search_biomodel 1.0.0 → 1.0.1

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Files changed (1054) hide show
  1. data/VERSION +1 -1
  2. data/search_biomodel.gemspec +1 -1051
  3. data/test/test_search_biomodel.rb +3 -4
  4. metadata +3 -1053
  5. data/search_biomodel/ruby/1.8/bin/jeweler +0 -19
  6. data/search_biomodel/ruby/1.8/bin/nokogiri +0 -19
  7. data/search_biomodel/ruby/1.8/bin/rackup +0 -19
  8. data/search_biomodel/ruby/1.8/bin/rake +0 -19
  9. data/search_biomodel/ruby/1.8/bin/rcov +0 -19
  10. data/search_biomodel/ruby/1.8/cache/builder-3.0.0.gem +0 -0
  11. data/search_biomodel/ruby/1.8/cache/git-1.2.5.gem +0 -0
  12. data/search_biomodel/ruby/1.8/cache/gyoku-0.4.4.gem +0 -0
  13. data/search_biomodel/ruby/1.8/cache/httpi-0.9.4.gem +0 -0
  14. data/search_biomodel/ruby/1.8/cache/jeweler-1.6.2.gem +0 -0
  15. data/search_biomodel/ruby/1.8/cache/nokogiri-1.4.6.gem +0 -0
  16. data/search_biomodel/ruby/1.8/cache/nori-1.0.1.gem +0 -0
  17. data/search_biomodel/ruby/1.8/cache/pyu-ntlm-http-0.1.3.1.gem +0 -0
  18. data/search_biomodel/ruby/1.8/cache/rack-1.3.0.gem +0 -0
  19. data/search_biomodel/ruby/1.8/cache/rake-0.9.2.gem +0 -0
  20. data/search_biomodel/ruby/1.8/cache/rcov-0.9.9.gem +0 -0
  21. data/search_biomodel/ruby/1.8/cache/savon-0.9.2.gem +0 -0
  22. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/CHANGES +0 -89
  23. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README +0 -229
  24. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/README.rdoc +0 -232
  25. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/Rakefile +0 -296
  26. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/TAGS +0 -55364
  27. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/blankslate.rb +0 -109
  28. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/blankslate.rb +0 -23
  29. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xchar.rb +0 -197
  30. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlbase.rb +0 -160
  31. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlevents.rb +0 -63
  32. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder/xmlmarkup.rb +0 -334
  33. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/lib/builder.rb +0 -13
  34. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/performance.rb +0 -40
  35. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/preload.rb +0 -39
  36. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_blankslate.rb +0 -225
  37. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_cssbuilder.rb +0 -125
  38. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_eventbuilder.rb +0 -150
  39. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_markupbuilder.rb +0 -546
  40. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_namecollision.rb +0 -39
  41. data/search_biomodel/ruby/1.8/gems/builder-3.0.0/test/test_xchar.rb +0 -77
  42. data/search_biomodel/ruby/1.8/gems/git-1.2.5/README +0 -240
  43. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/author.rb +0 -14
  44. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/base.rb +0 -479
  45. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branch.rb +0 -104
  46. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/branches.rb +0 -48
  47. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/diff.rb +0 -146
  48. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/index.rb +0 -5
  49. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/lib.rb +0 -719
  50. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/log.rb +0 -117
  51. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/object.rb +0 -273
  52. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/path.rb +0 -27
  53. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/remote.rb +0 -40
  54. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/repository.rb +0 -4
  55. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stash.rb +0 -27
  56. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/stashes.rb +0 -44
  57. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/status.rb +0 -110
  58. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git/working_directory.rb +0 -4
  59. data/search_biomodel/ruby/1.8/gems/git-1.2.5/lib/git.rb +0 -156
  60. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gemtest +0 -0
  61. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.gitignore +0 -9
  62. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.rspec +0 -1
  63. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/.travis.yml +0 -7
  64. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/CHANGELOG.md +0 -55
  65. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Gemfile +0 -2
  66. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/LICENSE +0 -20
  67. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/README.md +0 -81
  68. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/Rakefile +0 -11
  69. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/gyoku.gemspec +0 -26
  70. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/array.rb +0 -45
  71. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/core_ext/string.rb +0 -19
  72. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/hash.rb +0 -55
  73. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/version.rb +0 -5
  74. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_key.rb +0 -63
  75. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku/xml_value.rb +0 -28
  76. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/lib/gyoku.rb +0 -23
  77. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/array_spec.rb +0 -53
  78. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/core_ext/string_spec.rb +0 -17
  79. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/hash_spec.rb +0 -160
  80. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_key_spec.rb +0 -77
  81. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku/xml_value_spec.rb +0 -49
  82. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/gyoku_spec.rb +0 -46
  83. data/search_biomodel/ruby/1.8/gems/gyoku-0.4.4/spec/spec_helper.rb +0 -2
  84. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.autotest +0 -5
  85. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gemtest +0 -0
  86. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.gitignore +0 -9
  87. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.rspec +0 -1
  88. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/.travis.yml +0 -7
  89. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/CHANGELOG.md +0 -60
  90. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Gemfile +0 -8
  91. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/LICENSE +0 -20
  92. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/README.md +0 -223
  93. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/Rakefile +0 -18
  94. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/autotest/discover.rb +0 -1
  95. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/httpi.gemspec +0 -28
  96. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/curb.rb +0 -125
  97. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/httpclient.rb +0 -98
  98. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter/net_http.rb +0 -117
  99. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/adapter.rb +0 -67
  100. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/config.rb +0 -81
  101. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/auth/ssl.rb +0 -91
  102. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/dime.rb +0 -56
  103. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/request.rb +0 -90
  104. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/response.rb +0 -85
  105. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi/version.rb +0 -5
  106. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/lib/httpi.rb +0 -198
  107. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/attachment.gif +0 -0
  108. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_cert.pem +0 -16
  109. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/client_key.pem +0 -15
  110. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.gz +0 -0
  111. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml.xml +0 -10
  112. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.dime +0 -0
  113. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/fixtures/xml_dime.xml +0 -1
  114. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/curb_spec.rb +0 -232
  115. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/httpclient_spec.rb +0 -164
  116. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter/net_http_spec.rb +0 -142
  117. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/adapter_spec.rb +0 -55
  118. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/config_spec.rb +0 -117
  119. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/auth/ssl_spec.rb +0 -128
  120. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/httpi_spec.rb +0 -284
  121. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/request_spec.rb +0 -135
  122. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/httpi/response_spec.rb +0 -125
  123. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/request_spec.rb +0 -95
  124. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/integration/server.rb +0 -39
  125. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/spec_helper.rb +0 -12
  126. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/fixture.rb +0 -27
  127. data/search_biomodel/ruby/1.8/gems/httpi-0.9.4/spec/support/matchers.rb +0 -19
  128. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/.document +0 -8
  129. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/ChangeLog.markdown +0 -166
  130. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile +0 -22
  131. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Gemfile.lock +0 -59
  132. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/LICENSE.txt +0 -20
  133. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/README.markdown +0 -216
  134. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/Rakefile +0 -81
  135. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/bin/jeweler +0 -5
  136. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/cucumber.feature +0 -103
  137. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/directory_layout.feature +0 -86
  138. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/dotdocument.feature +0 -13
  139. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/env_options.feature +0 -9
  140. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/gemfile.feature +0 -71
  141. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/git.feature +0 -102
  142. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/license.feature +0 -20
  143. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/rakefile.feature +0 -158
  144. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/readme.feature +0 -12
  145. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test.feature +0 -54
  146. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/generator/test_helper.feature +0 -149
  147. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/placeholder.feature +0 -5
  148. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/debug_steps.rb +0 -6
  149. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/filesystem_steps.rb +0 -70
  150. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/generator_steps.rb +0 -382
  151. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/step_definitions/task_steps.rb +0 -6
  152. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/support/env.rb +0 -42
  153. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/build_gem.feature +0 -9
  154. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version.feature +0 -31
  155. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/features/tasks/version_bumping.feature +0 -49
  156. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/jeweler.gemspec +0 -244
  157. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/build_gem.rb +0 -36
  158. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/check_dependencies.rb +0 -50
  159. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/install_gem.rb +0 -31
  160. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_gemspec.rb +0 -82
  161. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_git.rb +0 -59
  162. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/release_to_rubygems.rb +0 -28
  163. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/validate_gemspec.rb +0 -30
  164. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/base.rb +0 -55
  165. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_major.rb +0 -13
  166. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_minor.rb +0 -12
  167. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/bump_patch.rb +0 -14
  168. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/version/write.rb +0 -12
  169. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands/write_gemspec.rb +0 -39
  170. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/commands.rb +0 -20
  171. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/errors.rb +0 -8
  172. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemcutter_tasks.rb +0 -8
  173. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/gemspec_helper.rb +0 -87
  174. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/application.rb +0 -61
  175. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/bacon_mixin.rb +0 -43
  176. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/github_mixin.rb +0 -29
  177. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/micronaut_mixin.rb +0 -41
  178. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/minitest_mixin.rb +0 -42
  179. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/options.rb +0 -162
  180. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rdoc_mixin.rb +0 -9
  181. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/riot_mixin.rb +0 -42
  182. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/rspec_mixin.rb +0 -42
  183. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shindo_mixin.rb +0 -44
  184. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/shoulda_mixin.rb +0 -42
  185. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testspec_mixin.rb +0 -42
  186. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/testunit_mixin.rb +0 -39
  187. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator/yard_mixin.rb +0 -14
  188. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/generator.rb +0 -287
  189. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubyforge_tasks.rb +0 -95
  190. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_dot_org_tasks.rb +0 -38
  191. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/rubygems_tasks.rb +0 -38
  192. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/specification.rb +0 -110
  193. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/tasks.rb +0 -224
  194. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.document +0 -5
  195. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/.gitignore +0 -48
  196. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Gemfile +0 -12
  197. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/LICENSE.txt +0 -20
  198. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/README.rdoc +0 -19
  199. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/Rakefile +0 -9
  200. data/search_biomodel/ruby/1.8/gems/jeweler-1.6.2/lib/jeweler/templates/bacon/flunking.rb +0 -7
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  372. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_relax_ng.c +0 -168
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  379. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/ext/nokogiri/xml_sax_parser_context.h +0 -10
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  405. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css/tokenizer.rex +0 -55
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  407. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/css.rb +0 -28
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  410. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/document.rb +0 -28
  411. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/element_description.rb +0 -81
  412. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/entity_lookup.rb +0 -16
  413. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/html/sax/parser_context.rb +0 -38
  414. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/io_callbacks.rb +0 -42
  415. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/libxml.rb +0 -420
  416. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/common_node.rb +0 -38
  417. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_elem_desc.rb +0 -24
  418. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_entity_desc.rb +0 -13
  419. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_alloc.rb +0 -16
  420. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attr.rb +0 -20
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  424. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_document.rb +0 -117
  425. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_dtd.rb +0 -28
  426. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element.rb +0 -26
  427. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_element_content.rb +0 -17
  428. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_entity.rb +0 -32
  429. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_enumeration.rb +0 -12
  430. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node.rb +0 -28
  431. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_node_set.rb +0 -53
  432. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_notation.rb +0 -11
  433. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_ns.rb +0 -15
  434. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_context.rb +0 -20
  435. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_parser_input.rb +0 -19
  436. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_relax_ng.rb +0 -14
  437. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_handler.rb +0 -51
  438. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_sax_push_parser_context.rb +0 -124
  439. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_schema.rb +0 -13
  440. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_syntax_error.rb +0 -31
  441. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_text_reader.rb +0 -12
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  443. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_object.rb +0 -35
  444. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_xpath_parser_context.rb +0 -20
  445. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xslt_stylesheet.rb +0 -13
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  447. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attr.rb +0 -41
  448. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/attribute_decl.rb +0 -27
  449. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/cdata.rb +0 -19
  450. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/comment.rb +0 -18
  451. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/document.rb +0 -174
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  454. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_content.rb +0 -43
  455. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/element_decl.rb +0 -19
  456. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_decl.rb +0 -36
  457. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/entity_reference.rb +0 -19
  458. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/namespace.rb +0 -44
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  462. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/reader.rb +0 -236
  463. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/relax_ng.rb +0 -85
  464. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser.rb +0 -143
  465. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/sax/parser_context.rb +0 -79
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  469. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/text.rb +0 -18
  470. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath.rb +0 -9
  471. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xml/xpath_context.rb +0 -153
  472. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/xslt/stylesheet.rb +0 -77
  473. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/builder.rb +0 -35
  474. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document.rb +0 -209
  475. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/document_fragment.rb +0 -41
  476. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/element_description.rb +0 -23
  477. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/entity_lookup.rb +0 -13
  478. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser.rb +0 -52
  479. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html/sax/parser_context.rb +0 -16
  480. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/html.rb +0 -35
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  482. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/syntax_error.rb +0 -4
  483. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version.rb +0 -43
  484. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/version_warning.rb +0 -14
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  486. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/attribute_decl.rb +0 -18
  487. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/builder.rb +0 -418
  488. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/cdata.rb +0 -11
  489. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/character_data.rb +0 -7
  490. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document.rb +0 -218
  491. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/document_fragment.rb +0 -84
  492. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/dtd.rb +0 -22
  493. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_content.rb +0 -36
  494. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/element_decl.rb +0 -13
  495. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/entity_decl.rb +0 -19
  496. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/namespace.rb +0 -13
  497. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node/save_options.rb +0 -52
  498. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node.rb +0 -891
  499. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/node_set.rb +0 -350
  500. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/notation.rb +0 -6
  501. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/parse_options.rb +0 -93
  502. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/character_data.rb +0 -18
  503. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp/node.rb +0 -56
  504. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/pp.rb +0 -2
  505. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/processing_instruction.rb +0 -8
  506. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/reader.rb +0 -112
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  508. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/document.rb +0 -164
  509. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser.rb +0 -115
  510. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/parser_context.rb +0 -16
  511. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax/push_parser.rb +0 -60
  512. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/sax.rb +0 -4
  513. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/schema.rb +0 -63
  514. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/syntax_error.rb +0 -47
  515. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/text.rb +0 -9
  516. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath/syntax_error.rb +0 -11
  517. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath.rb +0 -10
  518. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xml/xpath_context.rb +0 -16
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  520. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/xslt/stylesheet.rb +0 -25
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  522. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri.rb +0 -133
  523. data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/xsd/xmlparser/nokogiri.rb +0 -90
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data/VERSION CHANGED
@@ -1 +1 @@
1
- 1.0.0
1
+ 1.0.1