search_biomodel 1.0.0 → 1.0.1

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Files changed (1054) hide show
  1. data/VERSION +1 -1
  2. data/search_biomodel.gemspec +1 -1051
  3. data/test/test_search_biomodel.rb +3 -4
  4. metadata +3 -1053
  5. data/search_biomodel/ruby/1.8/bin/jeweler +0 -19
  6. data/search_biomodel/ruby/1.8/bin/nokogiri +0 -19
  7. data/search_biomodel/ruby/1.8/bin/rackup +0 -19
  8. data/search_biomodel/ruby/1.8/bin/rake +0 -19
  9. data/search_biomodel/ruby/1.8/bin/rcov +0 -19
  10. data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
  11. data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
  12. data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
  13. data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
  14. data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
  15. data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
  16. data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
  17. data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
  18. data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
  19. data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
  20. data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
  21. data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
  22. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +0 -89
  23. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +0 -229
  24. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +0 -232
  25. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +0 -296
  26. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +0 -55364
  27. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +0 -109
  28. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +0 -23
  29. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +0 -197
  30. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +0 -160
  31. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +0 -63
  32. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +0 -334
  33. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +0 -13
  34. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +0 -40
  35. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +0 -39
  36. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +0 -225
  37. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +0 -125
  38. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +0 -150
  39. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +0 -546
  40. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +0 -39
  41. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +0 -77
  42. data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +0 -240
  43. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +0 -14
  44. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +0 -479
  45. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +0 -104
  46. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +0 -48
  47. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +0 -146
  48. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +0 -5
  49. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +0 -719
  50. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +0 -117
  51. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +0 -273
  52. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +0 -27
  53. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +0 -40
  54. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +0 -4
  55. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +0 -27
  56. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +0 -44
  57. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +0 -110
  58. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +0 -4
  59. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +0 -156
  60. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
  61. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +0 -9
  62. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +0 -1
  63. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +0 -7
  64. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +0 -55
  65. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +0 -2
  66. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +0 -20
  67. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +0 -81
  68. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +0 -11
  69. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +0 -26
  70. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +0 -45
  71. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +0 -19
  72. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +0 -55
  73. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +0 -5
  74. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +0 -63
  75. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +0 -28
  76. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +0 -23
  77. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +0 -53
  78. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +0 -17
  79. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +0 -160
  80. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +0 -77
  81. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +0 -49
  82. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +0 -46
  83. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +0 -2
  84. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +0 -5
  85. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
  86. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +0 -9
  87. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +0 -1
  88. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +0 -7
  89. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +0 -60
  90. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +0 -8
  91. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +0 -20
  92. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +0 -223
  93. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +0 -18
  94. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +0 -1
  95. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +0 -28
  96. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +0 -125
  97. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +0 -98
  98. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +0 -117
  99. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +0 -67
  100. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +0 -81
  101. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +0 -91
  102. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +0 -56
  103. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +0 -90
  104. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +0 -85
  105. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +0 -5
  106. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +0 -198
  107. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
  108. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +0 -16
  109. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +0 -15
  110. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
  111. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +0 -10
  112. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
  113. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +0 -1
  114. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +0 -232
  115. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +0 -164
  116. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +0 -142
  117. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +0 -55
  118. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +0 -117
  119. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +0 -128
  120. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +0 -284
  121. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +0 -135
  122. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +0 -125
  123. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +0 -95
  124. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +0 -39
  125. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +0 -12
  126. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +0 -27
  127. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +0 -19
  128. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +0 -8
  129. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +0 -166
  130. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +0 -22
  131. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +0 -59
  132. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +0 -20
  133. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +0 -216
  134. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +0 -81
  135. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +0 -5
  136. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +0 -103
  137. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +0 -86
  138. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +0 -13
  139. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +0 -9
  140. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +0 -71
  141. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +0 -102
  142. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +0 -20
  143. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +0 -158
  144. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +0 -12
  145. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +0 -54
  146. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +0 -149
  147. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +0 -5
  148. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +0 -6
  149. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +0 -70
  150. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +0 -382
  151. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +0 -6
  152. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +0 -42
  153. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +0 -9
  154. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +0 -31
  155. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +0 -49
  156. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +0 -244
  157. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +0 -36
  158. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +0 -50
  159. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +0 -31
  160. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +0 -82
  161. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +0 -59
  162. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +0 -28
  163. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +0 -30
  164. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +0 -55
  165. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +0 -13
  166. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +0 -12
  167. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +0 -14
  168. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +0 -12
  169. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +0 -39
  170. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +0 -20
  171. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +0 -8
  172. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +0 -8
  173. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +0 -87
  174. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +0 -61
  175. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +0 -43
  176. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +0 -29
  177. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +0 -41
  178. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +0 -42
  179. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +0 -162
  180. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +0 -9
  181. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +0 -42
  182. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +0 -42
  183. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +0 -44
  184. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +0 -42
  185. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +0 -42
  186. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +0 -39
  187. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +0 -14
  188. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +0 -287
  189. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +0 -95
  190. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +0 -38
  191. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +0 -38
  192. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +0 -110
  193. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +0 -224
  194. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +0 -5
  195. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +0 -48
  196. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +0 -12
  197. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +0 -20
  198. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +0 -19
  199. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +0 -9
  200. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +0 -7
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  372. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.c +0 -168
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  379. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.h +0 -10
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  405. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/tokenizer.rex +0 -55
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  407. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css.rb +0 -28
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  410. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/document.rb +0 -28
  411. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/element_description.rb +0 -81
  412. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/entity_lookup.rb +0 -16
  413. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/sax/parser_context.rb +0 -38
  414. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/io_callbacks.rb +0 -42
  415. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/libxml.rb +0 -420
  416. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/common_node.rb +0 -38
  417. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_elem_desc.rb +0 -24
  418. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_entity_desc.rb +0 -13
  419. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_alloc.rb +0 -16
  420. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attr.rb +0 -20
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  424. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_document.rb +0 -117
  425. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_dtd.rb +0 -28
  426. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element.rb +0 -26
  427. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element_content.rb +0 -17
  428. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_entity.rb +0 -32
  429. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_enumeration.rb +0 -12
  430. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node.rb +0 -28
  431. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node_set.rb +0 -53
  432. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_notation.rb +0 -11
  433. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_ns.rb +0 -15
  434. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_context.rb +0 -20
  435. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_input.rb +0 -19
  436. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_relax_ng.rb +0 -14
  437. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_handler.rb +0 -51
  438. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_push_parser_context.rb +0 -124
  439. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_schema.rb +0 -13
  440. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_syntax_error.rb +0 -31
  441. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_text_reader.rb +0 -12
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  443. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_object.rb +0 -35
  444. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_parser_context.rb +0 -20
  445. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xslt_stylesheet.rb +0 -13
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  447. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attr.rb +0 -41
  448. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attribute_decl.rb +0 -27
  449. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/cdata.rb +0 -19
  450. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/comment.rb +0 -18
  451. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/document.rb +0 -174
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  454. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_content.rb +0 -43
  455. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_decl.rb +0 -19
  456. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_decl.rb +0 -36
  457. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_reference.rb +0 -19
  458. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/namespace.rb +0 -44
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  462. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/reader.rb +0 -236
  463. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/relax_ng.rb +0 -85
  464. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser.rb +0 -143
  465. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser_context.rb +0 -79
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  469. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/text.rb +0 -18
  470. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath.rb +0 -9
  471. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath_context.rb +0 -153
  472. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xslt/stylesheet.rb +0 -77
  473. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/builder.rb +0 -35
  474. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document.rb +0 -209
  475. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document_fragment.rb +0 -41
  476. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/element_description.rb +0 -23
  477. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/entity_lookup.rb +0 -13
  478. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser.rb +0 -52
  479. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser_context.rb +0 -16
  480. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html.rb +0 -35
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  482. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/syntax_error.rb +0 -4
  483. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version.rb +0 -43
  484. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version_warning.rb +0 -14
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  486. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/attribute_decl.rb +0 -18
  487. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/builder.rb +0 -418
  488. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/cdata.rb +0 -11
  489. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/character_data.rb +0 -7
  490. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document.rb +0 -218
  491. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document_fragment.rb +0 -84
  492. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/dtd.rb +0 -22
  493. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_content.rb +0 -36
  494. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_decl.rb +0 -13
  495. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/entity_decl.rb +0 -19
  496. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/namespace.rb +0 -13
  497. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node/save_options.rb +0 -52
  498. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node.rb +0 -891
  499. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node_set.rb +0 -350
  500. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/notation.rb +0 -6
  501. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/parse_options.rb +0 -93
  502. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/character_data.rb +0 -18
  503. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/node.rb +0 -56
  504. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp.rb +0 -2
  505. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/processing_instruction.rb +0 -8
  506. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/reader.rb +0 -112
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  508. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/document.rb +0 -164
  509. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser.rb +0 -115
  510. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser_context.rb +0 -16
  511. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/push_parser.rb +0 -60
  512. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax.rb +0 -4
  513. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/schema.rb +0 -63
  514. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/syntax_error.rb +0 -47
  515. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/text.rb +0 -9
  516. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath/syntax_error.rb +0 -11
  517. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath.rb +0 -10
  518. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath_context.rb +0 -16
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  520. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xslt/stylesheet.rb +0 -25
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  522. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri.rb +0 -133
  523. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/xsd/xmlparser/nokogiri.rb +0 -90
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  916. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/LICENSE +0 -53
  917. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/Rakefile +0 -103
  918. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/THANKS +0 -110
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  921. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/editor-extensions/rcov.vim +0 -38
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  924. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/callsite.c +0 -234
  925. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/rcovrt.c +0 -264
  926. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/Makefile +0 -157
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  938. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/full_text_report.rb +0 -48
  939. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_coverage.rb +0 -274
  940. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/html_erb_template.rb +0 -62
  941. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters/text_coverage_diff.rb +0 -193
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  944. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/formatters.rb +0 -13
  945. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/lowlevel.rb +0 -146
  946. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/rcovtask.rb +0 -156
  947. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/detail.html.erb +0 -64
  948. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/index.html.erb +0 -93
  949. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery-1.3.2.min.js +0 -19
  950. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/jquery.tablesorter.min.js +0 -15
  951. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/print.css +0 -12
  952. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/rcov.js +0 -42
  953. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/templates/screen.css +0 -270
  954. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcov/version.rb +0 -10
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  956. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib/rcovrt.so +0 -0
  957. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/setup.rb +0 -1588
  958. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_01.rb +0 -7
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  962. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-new.rb +0 -17
  963. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/assets/sample_05-old.rb +0 -13
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  967. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/code_coverage_analyzer_test.rb +0 -220
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  970. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-gcc-original.out +0 -5
  971. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff-no-color.out +0 -12
  972. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/diff.out +0 -12
  973. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/gcc-text.out +0 -10
  974. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/expected_coverage/sample_03_rb.html +0 -651
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  977. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/file_statistics_test.rb +0 -471
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  979. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/test_helper.rb +0 -4
  980. data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/test/turn_off_rcovrt.rb +0 -4
  981. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.gitignore +0 -9
  982. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.rspec +0 -1
  983. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.travis.yml +0 -7
  984. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/.yardopts +0 -2
  985. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/CHANGELOG.md +0 -533
  986. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Gemfile +0 -4
  987. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/LICENSE +0 -20
  988. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/README.md +0 -39
  989. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/Rakefile +0 -40
  990. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/client.rb +0 -161
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  992. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/object.rb +0 -14
  993. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/core_ext/string.rb +0 -51
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  995. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/error.rb +0 -6
  996. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/global.rb +0 -83
  997. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/http/error.rb +0 -42
  998. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/fault.rb +0 -59
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  1000. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/soap/response.rb +0 -85
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  1005. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/lib/savon/wsdl/parser.rb +0 -96
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  1023. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/fixtures/wsdl/two_bindings.xml +0 -25
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  1034. data/search_biomodel/ruby/1.8/gems/savon-0.9.2/spec/savon/soap/xml_spec.rb +0 -341
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  1045. data/search_biomodel/ruby/1.8/specifications/gyoku-0.4.4.gemspec +0 -41
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  1048. data/search_biomodel/ruby/1.8/specifications/nokogiri-1.4.6.gemspec +0 -53
  1049. data/search_biomodel/ruby/1.8/specifications/nori-1.0.1.gemspec +0 -38
  1050. data/search_biomodel/ruby/1.8/specifications/pyu-ntlm-http-0.1.3.1.gemspec +0 -31
  1051. data/search_biomodel/ruby/1.8/specifications/rack-1.3.0.gemspec +0 -57
  1052. data/search_biomodel/ruby/1.8/specifications/rake-0.9.2.gemspec +0 -43
  1053. data/search_biomodel/ruby/1.8/specifications/rcov-0.9.9.gemspec +0 -34
  1054. data/search_biomodel/ruby/1.8/specifications/savon-0.9.2.gemspec +0 -55
@@ -1,168 +0,0 @@
1
- #include <xml_relax_ng.h>
2
-
3
- static void dealloc(xmlRelaxNGPtr schema)
4
- {
5
- NOKOGIRI_DEBUG_START(schema);
6
- xmlRelaxNGFree(schema);
7
- NOKOGIRI_DEBUG_END(schema);
8
- }
9
-
10
- /*
11
- * call-seq:
12
- * validate_document(document)
13
- *
14
- * Validate a Nokogiri::XML::Document against this RelaxNG schema.
15
- */
16
- static VALUE validate_document(VALUE self, VALUE document)
17
- {
18
- xmlDocPtr doc;
19
- xmlRelaxNGPtr schema;
20
- VALUE errors;
21
- xmlRelaxNGValidCtxtPtr valid_ctxt;
22
-
23
- Data_Get_Struct(self, xmlRelaxNG, schema);
24
- Data_Get_Struct(document, xmlDoc, doc);
25
-
26
- errors = rb_ary_new();
27
-
28
- valid_ctxt = xmlRelaxNGNewValidCtxt(schema);
29
-
30
- if(NULL == valid_ctxt) {
31
- /* we have a problem */
32
- rb_raise(rb_eRuntimeError, "Could not create a validation context");
33
- }
34
-
35
- #ifdef HAVE_XMLRELAXNGSETVALIDSTRUCTUREDERRORS
36
- xmlRelaxNGSetValidStructuredErrors(
37
- valid_ctxt,
38
- Nokogiri_error_array_pusher,
39
- (void *)errors
40
- );
41
- #endif
42
-
43
- xmlRelaxNGValidateDoc(valid_ctxt, doc);
44
-
45
- xmlRelaxNGFreeValidCtxt(valid_ctxt);
46
-
47
- return errors;
48
- }
49
-
50
- /*
51
- * call-seq:
52
- * read_memory(string)
53
- *
54
- * Create a new RelaxNG from the contents of +string+
55
- */
56
- static VALUE read_memory(VALUE klass, VALUE content)
57
- {
58
- xmlRelaxNGParserCtxtPtr ctx = xmlRelaxNGNewMemParserCtxt(
59
- (const char *)StringValuePtr(content),
60
- (int)RSTRING_LEN(content)
61
- );
62
- xmlRelaxNGPtr schema;
63
- VALUE errors = rb_ary_new();
64
- VALUE rb_schema;
65
-
66
- xmlSetStructuredErrorFunc((void *)errors, Nokogiri_error_array_pusher);
67
-
68
- #ifdef HAVE_XMLRELAXNGSETPARSERSTRUCTUREDERRORS
69
- xmlRelaxNGSetParserStructuredErrors(
70
- ctx,
71
- Nokogiri_error_array_pusher,
72
- (void *)errors
73
- );
74
- #endif
75
-
76
- schema = xmlRelaxNGParse(ctx);
77
-
78
- xmlSetStructuredErrorFunc(NULL, NULL);
79
- xmlRelaxNGFreeParserCtxt(ctx);
80
-
81
- if(NULL == schema) {
82
- xmlErrorPtr error = xmlGetLastError();
83
- if(error)
84
- Nokogiri_error_raise(NULL, error);
85
- else
86
- rb_raise(rb_eRuntimeError, "Could not parse document");
87
-
88
- return Qnil;
89
- }
90
-
91
- rb_schema = Data_Wrap_Struct(klass, 0, dealloc, schema);
92
- rb_iv_set(rb_schema, "@errors", errors);
93
-
94
- return rb_schema;
95
- }
96
-
97
- /*
98
- * call-seq:
99
- * from_document(doc)
100
- *
101
- * Create a new RelaxNG schema from the Nokogiri::XML::Document +doc+
102
- */
103
- static VALUE from_document(VALUE klass, VALUE document)
104
- {
105
- xmlDocPtr doc;
106
- xmlRelaxNGParserCtxtPtr ctx;
107
- xmlRelaxNGPtr schema;
108
- VALUE errors;
109
- VALUE rb_schema;
110
-
111
- Data_Get_Struct(document, xmlDoc, doc);
112
-
113
- /* In case someone passes us a node. ugh. */
114
- doc = doc->doc;
115
-
116
- ctx = xmlRelaxNGNewDocParserCtxt(doc);
117
-
118
- errors = rb_ary_new();
119
- xmlSetStructuredErrorFunc((void *)errors, Nokogiri_error_array_pusher);
120
-
121
- #ifdef HAVE_XMLRELAXNGSETPARSERSTRUCTUREDERRORS
122
- xmlRelaxNGSetParserStructuredErrors(
123
- ctx,
124
- Nokogiri_error_array_pusher,
125
- (void *)errors
126
- );
127
- #endif
128
-
129
- schema = xmlRelaxNGParse(ctx);
130
-
131
- xmlSetStructuredErrorFunc(NULL, NULL);
132
- if (! is_2_6_16()) {
133
- xmlRelaxNGFreeParserCtxt(ctx);
134
- }
135
-
136
- if(NULL == schema) {
137
- xmlErrorPtr error = xmlGetLastError();
138
- if(error)
139
- Nokogiri_error_raise(NULL, error);
140
- else
141
- rb_raise(rb_eRuntimeError, "Could not parse document");
142
-
143
- return Qnil;
144
- }
145
-
146
- if (is_2_6_16()) {
147
- xmlRelaxNGFreeParserCtxt(ctx);
148
- }
149
-
150
- rb_schema = Data_Wrap_Struct(klass, 0, dealloc, schema);
151
- rb_iv_set(rb_schema, "@errors", errors);
152
-
153
- return rb_schema;
154
- }
155
-
156
- VALUE cNokogiriXmlRelaxNG;
157
- void init_xml_relax_ng()
158
- {
159
- VALUE nokogiri = rb_define_module("Nokogiri");
160
- VALUE xml = rb_define_module_under(nokogiri, "XML");
161
- VALUE klass = rb_define_class_under(xml, "RelaxNG", cNokogiriXmlSchema);
162
-
163
- cNokogiriXmlRelaxNG = klass;
164
-
165
- rb_define_singleton_method(klass, "read_memory", read_memory, 1);
166
- rb_define_singleton_method(klass, "from_document", from_document, 1);
167
- rb_define_private_method(klass, "validate_document", validate_document, 1);
168
- }
@@ -1,9 +0,0 @@
1
- #ifndef NOKOGIRI_XML_RELAX_NG
2
- #define NOKOGIRI_XML_RELAX_NG
3
-
4
- #include <nokogiri.h>
5
-
6
- void init_xml_relax_ng();
7
-
8
- extern VALUE cNokogiriXmlRelaxNG;
9
- #endif
@@ -1,288 +0,0 @@
1
- #include <xml_sax_parser.h>
2
-
3
- int vasprintf (char **strp, const char *fmt, va_list ap);
4
-
5
- static ID id_start_document, id_end_document, id_start_element, id_end_element;
6
- static ID id_start_element_namespace, id_end_element_namespace;
7
- static ID id_comment, id_characters, id_xmldecl, id_error, id_warning;
8
- static ID id_cdata_block, id_cAttribute;
9
-
10
- #define STRING_OR_NULL(str) \
11
- (RTEST(str) ? StringValuePtr(str) : NULL)
12
-
13
- static void start_document(void * ctx)
14
- {
15
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
16
- VALUE doc = rb_iv_get(self, "@document");
17
-
18
- xmlParserCtxtPtr ctxt = NOKOGIRI_SAX_CTXT(ctx);
19
-
20
- if(NULL != ctxt && ctxt->html != 1) {
21
- if(ctxt->standalone != -1) { /* -1 means there was no declaration */
22
- VALUE encoding = ctxt->encoding ?
23
- NOKOGIRI_STR_NEW2(ctxt->encoding) :
24
- Qnil;
25
-
26
- VALUE version = ctxt->version ?
27
- NOKOGIRI_STR_NEW2(ctxt->version) :
28
- Qnil;
29
-
30
- VALUE standalone = Qnil;
31
-
32
- switch(ctxt->standalone)
33
- {
34
- case 0:
35
- standalone = NOKOGIRI_STR_NEW2("no");
36
- break;
37
- case 1:
38
- standalone = NOKOGIRI_STR_NEW2("yes");
39
- break;
40
- }
41
-
42
- rb_funcall(doc, id_xmldecl, 3, version, encoding, standalone);
43
- }
44
- }
45
-
46
- rb_funcall(doc, id_start_document, 0);
47
- }
48
-
49
- static void end_document(void * ctx)
50
- {
51
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
52
- VALUE doc = rb_iv_get(self, "@document");
53
- rb_funcall(doc, id_end_document, 0);
54
- }
55
-
56
- static void start_element(void * ctx, const xmlChar *name, const xmlChar **atts)
57
- {
58
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
59
- VALUE doc = rb_iv_get(self, "@document");
60
- VALUE attributes = rb_ary_new();
61
- const xmlChar * attr;
62
- int i = 0;
63
- if(atts) {
64
- while((attr = atts[i]) != NULL) {
65
- const xmlChar * val = atts[i+1];
66
- VALUE value = val != NULL ? NOKOGIRI_STR_NEW2(val) : Qnil;
67
- rb_ary_push(attributes, rb_ary_new3(2, NOKOGIRI_STR_NEW2(attr), value));
68
- i+=2;
69
- }
70
- }
71
-
72
- rb_funcall( doc,
73
- id_start_element,
74
- 2,
75
- NOKOGIRI_STR_NEW2(name),
76
- attributes
77
- );
78
- }
79
-
80
- static void end_element(void * ctx, const xmlChar *name)
81
- {
82
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
83
- VALUE doc = rb_iv_get(self, "@document");
84
- rb_funcall(doc, id_end_element, 1, NOKOGIRI_STR_NEW2(name));
85
- }
86
-
87
- static VALUE attributes_as_list(
88
- VALUE self,
89
- int nb_attributes,
90
- const xmlChar ** attributes)
91
- {
92
- VALUE list = rb_ary_new2((long)nb_attributes);
93
-
94
- VALUE attr_klass = rb_const_get(cNokogiriXmlSaxParser, id_cAttribute);
95
- if (attributes) {
96
- /* Each attribute is an array of [localname, prefix, URI, value, end] */
97
- int i;
98
- for (i = 0; i < nb_attributes * 5; i += 5) {
99
- VALUE argv[4], attribute;
100
-
101
- argv[0] = RBSTR_OR_QNIL(attributes[i + 0]); /* localname */
102
- argv[1] = RBSTR_OR_QNIL(attributes[i + 1]); /* prefix */
103
- argv[2] = RBSTR_OR_QNIL(attributes[i + 2]); /* URI */
104
-
105
- /* value */
106
- argv[3] = NOKOGIRI_STR_NEW((const char*)attributes[i+3],
107
- (attributes[i+4] - attributes[i+3]));
108
-
109
- attribute = rb_class_new_instance(4, argv, attr_klass);
110
- rb_ary_push(list, attribute);
111
- }
112
- }
113
-
114
- return list;
115
- }
116
-
117
- static void
118
- start_element_ns (
119
- void * ctx,
120
- const xmlChar * localname,
121
- const xmlChar * prefix,
122
- const xmlChar * uri,
123
- int nb_namespaces,
124
- const xmlChar ** namespaces,
125
- int nb_attributes,
126
- int nb_defaulted,
127
- const xmlChar ** attributes)
128
- {
129
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
130
- VALUE doc = rb_iv_get(self, "@document");
131
-
132
- VALUE attribute_list = attributes_as_list(self, nb_attributes, attributes);
133
-
134
- VALUE ns_list = rb_ary_new2((long)nb_namespaces);
135
-
136
- if (namespaces) {
137
- int i;
138
- for (i = 0; i < nb_namespaces * 2; i += 2)
139
- {
140
- rb_ary_push(ns_list,
141
- rb_ary_new3((long)2,
142
- RBSTR_OR_QNIL(namespaces[i + 0]),
143
- RBSTR_OR_QNIL(namespaces[i + 1])
144
- )
145
- );
146
- }
147
- }
148
-
149
- rb_funcall( doc,
150
- id_start_element_namespace,
151
- 5,
152
- NOKOGIRI_STR_NEW2(localname),
153
- attribute_list,
154
- RBSTR_OR_QNIL(prefix),
155
- RBSTR_OR_QNIL(uri),
156
- ns_list
157
- );
158
- }
159
-
160
- /**
161
- * end_element_ns was borrowed heavily from libxml-ruby.
162
- */
163
- static void
164
- end_element_ns (
165
- void * ctx,
166
- const xmlChar * localname,
167
- const xmlChar * prefix,
168
- const xmlChar * uri)
169
- {
170
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
171
- VALUE doc = rb_iv_get(self, "@document");
172
-
173
- rb_funcall(doc, id_end_element_namespace, 3,
174
- NOKOGIRI_STR_NEW2(localname),
175
- RBSTR_OR_QNIL(prefix),
176
- RBSTR_OR_QNIL(uri)
177
- );
178
- }
179
-
180
- static void characters_func(void * ctx, const xmlChar * ch, int len)
181
- {
182
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
183
- VALUE doc = rb_iv_get(self, "@document");
184
- VALUE str = NOKOGIRI_STR_NEW(ch, len);
185
- rb_funcall(doc, id_characters, 1, str);
186
- }
187
-
188
- static void comment_func(void * ctx, const xmlChar * value)
189
- {
190
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
191
- VALUE doc = rb_iv_get(self, "@document");
192
- VALUE str = NOKOGIRI_STR_NEW2(value);
193
- rb_funcall(doc, id_comment, 1, str);
194
- }
195
-
196
- static void warning_func(void * ctx, const char *msg, ...)
197
- {
198
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
199
- VALUE doc = rb_iv_get(self, "@document");
200
- char * message;
201
-
202
- va_list args;
203
- va_start(args, msg);
204
- vasprintf(&message, msg, args);
205
- va_end(args);
206
-
207
- rb_funcall(doc, id_warning, 1, NOKOGIRI_STR_NEW2(message));
208
- free(message);
209
- }
210
-
211
- static void error_func(void * ctx, const char *msg, ...)
212
- {
213
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
214
- VALUE doc = rb_iv_get(self, "@document");
215
- char * message;
216
-
217
- va_list args;
218
- va_start(args, msg);
219
- vasprintf(&message, msg, args);
220
- va_end(args);
221
-
222
- rb_funcall(doc, id_error, 1, NOKOGIRI_STR_NEW2(message));
223
- free(message);
224
- }
225
-
226
- static void cdata_block(void * ctx, const xmlChar * value, int len)
227
- {
228
- VALUE self = NOKOGIRI_SAX_SELF(ctx);
229
- VALUE doc = rb_iv_get(self, "@document");
230
- VALUE string = NOKOGIRI_STR_NEW(value, len);
231
- rb_funcall(doc, id_cdata_block, 1, string);
232
- }
233
-
234
- static void deallocate(xmlSAXHandlerPtr handler)
235
- {
236
- NOKOGIRI_DEBUG_START(handler);
237
- free(handler);
238
- NOKOGIRI_DEBUG_END(handler);
239
- }
240
-
241
- static VALUE allocate(VALUE klass)
242
- {
243
- xmlSAXHandlerPtr handler = calloc((size_t)1, sizeof(xmlSAXHandler));
244
-
245
- xmlSetStructuredErrorFunc(NULL, NULL);
246
-
247
- handler->startDocument = start_document;
248
- handler->endDocument = end_document;
249
- handler->startElement = start_element;
250
- handler->endElement = end_element;
251
- handler->startElementNs = start_element_ns;
252
- handler->endElementNs = end_element_ns;
253
- handler->characters = characters_func;
254
- handler->comment = comment_func;
255
- handler->warning = warning_func;
256
- handler->error = error_func;
257
- handler->cdataBlock = cdata_block;
258
- handler->initialized = XML_SAX2_MAGIC;
259
-
260
- return Data_Wrap_Struct(klass, NULL, deallocate, handler);
261
- }
262
-
263
- VALUE cNokogiriXmlSaxParser ;
264
- void init_xml_sax_parser()
265
- {
266
- VALUE nokogiri = rb_define_module("Nokogiri");
267
- VALUE xml = rb_define_module_under(nokogiri, "XML");
268
- VALUE sax = rb_define_module_under(xml, "SAX");
269
- VALUE klass = rb_define_class_under(sax, "Parser", rb_cObject);
270
-
271
- cNokogiriXmlSaxParser = klass;
272
-
273
- rb_define_alloc_func(klass, allocate);
274
-
275
- id_start_document = rb_intern("start_document");
276
- id_end_document = rb_intern("end_document");
277
- id_start_element = rb_intern("start_element");
278
- id_end_element = rb_intern("end_element");
279
- id_comment = rb_intern("comment");
280
- id_characters = rb_intern("characters");
281
- id_xmldecl = rb_intern("xmldecl");
282
- id_error = rb_intern("error");
283
- id_warning = rb_intern("warning");
284
- id_cdata_block = rb_intern("cdata_block");
285
- id_cAttribute = rb_intern("Attribute");
286
- id_start_element_namespace = rb_intern("start_element_namespace");
287
- id_end_element_namespace = rb_intern("end_element_namespace");
288
- }
@@ -1,39 +0,0 @@
1
- #ifndef NOKOGIRI_XML_SAX_PARSER
2
- #define NOKOGIRI_XML_SAX_PARSER
3
-
4
- #include <nokogiri.h>
5
-
6
- void init_xml_sax_parser();
7
-
8
- extern VALUE cNokogiriXmlSaxParser ;
9
-
10
- typedef struct _nokogiriSAXTuple {
11
- xmlParserCtxtPtr ctxt;
12
- VALUE self;
13
- } nokogiriSAXTuple;
14
-
15
- typedef nokogiriSAXTuple * nokogiriSAXTuplePtr;
16
-
17
- #define NOKOGIRI_SAX_SELF(_ctxt) \
18
- ((nokogiriSAXTuplePtr)(_ctxt))->self
19
-
20
- #define NOKOGIRI_SAX_CTXT(_ctxt) \
21
- ((nokogiriSAXTuplePtr)(_ctxt))->ctxt
22
-
23
- #define NOKOGIRI_SAX_TUPLE_NEW(_ctxt, _self) \
24
- nokogiri_sax_tuple_new(_ctxt, _self)
25
-
26
- static inline nokogiriSAXTuplePtr
27
- nokogiri_sax_tuple_new(xmlParserCtxtPtr ctxt, VALUE self)
28
- {
29
- nokogiriSAXTuplePtr tuple = malloc(sizeof(nokogiriSAXTuple));
30
- tuple->self = self;
31
- tuple->ctxt = ctxt;
32
- return tuple;
33
- }
34
-
35
- #define NOKOGIRI_SAX_TUPLE_DESTROY(_tuple) \
36
- free(_tuple) \
37
-
38
- #endif
39
-
@@ -1,199 +0,0 @@
1
- #include <xml_sax_parser_context.h>
2
-
3
- VALUE cNokogiriXmlSaxParserContext ;
4
-
5
- static void deallocate(xmlParserCtxtPtr ctxt)
6
- {
7
- NOKOGIRI_DEBUG_START(handler);
8
-
9
- ctxt->sax = NULL;
10
-
11
- xmlFreeParserCtxt(ctxt);
12
-
13
- NOKOGIRI_DEBUG_END(handler);
14
- }
15
-
16
- /*
17
- * call-seq:
18
- * parse_io(io, encoding)
19
- *
20
- * Parse +io+ object with +encoding+
21
- */
22
- static VALUE parse_io(VALUE klass, VALUE io, VALUE encoding)
23
- {
24
- xmlCharEncoding enc = (xmlCharEncoding)NUM2INT(encoding);
25
-
26
- xmlParserCtxtPtr ctxt = xmlCreateIOParserCtxt(
27
- NULL,
28
- NULL,
29
- (xmlInputReadCallback)io_read_callback,
30
- (xmlInputCloseCallback)io_close_callback,
31
- (void *)io,
32
- enc
33
- );
34
-
35
- return Data_Wrap_Struct(klass, NULL, deallocate, ctxt);
36
- }
37
-
38
- /*
39
- * call-seq:
40
- * parse_file(filename)
41
- *
42
- * Parse file given +filename+
43
- */
44
- static VALUE parse_file(VALUE klass, VALUE filename)
45
- {
46
- xmlParserCtxtPtr ctxt = xmlCreateFileParserCtxt(StringValuePtr(filename));
47
- return Data_Wrap_Struct(klass, NULL, deallocate, ctxt);
48
- }
49
-
50
- /*
51
- * call-seq:
52
- * parse_memory(data)
53
- *
54
- * Parse the XML stored in memory in +data+
55
- */
56
- static VALUE parse_memory(VALUE klass, VALUE data)
57
- {
58
- xmlParserCtxtPtr ctxt;
59
-
60
- if(NIL_P(data)) rb_raise(rb_eArgError, "data cannot be nil");
61
- if(!(int)RSTRING_LEN(data))
62
- rb_raise(rb_eRuntimeError, "data cannot be empty");
63
-
64
- ctxt = xmlCreateMemoryParserCtxt(
65
- StringValuePtr(data),
66
- (int)RSTRING_LEN(data)
67
- );
68
-
69
- return Data_Wrap_Struct(klass, NULL, deallocate, ctxt);
70
- }
71
-
72
- /*
73
- * call-seq:
74
- * parse_with(sax_handler)
75
- *
76
- * Use +sax_handler+ and parse the current document
77
- */
78
- static VALUE parse_with(VALUE self, VALUE sax_handler)
79
- {
80
- xmlParserCtxtPtr ctxt;
81
- xmlSAXHandlerPtr sax;
82
-
83
- if(!rb_obj_is_kind_of(sax_handler, cNokogiriXmlSaxParser))
84
- rb_raise(rb_eArgError, "argument must be a Nokogiri::XML::SAX::Parser");
85
-
86
- Data_Get_Struct(self, xmlParserCtxt, ctxt);
87
- Data_Get_Struct(sax_handler, xmlSAXHandler, sax);
88
-
89
- /* Free the sax handler since we'll assign our own */
90
- if(ctxt->sax && ctxt->sax != (xmlSAXHandlerPtr)&xmlDefaultSAXHandler)
91
- xmlFree(ctxt->sax);
92
-
93
- ctxt->sax = sax;
94
- ctxt->userData = (void *)NOKOGIRI_SAX_TUPLE_NEW(ctxt, sax_handler);
95
-
96
- xmlParseDocument(ctxt);
97
-
98
- if(NULL != ctxt->myDoc) xmlFreeDoc(ctxt->myDoc);
99
-
100
- NOKOGIRI_SAX_TUPLE_DESTROY(ctxt->userData);
101
-
102
- return Qnil ;
103
- }
104
-
105
- /*
106
- * call-seq:
107
- * replace_entities=(boolean)
108
- *
109
- * Should this parser replace entities? &amp; will get converted to '&' if
110
- * set to true
111
- */
112
- static VALUE set_replace_entities(VALUE self, VALUE value)
113
- {
114
- xmlParserCtxtPtr ctxt;
115
- Data_Get_Struct(self, xmlParserCtxt, ctxt);
116
-
117
- if(Qfalse == value)
118
- ctxt->replaceEntities = 0;
119
- else
120
- ctxt->replaceEntities = 1;
121
-
122
- return value;
123
- }
124
-
125
- /*
126
- * call-seq:
127
- * replace_entities
128
- *
129
- * Should this parser replace entities? &amp; will get converted to '&' if
130
- * set to true
131
- */
132
- static VALUE get_replace_entities(VALUE self)
133
- {
134
- xmlParserCtxtPtr ctxt;
135
- Data_Get_Struct(self, xmlParserCtxt, ctxt);
136
-
137
- if(0 == ctxt->replaceEntities)
138
- return Qfalse;
139
- else
140
- return Qtrue;
141
- }
142
-
143
- /*
144
- * call-seq: line
145
- *
146
- * Get the current line the parser context is processing.
147
- */
148
- static VALUE line(VALUE self)
149
- {
150
- xmlParserCtxtPtr ctxt;
151
- xmlParserInputPtr io;
152
-
153
- Data_Get_Struct(self, xmlParserCtxt, ctxt);
154
-
155
- io = ctxt->input;
156
- if(io)
157
- return INT2NUM(io->line);
158
-
159
- return Qnil;
160
- }
161
-
162
- /*
163
- * call-seq: column
164
- *
165
- * Get the current column the parser context is processing.
166
- */
167
- static VALUE column(VALUE self)
168
- {
169
- xmlParserCtxtPtr ctxt;
170
- xmlParserInputPtr io;
171
-
172
- Data_Get_Struct(self, xmlParserCtxt, ctxt);
173
-
174
- io = ctxt->input;
175
- if(io)
176
- return INT2NUM(io->col);
177
-
178
- return Qnil;
179
- }
180
-
181
- void init_xml_sax_parser_context()
182
- {
183
- VALUE nokogiri = rb_define_module("Nokogiri");
184
- VALUE xml = rb_define_module_under(nokogiri, "XML");
185
- VALUE sax = rb_define_module_under(xml, "SAX");
186
- VALUE klass = rb_define_class_under(sax, "ParserContext", rb_cObject);
187
-
188
- cNokogiriXmlSaxParserContext = klass;
189
-
190
- rb_define_singleton_method(klass, "io", parse_io, 2);
191
- rb_define_singleton_method(klass, "memory", parse_memory, 1);
192
- rb_define_singleton_method(klass, "file", parse_file, 1);
193
-
194
- rb_define_method(klass, "parse_with", parse_with, 1);
195
- rb_define_method(klass, "replace_entities=", set_replace_entities, 1);
196
- rb_define_method(klass, "replace_entities", get_replace_entities, 0);
197
- rb_define_method(klass, "line", line, 0);
198
- rb_define_method(klass, "column", column, 0);
199
- }
@@ -1,10 +0,0 @@
1
- #ifndef NOKOGIRI_XML_SAX_PARSER_CONTEXT
2
- #define NOKOGIRI_XML_SAX_PARSER_CONTEXT
3
-
4
- #include <nokogiri.h>
5
-
6
- extern VALUE cNokogiriXmlSaxParserContext;
7
-
8
- void init_xml_sax_parser_context();
9
-
10
- #endif