RubyGems - search_biomodel - Versions diffs - 1.0.0 → 1.0.1 - Mend

search_biomodel 1.0.0 → 1.0.1

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data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document.rb DELETED Viewed

@@ -1,670 +0,0 @@
-require "helper"
-require 'uri'
-module Nokogiri
-  module XML
-    class TestDocument < Nokogiri::TestCase
-      URI = if URI.const_defined?(:DEFAULT_PARSER)
-              ::URI::DEFAULT_PARSER
-            else
-              ::URI
-            end
-      def setup
-        super
-        @xml = Nokogiri::XML.parse(File.read(XML_FILE), XML_FILE)
-      end
-      def test_root_set_to_nil
-        @xml.root = nil
-        assert_equal nil, @xml.root
-      end
-      def test_collect_namespaces
-        doc = Nokogiri::XML(<<-eoxml)
-        <xml>
-          <foo xmlns='hello'>
-            <bar xmlns:foo='world' />
-          </foo>
-        </xml>
-        eoxml
-        assert_equal({"xmlns"=>"hello", "xmlns:foo"=>"world"},
-          doc.collect_namespaces)
-      end
-      def test_subclass_initialize_modify # testing a segv
-        Class.new(Nokogiri::XML::Document) {
-          def initialize
-            super
-            body_node = Nokogiri::XML::Node.new "body", self
-            body_node.content = "stuff"
-            self.root = body_node
-          end
-        }.new
-      end
-      def test_create_text_node
-        txt = @xml.create_text_node 'foo'
-        assert_instance_of Nokogiri::XML::Text, txt
-        assert_equal 'foo', txt.text
-        assert_equal @xml, txt.document
-      end
-      def test_create_element
-        elm = @xml.create_element('foo')
-        assert_instance_of Nokogiri::XML::Element, elm
-        assert_equal 'foo', elm.name
-        assert_equal @xml, elm.document
-      end
-      def test_create_element_with_attributes
-        elm = @xml.create_element('foo',:a => "1")
-        assert_instance_of Nokogiri::XML::Element, elm
-        assert_instance_of Nokogiri::XML::Attr, elm.attributes["a"]
-        assert_equal "1", elm["a"]
-      end
-      def test_create_element_with_namespace
-        elm = @xml.create_element('foo',:'xmlns:foo' => 'http://tenderlovemaking.com')
-        assert_equal 'http://tenderlovemaking.com', elm.namespaces['xmlns:foo']
-      end
-      def test_create_element_with_content
-        elm = @xml.create_element('foo',"needs more xml/violence")
-        assert_equal "needs more xml/violence", elm.content
-      end
-      def test_create_cdata
-        cdata = @xml.create_cdata("abc")
-        assert_instance_of Nokogiri::XML::CDATA, cdata
-        assert_equal "abc", cdata.content
-      end
-      def test_pp
-        out = StringIO.new('')
-        assert_nothing_raised do
-          ::PP.pp @xml, out
-        end
-      end
-      def test_create_internal_subset_on_existing_subset
-        assert_not_nil @xml.internal_subset
-        assert_raises(RuntimeError) do
-          @xml.create_internal_subset('staff', nil, 'staff.dtd')
-        end
-      end
-      def test_create_internal_subset
-        xml = Nokogiri::XML('<root />')
-        assert_nil xml.internal_subset
-        xml.create_internal_subset('name', nil, 'staff.dtd')
-        ss = xml.internal_subset
-        assert_equal 'name', ss.name
-        assert_nil ss.external_id
-        assert_equal 'staff.dtd', ss.system_id
-      end
-      def test_external_subset
-        assert_nil @xml.external_subset
-        Dir.chdir(ASSETS_DIR) do
-          @xml = Nokogiri::XML.parse(File.read(XML_FILE), XML_FILE) { |cfg|
-            cfg.dtdload
-          }
-        end
-        assert @xml.external_subset
-      end
-      def test_create_external_subset_fails_with_existing_subset
-        assert_nil @xml.external_subset
-        Dir.chdir(ASSETS_DIR) do
-          @xml = Nokogiri::XML.parse(File.read(XML_FILE), XML_FILE) { |cfg|
-            cfg.dtdload
-          }
-        end
-        assert @xml.external_subset
-        assert_raises(RuntimeError) do
-          @xml.create_external_subset('staff', nil, 'staff.dtd')
-        end
-      end
-      def test_create_external_subset
-        dtd = @xml.create_external_subset('staff', nil, 'staff.dtd')
-        assert_nil dtd.external_id
-        assert_equal 'staff.dtd', dtd.system_id
-        assert_equal 'staff', dtd.name
-        assert_equal dtd, @xml.external_subset
-      end
-      def test_version
-        assert_equal '1.0', @xml.version
-      end
-      def test_add_namespace
-        assert_raise NoMethodError do
-          @xml.add_namespace('foo', 'bar')
-        end
-      end
-      def test_attributes
-        assert_raise NoMethodError do
-          @xml.attributes
-        end
-      end
-      def test_namespace
-        assert_raise NoMethodError do
-          @xml.namespace
-        end
-      end
-      def test_namespace_definitions
-        assert_raise NoMethodError do
-          @xml.namespace_definitions
-        end
-      end
-      def test_line
-        assert_raise NoMethodError do
-          @xml.line
-        end
-      end
-      def test_empty_node_converted_to_html_is_not_self_closing
-        doc = Nokogiri::XML('<a></a>')
-        assert_equal "<a></a>", doc.inner_html
-      end
-      def test_fragment
-        fragment = @xml.fragment
-        assert_equal 0, fragment.children.length
-      end
-      def test_add_child_fragment_with_single_node
-        doc = Nokogiri::XML::Document.new
-        fragment = doc.fragment('<hello />')
-        doc.add_child fragment
-        assert_equal '/hello', doc.at('//hello').path
-        assert_equal 'hello', doc.root.name
-      end
-      def test_add_child_fragment_with_multiple_nodes
-        doc = Nokogiri::XML::Document.new
-        fragment = doc.fragment('<hello /><goodbye />')
-        assert_raises(RuntimeError) do
-          doc.add_child fragment
-        end
-      end
-      def test_add_child_with_multiple_roots
-        assert_raises(RuntimeError) do
-          @xml << Node.new('foo', @xml)
-        end
-      end
-      def test_move_root_to_document_with_no_root
-        sender = Nokogiri::XML('<root>foo</root>')
-        newdoc = Nokogiri::XML::Document.new
-        newdoc.root = sender.root
-      end
-      def test_move_root_with_existing_root_gets_gcd
-        doc = Nokogiri::XML('<root>test</root>')
-        doc2 = Nokogiri::XML("<root>#{'x' * 5000000}</root>")
-        doc2.root = doc.root
-      end
-      def test_validate
-        assert_equal 44, @xml.validate.length
-      end
-      def test_validate_no_internal_subset
-        doc = Nokogiri::XML('<test/>')
-        assert_nil doc.validate
-      end
-      def test_clone
-        assert @xml.clone
-      end
-      def test_document_should_not_have_default_ns
-        doc = Nokogiri::XML::Document.new
-        assert_raises NoMethodError do
-          doc.default_namespace = 'http://innernet.com/'
-        end
-        assert_raises NoMethodError do
-          doc.add_namespace_definition('foo', 'bar')
-        end
-      end
-      def test_parse_handles_nil_gracefully
-        assert_nothing_raised do
-          @doc = Nokogiri::XML::Document.parse(nil)
-        end
-        assert_instance_of Nokogiri::XML::Document, @doc
-      end
-      def test_parse_takes_block
-        options = nil
-        Nokogiri::XML.parse(File.read(XML_FILE), XML_FILE) do |cfg|
-          options = cfg
-        end
-        assert options
-      end
-      def test_parse_yields_parse_options
-        options = nil
-        Nokogiri::XML.parse(File.read(XML_FILE), XML_FILE) do |cfg|
-          options = cfg
-          options.nonet.nowarning.dtdattr
-        end
-        assert options.nonet?
-        assert options.nowarning?
-        assert options.dtdattr?
-      end
-      def test_XML_takes_block
-        options = nil
-        Nokogiri::XML(File.read(XML_FILE), XML_FILE) do |cfg|
-          options = cfg
-          options.nonet.nowarning.dtdattr
-        end
-        assert options.nonet?
-        assert options.nowarning?
-        assert options.dtdattr?
-      end
-      def test_subclass
-        klass = Class.new(Nokogiri::XML::Document)
-        doc = klass.new
-        assert_instance_of klass, doc
-      end
-      def test_subclass_initialize
-        klass = Class.new(Nokogiri::XML::Document) do
-          attr_accessor :initialized_with
-          def initialize(*args)
-            @initialized_with = args
-          end
-        end
-        doc = klass.new("1.0", 1)
-        assert_equal ["1.0", 1], doc.initialized_with
-      end
-      def test_subclass_dup
-        klass = Class.new(Nokogiri::XML::Document)
-        doc = klass.new.dup
-        assert_instance_of klass, doc
-      end
-      def test_subclass_parse
-        klass = Class.new(Nokogiri::XML::Document)
-        doc = klass.parse(File.read(XML_FILE))
-        assert_equal @xml.to_s, doc.to_s
-        assert_instance_of klass, doc
-      end
-      def test_document_parse_method
-        xml = Nokogiri::XML::Document.parse(File.read(XML_FILE))
-        assert_equal @xml.to_s, xml.to_s
-      end
-      def test_encoding=
-        @xml.encoding = 'UTF-8'
-        assert_match 'UTF-8', @xml.to_xml
-        @xml.encoding = 'EUC-JP'
-        assert_match 'EUC-JP', @xml.to_xml
-      end
-      def test_namespace_should_not_exist
-        assert_raises(NoMethodError) {
-          @xml.namespace
-        }
-      end
-      def test_non_existant_function
-        # WTF.  I don't know why this is different between MRI and ffi.
-        # They should be the same...  Either way, raising an exception
-        # is the correct thing to do.
-        exception = RuntimeError
-        if Nokogiri::VERSION_INFO['libxml']['platform'] == 'jruby'
-          exception = Nokogiri::XML::XPath::SyntaxError
-        end
-        assert_raises(exception) {
-          @xml.xpath('//name[foo()]')
-        }
-      end
-      def test_ancestors
-        assert_equal 0, @xml.ancestors.length
-      end
-      def test_root_node_parent_is_document
-        parent = @xml.root.parent
-        assert_equal @xml, parent
-        assert_instance_of Nokogiri::XML::Document, parent
-      end
-      def test_xmlns_is_automatically_registered
-        doc = Nokogiri::XML(<<-eoxml)
-          <root xmlns="http://tenderlovemaking.com/">
-            <foo>
-              bar
-            </foo>
-          </root>
-        eoxml
-        assert_equal 1, doc.css('xmlns|foo').length
-        assert_equal 1, doc.css('foo').length
-        assert_equal 0, doc.css('|foo').length
-        assert_equal 1, doc.xpath('//xmlns:foo').length
-        assert_equal 1, doc.search('xmlns|foo').length
-        assert_equal 1, doc.search('//xmlns:foo').length
-        assert doc.at('xmlns|foo')
-        assert doc.at('//xmlns:foo')
-        assert doc.at('foo')
-      end
-      def test_xmlns_is_registered_for_nodesets
-        doc = Nokogiri::XML(<<-eoxml)
-          <root xmlns="http://tenderlovemaking.com/">
-            <foo>
-              <bar>
-                baz
-              </bar>
-            </foo>
-          </root>
-        eoxml
-        assert_equal 1, doc.css('xmlns|foo').css('xmlns|bar').length
-        assert_equal 1, doc.css('foo').css('bar').length
-        assert_equal 1, doc.xpath('//xmlns:foo').xpath('./xmlns:bar').length
-        assert_equal 1, doc.search('xmlns|foo').search('xmlns|bar').length
-        assert_equal 1, doc.search('//xmlns:foo').search('./xmlns:bar').length
-      end
-      def test_to_xml_with_indent
-        doc = Nokogiri::XML('<root><foo><bar/></foo></root>')
-        doc = Nokogiri::XML(doc.to_xml(:indent => 5))
-        assert_indent 5, doc
-      end
-      def test_write_xml_to_with_indent
-        io = StringIO.new
-        doc = Nokogiri::XML('<root><foo><bar/></foo></root>')
-        doc.write_xml_to io, :indent => 5
-        io.rewind
-        doc = Nokogiri::XML(io.read)
-        assert_indent 5, doc
-      end
-      # wtf...  osx's libxml sucks.
-      unless Nokogiri::LIBXML_VERSION =~ /^2\.6\./
-        def test_encoding
-          xml = Nokogiri::XML(File.read(XML_FILE), XML_FILE, 'UTF-8')
-          assert_equal 'UTF-8', xml.encoding
-        end
-      end
-      def test_document_has_errors
-        doc = Nokogiri::XML(<<-eoxml)
-          <foo><bar></foo>
-        eoxml
-        assert doc.errors.length > 0
-        doc.errors.each do |error|
-          assert_match error.message, error.inspect
-          assert_match error.message, error.to_s
-        end
-      end
-      def test_strict_document_throws_syntax_error
-        assert_raises(Nokogiri::XML::SyntaxError) {
-          Nokogiri::XML('<foo><bar></foo>', nil, nil, 0)
-        }
-        assert_raises(Nokogiri::XML::SyntaxError) {
-          Nokogiri::XML('<foo><bar></foo>') { |cfg|
-            cfg.strict
-          }
-        }
-        assert_raises(Nokogiri::XML::SyntaxError) {
-          Nokogiri::XML(StringIO.new('<foo><bar></foo>')) { |cfg|
-            cfg.strict
-          }
-        }
-      end
-      def test_XML_function
-        xml = Nokogiri::XML(File.read(XML_FILE), XML_FILE)
-        assert xml.xml?
-      end
-      def test_url
-        assert @xml.url
-        assert_equal XML_FILE, URI.unescape(@xml.url).sub('file:///', '')
-      end
-      def test_document_parent
-        xml = Nokogiri::XML(File.read(XML_FILE), XML_FILE)
-        assert_raises(NoMethodError) {
-          xml.parent
-        }
-      end
-      def test_document_name
-        xml = Nokogiri::XML(File.read(XML_FILE), XML_FILE)
-        assert_equal 'document', xml.name
-      end
-      def test_parse_can_take_io
-        xml = nil
-        File.open(XML_FILE, 'rb') { |f|
-          xml = Nokogiri::XML(f)
-        }
-        assert xml.xml?
-        set = xml.search('//employee')
-        assert set.length > 0
-      end
-      def test_search_on_empty_documents
-        doc = Nokogiri::XML::Document.new
-        ns = doc.search('//foo')
-        assert_equal 0, ns.length
-        ns = doc.css('foo')
-        assert_equal 0, ns.length
-        ns = doc.xpath('//foo')
-        assert_equal 0, ns.length
-      end
-      def test_bad_xpath_raises_syntax_error
-        assert_raises(XML::XPath::SyntaxError) {
-          @xml.xpath('\\')
-        }
-      end
-      def test_find_with_namespace
-        doc = Nokogiri::XML.parse(<<-eoxml)
-        <x xmlns:tenderlove='http://tenderlovemaking.com/'>
-          <tenderlove:foo awesome='true'>snuggles!</tenderlove:foo>
-        </x>
-        eoxml
-        ctx = Nokogiri::XML::XPathContext.new(doc)
-        ctx.register_ns 'tenderlove', 'http://tenderlovemaking.com/'
-        set = ctx.evaluate('//tenderlove:foo')
-        assert_equal 1, set.length
-        assert_equal 'foo', set.first.name
-        # It looks like only the URI is important:
-        ctx = Nokogiri::XML::XPathContext.new(doc)
-        ctx.register_ns 'america', 'http://tenderlovemaking.com/'
-        set = ctx.evaluate('//america:foo')
-        assert_equal 1, set.length
-        assert_equal 'foo', set.first.name
-        # Its so important that a missing slash will cause it to return nothing
-        ctx = Nokogiri::XML::XPathContext.new(doc)
-        ctx.register_ns 'america', 'http://tenderlovemaking.com'
-        set = ctx.evaluate('//america:foo')
-        assert_equal 0, set.length
-      end
-      def test_xml?
-        assert @xml.xml?
-      end
-      def test_document
-        assert @xml.document
-      end
-      def test_singleton_methods
-        assert node_set = @xml.search('//name')
-        assert node_set.length > 0
-        node = node_set.first
-        def node.test
-          'test'
-        end
-        assert node_set = @xml.search('//name')
-        assert_equal 'test', node_set.first.test
-      end
-      def test_multiple_search
-        assert node_set = @xml.search('//employee', '//name')
-        employees = @xml.search('//employee')
-        names = @xml.search('//name')
-        assert_equal(employees.length + names.length, node_set.length)
-      end
-      def test_node_set_index
-        assert node_set = @xml.search('//employee')
-        assert_equal(5, node_set.length)
-        assert node_set[4]
-        assert_nil node_set[5]
-      end
-      def test_search
-        assert node_set = @xml.search('//employee')
-        assert_equal(5, node_set.length)
-        node_set.each do |node|
-          assert_equal('employee', node.name)
-        end
-      end
-      def test_dump
-        assert @xml.serialize
-        assert @xml.to_xml
-      end
-      def test_dup
-        dup = @xml.dup
-        assert_instance_of Nokogiri::XML::Document, dup
-        assert dup.xml?, 'duplicate should be xml'
-      end
-      def test_new
-        doc = nil
-        assert_nothing_raised {
-          doc = Nokogiri::XML::Document.new
-        }
-        assert doc
-        assert doc.xml?
-        assert_nil doc.root
-      end
-      def test_set_root
-        doc = nil
-        assert_nothing_raised {
-          doc = Nokogiri::XML::Document.new
-        }
-        assert doc
-        assert doc.xml?
-        assert_nil doc.root
-        node = Nokogiri::XML::Node.new("b", doc) { |n|
-          n.content = 'hello world'
-        }
-        assert_equal('hello world', node.content)
-        doc.root = node
-        assert_equal(node, doc.root)
-      end
-      def test_remove_namespaces
-        doc = Nokogiri::XML <<-EOX
-          <root xmlns:a="http://a.flavorjon.es/" xmlns:b="http://b.flavorjon.es/">
-            <a:foo>hello from a</a:foo>
-            <b:foo>hello from b</b:foo>
-            <container xmlns:c="http://c.flavorjon.es/">
-              <c:foo c:attr='attr-value'>hello from c</c:foo>
-            </container>
-          </root>
-        EOX
-        namespaces = doc.root.namespaces
-        # assert on setup
-        assert_equal 2, doc.root.namespaces.length
-        assert_equal 3, doc.at_xpath("//container").namespaces.length
-        assert_equal 0, doc.xpath("//foo").length
-        assert_equal 1, doc.xpath("//a:foo").length
-        assert_equal 1, doc.xpath("//a:foo").length
-        assert_equal 1, doc.xpath("//x:foo", "x" => "http://c.flavorjon.es/").length
-        assert_match %r{foo c:attr}, doc.to_xml
-        doc.remove_namespaces!
-        assert_equal 0, doc.root.namespaces.length
-        assert_equal 0, doc.at_xpath("//container").namespaces.length
-        assert_equal 3, doc.xpath("//foo").length
-        assert_equal 0, doc.xpath("//a:foo", namespaces).length
-        assert_equal 0, doc.xpath("//a:foo", namespaces).length
-        assert_equal 0, doc.xpath("//x:foo", "x" => "http://c.flavorjon.es/").length
-        assert_match %r{foo attr}, doc.to_xml
-      end
-      def test_subset_is_decorated
-        x = Module.new do
-          def awesome!
-          end
-        end
-        util_decorate(@xml, x)
-        assert @xml.respond_to?(:awesome!)
-        assert node_set = @xml.search('//staff')
-        assert node_set.respond_to?(:awesome!)
-        assert subset = node_set.search('.//employee')
-        assert subset.respond_to?(:awesome!)
-        assert sub_subset = node_set.search('.//name')
-        assert sub_subset.respond_to?(:awesome!)
-      end
-      def test_decorator_is_applied
-        x = Module.new do
-          def awesome!
-          end
-        end
-        util_decorate(@xml, x)
-        assert @xml.respond_to?(:awesome!)
-        assert node_set = @xml.search('//employee')
-        assert node_set.respond_to?(:awesome!)
-        node_set.each do |node|
-          assert node.respond_to?(:awesome!), node.class
-        end
-        assert @xml.root.respond_to?(:awesome!)
-        assert @xml.children.respond_to?(:awesome!)
-      end
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/test/xml/test_document_encoding.rb DELETED Viewed

@@ -1,26 +0,0 @@
-require "helper"
-module Nokogiri
-  module XML
-    if RUBY_VERSION =~ /^1\.9/
-      class TestDocumentEncoding < Nokogiri::TestCase
-        def setup
-          super
-          @xml = Nokogiri::XML(File.read(XML_FILE), XML_FILE, 'UTF-8')
-        end
-        def test_url
-          assert_equal @xml.encoding, @xml.url.encoding.name
-        end
-        def test_encoding
-          assert_equal @xml.encoding, @xml.encoding.encoding.name
-        end
-        def test_dotted_version
-          assert_equal 'UTF-8', Nokogiri::LIBXML_VERSION.encoding.name
-        end
-      end
-    end
-  end
-end