search_biomodel 1.0.0 → 1.0.1

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.gitignore

@@ -1,7 +0,0 @@
-.DS_Store
-doc
-coverage
-*~
-*.gem
-.bundle
-Gemfile.lock

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.rspec

@@ -1 +0,0 @@
---colour

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/.travis.yml

@@ -1,8 +0,0 @@
-script: "rake"
-rvm:
-  - 1.8.7
-  - 1.9.2
-  - ree
-  - rbx
-  - jruby
-  - ruby-head

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/CHANGELOG.md

@@ -1,90 +0,0 @@
-== 1.0.1 (2011-06-21)
-
-* Fix: Make sure to always load both StringWithAttributes and StringIOFile
-  to prevent NameError's.
-
-== 1.0.0 (2011-06-20)
-
-* Notice: As of v1.0.0, Nori will follow [Semantic Versioning](http://semver.org).
-
-* Feature: Added somewhat advanced typecasting:
-
-  What this means:
-
-  * "true" and "false" are converted to TrueClass and FalseClass
-  * Strings matching an xs:time, xs:date and xs:dateTime are converted
-    to Time, Date and DateTime objects.
-
-  You can disable this feature via:
-
-      Nori.advanced_typecasting = false
-
-* Feature: Added an option to strip the namespaces from every tag.
-  This feature might raise problems and is therefore disabled by default.
-
-      Nori.strip_namespaces = true
-
-* Feature: Added an option to specify a custom formula to convert tags.
-  Here's an example:
-
-      Nori.configure do |config|
-        config.convert_tags_to { |tag| tag.snake_case.to_sym }
-      end
-
-      xml = '<userResponse><accountStatus>active</accountStatus></userResponse>'
-      parse(xml).should == { :user_response => { :account_status => "active" }
-
-== 0.2.2 (2011-05-16)
-
-* Fix: namespaced xs:nil values should be nil objects.
-
-== 0.2.1 (2011-05-15)
-
-* Fix: Changed XML attributes converted to Hash keys to be prefixed with an @-sign.  
-  This avoids problems with attributes and child nodes having the same name.
-
-      <multiRef id="id1">
-        <approved xsi:type="xsd:boolean">true</approved>
-        <id xsi:type="xsd:long">76737</id>
-      </multiRef>
-
-  is now translated to:
-
-      { "multiRef" => { "@id" => "id1", "id" => "76737", "approved" => "true" } }
-
-== 0.2.0 (2011-04-30)
-
-* Removed JSON from the original Crack basis
-* Fixed a problem with Object#blank?
-* Added swappable parsers
-* Added a Nokogiri parser with you can switch to via:
-
-      Nori.parser = :nokogiri
-
-== 0.1.7 2010-02-19
-* 1 minor patch
-  * Added patch from @purp for ISO 8601 date/time format
-
-== 0.1.6 2010-01-31
-* 1 minor patch
-  * Added Crack::VERSION constant - http://weblog.rubyonrails.org/2009/9/1/gem-packaging-best-practices
-
-== 0.1.5 2010-01-27
-* 1 minor patch
-  * Strings that begin with dates shouldn't be parsed as such (sandro)
-
-== 0.1.3 2009-06-22
-* 1 minor patch
-  * Parsing a text node with attributes stores them in the attributes method (tamalw)
-
-== 0.1.2 2009-04-21
-* 2 minor patches
-  * Correct unnormalization of attribute values (der-flo)
-  * Fix error in parsing YAML in the case where a hash value ends with backslashes, and there are subsequent values in the hash (deadprogrammer)
-
-== 0.1.1 2009-03-31
-* 1 minor patch
-  * Parsing empty or blank xml now returns empty hash instead of raising error.
-
-== 0.1.0 2009-03-28
-* Initial release.

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/Gemfile

@@ -1,4 +0,0 @@
-source :rubygems
-
-# Specify your gem's dependencies in nori.gemspec
-gemspec

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/LICENSE

@@ -1,20 +0,0 @@
-Copyright (c) 2011 Daniel Harrington
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/README.md

@@ -1,64 +0,0 @@
-Nori [![Build Status](http://travis-ci.org/rubiii/nori.png)](http://travis-ci.org/rubiii/nori)
-====
-
-Really simple XML parsing ripped from Crack which ripped it from Merb.  
-Nori was created to bypass the stale development of Crack, improve its XML parser  
-and fix certain issues.
-
-``` ruby
-Nori.parse("<tag>This is the contents</tag>")
-# => { 'tag' => 'This is the contents' }
-```
-
-Nori supports pluggable parsers and ships with both REXML and Nokogiri implementations.  
-It defaults to REXML, but you can change it to use Nokogiri via:
-
-``` ruby
-Nori.parser = :nokogiri
-```
-
-Make sure Nokogiri is in your LOAD_PATH when parsing XML, because Nori tries to load it  
-when it's needed.
-
-
-Typecasting
------------
-
-Besides regular typecasting, Nori features somewhat "advanced" typecasting:
-
-* "true" and "false" String values are converted to `TrueClass` and `FalseClass`.
-* String values matching xs:time, xs:date and xs:dateTime are converted
-  to `Time`, `Date` and `DateTime` objects.
-
-You can disable this feature via:
-
-``` ruby
-Nori.advanced_typecasting = false
-```
-
-
-Namespaces
-----------
-
-Nori can strip the namespaces from your XML tags. This feature might raise  
-problems and is therefore disabled by default. Enable it via:
-
-``` ruby
-Nori.strip_namespaces = true
-```
-
-
-XML tags -> Hash keys
----------------------
-
-Nori lets you specify a custom formula to convert XML tags to Hash keys.  
-Let me give you an example:
-
-``` ruby
-Nori.configure do |config|
-  config.convert_tags_to { |tag| tag.snake_case.to_sym }
-end
-
-xml = '<userResponse><accountStatus>active</accountStatus></userResponse>'
-Nori.parse(xml)  # => { :user_response => { :account_status => "active" }
-```

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/Rakefile

@@ -1,16 +0,0 @@
-require "bundler"
-Bundler::GemHelper.install_tasks
-
-require "rspec/core/rake_task"
-
-desc "Benchmark Nori parsers"
-task :benchmark do
-  require "benchmark/benchmark"
-end
-
-RSpec::Core::RakeTask.new do |t|
-  t.rspec_opts = %w(-c)
-end
-
-task :default => :spec
-task :test => :spec

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/benchmark/benchmark.rb

@@ -1,19 +0,0 @@
-$:.push File.expand_path("../../lib", __FILE__)
-require "nori"
-
-require "benchmark"
-
-Benchmark.bm 30 do |x|
-
-  num = 250
-  xml = File.read File.expand_path("../soap_response.xml", __FILE__)
-
-  x.report "rexml parser" do
-    num.times { Nori.parse xml, :rexml }
-  end
-
-  x.report "nokogiri parser" do
-    num.times { Nori.parse xml, :nokogiri }
-  end
-
-end

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/benchmark/soap_response.xml

@@ -1,266 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<soap:Envelope xmlns:soap="http://schemas.xmlsoap.org/soap/envelope/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema">
-  <soap:Body>
-    <GetICB_9_2_4_DestInfoWithDestIdResponse xmlns="http://airline.com/">
-      <GetICB_9_2_4_DestInfoWithDestIdResult>
-        <xs:schema id="NewDataSet" xmlns="" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:msdata="urn:schemas-microsoft-com:xml-msdata">
-          <xs:element name="NewDataSet" msdata:IsDataSet="true" msdata:MainDataTable="CL_9_2_4_DestInfo" msdata:UseCurrentLocale="true">
-            <xs:complexType>
-              <xs:choice minOccurs="0" maxOccurs="unbounded">
-                <xs:element name="CL_9_2_4_DestInfo">
-                  <xs:complexType>
-                    <xs:sequence>
-                      <xs:element name="DESTINATION" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="64" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="COUNTRY" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="50" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="AIRPORTNAME" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="70" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="DISTANCE_APT_CTY" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="50" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="TRANSPORT_APT_CTY" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="50" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="REVCABIN" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="50" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="REVCOCKPIT" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="50" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="GROUPTEXT" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="50" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="SORT" type="xs:decimal" minOccurs="0" />
-                      <xs:element name="HEADING" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="30" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="VISIBLE" type="xs:decimal" minOccurs="0" />
-                      <xs:element name="SORT1" type="xs:decimal" minOccurs="0" />
-                      <xs:element name="ITEMSORT" type="xs:decimal" minOccurs="0" />
-                      <xs:element name="AUSWAHLTEXT" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="255" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                      <xs:element name="REVDATE" type="xs:dateTime" minOccurs="0" />
-                      <xs:element name="CABIN" type="xs:decimal" minOccurs="0" />
-                      <xs:element name="COCKPIT" type="xs:decimal" minOccurs="0" />
-                      <xs:element name="APIATA" minOccurs="0">
-                        <xs:simpleType>
-                          <xs:restriction base="xs:string">
-                            <xs:maxLength value="3" />
-                          </xs:restriction>
-                        </xs:simpleType>
-                      </xs:element>
-                    </xs:sequence>
-                  </xs:complexType>
-                </xs:element>
-              </xs:choice>
-            </xs:complexType>
-          </xs:element>
-        </xs:schema>
-        <diffgr:diffgram xmlns:msdata="urn:schemas-microsoft-com:xml-msdata" xmlns:diffgr="urn:schemas-microsoft-com:xml-diffgram-v1">
-          <DocumentElement xmlns="">
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo1" msdata:rowOrder="0">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>Passengers</GROUPTEXT>
-              <SORT>1</SORT>
-              <HEADING>Disembarking:</HEADING>
-              <VISIBLE>-1</VISIBLE>
-              <SORT1>2</SORT1>
-              <ITEMSORT>0</ITEMSORT>
-              <AUSWAHLTEXT>Baby buggies are delivered at aircraft door or stairs.</AUSWAHLTEXT>
-              <REVDATE>2008-09-01T00:00:00+02:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>0</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo2" msdata:rowOrder="1">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>Aircraft</GROUPTEXT>
-              <SORT>2</SORT>
-              <HEADING>Turnaround:</HEADING>
-              <VISIBLE>-1</VISIBLE>
-              <SORT1>5.30</SORT1>
-              <ITEMSORT>0</ITEMSORT>
-              <AUSWAHLTEXT>Station applies EST process.</AUSWAHLTEXT>
-              <REVDATE>2009-05-05T00:00:00+02:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>-1</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo3" msdata:rowOrder="2">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>General</GROUPTEXT>
-              <SORT>4</SORT>
-              <HEADING>Addresses:</HEADING>
-              <VISIBLE>-1</VISIBLE>
-              <SORT1>8.50</SORT1>
-              <ITEMSORT>1</ITEMSORT>
-              <AUSWAHLTEXT>
-                Station Manager:
-                YYYYYYYY XXXXXXX
-                PMIKXXX
-                Tel.:+34 971 xxx xxx
-                Mobile:+ 34 600 46 xx xx
-              </AUSWAHLTEXT>
-              <REVDATE>2010-02-08T00:00:00+01:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>-1</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo4" msdata:rowOrder="3">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>General</GROUPTEXT>
-              <SORT>4</SORT>
-              <HEADING>Addresses:</HEADING>
-              <VISIBLE>-1</VISIBLE>
-              <SORT1>8.50</SORT1>
-              <ITEMSORT>2</ITEMSORT>
-              <AUSWAHLTEXT>
-                Handling Agent:
-                xxxxxxx Airport Services
-                Operations
-                PMIIxxx
-                Tel   +34 971 xxx xxx
-                Passenger Services
-                PMIPXXX
-                Tel : +34 971 xxx xxx
-              </AUSWAHLTEXT>
-              <REVDATE>2010-02-08T00:00:00+01:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>-1</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo5" msdata:rowOrder="4">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>General</GROUPTEXT>
-              <SORT>4</SORT>
-              <HEADING>Announcements:</HEADING>
-              <VISIBLE>-1</VISIBLE>
-              <SORT1>11</SORT1>
-              <ITEMSORT>1</ITEMSORT>
-              <AUSWAHLTEXT>Prerecorded Spanish announcements available.</AUSWAHLTEXT>
-              <REVDATE>2009-12-30T00:00:00+01:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>0</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo6" msdata:rowOrder="5">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>General</GROUPTEXT>
-              <SORT>4</SORT>
-              <HEADING>Life jackets / DEMO:</HEADING>
-              <VISIBLE>-1</VISIBLE>
-              <SORT1>12</SORT1>
-              <ITEMSORT>0</ITEMSORT>
-              <AUSWAHLTEXT>
-                Infant life jackets to be distributed.
-                DEMO with life jackets.
-              </AUSWAHLTEXT>
-              <REVDATE>2002-07-24T00:00:00+02:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>0</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-            <CL_9_2_4_DestInfo diffgr:id="CL_9_2_4_DestInfo7" msdata:rowOrder="6">
-              <DESTINATION>PALMA DE MALLORCA</DESTINATION>
-              <COUNTRY>Spain Schengen</COUNTRY>
-              <AIRPORTNAME>Son San Juan</AIRPORTNAME>
-              <DISTANCE_APT_CTY>11 km</DISTANCE_APT_CTY>
-              <REVCABIN>08.02.10</REVCABIN>
-              <REVCOCKPIT>08.02.10</REVCOCKPIT>
-              <GROUPTEXT>Catering</GROUPTEXT>
-              <SORT>5</SORT>
-              <HEADING>General:</HEADING>
-              <VISIBLE>0</VISIBLE>
-              <SORT1>1</SORT1>
-              <ITEMSORT>1</ITEMSORT>
-              <AUSWAHLTEXT>
-                LSG XXX XXXX
-                Tel.: +34 971 xxx xxx or xxx xxx
-                Sita: PMIAXXX
-              </AUSWAHLTEXT>
-              <REVDATE>2005-06-01T00:00:00+02:00</REVDATE>
-              <CABIN>-1</CABIN>
-              <COCKPIT>0</COCKPIT>
-              <APIATA>PMI</APIATA>
-            </CL_9_2_4_DestInfo>
-          </DocumentElement>
-        </diffgr:diffgram>
-      </GetICB_9_2_4_DestInfoWithDestIdResult>
-    </GetICB_9_2_4_DestInfoWithDestIdResponse>
-  </soap:Body>
-</soap:Envelope>

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/hash.rb

@@ -1,70 +0,0 @@
-require "uri"
-
-module Nori
-  module CoreExt
-    module Hash
-
-      # @return <String> This hash as a query string
-      #
-      # @example
-      #   { :name => "Bob",
-      #     :address => {
-      #       :street => '111 Ruby Ave.',
-      #       :city => 'Ruby Central',
-      #       :phones => ['111-111-1111', '222-222-2222']
-      #     }
-      #   }.to_params
-      #     #=> "name=Bob&address[city]=Ruby Central&address[phones][]=111-111-1111&address[phones][]=222-222-2222&address[street]=111 Ruby Ave."
-      def to_params
-        params = self.map { |k, v| normalize_param(k,v) }.join
-        params.chop! # trailing &
-        params
-      end
-
-      # @param key<Object> The key for the param.
-      # @param value<Object> The value for the param.
-      #
-      # @return <String> This key value pair as a param
-      #
-      # @example normalize_param(:name, "Bob Jones") #=> "name=Bob%20Jones&"
-      def normalize_param(key, value)
-        param = ''
-        stack = []
-
-        if value.is_a?(Array)
-          param << value.map { |element| normalize_param("#{key}[]", element) }.join
-        elsif value.is_a?(Hash)
-          stack << [key,value]
-        else
-          param << "#{key}=#{URI.encode(value.to_s, Regexp.new("[^#{URI::PATTERN::UNRESERVED}]"))}&"
-        end
-
-        stack.each do |parent, hash|
-          hash.each do |key, value|
-            if value.is_a?(Hash)
-              stack << ["#{parent}[#{key}]", value]
-            else
-              param << normalize_param("#{parent}[#{key}]", value)
-            end
-          end
-        end
-
-        param
-      end
-
-      # @return <String> The hash as attributes for an XML tag.
-      #
-      # @example
-      #   { :one => 1, "two"=>"TWO" }.to_xml_attributes
-      #     #=> 'one="1" two="TWO"'
-      def to_xml_attributes
-        map do |k, v|
-          %{#{k.to_s.snakecase.sub(/^(.{1,1})/) { |m| m.downcase }}="#{v}"}
-        end.join(' ')
-      end
-
-    end
-  end
-end
-
-Hash.send :include, Nori::CoreExt::Hash

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/object.rb

@@ -1,13 +0,0 @@
-module Nori
-  module CoreExt
-    module Object
-
-      def blank?
-        respond_to?(:empty?) ? empty? : !self
-      end unless method_defined?(:blank?)
-
-    end
-  end
-end
-
-Object.send :include, Nori::CoreExt::Object

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext/string.rb

@@ -1,21 +0,0 @@
-module Nori
-  module CoreExt
-    module String
-
-      # Returns the String in snake_case.
-      def snakecase
-        str = dup
-        str.gsub! /::/, '/'
-        str.gsub! /([A-Z]+)([A-Z][a-z])/, '\1_\2'
-        str.gsub! /([a-z\d])([A-Z])/, '\1_\2'
-        str.tr! ".", "_"
-        str.tr! "-", "_"
-        str.downcase!
-        str
-      end unless method_defined?(:snakecase)
-
-    end
-  end
-end
-
-String.send :include, Nori::CoreExt::String

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/core_ext.rb

@@ -1,3 +0,0 @@
-require "nori/core_ext/object"
-require "nori/core_ext/string"
-require "nori/core_ext/hash"

data/search_biomodel/ruby/1.8/gems/nori-1.0.1/lib/nori/parser/nokogiri.rb

@@ -1,45 +0,0 @@
-require "nokogiri"
-
-module Nori
-  module Parser
-
-    # = Nori::Parser::Nokogiri
-    #
-    # Nokogiri SAX parser.
-    module Nokogiri
-
-      class Document < ::Nokogiri::XML::SAX::Document
-
-        def stack
-          @stack ||= []
-        end
-
-        def start_element(name, attrs = [])
-          stack.push Nori::XMLUtilityNode.new(name, Hash[*attrs.flatten])
-        end
-
-        def end_element(name)
-          if stack.size > 1
-            last = stack.pop
-            stack.last.add_node last
-          end
-        end
-
-        def characters(string)
-          stack.last.add_node(string) unless string.strip.length == 0 || stack.empty?
-        end
-
-        alias cdata_block characters
-
-      end
-
-      def self.parse(xml)
-        document = Document.new
-        parser = ::Nokogiri::XML::SAX::Parser.new document
-        parser.parse xml
-        document.stack.length > 0 ? document.stack.pop.to_hash : {}
-      end
-
-    end
-  end
-end