xml_jats_resolver 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1312) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +6 -0
  3. data/CHANGELOG.md +3 -0
  4. data/Gemfile +8 -0
  5. data/LICENSE.md +25 -0
  6. data/README.md +3 -0
  7. data/Rakefile +10 -0
  8. data/lib/dtd/archiving_dtd/1.0/dtd/XHTMLtablesetup.ent +247 -0
  9. data/lib/dtd/archiving_dtd/1.0/dtd/archivearticle.dtd +815 -0
  10. data/lib/dtd/archiving_dtd/1.0/dtd/archivecustomize.ent +583 -0
  11. data/lib/dtd/archiving_dtd/1.0/dtd/articlemeta.ent +1431 -0
  12. data/lib/dtd/archiving_dtd/1.0/dtd/backmatter.ent +216 -0
  13. data/lib/dtd/archiving_dtd/1.0/dtd/catalog.ent +76 -0
  14. data/lib/dtd/archiving_dtd/1.0/dtd/chars.ent +333 -0
  15. data/lib/dtd/archiving_dtd/1.0/dtd/checksum.md5 +83 -0
  16. data/lib/dtd/archiving_dtd/1.0/dtd/common.ent +1609 -0
  17. data/lib/dtd/archiving_dtd/1.0/dtd/display.ent +988 -0
  18. data/lib/dtd/archiving_dtd/1.0/dtd/format.ent +403 -0
  19. data/lib/dtd/archiving_dtd/1.0/dtd/htmltable.dtd +334 -0
  20. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsa.ent +173 -0
  21. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsb.ent +146 -0
  22. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsc.ent +49 -0
  23. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsn.ent +117 -0
  24. data/lib/dtd/archiving_dtd/1.0/dtd/isoamso.ent +77 -0
  25. data/lib/dtd/archiving_dtd/1.0/dtd/isoamsr.ent +205 -0
  26. data/lib/dtd/archiving_dtd/1.0/dtd/isobox.ent +67 -0
  27. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr1.ent +94 -0
  28. data/lib/dtd/archiving_dtd/1.0/dtd/isocyr2.ent +53 -0
  29. data/lib/dtd/archiving_dtd/1.0/dtd/isodia.ent +41 -0
  30. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk1.ent +1 -1
  31. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk2.ent +1 -1
  32. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk3.ent +70 -0
  33. data/lib/dtd/archiving_dtd/1.0/dtd/isogrk4.ent +1 -1
  34. data/lib/dtd/archiving_dtd/1.0/dtd/isolat1.ent +89 -0
  35. data/lib/dtd/archiving_dtd/1.0/dtd/isolat2.ent +148 -0
  36. data/lib/dtd/archiving_dtd/1.0/dtd/isomfrk.ent +79 -0
  37. data/lib/dtd/archiving_dtd/1.0/dtd/isomopf.ent +53 -0
  38. data/lib/dtd/archiving_dtd/1.0/dtd/isomscr.ent +79 -0
  39. data/lib/dtd/archiving_dtd/1.0/dtd/isonum.ent +103 -0
  40. data/lib/dtd/archiving_dtd/1.0/dtd/isopub.ent +110 -0
  41. data/lib/dtd/archiving_dtd/1.0/dtd/isotech.ent +183 -0
  42. data/lib/dtd/archiving_dtd/1.0/dtd/journalmeta.ent +269 -0
  43. data/lib/dtd/archiving_dtd/1.0/dtd/link.ent +417 -0
  44. data/lib/dtd/archiving_dtd/1.0/dtd/list.ent +361 -0
  45. data/lib/dtd/archiving_dtd/1.0/dtd/math.ent +220 -0
  46. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mathml2-qname-1.mod +275 -0
  47. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlalias.ent +564 -0
  48. data/lib/dtd/archiving_dtd/1.0/dtd/mathml/mmlextra.ent +128 -0
  49. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2-qname-1.mod +275 -0
  50. data/lib/dtd/archiving_dtd/1.0/dtd/mathml2.dtd +1960 -0
  51. data/lib/dtd/archiving_dtd/1.0/dtd/mathmlsetup.ent +141 -0
  52. data/lib/dtd/archiving_dtd/1.0/dtd/mmlalias.ent +564 -0
  53. data/lib/dtd/archiving_dtd/1.0/dtd/mmlextra.ent +128 -0
  54. data/lib/dtd/archiving_dtd/1.0/dtd/modules.ent +344 -0
  55. data/lib/dtd/archiving_dtd/1.0/dtd/notat.ent +147 -0
  56. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-exchange.ent +354 -0
  57. data/lib/dtd/archiving_dtd/1.0/dtd/oasis-tablesetup.ent +258 -0
  58. data/lib/dtd/archiving_dtd/1.0/dtd/para.ent +320 -0
  59. data/lib/dtd/archiving_dtd/1.0/dtd/phrase.ent +213 -0
  60. data/lib/dtd/archiving_dtd/1.0/dtd/readme.txt +247 -0
  61. data/lib/dtd/archiving_dtd/1.0/dtd/references.ent +559 -0
  62. data/lib/dtd/archiving_dtd/1.0/dtd/sampleminimal.xml +5 -0
  63. data/lib/dtd/archiving_dtd/1.0/dtd/samplesmall.xml +84 -0
  64. data/lib/dtd/archiving_dtd/1.0/dtd/section.ent +205 -0
  65. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsa.ent +173 -0
  66. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsb.ent +146 -0
  67. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsc.ent +49 -0
  68. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsn.ent +117 -0
  69. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamso.ent +77 -0
  70. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isoamsr.ent +205 -0
  71. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isobox.ent +67 -0
  72. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr1.ent +94 -0
  73. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isocyr2.ent +53 -0
  74. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isodia.ent +41 -0
  75. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk1.ent +1 -1
  76. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk2.ent +1 -1
  77. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk3.ent +70 -0
  78. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isogrk4.ent +1 -1
  79. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat1.ent +89 -0
  80. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isolat2.ent +148 -0
  81. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomfrk.ent +79 -0
  82. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomopf.ent +53 -0
  83. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isomscr.ent +79 -0
  84. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isonum.ent +103 -0
  85. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isopub.ent +110 -0
  86. data/lib/dtd/archiving_dtd/1.0/dtd/xmlchars/isotech.ent +183 -0
  87. data/lib/dtd/archiving_dtd/1.0/dtd/xmlspecchars.ent +274 -0
  88. data/lib/dtd/archiving_dtd/1.1/dtd/XHTMLtablesetup.ent +289 -0
  89. data/lib/dtd/archiving_dtd/1.1/dtd/archivearticle.dtd +819 -0
  90. data/lib/dtd/archiving_dtd/1.1/dtd/archivecustomize.ent +597 -0
  91. data/lib/dtd/archiving_dtd/1.1/dtd/articlemeta.ent +1464 -0
  92. data/lib/dtd/archiving_dtd/1.1/dtd/backmatter.ent +216 -0
  93. data/lib/dtd/archiving_dtd/1.1/dtd/catalog.ent +76 -0
  94. data/lib/dtd/archiving_dtd/1.1/dtd/chars.ent +340 -0
  95. data/lib/dtd/archiving_dtd/1.1/dtd/common.ent +1674 -0
  96. data/lib/dtd/archiving_dtd/1.1/dtd/display.ent +1334 -0
  97. data/lib/dtd/archiving_dtd/1.1/dtd/format.ent +401 -0
  98. data/lib/dtd/archiving_dtd/1.1/dtd/htmltable.dtd +334 -0
  99. data/lib/dtd/archiving_dtd/1.1/dtd/journalmeta.ent +283 -0
  100. data/lib/dtd/archiving_dtd/1.1/dtd/link.ent +475 -0
  101. data/lib/dtd/archiving_dtd/1.1/dtd/list.ent +416 -0
  102. data/lib/dtd/archiving_dtd/1.1/dtd/math.ent +288 -0
  103. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mathml2-qname-1.mod +1 -3
  104. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlalias.ent +1 -1
  105. data/lib/dtd/archiving_dtd/1.1/dtd/mathml/mmlextra.ent +1 -1
  106. data/lib/dtd/archiving_dtd/1.1/dtd/mathml2.dtd +1960 -0
  107. data/lib/dtd/archiving_dtd/1.1/dtd/mathmlsetup.ent +171 -0
  108. data/lib/dtd/archiving_dtd/1.1/dtd/modules.ent +349 -0
  109. data/lib/dtd/archiving_dtd/1.1/dtd/notat.ent +147 -0
  110. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-exchange.ent +354 -0
  111. data/lib/dtd/archiving_dtd/1.1/dtd/oasis-tablesetup.ent +298 -0
  112. data/lib/dtd/archiving_dtd/1.1/dtd/para.ent +368 -0
  113. data/lib/dtd/archiving_dtd/1.1/dtd/phrase.ent +244 -0
  114. data/lib/dtd/archiving_dtd/1.1/dtd/references.ent +560 -0
  115. data/lib/dtd/archiving_dtd/1.1/dtd/section.ent +202 -0
  116. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsa.ent +1 -1
  117. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsb.ent +1 -1
  118. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsc.ent +1 -1
  119. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsn.ent +1 -1
  120. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamso.ent +1 -1
  121. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isoamsr.ent +1 -1
  122. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isobox.ent +1 -1
  123. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr1.ent +1 -1
  124. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isocyr2.ent +1 -1
  125. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isodia.ent +1 -1
  126. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk1.ent +1 -1
  127. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk2.ent +1 -1
  128. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk3.ent +1 -1
  129. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isogrk4.ent +1 -1
  130. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat1.ent +1 -1
  131. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isolat2.ent +1 -1
  132. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomfrk.ent +1 -1
  133. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomopf.ent +1 -1
  134. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isomscr.ent +1 -1
  135. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isonum.ent +1 -1
  136. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isopub.ent +1 -1
  137. data/lib/dtd/archiving_dtd/1.1/dtd/xmlchars/isotech.ent +1 -1
  138. data/lib/dtd/archiving_dtd/1.1/dtd/xmlspecchars.ent +274 -0
  139. data/lib/dtd/archiving_dtd/2.0/dtd/Readme.txt +225 -0
  140. data/lib/dtd/archiving_dtd/2.0/dtd/XHTMLtablesetup.ent +309 -0
  141. data/lib/dtd/archiving_dtd/2.0/dtd/archivearticle.dtd +952 -0
  142. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-classes.ent +157 -0
  143. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-mixes.ent +306 -0
  144. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-models.ent +756 -0
  145. data/lib/dtd/archiving_dtd/2.0/dtd/archivecustom-modules.ent +116 -0
  146. data/lib/dtd/archiving_dtd/2.0/dtd/articlemeta.ent +1811 -0
  147. data/lib/dtd/archiving_dtd/2.0/dtd/backmatter.ent +277 -0
  148. data/lib/dtd/archiving_dtd/2.0/dtd/catalog.ent +115 -0
  149. data/lib/dtd/archiving_dtd/2.0/dtd/chars.ent +359 -0
  150. data/lib/dtd/archiving_dtd/2.0/dtd/common.ent +2790 -0
  151. data/lib/dtd/archiving_dtd/2.0/dtd/default-classes.ent +704 -0
  152. data/lib/dtd/archiving_dtd/2.0/dtd/default-mixes.ent +357 -0
  153. data/lib/dtd/archiving_dtd/2.0/dtd/display.ent +1468 -0
  154. data/lib/dtd/archiving_dtd/2.0/dtd/format.ent +412 -0
  155. data/lib/dtd/archiving_dtd/2.0/dtd/htmltable.dtd +334 -0
  156. data/lib/dtd/archiving_dtd/2.0/dtd/journalmeta.ent +341 -0
  157. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-classes.ent +200 -0
  158. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-mixes.ent +207 -0
  159. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-models.ent +859 -0
  160. data/lib/dtd/archiving_dtd/2.0/dtd/journalpubcustom-modules.ent +125 -0
  161. data/lib/dtd/archiving_dtd/2.0/dtd/journalpublishing.dtd +955 -0
  162. data/lib/dtd/archiving_dtd/2.0/dtd/link.ent +510 -0
  163. data/lib/dtd/archiving_dtd/2.0/dtd/list.ent +465 -0
  164. data/lib/dtd/archiving_dtd/2.0/dtd/math.ent +329 -0
  165. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mathml2-qname-1.mod +1 -3
  166. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlalias.ent +1 -1
  167. data/lib/dtd/archiving_dtd/2.0/dtd/mathml/mmlextra.ent +1 -1
  168. data/lib/dtd/archiving_dtd/2.0/dtd/mathml2.dtd +1960 -0
  169. data/lib/dtd/archiving_dtd/2.0/dtd/mathmlsetup.ent +191 -0
  170. data/lib/dtd/archiving_dtd/2.0/dtd/modules.ent +417 -0
  171. data/lib/dtd/archiving_dtd/2.0/dtd/nlmcitation.ent +124 -0
  172. data/lib/dtd/archiving_dtd/2.0/dtd/notat.ent +172 -0
  173. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-exchange.ent +354 -0
  174. data/lib/dtd/archiving_dtd/2.0/dtd/oasis-tablesetup.ent +308 -0
  175. data/lib/dtd/archiving_dtd/2.0/dtd/para.ent +420 -0
  176. data/lib/dtd/archiving_dtd/2.0/dtd/phrase.ent +278 -0
  177. data/lib/dtd/archiving_dtd/2.0/dtd/references.ent +726 -0
  178. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-green.xml +1 -0
  179. data/lib/dtd/archiving_dtd/2.0/dtd/samplesmall-pub.xml +1 -0
  180. data/lib/dtd/archiving_dtd/2.0/dtd/section.ent +220 -0
  181. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsa.ent +1 -1
  182. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsb.ent +1 -1
  183. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsc.ent +1 -1
  184. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsn.ent +1 -1
  185. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamso.ent +1 -1
  186. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isoamsr.ent +1 -1
  187. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isobox.ent +1 -1
  188. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr1.ent +1 -1
  189. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isocyr2.ent +1 -1
  190. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isodia.ent +1 -1
  191. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk1.ent +1 -1
  192. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk2.ent +1 -1
  193. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk3.ent +1 -1
  194. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isogrk4.ent +1 -1
  195. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat1.ent +1 -1
  196. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isolat2.ent +1 -1
  197. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomfrk.ent +1 -1
  198. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomopf.ent +1 -1
  199. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isomscr.ent +1 -1
  200. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isonum.ent +97 -0
  201. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isopub.ent +1 -1
  202. data/lib/dtd/archiving_dtd/2.0/dtd/xmlchars/isotech.ent +1 -1
  203. data/lib/dtd/archiving_dtd/2.0/dtd/xmlspecchars.ent +290 -0
  204. data/lib/dtd/archiving_dtd/2.1/dtd/ArchiveReadme.txt +283 -0
  205. data/lib/dtd/archiving_dtd/2.1/dtd/XHTMLtablesetup.ent +320 -0
  206. data/lib/dtd/archiving_dtd/2.1/dtd/archivearticle.dtd +981 -0
  207. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-classes.ent +173 -0
  208. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-mixes.ent +317 -0
  209. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-models.ent +777 -0
  210. data/lib/dtd/archiving_dtd/2.1/dtd/archivecustom-modules.ent +125 -0
  211. data/lib/dtd/archiving_dtd/2.1/dtd/articlemeta.ent +1816 -0
  212. data/lib/dtd/archiving_dtd/2.1/dtd/backmatter.ent +288 -0
  213. data/lib/dtd/archiving_dtd/2.1/dtd/catalog-v2.xml +577 -0
  214. data/lib/dtd/archiving_dtd/2.1/dtd/catalog.ent +179 -0
  215. data/lib/dtd/archiving_dtd/2.1/dtd/chars.ent +359 -0
  216. data/lib/dtd/archiving_dtd/2.1/dtd/common.ent +2991 -0
  217. data/lib/dtd/archiving_dtd/2.1/dtd/default-classes.ent +738 -0
  218. data/lib/dtd/archiving_dtd/2.1/dtd/default-mixes.ent +368 -0
  219. data/lib/dtd/archiving_dtd/2.1/dtd/display.ent +1480 -0
  220. data/lib/dtd/archiving_dtd/2.1/dtd/format.ent +412 -0
  221. data/lib/dtd/archiving_dtd/2.1/dtd/htmltable.dtd +334 -0
  222. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isobox.ent +61 -0
  223. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr1.ent +88 -0
  224. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isocyr2.ent +47 -0
  225. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isodia.ent +35 -0
  226. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat1.ent +83 -0
  227. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isolat2.ent +142 -0
  228. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isonum.ent +97 -0
  229. data/lib/dtd/archiving_dtd/2.1/dtd/iso8879/isopub.ent +105 -0
  230. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsa.ent +167 -0
  231. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsb.ent +143 -0
  232. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsc.ent +43 -0
  233. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsn.ent +114 -0
  234. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamso.ent +73 -0
  235. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isoamsr.ent +204 -0
  236. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isogrk3.ent +64 -0
  237. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomfrk.ent +75 -0
  238. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomopf.ent +49 -0
  239. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isomscr.ent +75 -0
  240. data/lib/dtd/archiving_dtd/2.1/dtd/iso9573-13/isotech.ent +182 -0
  241. data/lib/dtd/archiving_dtd/2.1/dtd/journalmeta.ent +328 -0
  242. data/lib/dtd/archiving_dtd/2.1/dtd/link.ent +521 -0
  243. data/lib/dtd/archiving_dtd/2.1/dtd/list.ent +496 -0
  244. data/lib/dtd/archiving_dtd/2.1/dtd/math.ent +328 -0
  245. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlalias.ent +564 -0
  246. data/lib/dtd/archiving_dtd/2.1/dtd/mathml/mmlextra.ent +122 -0
  247. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2-qname-1.mod +286 -0
  248. data/lib/dtd/archiving_dtd/2.1/dtd/mathml2.dtd +2206 -0
  249. data/lib/dtd/archiving_dtd/2.1/dtd/mathmlsetup.ent +280 -0
  250. data/lib/dtd/archiving_dtd/2.1/dtd/modules.ent +438 -0
  251. data/lib/dtd/archiving_dtd/2.1/dtd/notat.ent +172 -0
  252. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-exchange.ent +354 -0
  253. data/lib/dtd/archiving_dtd/2.1/dtd/oasis-tablesetup.ent +308 -0
  254. data/lib/dtd/archiving_dtd/2.1/dtd/para.ent +445 -0
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data/lib/dtd/archiving_dtd/2.1/dtd/sample-archiv-mathml.xml ADDED
@@ -0,0 +1,450 @@
1
+ <?xml version="1.0" ?>
2
+ <!DOCTYPE article SYSTEM "archivearticle.dtd">
3
+ <article>
4
+ <front>
5
+ <?mtl hellip?>
6
+ <!-- preformatted text, a code sample -->
7
+ <article-meta>
8
+ <title-group>
9
+ <article-title>Free energy reconstruction from nonequilibrium
10
+ single-molecule pulling experiments</article-title>
11
+ </title-group>
12
+ <contrib-group>
13
+ <contrib contrib-type="author">
14
+ <name>
15
+ <surname>Hummer</surname>
16
+ <given-names>Gerhard</given-names>
17
+ </name>
18
+ </contrib>
19
+ <contrib contrib-type="author">
20
+ <name>
21
+ <surname>Szabo</surname>
22
+ <given-names>Attila</given-names>
23
+ </name>
24
+ <aff>Laboratory of Chemical Physics, National Institute of
25
+ Diabetes and Digestive and Kidney Diseases, National Institutes of
26
+ Health, Bethesda, MD 20892-0520</aff>
27
+ </contrib>
28
+ </contrib-group>
29
+ <permissions>
30
+ <copyright-statement>Copyright &#x00A9; 2001, The National Academy
31
+ of Sciences</copyright-statement>
32
+ <copyright-year>2001</copyright-year>
33
+ </permissions>
34
+ <related-article xmlns:xlink="http://www.w3.org/1999/xlink"
35
+ xlink:href="11274379" related-article-type="commentary" vol="98"
36
+ page="3636">See commentary on page 3636.</related-article>
37
+ <abstract>
38
+ <p>Laser tweezers and atomic force microscopes are increasingly
39
+ used to probe the interactions and mechanical properties of individual
40
+ molecules. Unfortunately, using such time-dependent perturbations to
41
+ force rare molecular events also drives the system away from
42
+ equilibrium. Nevertheless, we show how equilibrium free energy profiles
43
+ can be extracted rigorously from repeated nonequilibrium force
44
+ measurements on the basis of an extension of Jarzynski's remarkable
45
+ identity between free energies and the irreversible work.</p>
46
+ </abstract>
47
+ </article-meta>
48
+ <?mtl /hellip?>
49
+ </front>
50
+ <body>
51
+ <?mtl hellip?><?mtl /hellip?>
52
+ <p><?mtl hellip?><?mtl /hellip?> This can be seen in the following summation:
53
+ <mml:math>
54
+ <mml:semantics>
55
+ <mml:mrow>
56
+ <mml:munder>
57
+ <mml:mo>&sum;</mml:mo>
58
+ <mml:mi>m</mml:mi>
59
+ </mml:munder>
60
+ <mml:mrow>
61
+ <mml:msub>
62
+ <mml:mover accent='true'>
63
+ <mml:mi>p</mml:mi>
64
+ <mml:mo>&dot;</mml:mo>
65
+ </mml:mover>
66
+ <mml:mi>m</mml:mi>
67
+ </mml:msub>
68
+ <mml:mo>=</mml:mo>
69
+ <mml:mn>0</mml:mn>
70
+ </mml:mrow>
71
+ </mml:mrow>
72
+ </mml:semantics>
73
+ </mml:math>
74
+ </p>
75
+ <p>Sample 1:
76
+ <mml:math overflow="scroll">
77
+ <mml:mi>G</mml:mi>
78
+ </mml:math> over
79
+ <mml:math overflow="scroll">
80
+ <mml:mi>&#931;</mml:mi>
81
+ </mml:math> and
82
+ <mml:math overflow="scroll">
83
+ <mml:mover><mml:mi>&#931;</mml:mi><mml:mo>&#xaf;</mml:mo></mml:mover>
84
+ </mml:math></p>
85
+ <p>Sample 2:
86
+ <mml:math overflow="scroll">
87
+ <mml:mi>N</mml:mi>
88
+ </mml:math>,
89
+ with
90
+ <mml:math overflow="scroll">
91
+ <mml:mover><mml:mi>&#931;</mml:mi><mml:mo>&#xaf;</mml:mo></mml:mover>
92
+ </mml:math> being a disjoint copy of
93
+ <mml:math overflow="scroll">
94
+ <mml:mi>&#931;</mml:mi>
95
+ </mml:math></p>
96
+ <p>Sample 3:
97
+ <mml:math overflow="scroll">
98
+ <mml:mi>&#931;</mml:mi>
99
+ <mml:mo>=</mml:mo>
100
+ <mml:mfenced open="{" close="}">
101
+ <mml:mrow>
102
+ <mml:msub>
103
+ <mml:mi>a</mml:mi>
104
+ <mml:mn>1</mml:mn>
105
+ </mml:msub>
106
+ <mml:mo>,</mml:mo>
107
+ <mml:mi>&#8943;</mml:mi>
108
+ <mml:mo>,</mml:mo>
109
+ <mml:msub>
110
+ <mml:mi>a</mml:mi>
111
+ <mml:mi>n</mml:mi>
112
+ </mml:msub>
113
+ </mml:mrow>
114
+ </mml:mfenced>
115
+ </mml:math></p>
116
+ <p>Sample 4:
117
+ <mml:math overflow="scroll">
118
+ <mml:mrow>
119
+ <mml:msub>
120
+ <mml:mi>X</mml:mi>
121
+ <mml:msub>
122
+ <mml:mi>a</mml:mi>
123
+ <mml:mn>1</mml:mn>
124
+ </mml:msub>
125
+ </mml:msub>
126
+ <mml:mo>,</mml:mo>
127
+ <mml:mi>&#8943;</mml:mi>
128
+ <mml:mo>,</mml:mo>
129
+ <mml:msub>
130
+ <mml:mi>X</mml:mi>
131
+ <mml:msub>
132
+ <mml:mi>a</mml:mi>
133
+ <mml:mi>n</mml:mi>
134
+ </mml:msub>
135
+ </mml:msub>
136
+ </mml:mrow>
137
+ </mml:math></p>
138
+ <p>Sample 5:
139
+ <mml:math display="block" overflow="scroll">
140
+
141
+ <mml:mrow>
142
+
143
+ <mml:msub>
144
+ <mml:mi>X</mml:mi>
145
+ <mml:msub>
146
+ <mml:mi>a</mml:mi>
147
+ <mml:mi>i</mml:mi>
148
+ </mml:msub>
149
+ </mml:msub>
150
+ <mml:mo>&#8594;</mml:mo>
151
+ <mml:msub>
152
+ <mml:mi>a</mml:mi>
153
+ <mml:mi>i</mml:mi>
154
+ </mml:msub>
155
+ <mml:mo>&#8290;</mml:mo>
156
+
157
+ <mml:msup>
158
+ <mml:mfenced>
159
+ <mml:mrow>
160
+ <mml:msub>
161
+ <mml:mi>X</mml:mi>
162
+ <mml:msub>
163
+ <mml:mi>a</mml:mi>
164
+ <mml:mn>1</mml:mn>
165
+ </mml:msub>
166
+ </mml:msub>
167
+ <mml:mo>|</mml:mo>
168
+ <mml:mi>&#8943;</mml:mi>
169
+ <mml:mo>|</mml:mo>
170
+
171
+ <mml:msub>
172
+ <mml:mi>X</mml:mi>
173
+ <mml:msub>
174
+ <mml:mi>a</mml:mi>
175
+ <mml:mi>n</mml:mi>
176
+ </mml:msub>
177
+ </mml:msub>
178
+ </mml:mrow>
179
+ </mml:mfenced>
180
+ <mml:mo>*</mml:mo>
181
+ </mml:msup>
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+
183
+ <mml:mo>&#8290;</mml:mo>
184
+ <mml:msub><mml:mover><mml:mi>a</mml:mi><mml:mo>&#xaf;</mml:mo></mml:mover>
185
+ <mml:mi>i</mml:mi>
186
+ </mml:msub>
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+
188
+ <mml:mtext>&#8195;&#8195;</mml:mtext>
189
+ <mml:mfenced>
190
+ <mml:mrow>
191
+ <mml:mn>1</mml:mn>
192
+ <mml:mo>&#8804;</mml:mo>
193
+ <mml:mi>i</mml:mi>
194
+ <mml:mo>&lt;</mml:mo>
195
+ <mml:mi>n</mml:mi>
196
+ </mml:mrow>
197
+ </mml:mfenced>
198
+ <mml:mtext>.</mml:mtext>
199
+
200
+ </mml:mrow>
201
+
202
+ </mml:math></p>
203
+ <p>Sample 6:
204
+ <mml:math overflow="scroll">
205
+ <mml:msup>
206
+ <mml:mfenced><mml:mrow>
207
+ <mml:msub>
208
+ <mml:mi>X</mml:mi>
209
+ <mml:msub>
210
+ <mml:mi>a</mml:mi>
211
+ <mml:mn>1</mml:mn>
212
+ </mml:msub>
213
+ </mml:msub>
214
+ <mml:mo>|</mml:mo>
215
+ <mml:mi>&#8943;</mml:mi>
216
+ <mml:mo>|</mml:mo>
217
+ <mml:msub>
218
+ <mml:mi>X</mml:mi>
219
+ <mml:msub>
220
+ <mml:mi>a</mml:mi>
221
+ <mml:mi>n</mml:mi>
222
+ </mml:msub>
223
+ </mml:msub> </mml:mrow>
224
+ </mml:mfenced>
225
+ <mml:mo>*</mml:mo>
226
+ </mml:msup>
227
+ </mml:math></p>
228
+ <p>Sample 7:
229
+ <mml:math overflow="scroll">
230
+ <mml:msub>
231
+ <mml:mi>X</mml:mi>
232
+ <mml:mi>a</mml:mi>
233
+ </mml:msub>
234
+ <mml:mo>&#8594;</mml:mo>
235
+ <mml:mi>a</mml:mi>
236
+ <mml:mo>&#8290;</mml:mo>
237
+ <mml:msub>
238
+ <mml:mi fontstyle="normal">L</mml:mi>
239
+ <mml:mrow>
240
+ <mml:mi>X</mml:mi>
241
+ <mml:mo>,</mml:mo>
242
+ <mml:mi>a</mml:mi>
243
+ </mml:mrow>
244
+ </mml:msub>
245
+ <mml:mo>&#8290;</mml:mo><mml:mover><mml:mi>a</mml:mi><mml:mo>&#xaf;</mml:mo></mml:mover>
246
+ </mml:math></p>
247
+ <p>Sample 8:
248
+ <mml:math overflow="scroll">
249
+ <mml:mi>X</mml:mi>
250
+ <mml:mo>&#8594;</mml:mo>
251
+ <mml:mi>a</mml:mi>
252
+ <mml:mo>&#8290;</mml:mo>
253
+ <mml:msub>
254
+ <mml:mi>X</mml:mi>
255
+ <mml:mn>1</mml:mn>
256
+ </mml:msub>
257
+ <mml:mi>&#8943;</mml:mi>
258
+ <mml:msub>
259
+ <mml:mi>X</mml:mi>
260
+ <mml:mi>n</mml:mi>
261
+ </mml:msub>
262
+ <mml:mo>&#8290;</mml:mo><mml:mover><mml:mi>a</mml:mi><mml:mo>&#xaf;</mml:mo></mml:mover>
263
+ </mml:math></p>
264
+
265
+ <?mtl hellip?><?mtl /hellip?>
266
+ </body>
267
+ <back>
268
+ <?mtl hellip?>
269
+ <ref-list>
270
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+ in
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+ ></name><article-title>Health care for elderly Americans: evaluation of an adult day
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+ health care model</article-title><source>Medical
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+ Care</source><year>1976</year><volume>14</volume><fpage>700</fpage><lpage>708
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+ </name><name><surname>Morris</surname><given-names>JN</given-names></name><name><surname>Ruchlin</surname><given-names>
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440
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+ <month>2</month>
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445
+ </citation>
446
+ </ref>
447
+ </ref-list>
448
+ <?mtl /hellip?>
449
+ </back>
450
+ </article>
data/lib/dtd/archiving_dtd/2.1/dtd/samplesmall-archiv.xml ADDED
@@ -0,0 +1 @@
1
+ <?xml version="1.0" ?>