search_biomodel 1.0.0 → 1.0.1

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/nori_spec.rb

@@ -1,641 +0,0 @@
-require "spec_helper"
-
-describe Nori do
-
-  Nori::Parser::PARSERS.each do |parser, class_name|
-    context "using the :#{parser} parser" do
-
-      let(:parser) { parser }
-
-      it "should transform a simple tag with content" do
-        xml = "<tag>This is the contents</tag>"
-        parse(xml).should == { 'tag' => 'This is the contents' }
-      end
-
-      it "should work with cdata tags" do
-        xml = <<-END
-          <tag>
-          <![CDATA[
-            text inside cdata
-          ]]>
-          </tag>
-        END
-        parse(xml)["tag"].strip.should == "text inside cdata"
-      end
-
-      it "should transform a simple tag with attributes" do
-        xml = "<tag attr1='1' attr2='2'></tag>"
-        hash = { 'tag' => { '@attr1' => '1', '@attr2' => '2' } }
-        parse(xml).should == hash
-      end
-
-      it "should transform repeating siblings into an array" do
-        xml =<<-XML
-          <opt>
-            <user login="grep" fullname="Gary R Epstein" />
-            <user login="stty" fullname="Simon T Tyson" />
-          </opt>
-        XML
-
-        parse(xml)['opt']['user'].class.should == Array
-
-        hash = {
-          'opt' => {
-            'user' => [{
-              '@login'    => 'grep',
-              '@fullname' => 'Gary R Epstein'
-            },{
-              '@login'    => 'stty',
-              '@fullname' => 'Simon T Tyson'
-            }]
-          }
-        }
-
-        parse(xml).should == hash
-      end
-
-      it "should not transform non-repeating siblings into an array" do
-        xml =<<-XML
-          <opt>
-            <user login="grep" fullname="Gary R Epstein" />
-          </opt>
-        XML
-
-        parse(xml)['opt']['user'].class.should == Hash
-
-        hash = {
-          'opt' => {
-            'user' => {
-              '@login' => 'grep',
-              '@fullname' => 'Gary R Epstein'
-            }
-          }
-        }
-
-        parse(xml).should == hash
-      end
-
-      it "should prefix attributes with an @-sign to avoid problems with overwritten values" do
-        xml =<<-XML
-          <multiRef id="id1">
-            <login>grep</login>
-            <id>76737</id>
-          </multiRef>
-        XML
-
-        parse(xml)["multiRef"].should == { "login" => "grep", "@id" => "id1", "id" => "76737" }
-      end
-
-      context "without advanced typecasting" do
-        around do |example|
-          Nori.advanced_typecasting = false
-          example.run
-          Nori.advanced_typecasting = true
-        end
-
-        it "should not transform 'true'" do
-          parse("<value>true</value>")["value"].should == "true"
-        end
-
-        it "should not transform 'false'" do
-          parse("<value>false</value>")["value"].should == "false"
-        end
-
-        it "should not transform Strings matching the xs:time format" do
-          parse("<value>09:33:55Z</value>")["value"].should == "09:33:55Z"
-        end
-
-        it "should not transform Strings matching the xs:date format" do
-          parse("<value>1955-04-18-05:00</value>")["value"].should == "1955-04-18-05:00"
-        end
-
-        it "should not transform Strings matching the xs:dateTime format" do
-          parse("<value>1955-04-18T11:22:33-05:00</value>")["value"].should == "1955-04-18T11:22:33-05:00"
-        end
-      end
-
-      context "with advanced typecasting" do
-        around do |example|
-          Nori.advanced_typecasting = true
-          example.run
-          Nori.advanced_typecasting = false
-        end
-
-        it "should transform 'true' to TrueClass" do
-          parse("<value>true</value>")["value"].should == true
-        end
-
-        it "should transform 'false' to FalseClass" do
-          parse("<value>false</value>")["value"].should == false
-        end
-
-        it "should transform Strings matching the xs:time format to Time objects" do
-          parse("<value>09:33:55Z</value>")["value"].should == Time.parse("09:33:55Z")
-        end
-
-        it "should transform Strings matching the xs:date format to Date objects" do
-          parse("<value>1955-04-18-05:00</value>")["value"].should == Date.parse("1955-04-18-05:00")
-        end
-
-        it "should transform Strings matching the xs:dateTime format to DateTime objects" do
-          parse("<value>1955-04-18T11:22:33-05:00</value>")["value"].should ==
-            DateTime.parse("1955-04-18T11:22:33-05:00")
-        end
-
-        it "should not transform Strings containing an xs:time String and more" do
-          parse("<value>09:33:55Z is a time</value>")["value"].should == "09:33:55Z is a time"
-        end
-
-        it "should not transform Strings containing an xs:date String and more" do
-          parse("<value>1955-04-18-05:00 is a date</value>")["value"].should == "1955-04-18-05:00 is a date"
-        end
-
-        it "should not transform Strings containing an xs:dateTime String and more" do
-          parse("<value>1955-04-18T11:22:33-05:00 is a dateTime</value>")["value"].should ==
-            "1955-04-18T11:22:33-05:00 is a dateTime"
-        end
-      end
-
-      context "Parsing xml with text and attributes" do
-        before do
-          xml =<<-XML
-            <opt>
-              <user login="grep">Gary R Epstein</user>
-              <user>Simon T Tyson</user>
-            </opt>
-          XML
-          @data = parse(xml)
-        end
-
-        it "correctly parse text nodes" do
-          @data.should == {
-            'opt' => {
-              'user' => [
-                'Gary R Epstein',
-                'Simon T Tyson'
-              ]
-            }
-          }
-        end
-
-        it "be parse attributes for text node if present" do
-          @data['opt']['user'][0].attributes.should == {'login' => 'grep'}
-        end
-
-        it "default attributes to empty hash if not present" do
-          @data['opt']['user'][1].attributes.should == {}
-        end
-
-        it "add 'attributes' accessor methods to parsed instances of String" do
-          @data['opt']['user'][0].should respond_to(:attributes)
-          @data['opt']['user'][0].should respond_to(:attributes=)
-        end
-
-        it "not add 'attributes' accessor methods to all instances of String" do
-          "some-string".should_not respond_to(:attributes)
-          "some-string".should_not respond_to(:attributes=)
-        end
-      end
-
-      it "should typecast an integer" do
-        xml = "<tag type='integer'>10</tag>"
-        parse(xml)['tag'].should == 10
-      end
-
-      it "should typecast a true boolean" do
-        xml = "<tag type='boolean'>true</tag>"
-        parse(xml)['tag'].should be(true)
-      end
-
-      it "should typecast a false boolean" do
-        ["false"].each do |w|
-          parse("<tag type='boolean'>#{w}</tag>")['tag'].should be(false)
-        end
-      end
-
-      it "should typecast a datetime" do
-        xml = "<tag type='datetime'>2007-12-31 10:32</tag>"
-        parse(xml)['tag'].should == Time.parse( '2007-12-31 10:32' ).utc
-      end
-
-      it "should typecast a date" do
-        xml = "<tag type='date'>2007-12-31</tag>"
-        parse(xml)['tag'].should == Date.parse('2007-12-31')
-      end
-
-      xml_entities = {
-        "<" => "&lt;",
-        ">" => "&gt;",
-        '"' => "&quot;",
-        "'" => "&apos;",
-        "&" => "&amp;"
-      }
-
-      it "should unescape html entities" do
-        xml_entities.each do |k,v|
-          xml = "<tag>Some content #{v}</tag>"
-          parse(xml)['tag'].should =~ Regexp.new(k)
-        end
-      end
-
-      it "should unescape XML entities in attributes" do
-        xml_entities.each do |key, value|
-          xml = "<tag attr='Some content #{value}'></tag>"
-          parse(xml)['tag']['@attr'].should =~ Regexp.new(key)
-        end
-      end
-
-      it "should undasherize keys as tags" do
-        xml = "<tag-1>Stuff</tag-1>"
-        parse(xml).keys.should include('tag_1')
-      end
-
-      it "should undasherize keys as attributes" do
-        xml = "<tag1 attr-1='1'></tag1>"
-        parse(xml)['tag1'].keys.should include('@attr_1')
-      end
-
-      it "should undasherize keys as tags and attributes" do
-        xml = "<tag-1 attr-1='1'></tag-1>"
-        parse(xml).keys.should include('tag_1')
-        parse(xml)['tag_1'].keys.should include('@attr_1')
-      end
-
-      context "with strip_namespaces set to true" do
-        around do |example|
-          Nori.strip_namespaces = true
-          example.run
-          Nori.strip_namespaces = false
-        end
-
-        it "should strip the namespace from every tag" do
-          xml = '<soap:Envelope xmlns:soap="http://schemas.xmlsoap.org/soap/envelope/"></soap:Envelope>'
-          parse(xml).should have_key("Envelope")
-        end
-
-        it "converts namespaced entries to array elements" do
-          xml = <<-XML
-            <history
-                xmlns:ns10="http://ns10.example.com"
-                xmlns:ns11="http://ns10.example.com">
-              <ns10:case><ns10:name>a_name</ns10:name></ns10:case>
-              <ns11:case><ns11:name>another_name</ns11:name></ns11:case>
-            </history>
-          XML
-
-          expected_case = [{ "name" => "a_name" }, { "name" => "another_name" }]
-          parse(xml)["history"]["case"].should == expected_case
-        end
-      end
-
-      context "with convert_tags_to set to a custom formula" do
-        around do |example|
-          Nori.convert_tags_to { |tag| tag.snakecase.to_sym }
-          example.run
-          Nori.convert_tags_to(nil)
-        end
-
-        it "transforms the tags to snakecase Symbols" do
-          xml = '<userResponse><accountStatus>active</accountStatus></userResponse>'
-          parse(xml).should == { :user_response => { :account_status => "active" } }
-        end
-      end
-
-      it "should render nested content correctly" do
-        xml = "<root><tag1>Tag1 Content <em><strong>This is strong</strong></em></tag1></root>"
-        parse(xml)['root']['tag1'].should == "Tag1 Content <em><strong>This is strong</strong></em>"
-      end
-
-      it "should render nested content with splshould text nodes correctly" do
-        xml = "<root>Tag1 Content<em>Stuff</em> Hi There</root>"
-        parse(xml)['root'].should == "Tag1 Content<em>Stuff</em> Hi There"
-      end
-
-      it "should ignore attributes when a child is a text node" do
-        xml = "<root attr1='1'>Stuff</root>"
-        parse(xml).should == { "root" => "Stuff" }
-      end
-
-      it "should ignore attributes when any child is a text node" do
-        xml = "<root attr1='1'>Stuff <em>in italics</em></root>"
-        parse(xml).should == { "root" => "Stuff <em>in italics</em>" }
-      end
-
-      it "should correctly transform multiple children" do
-        xml = <<-XML
-        <user gender='m'>
-          <age type='integer'>35</age>
-          <name>Home Simpson</name>
-          <dob type='date'>1988-01-01</dob>
-          <joined-at type='datetime'>2000-04-28 23:01</joined-at>
-          <is-cool type='boolean'>true</is-cool>
-        </user>
-        XML
-
-        hash = {
-          "user" => {
-            "@gender"   => "m",
-            "age"       => 35,
-            "name"      => "Home Simpson",
-            "dob"       => Date.parse('1988-01-01'),
-            "joined_at" => Time.parse("2000-04-28 23:01"),
-            "is_cool"   => true
-          }
-        }
-
-        parse(xml).should == hash
-      end
-
-      it "should properly handle nil values (ActiveSupport Compatible)" do
-        topic_xml = <<-EOT
-          <topic>
-            <title></title>
-            <id type="integer"></id>
-            <approved type="boolean"></approved>
-            <written-on type="date"></written-on>
-            <viewed-at type="datetime"></viewed-at>
-            <content type="yaml"></content>
-            <parent-id></parent-id>
-            <nil_true nil="true"/>
-            <namespaced xsi:nil="true" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"/>
-          </topic>
-        EOT
-
-        expected_topic_hash = {
-          'title'      => nil,
-          'id'         => nil,
-          'approved'   => nil,
-          'written_on' => nil,
-          'viewed_at'  => nil,
-          'content'    => nil,
-          'parent_id'  => nil,
-          'nil_true'   => nil,
-          'namespaced' => nil
-        }
-        parse(topic_xml)["topic"].should == expected_topic_hash
-      end
-
-      it "should handle a single record from xml (ActiveSupport Compatible)" do
-        topic_xml = <<-EOT
-          <topic>
-            <title>The First Topic</title>
-            <author-name>David</author-name>
-            <id type="integer">1</id>
-            <approved type="boolean"> true </approved>
-            <replies-count type="integer">0</replies-count>
-            <replies-close-in type="integer">2592000000</replies-close-in>
-            <written-on type="date">2003-07-16</written-on>
-            <viewed-at type="datetime">2003-07-16T09:28:00+0000</viewed-at>
-            <content type="yaml">--- \n1: should be an integer\n:message: Have a nice day\narray: \n- should-have-dashes: true\n  should_have_underscores: true\n</content>
-            <author-email-address>david@loudthinking.com</author-email-address>
-            <parent-id></parent-id>
-            <ad-revenue type="decimal">1.5</ad-revenue>
-            <optimum-viewing-angle type="float">135</optimum-viewing-angle>
-            <resident type="symbol">yes</resident>
-          </topic>
-        EOT
-
-        expected_topic_hash = {
-          'title' => "The First Topic",
-          'author_name' => "David",
-          'id' => 1,
-          'approved' => true,
-          'replies_count' => 0,
-          'replies_close_in' => 2592000000,
-          'written_on' => Date.new(2003, 7, 16),
-          'viewed_at' => Time.utc(2003, 7, 16, 9, 28),
-          # Changed this line where the key is :message.  The yaml specifies this as a symbol, and who am I to change what you specify
-          # The line in ActiveSupport is
-          # 'content' => { 'message' => "Have a nice day", 1 => "should be an integer", "array" => [{ "should-have-dashes" => true, "should_have_underscores" => true }] },
-          'content' => { :message => "Have a nice day", 1 => "should be an integer", "array" => [{ "should-have-dashes" => true, "should_have_underscores" => true }] },
-          'author_email_address' => "david@loudthinking.com",
-          'parent_id' => nil,
-          'ad_revenue' => BigDecimal("1.50"),
-          'optimum_viewing_angle' => 135.0,
-          'resident' => :yes
-        }
-
-        parse(topic_xml)["topic"].each do |k,v|
-          v.should == expected_topic_hash[k]
-        end
-      end
-
-      it "should handle multiple records (ActiveSupport Compatible)" do
-        topics_xml = <<-EOT
-          <topics type="array">
-            <topic>
-              <title>The First Topic</title>
-              <author-name>David</author-name>
-              <id type="integer">1</id>
-              <approved type="boolean">false</approved>
-              <replies-count type="integer">0</replies-count>
-              <replies-close-in type="integer">2592000000</replies-close-in>
-              <written-on type="date">2003-07-16</written-on>
-              <viewed-at type="datetime">2003-07-16T09:28:00+0000</viewed-at>
-              <content>Have a nice day</content>
-              <author-email-address>david@loudthinking.com</author-email-address>
-              <parent-id nil="true"></parent-id>
-            </topic>
-            <topic>
-              <title>The Second Topic</title>
-              <author-name>Jason</author-name>
-              <id type="integer">1</id>
-              <approved type="boolean">false</approved>
-              <replies-count type="integer">0</replies-count>
-              <replies-close-in type="integer">2592000000</replies-close-in>
-              <written-on type="date">2003-07-16</written-on>
-              <viewed-at type="datetime">2003-07-16T09:28:00+0000</viewed-at>
-              <content>Have a nice day</content>
-              <author-email-address>david@loudthinking.com</author-email-address>
-              <parent-id></parent-id>
-            </topic>
-          </topics>
-        EOT
-
-        expected_topic_hash = {
-          'title' => "The First Topic",
-          'author_name' => "David",
-          'id' => 1,
-          'approved' => false,
-          'replies_count' => 0,
-          'replies_close_in' => 2592000000,
-          'written_on' => Date.new(2003, 7, 16),
-          'viewed_at' => Time.utc(2003, 7, 16, 9, 28),
-          'content' => "Have a nice day",
-          'author_email_address' => "david@loudthinking.com",
-          'parent_id' => nil
-        }
-
-        # puts Nori.parse(topics_xml)['topics'].first.inspect
-        parse(topics_xml)["topics"].first.each do |k,v|
-          v.should == expected_topic_hash[k]
-        end
-      end
-
-      it "should handle a single record from_xml with attributes other than type (ActiveSupport Compatible)" do
-        topic_xml = <<-EOT
-        <rsp stat="ok">
-          <photos page="1" pages="1" perpage="100" total="16">
-            <photo id="175756086" owner="55569174@N00" secret="0279bf37a1" server="76" title="Colored Pencil PhotoBooth Fun" ispublic="1" isfriend="0" isfamily="0"/>
-          </photos>
-        </rsp>
-        EOT
-
-        expected_topic_hash = {
-          '@id' => "175756086",
-          '@owner' => "55569174@N00",
-          '@secret' => "0279bf37a1",
-          '@server' => "76",
-          '@title' => "Colored Pencil PhotoBooth Fun",
-          '@ispublic' => "1",
-          '@isfriend' => "0",
-          '@isfamily' => "0",
-        }
-
-        parse(topic_xml)["rsp"]["photos"]["photo"].each do |k, v|
-          v.should == expected_topic_hash[k]
-        end
-      end
-
-      it "should handle an emtpy array (ActiveSupport Compatible)" do
-        blog_xml = <<-XML
-          <blog>
-            <posts type="array"></posts>
-          </blog>
-        XML
-        expected_blog_hash = {"blog" => {"posts" => []}}
-        parse(blog_xml).should == expected_blog_hash
-      end
-
-      it "should handle empty array with whitespace from xml (ActiveSupport Compatible)" do
-        blog_xml = <<-XML
-          <blog>
-            <posts type="array">
-            </posts>
-          </blog>
-        XML
-        expected_blog_hash = {"blog" => {"posts" => []}}
-        parse(blog_xml).should == expected_blog_hash
-      end
-
-      it "should handle array with one entry from_xml (ActiveSupport Compatible)" do
-        blog_xml = <<-XML
-          <blog>
-            <posts type="array">
-              <post>a post</post>
-            </posts>
-          </blog>
-        XML
-        expected_blog_hash = {"blog" => {"posts" => ["a post"]}}
-        parse(blog_xml).should == expected_blog_hash
-      end
-
-      it "should handle array with multiple entries from xml (ActiveSupport Compatible)" do
-        blog_xml = <<-XML
-          <blog>
-            <posts type="array">
-              <post>a post</post>
-              <post>another post</post>
-            </posts>
-          </blog>
-        XML
-        expected_blog_hash = {"blog" => {"posts" => ["a post", "another post"]}}
-        parse(blog_xml).should == expected_blog_hash
-      end
-
-      it "should handle file types (ActiveSupport Compatible)" do
-        blog_xml = <<-XML
-          <blog>
-            <logo type="file" name="logo.png" content_type="image/png">
-            </logo>
-          </blog>
-        XML
-        hash = parse(blog_xml)
-        hash.keys.should include('blog')
-        hash['blog'].keys.should include('logo')
-
-        file = hash['blog']['logo']
-        file.original_filename.should == 'logo.png'
-        file.content_type.should == 'image/png'
-      end
-
-      it "should handle file from xml with defaults (ActiveSupport Compatible)" do
-        blog_xml = <<-XML
-          <blog>
-            <logo type="file">
-            </logo>
-          </blog>
-        XML
-        file = parse(blog_xml)['blog']['logo']
-        file.original_filename.should == 'untitled'
-        file.content_type.should == 'application/octet-stream'
-      end
-
-      it "should handle xsd like types from xml (ActiveSupport Compatible)" do
-        bacon_xml = <<-EOT
-        <bacon>
-          <weight type="double">0.5</weight>
-          <price type="decimal">12.50</price>
-          <chunky type="boolean"> 1 </chunky>
-          <expires-at type="dateTime">2007-12-25T12:34:56+0000</expires-at>
-          <notes type="string"></notes>
-          <illustration type="base64Binary">YmFiZS5wbmc=</illustration>
-        </bacon>
-        EOT
-
-        expected_bacon_hash = {
-          'weight' => 0.5,
-          'chunky' => true,
-          'price' => BigDecimal("12.50"),
-          'expires_at' => Time.utc(2007,12,25,12,34,56),
-          'notes' => "",
-          'illustration' => "babe.png"
-        }
-
-        parse(bacon_xml)["bacon"].should == expected_bacon_hash
-      end
-
-      it "should let type trickle through when unknown (ActiveSupport Compatible)" do
-        product_xml = <<-EOT
-        <product>
-          <weight type="double">0.5</weight>
-          <image type="ProductImage"><filename>image.gif</filename></image>
-
-        </product>
-        EOT
-
-        expected_product_hash = {
-          'weight' => 0.5,
-          'image' => {'@type' => 'ProductImage', 'filename' => 'image.gif' },
-        }
-
-        parse(product_xml)["product"].should == expected_product_hash
-      end
-
-      it "should handle unescaping from xml (ActiveResource Compatible)" #do
-#        xml_string = '<person><bare-string>First &amp; Last Name</bare-string><pre-escaped-string>First &amp;amp; Last Name</pre-escaped-string></person>'
-#        expected_hash = {
-#          'bare_string'        => 'First & Last Name',
-#          'pre_escaped_string' => 'First &amp; Last Name'
-#        }
-#
-#        parse(xml_string)['person'].should == expected_hash
-#      end
-
-      it "handle an empty xml string" do
-        parse('').should == {}
-      end
-
-      # As returned in the response body by the unfuddle XML API when creating objects
-      it "handle an xml string containing a single space" do
-        parse(' ').should == {}
-      end
-
-    end
-  end
-
-  def parse(xml)
-    Nori.parse xml, parser
-  end
-
-end

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/nori/parser_spec.rb

@@ -1,37 +0,0 @@
-require "spec_helper"
-
-describe Nori::Parser do
-  let(:parser) { Nori::Parser }
-
-  describe "::PARSERS" do
-    it "should return a Hash of parser details" do
-      Nori::Parser::PARSERS.should == { :rexml => "REXML", :nokogiri => "Nokogiri" }
-    end
-  end
-
-  describe ".use" do
-    it "should default to REXML" do
-      parser.use.should == Nori::Parser::DEFAULT
-    end
-
-    it "should accept a parser to use" do
-      parser.use = :nokogiri
-      parser.use.should == :nokogiri
-
-      # reset to default
-      parser.use = Nori::Parser::DEFAULT
-      parser.use.should == Nori::Parser::DEFAULT
-    end
-
-    it "should raise an ArgumentError in case of an invalid parser" do
-      lambda { parser.use = :unknown }.should raise_error(ArgumentError)
-    end
-  end
-
-  describe ".parse" do
-    it "should load the parser to use and parse the given xml" do
-      parser.parse("<some>xml</some>").should == { "some" => "xml" }
-    end
-  end
-
-end

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/spec/spec_helper.rb

@@ -1,2 +0,0 @@
-require "bundler"
-Bundler.require :default, :development