAL) ELEMENTS -->
242
+ %display.ent;
243
+
244
+
245
+ <!-- FORMATTING ELEMENT CLASSES -->
246
+ <!-- Elements that change rendition/display. -->
247
+ %format.ent;
248
+
249
+
250
+ <!-- JOURNAL METADATA ELEMENTS -->
251
+ %journalmeta.ent;
252
+
253
+
254
+ <!-- LINK CLASS ELEMENTS -->
255
+ %link.ent;
256
+
257
+
258
+ <!-- LIST CLASS ELEMENTS -->
259
+ %list.ent;
260
+
261
+
262
+ <!-- MATH ELEMENTS -->
263
+ %math.ent;
264
+
265
+
266
+ <!-- PARAGRAPH-LEVEL ELEMENTS -->
267
+ %para.ent;
268
+
269
+
270
+ <!-- PHRASE-LEVEL ELEMENTS -->
271
+ %phrase.ent;
272
+
273
+
274
+ <!-- BIBLIOGRAPHIC REFERENCE (CITATION)
275
+ CLASS ELEMENTS -->
276
+ %references.ent;
277
+
278
+
279
+ <!-- SECTION ELEMENTS -->
280
+ %section.ent;
281
+
282
+
283
+ <!-- ============================================================= -->
284
+ <!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
285
+ <!-- ============================================================= -->
286
+
287
+
288
+ <!-- MATHML SETUP MODULE -->
289
+ <!-- Invoke the MathML modules -->
290
+ %mathmlsetup.ent;
291
+
292
+
293
+
294
+ <!-- XHTML TABLE SETUP MODULE -->
295
+ <!-- Set up the necessary Parameter Entity values
296
+ and then invoke XHTML (HTML 4.0) table
297
+ module -->
298
+ %XHTMLtablesetup.ent;
299
+
300
+
301
+ <!-- SPECIAL CHARACTERS DECLARATIONS -->
302
+ <!-- Standard XML special character entities
303
+ used in this DTD -->
304
+ %xmlspecchars.ent;
305
+
306
+
307
+ <!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
308
+ <!-- Custom special character entities created
309
+ specifically for use in this DTD Suite -->
310
+ %chars.ent;
311
+
312
+
313
+ <!-- NOTATION DECLARATIONS MODULE -->
314
+ %notat.ent;
315
+
316
+
317
+ <!-- ============================================================= -->
318
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE VALUES -->
319
+ <!-- ============================================================= -->
320
+
321
+
322
+ <!-- ARTICLE TYPES -->
323
+ <!-- What kind of article is this? All articles
324
+ should have types assigned if possible.
325
+ -->
326
+ <!ENTITY % article-types
327
+ "article-commentary | abstract | addendum |
328
+ announcement | book-review |
329
+ books-received | brief-report | calendar |
330
+ case-report | correction | discussion |
331
+ editorial | in-brief | introduction |
332
+ letter | meeting-report | news | obituary |
333
+ oration | other | product-review |
334
+ research-article | retraction | reply |
335
+ review-article" >
336
+
337
+
338
+ <!-- ============================================================= -->
339
+ <!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
340
+ <!-- ============================================================= -->
341
+
342
+
343
+ <!-- DTD VERSION -->
344
+ <!-- What version of this DTD was used to make
345
+ the document instance under consideration.
346
+ Note that this is a fixed value that should
347
+ change every time the DTD changes versions or
348
+ revisions. -->
349
+ <!ENTITY % dtd-version
350
+ "dtd-version
351
+ CDATA #FIXED '1.0'" >
352
+
353
+
354
+
355
+ <!-- ARTICLE ATTRIBUTES -->
356
+ <!-- Attributes for the top-level element
357
+ <article> -->
358
+ <!ENTITY % article-atts
359
+ "article-type
360
+ (%article-types;) #IMPLIED
361
+ %dtd-version;
362
+ xml:lang NMTOKEN 'EN'
363
+ %XLINK.xmlns.attrib;
364
+ %MATHML.xmlns.attrib;" >
365
+
366
+
367
+ <!-- RESPONSE ATTRIBUTES -->
368
+ <!-- Attributes for the <response> element -->
369
+ <!ENTITY % response-atts
370
+ "response-type
371
+ CDATA #IMPLIED
372
+ xml:lang NMTOKEN 'EN'" >
373
+
374
+
375
+ <!-- ============================================================= -->
376
+ <!-- JOURNAL ARTICLE ELEMENTS -->
377
+ <!-- ============================================================= -->
378
+
379
+
380
+ <!-- ARTICLE MODEL (LIMITED) -->
381
+ <!ENTITY % article-short-model
382
+ "front, body?, back?" >
383
+
384
+
385
+ <!-- ARTICLE MODEL WITH SUBARTICLE OR RESPONSE -->
386
+ <!ENTITY % article-full-model
387
+ "front, body?, back?,
388
+ (sub-article* | response*)" >
389
+
390
+
391
+ <!-- ARTICLE -->
392
+ <!-- The complete content of a journal article.
393
+ An article is potentially divided into
394
+ four (more typically three) parts: 1) the
395
+ Front Matter (article metadata or header),
396
+ the body of the article (main content), any
397
+ ancillary information such as a glossary or
398
+ appendix, and (the least common) a
399
+ response, that is a commentary on the
400
+ article itself. -->
401
+ <!ELEMENT article (%article-full-model;) >
402
+
403
+ <!-- article-type
404
+ What kind of article is this?
405
+ Note: When the article is a commentary on
406
+ another article, for example a correction or
407
+ addendum, this attribute is metadata for the
408
+ commentary itself, it does NOT define the
409
+ kind of article that is being corrected or
410
+ amended.
411
+ Authoring Note: All articles
412
+ should have types assigned if possible.
413
+ abstract The article itself is an
414
+ abstract (of a paper or
415
+ presentation), usually that
416
+ has been presented or published
417
+ separately.
418
+ addendum A published item that adds
419
+ additional information or
420
+ clarification to another item
421
+ Similar value "correction"
422
+ corrects an error in previously
423
+ published material
424
+ announcement
425
+ Material announced in the
426
+ publication (may or may not be
427
+ directly related to the pub)
428
+ article-commentary
429
+ An item whose subject or focus
430
+ is another article or articles;
431
+ this article comments on the
432
+ other article(s) (For example,
433
+ for a controversial article, the
434
+ editors of the publication
435
+ might invite an author of the
436
+ opposing opinion to comment on
437
+ the first article, and publish
438
+ the two together.)
439
+ book-review
440
+ Review or analysis of one or more
441
+ printed or online books (Note
442
+ that product reviews are a
443
+ separate type.)
444
+ books-received
445
+ Notification of items such as
446
+ books that have been received
447
+ by the publication for review
448
+ or other consideration
449
+ brief-report
450
+ A short and/or rapid announcement
451
+ of research results
452
+ calendar A list of events
453
+ case-report
454
+ Case study, case report, or other
455
+ description of a case
456
+ correction A modification, or
457
+ correction of previously
458
+ published material (sometimes
459
+ called "errata") Similar value
460
+ "addendum" merely adds to
461
+ previously published material
462
+ discussion Invited discussion related to a
463
+ specific article or issue
464
+ editorial Opinion piece, policy statement,
465
+ or general commentary, typically
466
+ written by staff of the
467
+ publication. Note: similar value
468
+ "article-commentary" is reserved
469
+ for a commentary on a specific
470
+ article or articles.
471
+ in-brief Summary of items in the current
472
+ issue
473
+ introduction
474
+ An introduction to the
475
+ publication, a series of articles
476
+ within the publication, etc.,
477
+ typically for a special section
478
+ or issue
479
+ letter Letter to the publication,
480
+ typically commenting upon a
481
+ published item
482
+ meeting-report
483
+ Report of a conference,
484
+ symposium, or meeting
485
+ news News item
486
+ obituary Announcement of a death or
487
+ appreciation of a colleague
488
+ who has recently died
489
+ oration Reprint of a speech or oral
490
+ presentation
491
+ other Not any of the article types
492
+ explicitly named in this list
493
+ product-review
494
+ Description, analysis, or review
495
+ of a product or service, for
496
+ example a software package (note
497
+ that book review is a separate
498
+ type)
499
+ reply Reply to a letter or commentary,
500
+ typically by the original
501
+ author commenting upon the
502
+ comments
503
+ research-article
504
+ Research article
505
+ retraction Retraction of previously
506
+ published material
507
+ review-article
508
+ Review or state-of-the-art
509
+ summary article
510
+ dtd-version
511
+ Which version of the DTD does this article
512
+ use? The value is a #FIXED attribute, so
513
+ the entire attribute definition is defined
514
+ in a Parameter Entity, so the next version
515
+ of the DTD can use a different #FIXED value.
516
+ xml:lang The language in which the value of the
517
+ element is expressed. Recommended best
518
+ practice is to use values as defined in
519
+ RFC 1766, typically 2-letter language
520
+ codes such as "FR" (French), "EN" (English),
521
+ and "DE" (German). These values are NOT
522
+ case sensitive, so "EN" = "en". The values
523
+ may include hyphenated differentiators such
524
+ as "EN-AU" (Australian English) and "EN-US"
525
+ (United States English).
526
+ Processing and Conversion Note: All other
527
+ xml:lang attributes within the article
528
+ inherit the value set on <article> unless
529
+ explicitly set themselves with their own
530
+ "xml:lang" attribute.
531
+ xmlns Set up the pseudo-attributes for the
532
+ namespaces for any namespaces used in this
533
+ DTD. Xlink and MathML are set up in the
534
+ MathML modules. These xmlns are called
535
+ here because certain older tools will not
536
+ work properly with namespaces unless they
537
+ are declared on the top level element.
538
+ The PEs are defined in the MathML modules. -->
539
+ <!ATTLIST article
540
+ %article-atts; >
541
+
542
+
543
+ <!-- ============================================================= -->
544
+ <!-- FRONT MATTER ELEMENTS -->
545
+ <!-- ============================================================= -->
546
+
547
+
548
+ <!-- FRONT MATTER MODEL -->
549
+ <!ENTITY % front-model "journal-meta?, article-meta,
550
+ (def-list | notes)*" >
551
+
552
+ <!-- FRONT MATTER -->
553
+ <!-- The metadata concerning an article, such as
554
+ the name and issue of the journal in which it
555
+ appears and the name and author(s) of the
556
+ article.
557
+ In some journal DTDs this is called the
558
+ header information, and it includes metadata
559
+ concerning the journal <journal-meta> and
560
+ metadata concerning the issue of the journal
561
+ and the individual article <article-meta>. -->
562
+ <!ELEMENT front (%front-model;) >
563
+
564
+
565
+ <!-- ============================================================= -->
566
+ <!-- BODY ELEMENTS -->
567
+ <!-- ============================================================= -->
568
+
569
+
570
+ <!-- BODY MODEL -->
571
+ <!-- Content model for the Body (main textual
572
+ content) of a journal article. -->
573
+ <!ENTITY % body-model "(%para-level;)*, (%sec-level;)*" >
574
+
575
+
576
+ <!-- BODY OF THE ARTICLE -->
577
+ <!-- The main textual portion of the article that
578
+ conveys the content. -->
579
+ <!ELEMENT body (%body-model;) >
580
+
581
+
582
+ <!-- ============================================================= -->
583
+ <!-- BACK MATTER ELEMENTS -->
584
+ <!-- ============================================================= -->
585
+
586
+
587
+ <!-- BACK MATTER MODEL -->
588
+ <!-- Content model for the Back Matter (ancillary
589
+ material such as appendices) of a journal
590
+ article. -->
591
+ <!ENTITY % back-model "title*, (%doc-back-matter-elements;)*" >
592
+
593
+
594
+ <!-- BACK MATTER -->
595
+ <!-- Ancillary or supporting material not included
596
+ as part of the main textual content of a
597
+ journal article, for example appendices and
598
+ acknowledgments. -->
599
+ <!ELEMENT back (%back-model;) >
600
+
601
+
602
+ <!-- ============================================================= -->
603
+ <!-- SUBARTICLE -->
604
+ <!-- ============================================================= -->
605
+
606
+
607
+ <!-- SUBARTICLE -->
608
+ <!-- An article that is completely contained
609
+ inside another article. Both the article and
610
+ the subarticle have their own metadata. The
611
+ article has at very least journal and issue
612
+ information and start and end pages; it may
613
+ have a title, author, or other metadata.
614
+ The subarticle has its own, independent
615
+ metadata, such as authors, that it
616
+ may not share with the article that
617
+ encloses it.
618
+ Conversion Note: "Superarticles" that contain
619
+ other articles rarely contain much content of
620
+ their own, perhaps just a title and
621
+ introductory paragraph.
622
+ Authoring Note: This construction is NOT to
623
+ be used for an article and its response, or
624
+ for a series of responses, even if the
625
+ original article to which the responses are
626
+ replying is elsewhere. -->
627
+ <!ELEMENT sub-article (%article-full-model;) >
628
+ <!-- article-type
629
+ What kind of article is this?
630
+ Note: When the article is a commentary on
631
+ another article, for example a correction or
632
+ addendum, this attribute is metadata for the
633
+ commentary itself, it does NOT define the
634
+ kind of article that is being corrected or
635
+ amended.
636
+ Authoring Note: All articles
637
+ should have types assigned if possible.
638
+ abstract The article itself is an
639
+ abstract (of a paper or
640
+ presentation), usually that
641
+ has been presented or published
642
+ separately.
643
+ addendum A published item that adds
644
+ additional information or
645
+ clarification to another item
646
+ Similar value "correction"
647
+ corrects an error in previously
648
+ published material
649
+ announcement
650
+ Material announced in the
651
+ publication (may or may not be
652
+ directly related to the pub)
653
+ article-commentary
654
+ An item whose subject or focus
655
+ is another article or articles;
656
+ this article comments on the
657
+ other article(s) (For example,
658
+ for a controversial article, the
659
+ editors of the publication
660
+ might invite an author of the
661
+ opposing opinion to comment on
662
+ the first article, and publish
663
+ the two together.)
664
+ book-review
665
+ Review or analysis of one or more
666
+ printed or online books (Note
667
+ that product reviews are a
668
+ separate type.)
669
+ books-received
670
+ Notification of items such as
671
+ books that have been received
672
+ by the publication for review
673
+ or other consideration
674
+ brief-report
675
+ A short and/or rapid announcement
676
+ of research results
677
+ calendar A list of events
678
+ case-report
679
+ Case study, case report, or other
680
+ description of a case
681
+ correction A modification, or
682
+ correction of previously
683
+ published material (sometimes
684
+ called "errata") Similar value
685
+ "addendum" merely adds to
686
+ previously published material
687
+ discussion Invited discussion related to a
688
+ specific article or issue
689
+ editorial Opinion piece, policy statement,
690
+ or general commentary, typically
691
+ written by staff of the
692
+ publication. Note: similar value
693
+ "article-commentary" is reserved
694
+ for a commentary on a specific
695
+ article or articles.
696
+ in-brief Summary of items in the current
697
+ issue
698
+ introduction
699
+ An introduction to the
700
+ publication, a series of articles
701
+ within the publication, etc.,
702
+ typically for a special section
703
+ or issue
704
+ letter Letter to the publication,
705
+ typically commenting upon a
706
+ published item
707
+ meeting-report
708
+ Report of a conference,
709
+ symposium, or meeting
710
+ news News item
711
+ obituary Announcement of a death or
712
+ appreciation of a colleague
713
+ who has recently died
714
+ oration Reprint of a speech or oral
715
+ presentation
716
+ other Not any of the article types
717
+ explicitly named in this list
718
+ product-review
719
+ Description, analysis, or review
720
+ of a product or service, for
721
+ example a software package (note
722
+ that book review is a separate
723
+ type)
724
+ reply Reply to a letter or commentary,
725
+ typically by the original
726
+ author commenting upon the
727
+ comments
728
+ research-article
729
+ Research article
730
+ retraction Retraction of previously
731
+ published material
732
+ review-article
733
+ Review or state-of-the-art
734
+ summary article
735
+ xml:lang The language in which the value of the
736
+ element is expressed. Recommended best
737
+ practice is to use values as defined in
738
+ RFC 1766, typically 2-letter language
739
+ codes such as "FR" (French), "EN" (English),
740
+ and "DE" (German). These values are NOT
741
+ case sensitive, so "EN" = "en". The values
742
+ may include hyphenated differentiators such
743
+ as "EN-AU" (Australian English) and "EN-US"
744
+ (United States English).
745
+ Processing and Conversion Note: All other
746
+ xml:lang attributes within the article
747
+ inherit the value set on <article> unless
748
+ explicitly set themselves with their own
749
+ "xml:lang" attribute. -->
750
+ <!ATTLIST sub-article
751
+ article-type
752
+ (%article-types;) #IMPLIED
753
+ xml:lang NMTOKEN "EN" >
754
+
755
+
756
+ <!-- ============================================================= -->
757
+ <!-- RESPONSE ELEMENTS -->
758
+ <!-- ============================================================= -->
759
+
760
+
761
+ <!-- RESPONSE -->
762
+ <!-- Reply, response, or commentary concerning the
763
+ journal article. In the typical case, the
764
+ response is included in the same XML package
765
+ as the original article, and thus attached
766
+ at the end of the article proper.
767
+ Authoring Note: Frequently a reply or
768
+ response is an article in its own right, not
769
+ included as part of the original article.
770
+ Such an article could use the
771
+ <related-article> element in the article
772
+ metadata to record the metadata for the
773
+ original article.
774
+ Conversion Note: This construction can also
775
+ be used for the pathological case, rarely
776
+ seen, in which several responses to an
777
+ article are lumped together into a single
778
+ container which is not the original article,
779
+ merely a collection of responses. In one
780
+ example we examined, the first two responses
781
+ were to an original article which was else-
782
+ where and the third response was a response
783
+ to the first two responses. -->
784
+ <!ELEMENT response (%article-short-model;) >
785
+
786
+ <!-- response-type
787
+ What kind of response is this?
788
+ Note: This does NOT define the kind of
789
+ article on which the response is commenting,
790
+ it is metadata for the response itself.
791
+ Authoring Note: Use of this attribute is not
792
+ to be encouraged. It was added to allow for
793
+ observed cases of a series of articles
794
+ being chained together as an introduction,
795
+ an article, and several responses.
796
+ xml:lang The language in which the value of the
797
+ element is expressed. Recommended best
798
+ practice is to use values as defined in
799
+ RFC 1766, typically 2-letter language
800
+ codes such as "FR" (French), "EN" (English),
801
+ and "DE" (German). These values are NOT
802
+ case sensitive, so "EN" = "en". The values
803
+ may include hyphenated differentiators such
804
+ as "EN-AU" (Australian English) and "EN-US"
805
+ (United States English).
806
+ Processing and Conversion Note: All other
807
+ xml:lang attributes within the article
808
+ inherit the value set on <article> unless
809
+ explicitly set themselves with their own
810
+ "xml:lang" attribute. -->
811
+ <!ATTLIST response
812
+ %response-atts; >
813
+
814
+
815
+ <!-- ================== End Journal Archiving and Interchange DTD -->