search_biomodel 1.0.0 → 1.0.1

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/Manifest.txt

@@ -1,283 +0,0 @@
-.autotest
-.gemtest
-CHANGELOG.ja.rdoc
-CHANGELOG.rdoc
-Manifest.txt
-README.ja.rdoc
-README.rdoc
-Rakefile
-bin/nokogiri
-ext/nokogiri/depend
-ext/nokogiri/extconf.rb
-ext/nokogiri/html_document.c
-ext/nokogiri/html_document.h
-ext/nokogiri/html_element_description.c
-ext/nokogiri/html_element_description.h
-ext/nokogiri/html_entity_lookup.c
-ext/nokogiri/html_entity_lookup.h
-ext/nokogiri/html_sax_parser_context.c
-ext/nokogiri/html_sax_parser_context.h
-ext/nokogiri/nokogiri.c
-ext/nokogiri/nokogiri.h
-ext/nokogiri/xml_attr.c
-ext/nokogiri/xml_attr.h
-ext/nokogiri/xml_attribute_decl.c
-ext/nokogiri/xml_attribute_decl.h
-ext/nokogiri/xml_cdata.c
-ext/nokogiri/xml_cdata.h
-ext/nokogiri/xml_comment.c
-ext/nokogiri/xml_comment.h
-ext/nokogiri/xml_document.c
-ext/nokogiri/xml_document.h
-ext/nokogiri/xml_document_fragment.c
-ext/nokogiri/xml_document_fragment.h
-ext/nokogiri/xml_dtd.c
-ext/nokogiri/xml_dtd.h
-ext/nokogiri/xml_element_content.c
-ext/nokogiri/xml_element_content.h
-ext/nokogiri/xml_element_decl.c
-ext/nokogiri/xml_element_decl.h
-ext/nokogiri/xml_encoding_handler.c
-ext/nokogiri/xml_encoding_handler.h
-ext/nokogiri/xml_entity_decl.c
-ext/nokogiri/xml_entity_decl.h
-ext/nokogiri/xml_entity_reference.c
-ext/nokogiri/xml_entity_reference.h
-ext/nokogiri/xml_io.c
-ext/nokogiri/xml_io.h
-ext/nokogiri/xml_libxml2_hacks.c
-ext/nokogiri/xml_libxml2_hacks.h
-ext/nokogiri/xml_namespace.c
-ext/nokogiri/xml_namespace.h
-ext/nokogiri/xml_node.c
-ext/nokogiri/xml_node.h
-ext/nokogiri/xml_node_set.c
-ext/nokogiri/xml_node_set.h
-ext/nokogiri/xml_processing_instruction.c
-ext/nokogiri/xml_processing_instruction.h
-ext/nokogiri/xml_reader.c
-ext/nokogiri/xml_reader.h
-ext/nokogiri/xml_relax_ng.c
-ext/nokogiri/xml_relax_ng.h
-ext/nokogiri/xml_sax_parser.c
-ext/nokogiri/xml_sax_parser.h
-ext/nokogiri/xml_sax_parser_context.c
-ext/nokogiri/xml_sax_parser_context.h
-ext/nokogiri/xml_sax_push_parser.c
-ext/nokogiri/xml_sax_push_parser.h
-ext/nokogiri/xml_schema.c
-ext/nokogiri/xml_schema.h
-ext/nokogiri/xml_syntax_error.c
-ext/nokogiri/xml_syntax_error.h
-ext/nokogiri/xml_text.c
-ext/nokogiri/xml_text.h
-ext/nokogiri/xml_xpath_context.c
-ext/nokogiri/xml_xpath_context.h
-ext/nokogiri/xslt_stylesheet.c
-ext/nokogiri/xslt_stylesheet.h
-lib/nokogiri.rb
-lib/nokogiri/css.rb
-lib/nokogiri/css/node.rb
-lib/nokogiri/css/parser.rb
-lib/nokogiri/css/parser.y
-lib/nokogiri/css/parser_extras.rb
-lib/nokogiri/css/syntax_error.rb
-lib/nokogiri/css/tokenizer.rb
-lib/nokogiri/css/tokenizer.rex
-lib/nokogiri/css/xpath_visitor.rb
-lib/nokogiri/decorators/slop.rb
-lib/nokogiri/ffi/encoding_handler.rb
-lib/nokogiri/ffi/html/document.rb
-lib/nokogiri/ffi/html/element_description.rb
-lib/nokogiri/ffi/html/entity_lookup.rb
-lib/nokogiri/ffi/html/sax/parser_context.rb
-lib/nokogiri/ffi/io_callbacks.rb
-lib/nokogiri/ffi/libxml.rb
-lib/nokogiri/ffi/structs/common_node.rb
-lib/nokogiri/ffi/structs/html_elem_desc.rb
-lib/nokogiri/ffi/structs/html_entity_desc.rb
-lib/nokogiri/ffi/structs/xml_alloc.rb
-lib/nokogiri/ffi/structs/xml_attr.rb
-lib/nokogiri/ffi/structs/xml_attribute.rb
-lib/nokogiri/ffi/structs/xml_buffer.rb
-lib/nokogiri/ffi/structs/xml_char_encoding_handler.rb
-lib/nokogiri/ffi/structs/xml_document.rb
-lib/nokogiri/ffi/structs/xml_dtd.rb
-lib/nokogiri/ffi/structs/xml_element.rb
-lib/nokogiri/ffi/structs/xml_element_content.rb
-lib/nokogiri/ffi/structs/xml_entity.rb
-lib/nokogiri/ffi/structs/xml_enumeration.rb
-lib/nokogiri/ffi/structs/xml_node.rb
-lib/nokogiri/ffi/structs/xml_node_set.rb
-lib/nokogiri/ffi/structs/xml_notation.rb
-lib/nokogiri/ffi/structs/xml_ns.rb
-lib/nokogiri/ffi/structs/xml_parser_context.rb
-lib/nokogiri/ffi/structs/xml_parser_input.rb
-lib/nokogiri/ffi/structs/xml_relax_ng.rb
-lib/nokogiri/ffi/structs/xml_sax_handler.rb
-lib/nokogiri/ffi/structs/xml_sax_push_parser_context.rb
-lib/nokogiri/ffi/structs/xml_schema.rb
-lib/nokogiri/ffi/structs/xml_syntax_error.rb
-lib/nokogiri/ffi/structs/xml_text_reader.rb
-lib/nokogiri/ffi/structs/xml_xpath_context.rb
-lib/nokogiri/ffi/structs/xml_xpath_object.rb
-lib/nokogiri/ffi/structs/xml_xpath_parser_context.rb
-lib/nokogiri/ffi/structs/xslt_stylesheet.rb
-lib/nokogiri/ffi/weak_bucket.rb
-lib/nokogiri/ffi/xml/attr.rb
-lib/nokogiri/ffi/xml/attribute_decl.rb
-lib/nokogiri/ffi/xml/cdata.rb
-lib/nokogiri/ffi/xml/comment.rb
-lib/nokogiri/ffi/xml/document.rb
-lib/nokogiri/ffi/xml/document_fragment.rb
-lib/nokogiri/ffi/xml/dtd.rb
-lib/nokogiri/ffi/xml/element_content.rb
-lib/nokogiri/ffi/xml/element_decl.rb
-lib/nokogiri/ffi/xml/entity_decl.rb
-lib/nokogiri/ffi/xml/entity_reference.rb
-lib/nokogiri/ffi/xml/namespace.rb
-lib/nokogiri/ffi/xml/node.rb
-lib/nokogiri/ffi/xml/node_set.rb
-lib/nokogiri/ffi/xml/processing_instruction.rb
-lib/nokogiri/ffi/xml/reader.rb
-lib/nokogiri/ffi/xml/relax_ng.rb
-lib/nokogiri/ffi/xml/sax/parser.rb
-lib/nokogiri/ffi/xml/sax/parser_context.rb
-lib/nokogiri/ffi/xml/sax/push_parser.rb
-lib/nokogiri/ffi/xml/schema.rb
-lib/nokogiri/ffi/xml/syntax_error.rb
-lib/nokogiri/ffi/xml/text.rb
-lib/nokogiri/ffi/xml/xpath.rb
-lib/nokogiri/ffi/xml/xpath_context.rb
-lib/nokogiri/ffi/xslt/stylesheet.rb
-lib/nokogiri/html.rb
-lib/nokogiri/html/builder.rb
-lib/nokogiri/html/document.rb
-lib/nokogiri/html/document_fragment.rb
-lib/nokogiri/html/element_description.rb
-lib/nokogiri/html/entity_lookup.rb
-lib/nokogiri/html/sax/parser.rb
-lib/nokogiri/html/sax/parser_context.rb
-lib/nokogiri/syntax_error.rb
-lib/nokogiri/version.rb
-lib/nokogiri/version_warning.rb
-lib/nokogiri/xml.rb
-lib/nokogiri/xml/attr.rb
-lib/nokogiri/xml/attribute_decl.rb
-lib/nokogiri/xml/builder.rb
-lib/nokogiri/xml/cdata.rb
-lib/nokogiri/xml/character_data.rb
-lib/nokogiri/xml/document.rb
-lib/nokogiri/xml/document_fragment.rb
-lib/nokogiri/xml/dtd.rb
-lib/nokogiri/xml/element_content.rb
-lib/nokogiri/xml/element_decl.rb
-lib/nokogiri/xml/entity_decl.rb
-lib/nokogiri/xml/namespace.rb
-lib/nokogiri/xml/node.rb
-lib/nokogiri/xml/node/save_options.rb
-lib/nokogiri/xml/node_set.rb
-lib/nokogiri/xml/notation.rb
-lib/nokogiri/xml/parse_options.rb
-lib/nokogiri/xml/pp.rb
-lib/nokogiri/xml/pp/character_data.rb
-lib/nokogiri/xml/pp/node.rb
-lib/nokogiri/xml/processing_instruction.rb
-lib/nokogiri/xml/reader.rb
-lib/nokogiri/xml/relax_ng.rb
-lib/nokogiri/xml/sax.rb
-lib/nokogiri/xml/sax/document.rb
-lib/nokogiri/xml/sax/parser.rb
-lib/nokogiri/xml/sax/parser_context.rb
-lib/nokogiri/xml/sax/push_parser.rb
-lib/nokogiri/xml/schema.rb
-lib/nokogiri/xml/syntax_error.rb
-lib/nokogiri/xml/text.rb
-lib/nokogiri/xml/xpath.rb
-lib/nokogiri/xml/xpath/syntax_error.rb
-lib/nokogiri/xml/xpath_context.rb
-lib/nokogiri/xslt.rb
-lib/nokogiri/xslt/stylesheet.rb
-lib/xsd/xmlparser/nokogiri.rb
-tasks/cross_compile.rb
-tasks/test.rb
-test/css/test_nthiness.rb
-test/css/test_parser.rb
-test/css/test_tokenizer.rb
-test/css/test_xpath_visitor.rb
-test/decorators/test_slop.rb
-test/ffi/test_document.rb
-test/files/2ch.html
-test/files/address_book.rlx
-test/files/address_book.xml
-test/files/bar/bar.xsd
-test/files/dont_hurt_em_why.xml
-test/files/encoding.html
-test/files/encoding.xhtml
-test/files/exslt.xml
-test/files/exslt.xslt
-test/files/foo/foo.xsd
-test/files/po.xml
-test/files/po.xsd
-test/files/shift_jis.html
-test/files/shift_jis.xml
-test/files/snuggles.xml
-test/files/staff.dtd
-test/files/staff.xml
-test/files/staff.xslt
-test/files/tlm.html
-test/files/valid_bar.xml
-test/helper.rb
-test/html/sax/test_parser.rb
-test/html/sax/test_parser_context.rb
-test/html/test_builder.rb
-test/html/test_document.rb
-test/html/test_document_encoding.rb
-test/html/test_document_fragment.rb
-test/html/test_element_description.rb
-test/html/test_named_characters.rb
-test/html/test_node.rb
-test/html/test_node_encoding.rb
-test/test_convert_xpath.rb
-test/test_css_cache.rb
-test/test_encoding_handler.rb
-test/test_memory_leak.rb
-test/test_nokogiri.rb
-test/test_reader.rb
-test/test_soap4r_sax.rb
-test/test_xslt_transforms.rb
-test/xml/node/test_save_options.rb
-test/xml/node/test_subclass.rb
-test/xml/sax/test_parser.rb
-test/xml/sax/test_parser_context.rb
-test/xml/sax/test_push_parser.rb
-test/xml/test_attr.rb
-test/xml/test_attribute_decl.rb
-test/xml/test_builder.rb
-test/xml/test_cdata.rb
-test/xml/test_comment.rb
-test/xml/test_document.rb
-test/xml/test_document_encoding.rb
-test/xml/test_document_fragment.rb
-test/xml/test_dtd.rb
-test/xml/test_dtd_encoding.rb
-test/xml/test_element_content.rb
-test/xml/test_element_decl.rb
-test/xml/test_entity_decl.rb
-test/xml/test_entity_reference.rb
-test/xml/test_namespace.rb
-test/xml/test_node.rb
-test/xml/test_node_attributes.rb
-test/xml/test_node_encoding.rb
-test/xml/test_node_reparenting.rb
-test/xml/test_node_set.rb
-test/xml/test_parse_options.rb
-test/xml/test_processing_instruction.rb
-test/xml/test_reader_encoding.rb
-test/xml/test_relax_ng.rb
-test/xml/test_schema.rb
-test/xml/test_syntax_error.rb
-test/xml/test_text.rb
-test/xml/test_unparented_node.rb
-test/xml/test_xpath.rb
-test/xslt/test_custom_functions.rb

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/README.ja.rdoc

@@ -1,102 +0,0 @@
-= Nokogiri (鋸)
-
-* http://nokogiri.org/
-* http://github.com/tenderlove/nokogiri/wikis
-* http://github.com/tenderlove/nokogiri/tree/master
-* http://groups.google.com/group/nokogiri-list
-* http://github.com/tenderlove/nokogiri/issues
-
-== DESCRIPTION:
-
-Nokogiri はHTMLとXMLとSAXとXSLTとReaderのパーサーです。とりわけ重要な特徴は、
-ドキュメントをXPathやCSS3セレクター経由で探索する機能を持つことです。
-
-XMLは暴力に似ている - XMLが君の問題を解決しないとしたら、君はXMLを十分に
-使いこなしていない事になる。
-
-== FEATURES:
-
-* XPath による探索
-* CSS3 のセレクターによる探索
-* XML/HTMLのビルダー
-
-XML/HTMLの高速な解析と探索検索、ならびにCSS3セレクタとXPathをサポートしています。
-
-== SUPPORT:
-
-日本語でNokogiriの
-{メーリングリスト}[http://groups.google.com/group/nokogiri-list]
-
-  * http://groups.google.com/group/nokogiri-list
-
-{バグ報告}[http://github.com/tenderlove/nokogiri/issues]
-
-  * http://github.com/tenderlove/nokogiri/issues
-
-IRCのチャンネルはfreenodeの #nokogiri です。
-
-== SYNOPSIS:
-
-  require 'nokogiri'
-  require 'open-uri'
-  
-  doc = Nokogiri::HTML(open('http://www.google.com/search?q=tenderlove'))
-  
-  ####
-  # Search for nodes by css
-  doc.css('h3.r a.l').each do |link|
-    puts link.content
-  end
-  
-  ####
-  # Search for nodes by xpath
-  doc.xpath('//h3/a[@class="l"]').each do |link|
-    puts link.content
-  end
-  
-  ####
-  # Or mix and match.
-  doc.search('h3.r a.l', '//h3/a[@class="l"]').each do |link|
-    puts link.content
-  end
-
-
-== REQUIREMENTS:
-
-* ruby 1.8 or 1.9
-* libxml2
-* libxml2-dev
-* libxslt
-* libxslt-dev
-
-== INSTALL:
-
-* sudo gem install nokogiri
-
-== LICENSE:
-
-(The MIT License)
-
-Copyright (c) 2008 - 2010:
-
-* {Aaron Patterson}[http://tenderlovemaking.com]
-* {Mike Dalessio}[http://mike.daless.io]
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-'Software'), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED 'AS IS', WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
-IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
-CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
-TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
-SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/README.rdoc

@@ -1,146 +0,0 @@
-= Nokogiri
-
-* http://nokogiri.org
-* http://github.com/tenderlove/nokogiri/wikis
-* http://github.com/tenderlove/nokogiri/tree/master
-* http://groups.google.com/group/nokogiri-talk
-* http://github.com/tenderlove/nokogiri/issues
-
-== DESCRIPTION:
-
-Nokogiri (鋸) is an HTML, XML, SAX, and Reader parser.  Among Nokogiri's
-many features is the ability to search documents via XPath or CSS3 selectors.
-
-XML is like violence - if it doesn’t solve your problems, you are not using
-enough of it.
-
-== FEATURES:
-
-* XPath support for document searching
-* CSS3 selector support for document searching
-* XML/HTML builder
-
-Nokogiri parses and searches XML/HTML very quickly, and also has
-correctly implemented CSS3 selector support as well as XPath support.
-
-== SUPPORT:
-
-The Nokogiri {mailing list}[http://groups.google.com/group/nokogiri-talk]
-is available here:
-
-  * http://groups.google.com/group/nokogiri-talk
-
-The {bug tracker}[http://github.com/tenderlove/nokogiri/issues]
-is available here:
-
-  * http://github.com/tenderlove/nokogiri/issues
-
-The IRC channel is #nokogiri on freenode.
-
-== SYNOPSIS:
-
-  require 'nokogiri'
-  require 'open-uri'
-
-  # Get a Nokogiri::HTML:Document for the page we’re interested in...
-
-  doc = Nokogiri::HTML(open('http://www.google.com/search?q=tenderlove'))
-
-  # Do funky things with it using Nokogiri::XML::Node methods...
-
-  ####
-  # Search for nodes by css
-  doc.css('h3.r a.l').each do |link|
-    puts link.content
-  end
-
-  ####
-  # Search for nodes by xpath
-  doc.xpath('//h3/a[@class="l"]').each do |link|
-    puts link.content
-  end
-
-  ####
-  # Or mix and match.
-  doc.search('h3.r a.l', '//h3/a[@class="l"]').each do |link|
-    puts link.content
-  end
-
-
-== REQUIREMENTS:
-
-* ruby 1.8 or 1.9
-* libxml2
-* libxml2-dev
-* libxslt
-* libxslt-dev
-
-== ENCODING:
-
-Strings are always stored as UTF-8 internally.  Methods that return
-text values will always return UTF-8 encoded strings.  Methods that
-return XML (like to_xml, to_html and inner_html) will return a string
-encoded like the source document.
-
-*WARNING*
-
-Some documents declare one particular encoding, but use a different
-one. So, which encoding should the parser choose?
-
-Remember that data is just a stream of bytes. Only us humans add
-meaning to that stream. Any particular set of bytes could be valid
-characters in multiple encodings, so detecting encoding with 100%
-accuracy is not possible. libxml2 does its best, but it can't be right
-100% of the time.
-
-If you want Nokogiri to handle the document encoding properly, your
-best bet is to explicitly set the encoding.  Here is an example of
-explicitly setting the encoding to EUC-JP on the parser:
-
-    doc = Nokogiri.XML('<foo><bar /><foo>', nil, 'EUC-JP')
-
-== INSTALL:
-
-* sudo gem install nokogiri
-
-=== Binary packages
-
-Binary packages are available for:
-
-* SuSE[http://download.opensuse.org/repositories/devel:/languages:/ruby:/extensions/]
-* Fedora[http://s390.koji.fedoraproject.org/koji/packageinfo?packageID=6756]
-
-== DEVELOPMENT:
-
-Developing Nokogiri requires racc and rexical.
-
-* rake install:deps
-* rake test
-
-== LICENSE:
-
-(The MIT License)
-
-Copyright (c) 2008 - 2010:
-
-* {Aaron Patterson}[http://tenderlovemaking.com]
-* {Mike Dalessio}[http://mike.daless.io]
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-'Software'), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED 'AS IS', WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
-IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
-CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
-TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
-SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.