RubyGems - search_biomodel - Versions diffs - 1.0.0 → 1.0.1 - Mend

search_biomodel 1.0.0 → 1.0.1

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data/search_biomodel/ruby/1.8/gems/rake-0.9.2/CHANGES DELETED Viewed

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-= Rake Changelog
-== Version 0.9.1
-* Added deprecation warnings to the Rake DSL methods.
-== Version 0.9.0
-* *Incompatible* *change*: Rake DSL commands ('task', 'file', etc.)  are
-  no longer private methods in Object.  If you need to call 'task :xzy' inside
-  your class, include Rake::DSL into the class.  The DSL is still available at
-  the top level scope (via the top level object which extends Rake::DSL).
-* Rake now warns when the deprecated :needs syntax used.
-* Rake history is now UTF-8 encoded.
-* Rake now uses case-insensitive comparisons to find the Rakefile on Windows.
-  Based on patch by Roger Pack.
-* Rake now requires (instead of loads) files in the test task.  Patch by Cezary
-  Baginski.
-* Fixed typos.  Patches by Sean Scot August Moon and R.T. Lechow.
-* Rake now prints the Rakefile directory only when it's different from the
-  current directory.  Patch by Alex Chaffee.
-* Improved rakefile_location discovery on Windows.  Patch by James Tucker.
-* Rake now recognizes "Windows Server" as a windows system.  Patch by Matthias
-  Lüdtke
-* Rake::RDocTask is deprecated.  Use RDoc::Task from RDoc 2.4.2+ (require
-  'rdoc/task')
-* Rake::GemPackageTask is deprecated.  Use Gem::PackageTask (require
-  'rubygems/package_task')
-* Rake now outputs various messages to $stderr instead of $stdout.
-* Rake no longer emits warnings for Config.  Patch by Santiago Pastorino.
-* Split rake.rb into individual files.
-* Support for the --where (-W) flag for showing where a task is defined.
-* Fixed quoting in test task.
-  (http://onestepback.org/redmine/issues/show/44,
-  http://www.pivotaltracker.com/story/show/1223138)
-* Fixed the silent option parsing problem.
-  (http://onestepback.org/redmine/issues/show/47)
-* Fixed :verbose=>false flag on sh and ruby commands.
-* Rake command line options may be given by default in a RAKEOPT
-  environment variable.
-* Errors in Rake will now display the task invocation chain in effect
-  at the time of the error.
-* Accepted change by warnickr to not expand test patterns in shell
-  (allowing more files in the test suite).
-* Fixed that file tasks did not perform prereq lookups in scope
-  (Redmine #57).
-== Version 0.8.7
-* Fixed EXEEXT for JRuby on windows.
-== Version 0.8.6
-* Minor fixes to the RDoc generation (removed dependency on darkfish
-  and removed inline source option).
-== PreVersion 0.8.6
-* Now allow # comments to comment a task definition.
-== Version 0.8.5
-* Better support for the system command on Windows.
-== Version 0.8.4
-* Preserve case when locating rakefiles (patch from James
-  M. Lawrence/quix)
-* Better support for windows paths in the test task (patch from Simon
-  Chiang/bahuvrihi)
-* Windows system dir search order is now: HOME, HOMEDRIVE + HOMEPATH,
-  APPDATA, USERPROFILE (patch from Luis Lavena)
-* MingGW is now recognized as a windows platform.  (patch from Luis
-  Lavena)
-* Numerous fixes to the windows test suite (patch from Luis Lavena).
-* Improved Rakefile case insensitivity testing (patch from Luis
-  Lavena).
-* Fixed stray ARGV option problem that was interfering with
-  Test::Unit::Runner.
-* Fixed default verbose mode (was accidently changed to false).
-* Removed reference to manage_gem to fix the warning produced by the
-  gem package task.
-== Version 0.8.3
-* Enhanced the system directory detection in windows. We now check
-  HOMEDRIVE/HOMEPATH and USERPROFILE if APPDATA isn't found. (Patch
-  supplied by James Tucker). Rake no long aborts if it can't find the
-  directory.
-* Added fix to handle ruby installations in directories with spaces in
-  their name.
-== Version 0.8.2
-* Fixed bug in package task so that it will include the subdir
-  directory in the package for testing. (Bug found by Adam Majer)
-* Added ENV var to rakefile to prevent OS X from including extended
-  attribute junk in a tar file. (Bug found by Adam Majer)
-* Fixed filename dependency order bug in test_inspect_pending and
-  test_to_s_pending. (Bug found by Adam Majer)
-* Fixed check for file utils options to make them immune to the
-  symbol/string differences. (Patch supplied by Edwin Pratomo)
-* Fixed bug with rules involving multiple source (Patch supplied by
-  Emanuel Indermühle)
-* Switched from getoptlong to optparse (patches supplied by Edwin
-  Pratomo)
-* The -T option will now attempt to dynamically sense the size of the
-  terminal.  RAKE_COLUMNS will override any dynamic sensing.
-* FileList#clone and FileList#dup have better sematics w.r.t. taint
-  and freeze.
-* Added ability clear prerequisites, and/or actions from an existing
-  task.
-* Added the ability to reenable a task to be invoked a second time.
-* Changed RDoc test task to have no default template. This makes it
-  easier for the tempate to pick up the template from the environment.
-* Changed from using Mutex to Monitor. Evidently Mutex causes thread
-  join errors when Ruby is compiled with -disable-pthreads. (Patch
-  supplied by Ittay Dror)
-* Fixed bug in makefile parser that had problems with extra spaces in
-  file task names. (Patch supplied by Ittay Dror)
-* Added a performance patch for reading large makefile dependency
-  files. (Patch supplied by Ittay Dror)
-* Default values for task arguments can easily be specified with the
-  :with_defaults method. (Idea for default argument merging supplied
-  by (Adam Q. Salter)
-* The -T output will only self-truncate if the output is a tty.
-  However, if RAKE_COLUMNS is explicitly set, it will be honored in
-  any case. (Patch provided by Gavin Stark).
-* Numerous fixes for running under windows. A big thanks to Bheeshmar
-  Redheendran for spending a good part of the afternoon at the
-  Lonestar Ruby Conference to help me work out these issues.
-== Version 0.8.1
-* Removed requires on parsedate.rb (in Ftptools)
-* Removed ftools from rake.rb.  Made it options in sys.rb
-== Version 0.8.0
-* Added task parameters (e.g. "rake build[version7]")
-* Made task parameters passable to prerequisites.
-* Comments are limited to 80 columns or so (suggested by Jamis Buck).
-* Added -D to display full comments (suggested by Jamis Buck).
-* The rake program will set the status value used in any explicit
-  exit(n) calls. (patch provided by Stephen Touset)
-* Fixed error in functional tests that were not including session (and
-  silently skipping the functionl tests.
-* Removed --usage and make -h the same as -H.
-* Make a prettier inspect for tasks.
-== Version 0.7.3
-* Added existing and existing! methods to FileList
-* FileLists now claim to be Arrays (via is_a?) to get better support
-  from the FileUtil module.
-* Added init and top_level for custom rake applications.
-== Version 0.7.2
-* Error messages are now send to stderr rather than stdout (from
-  Payton Quackenbush).
-* Better error handling on invalid command line arguments (from Payton
-  Quackenbush).
-* Added rcov task and updated unit testing for better code coverage.
-* Fixed some bugs where the application object was going to the global
-  appliation instead of using its own data.
-* Added square and curly bracket patterns to FileList#include (Tilman
-  Sauerbeck).
-* Added plain filename support to rule dependents (suggested by Nobu
-  Nakada).
-* Added pathmap support to rule dependents.
-* Added a 'tasks' method to a namespace to get a list of tasks
-  associated with the namespace.
-* Fixed the method name leak from FileUtils (bug found by Glenn
-  Vanderburg).
-* Added rake_extension to handle detection of extension collisions.
-* Added test for noop, bad_option and verbose flags to sh command.
-* Removed dependency on internal fu_xxx functions from FileUtils.
-* Added a 'shame' task to the Rakefile.
-* Added tar_command and zip_command options to the Package task.
-* Added a description to the gem task in GemPackageTask.
-* Fixed a bug when rules have multiple prerequisites (patch by Joel
-  VanderWerf)
-* Added a protected 'require "rubygems"' to test/test_application to
-  unbreak cruisecontrol.rb.
-* Added the handful of RakeFileUtils to the private method as well.
-* Added block based exclusion.
-* The clean task will no longer delete 'core' if it is a directory.
-* Removed rake_dup.  Now we just simply rescue a bad dup.
-* Refactored the FileList reject logic to remove duplication.
-* Removed if __FILE__ at the end of the rake.rb file.
-== Version 0.7.1
-* Added optional filter parameter to the --tasks command line option.
-* Added flatten to allow rule transform procs to return lists of
-  prereqs (Joel VanderWerf provided patch).
-* Added pathmap to String and FileList.
-* The -r option will now load .rake files (but a straight require
-  doesn't yet).  NOTE: This is experimental ... it may be
-  discontinued.
-* The -f option without a value will disable the search for a
-  Rakefile.  The assumption is that the -r files are adequate.
-* Fixed the safe_ln function to fall back to cp in more error
-  scenarios.
-== Version 0.7.0
-* Added Rake.original_dir to return the original starting directory of
-  the rake application.
-* Added safe_ln support for openAFS (from Ludvig Omholt).
-* Added --trace reminder on short exception messages (David Heinemeier
-  Hansson suggestion).
-* Added multitask declaration that executes prerequisites in
-  parallel. (Doug Young providied an initial implementation).
-* Fixed missing_const hack to be compatible with Rails. (Jamis Buck
-  supplied test case).
-* Made the RDoc task default to internal (in-process) RDoc formatting.
-  The old behavior is still available by setting the +external+ flag
-  to true.
-* Rakefiles are now loaded with the expanded path to prevent
-  accidental polution from the Ruby load path.
-* The +namespace+ command now returns a NameSpace object that can be
-  used to lookup tasks defined in that namespace.  This allows for
-  better anonymous namespace behavior.
-* Task objects my now be used in prerequisite lists directly.
-== Version 0.6.1
-* Rebuilt 0.6.0 gem without signing.
-== Version 0.6.0
-* Fixed file creation bug in the unit tests (caused infinite loop on
-  windows).
-* Fixed bug where session based functional tests were run under
-  windows.
-* Fixed bug in directory tasks so that updating a directory will not
-  retrigger file tasks depending on the directory (see
-  FileCreationTask and EarlyTime).
-* Added egrep to FileList
-* ruby command now runs same ruby version as rake.
-* Added investigation to task object. (suggested by Martin Fowler)
-* Added ruby_opts to the test task to allow arbitrary ruby options to
-  be passed to the test script. (Greg Fast)
-* Fixed the test loader to ignore options. (Greg Fast)
-* Moved Task, FileTask, FileCreationTask and RakeApp into the Rake
-  module namespace.  Old style namespace behavior can be invoked via
-  the --classic-namespace option. (requested by Kelly Felkins).
-* GemTask is now sensitive to the gem platform (Masao Mutoh).
-* A non-existing file prerequisite will no longer cause an exception
-  (Philipp Neubeck).
-* Multiple prerequisites on Rake rules now allowed (initial patch
-  supplied by Stuart Jansen).
-== Version 0.5.4
-* Added double quotes to the test runner.
-* Added .svn to default ignore list.
-* Updated FileList#include to support nested arrays and filelists.
-== Version 0.5.3
-* Added support for importing Rakefile and other dependencies.
-* Fixed bug so that now rules can chain off of existing tasks as well
-  as existing files.
-* Fixed verbose flag bug in the testing task.  Shortened some failure
-  messages.
-* Make FileUtils methods private at the top level module to avoid
-  accidental method leaking into other objects.
-* Added test loader option to test task.  "testrb" is no longer the
-  default test loader.  It is now eating syntax errors that should
-  halt the unit tests.
-* Revamped FileList so that it works more like and array (addressed
-  flatten bug).  Added many tests around file list.
-* Added +ext+ method to both String and FileList.
-== Version 0.5.0
-* Fixed documentation that was lacking the Rake module name (Tilman
-  Sauerbeck).
-* Added tar.gz and tar.bz2 support to package task (Tilman Sauerbeck).
-* Recursive rules are now supported (Tilman Sauerbeck).
-* Added warning option for the Test Task (requested by Eric Hodel).
-* The jamis rdoc template is only used if it exists.
-* Added fix for Ruby 1.8.2 test/unit and rails problem.
-* Added contributed rake man file (Jani Monoses).
-* Added Brian Candler's fix for problems in --trace and --dry-run
-  mode.
-== Version 0.4.15
-* Fixed a bug that prevented the TESTOPTS flag from working with the
-  revised for 1.8.2 test task.
-* Updated the docs on --trace to indicate that it also enables a full
-  backtrace on errors.
-== Version 0.4.14
-* Modified the TestTask to workaround the Ruby 1.8.2 change in
-  autoexecuting unit tests.
-== Version 0.4.13
-* Fixed the dry-run flag so it is operating again.
-* Multiple arguments to sh and ruby commands will not be interpreted
-  by the shell (patch provided by Jonathan Paisley).
-== Version 0.4.12
-* Added --silent (-s) to suppress the (in directory) rake message.
-== Version 0.4.11
-* Changed the "don't know how to rake" message (finally)
-* Changes references to a literal "Rakefile" to reference the global
-  variable $rakefile (which contains the actual name of the rakefile).
-== Version 0.4.10
-* Added block support to the "sh" command, allowing users to take
-  special actions on the result of the system call.  E.g.
-    sh "shell_command" do |ok, res|
-      puts "Program returned #{res.exitstatus}" if ! ok
-    end
-== Version 0.4.9
-* Switched to Jamis Buck's RDoc template.
-* Removed autorequire from Rake's gem spec.  This prevents the Rake
-  libraries from loading while using rails.
-== Version 0.4.8
-* Added support for .rb versions of Rakefile.
-* Removed \\\n's from test task.
-* Fixed Ruby 1.9 compatibility issue with FileList.
-== Version 0.4.7
-* Fixed problem in FileList that caused Ruby 1.9 to go into infinite
-  recursion.  Since to_a was removed from Object, it does not need to
-  added back into the list of methods to rewrite in FileList.  (Thanks
-  to Kent Sibilev for pointing this out).
-== Version 0.4.6
-* Removed test version of ln in FileUtils that prevented safe_ln from
-  using ln.
-== Version 0.4.5
-* Upgraded comments in TestTask.
-* FileList to_s and inspect now automatically resolve pending changes.
-* FileList#exclude properly returns the FileList.
-== Version 0.4.4
-* Fixed initialization problem with @comment.
-* Now using multi -r technique in TestTask.  Switch Rakefile back to
-  using the built-in test task macros because the rake runtime is no
-  longer needed.
-* Added 'TEST=filename' and 'TESTOPTS=options' to the Test Task
-  macros.
-* Allow a +test_files+ attribute in test tasks.  This allows more
-  flexibility in specifying test files.
-== Version 0.4.3
-* Fixed Comment leakage.
-== Version 0.4.2
-* Added safe_ln that falls back to a copy if a file link is not supported.
-* Package builder now uses safe_ln.
-== Version 0.4.1
-* Task comments are now additive, combined with "/".
-* Works with (soon to be released) rubygems 0.6.2 (or 0.7.0)
-== Version 0.4.0
-* FileList now uses deferred loading.  The file system is not searched
-  until the first call that needs the file names.
-* VAR=VALUE options are now accepted on the command line and are
-  treated like environment variables.  The values may be tested in a
-  Rakefile by referencing ENV['VAR'].
-* File.mtime is now used (instead of File.new().mtime).
-== Version 0.3.2.x
-* Removed some hidden dependencies on rubygems.  Tests now will test
-  gems only if they are installed.
-* Removed Sys from some example files.  I believe that is that last
-  reference to Sys outside of the contrib area.
-* Updated all copyright notices to include 2004.
-== Version 0.3.2
-* GEM Installation now works with the application stub.
-== Version 0.3.1
-* FileLists now automatically ignore CVS, .bak, !
-* GEM Installation now works.
-== Version 0.3.0
-Promoted 0.2.10.
-== Version 0.2.10
-General
-* Added title to Rake's rdocs
-* Contrib packages are no longer included in the documentation.
-RDoc Issues
-* Removed default for the '--main' option
-* Fixed rendering of the rdoc options
-* Fixed clean/clobber confusion with rerdoc
-* 'title' attribute added
-Package Task Library Issues
-* Version (or explicit :noversion) is required.
-* +package_file+ attribute is now writable
-FileList Issues
-* Dropped bang version of exclude.  Now using ant-like include/exclude semantics.
-* Enabled the "yield self" idiom in FileList#initialize.
-== Version 0.2.9
-This version contains numerous changes as the RubyConf.new(2003)
-presentation was being prepared.  The changes include:
-* The monolithic rubyapp task library is in the process of being
-  dropped in favor of lighter weight task libraries.
-== Version 0.2.7
-* Added "desc" for task descriptions.
-* -T will now display tasks with descriptions.
-* -P will display tasks and prerequisites.
-* Dropped the Sys module in favor of the 1.8.x FileUtils module.  Sys
-  is still supported in the contrib area.
-== Version 0.2.6
-* Moved to RubyForge
-== Version 0.2.5
-* Switched to standard ruby app builder.
-* Added no_match option to file matcher.
-== Version 0.2.4
-* Fixed indir, which neglected to actually change directories.
-== Version 0.2.3
-* Added rake module for a help target
-* Added 'for_files' to Sys
-* Added a $rakefile constant
-* Added test for selecting proper rule with multiple targets.

data/search_biomodel/ruby/1.8/gems/rake-0.9.2/MIT-LICENSE DELETED Viewed

@@ -1,21 +0,0 @@
-Copyright (c) 2003, 2004 Jim Weirich
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.