search_biomodel 1.0.0 → 1.0.1

data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_creation_task.rb

@@ -1,62 +0,0 @@
-require File.expand_path('../helper', __FILE__)
-require 'fileutils'
-
-######################################################################
-class TestRakeFileCreationTask < Rake::TestCase
-  include Rake
-  include Rake::DSL
-
-  DUMMY_DIR = 'testdata/dummy_dir'
-
-  def setup
-    super
-
-    Task.clear
-  end
-
-  def teardown
-    FileUtils.rm_rf DUMMY_DIR
-
-    super
-  end
-
-  def test_file_needed
-    create_dir DUMMY_DIR
-    fc_task = Task[DUMMY_DIR]
-    assert_equal DUMMY_DIR, fc_task.name
-    FileUtils.rm_rf fc_task.name
-    assert fc_task.needed?, "file should be needed"
-    FileUtils.mkdir fc_task.name
-    assert_equal nil, fc_task.prerequisites.collect{|n| Task[n].timestamp}.max
-    assert ! fc_task.needed?, "file should not be needed"
-  end
-
-  def test_directory
-    directory DUMMY_DIR
-    fc_task = Task[DUMMY_DIR]
-    assert_equal DUMMY_DIR, fc_task.name
-    assert FileCreationTask === fc_task
-  end
-
-  def test_no_retriggers_on_filecreate_task
-    create_timed_files(OLDFILE, NEWFILE)
-    t1 = Rake.application.intern(FileCreationTask, OLDFILE).enhance([NEWFILE])
-    t2 = Rake.application.intern(FileCreationTask, NEWFILE)
-    assert ! t2.needed?, "Should not need to build new file"
-    assert ! t1.needed?, "Should not need to rebuild old file because of new"
-  end
-
-  def test_no_retriggers_on_file_task
-    create_timed_files(OLDFILE, NEWFILE)
-    t1 = Rake.application.intern(FileCreationTask, OLDFILE).enhance([NEWFILE])
-    t2 = Rake.application.intern(FileCreationTask, NEWFILE)
-    assert ! t2.needed?, "Should not need to build new file"
-    assert ! t1.needed?, "Should not need to rebuild old file because of new"
-  end
-
-  def test_very_early_timestamp
-    t1 = Rake.application.intern(FileCreationTask, OLDFILE)
-    assert t1.timestamp < Time.now
-    assert t1.timestamp < Time.now - 1000000
-  end
-end

data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_list.rb

@@ -1,633 +0,0 @@
-require File.expand_path('../helper', __FILE__)
-
-class TestRakeFileList < Rake::TestCase
-  FileList = Rake::FileList
-
-  def setup
-    super
-
-    create_test_data
-  end
-
-  def teardown
-#    FileList.select_default_ignore_patterns
-    FileUtils.rm_rf("testdata")
-
-    super
-  end
-
-  def test_delegating_methods_do_not_include_to_a_or_to_ary
-    assert ! FileList::DELEGATING_METHODS.include?("to_a"), "should not include to_a"
-    assert ! FileList::DELEGATING_METHODS.include?(:to_a), "should not include to_a"
-    assert ! FileList::DELEGATING_METHODS.include?("to_ary"), "should not include to_ary"
-    assert ! FileList::DELEGATING_METHODS.include?(:to_ary), "should not include to_ary"
-  end
-
-  def test_create
-    fl = FileList.new
-    assert_equal 0, fl.size
-  end
-
-  def test_create_with_args
-    fl = FileList.new("testdata/*.c", "x")
-    assert_equal ["testdata/abc.c", "testdata/x.c", "testdata/xyz.c", "x"].sort,
-      fl.sort
-  end
-
-  def test_create_with_block
-    fl = FileList.new { |f| f.include("x") }
-    assert_equal ["x"], fl.resolve
-  end
-
-  def test_create_with_brackets
-    fl = FileList["testdata/*.c", "x"]
-    assert_equal ["testdata/abc.c", "testdata/x.c", "testdata/xyz.c", "x"].sort,
-      fl.sort
-  end
-
-  def test_create_with_brackets_and_filelist
-    fl = FileList[FileList["testdata/*.c", "x"]]
-    assert_equal ["testdata/abc.c", "testdata/x.c", "testdata/xyz.c", "x"].sort,
-      fl.sort
-  end
-
-  def test_include_with_another_array
-    fl = FileList.new.include(["x", "y", "z"])
-    assert_equal ["x", "y", "z"].sort, fl.sort
-  end
-
-  def test_include_with_another_filelist
-    fl = FileList.new.include(FileList["testdata/*.c", "x"])
-    assert_equal ["testdata/abc.c", "testdata/x.c", "testdata/xyz.c", "x"].sort,
-      fl.sort
-  end
-
-  def test_append
-    fl = FileList.new
-    fl << "a.rb" << "b.rb"
-    assert_equal ['a.rb', 'b.rb'], fl
-  end
-
-  def test_add_many
-    fl = FileList.new
-    fl.include %w(a d c)
-    fl.include('x', 'y')
-    assert_equal ['a', 'd', 'c', 'x', 'y'], fl
-    assert_equal ['a', 'd', 'c', 'x', 'y'], fl.resolve
-  end
-
-  def test_add_return
-    f = FileList.new
-    g = f << "x"
-    assert_equal f.object_id, g.object_id
-    h = f.include("y")
-    assert_equal f.object_id, h.object_id
-  end
-
-  def test_match
-    fl = FileList.new
-    fl.include('test/test_*.rb')
-    assert fl.include?("test/test_rake_file_list.rb")
-    assert fl.size > 3
-    fl.each { |fn| assert_match(/\.rb$/, fn) }
-  end
-
-  def test_add_matching
-    fl = FileList.new
-    fl << "a.java"
-    fl.include("test/*.rb")
-    assert_equal "a.java", fl[0]
-    assert fl.size > 2
-    assert fl.include?("test/test_rake_file_list.rb")
-  end
-
-  def test_multiple_patterns
-    create_test_data
-    fl = FileList.new
-    fl.include('*.c', '*xist*')
-    assert_equal [], fl
-    fl.include('testdata/*.c', 'testdata/*xist*')
-    assert_equal [
-      'testdata/x.c', 'testdata/xyz.c', 'testdata/abc.c', 'testdata/existing'
-    ].sort, fl.sort
-  end
-
-  def test_square_bracket_pattern
-    fl = FileList.new
-    fl.include("testdata/abc.[ch]")
-    assert fl.size == 2
-    assert fl.include?("testdata/abc.c")
-    assert fl.include?("testdata/abc.h")
-  end
-
-  def test_curly_bracket_pattern
-    fl = FileList.new
-    fl.include("testdata/abc.{c,h}")
-    assert fl.size == 2
-    assert fl.include?("testdata/abc.c")
-    assert fl.include?("testdata/abc.h")
-  end
-
-  def test_reject
-    fl = FileList.new
-    fl.include %w(testdata/x.c testdata/abc.c testdata/xyz.c testdata/existing)
-    fl.reject! { |fn| fn =~ %r{/x} }
-    assert_equal [
-      'testdata/abc.c', 'testdata/existing'
-    ], fl
-  end
-
-  def test_exclude
-    fl = FileList['testdata/x.c', 'testdata/abc.c', 'testdata/xyz.c', 'testdata/existing']
-    fl.each { |fn| touch fn, :verbose => false }
-    x = fl.exclude(%r{/x.+\.})
-    assert_equal FileList, x.class
-    assert_equal %w(testdata/x.c testdata/abc.c testdata/existing), fl
-    assert_equal fl.object_id, x.object_id
-    fl.exclude('testdata/*.c')
-    assert_equal ['testdata/existing'], fl
-    fl.exclude('testdata/existing')
-    assert_equal [], fl
-  end
-
-  def test_excluding_via_block
-    fl = FileList['testdata/a.c', 'testdata/b.c', 'testdata/xyz.c']
-    fl.exclude { |fn| fn.pathmap('%n') == 'xyz' }
-    assert fl.exclude?("xyz.c"), "Should exclude xyz.c"
-    assert_equal ['testdata/a.c', 'testdata/b.c'], fl
-  end
-
-  def test_exclude_return_on_create
-    fl = FileList['testdata/*'].exclude(/.*\.[hcx]$/)
-    assert_equal ['testdata/existing', 'testdata/cfiles'].sort, fl.sort
-    assert_equal FileList, fl.class
-  end
-
-  def test_exclude_with_string_return_on_create
-    fl = FileList['testdata/*'].exclude('testdata/abc.c')
-    assert_equal %w(testdata/existing testdata/cfiles testdata/x.c testdata/abc.h testdata/abc.x testdata/xyz.c).sort, fl.sort
-    assert_equal FileList, fl.class
-  end
-
-  def test_default_exclude
-    fl = FileList.new
-    fl.clear_exclude
-    fl.include("**/*~", "**/*.bak", "**/core")
-    assert fl.member?("testdata/core"), "Should include core"
-    assert fl.member?("testdata/x.bak"), "Should include .bak files"
-  end
-
-  def test_unique
-    fl = FileList.new
-    fl << "x.c" << "a.c" << "b.rb" << "a.c"
-    assert_equal ['x.c', 'a.c', 'b.rb', 'a.c'], fl
-    fl.uniq!
-    assert_equal ['x.c', 'a.c', 'b.rb'], fl
-  end
-
-  def test_to_string
-    fl = FileList.new
-    fl << "a.java" << "b.java"
-    assert_equal  "a.java b.java", fl.to_s
-    assert_equal  "a.java b.java", "#{fl}"
-  end
-
-  def test_to_array
-    fl = FileList['a.java', 'b.java']
-    assert_equal  ['a.java', 'b.java'], fl.to_a
-    assert_equal  Array, fl.to_a.class
-    assert_equal  ['a.java', 'b.java'], fl.to_ary
-    assert_equal  Array, fl.to_ary.class
-  end
-
-  def test_to_s_pending
-    fl = FileList['testdata/abc.*']
-    result = fl.to_s
-    assert_match(%r{testdata/abc\.c}, result)
-    assert_match(%r{testdata/abc\.h}, result)
-    assert_match(%r{testdata/abc\.x}, result)
-    assert_match(%r{(testdata/abc\..\b ?){2}}, result)
-  end
-
-  def test_inspect_pending
-    fl = FileList['testdata/abc.*']
-    result = fl.inspect
-    assert_match(%r{"testdata/abc\.c"}, result)
-    assert_match(%r{"testdata/abc\.h"}, result)
-    assert_match(%r{"testdata/abc\.x"}, result)
-    assert_match(%r|^\[("testdata/abc\..", ){2}"testdata/abc\.."\]$|, result)
-  end
-
-  def test_sub
-    fl = FileList["testdata/*.c"]
-    f2 = fl.sub(/\.c$/, ".o")
-    assert_equal FileList, f2.class
-    assert_equal ["testdata/abc.o", "testdata/x.o", "testdata/xyz.o"].sort,
-      f2.sort
-    f3 = fl.gsub(/\.c$/, ".o")
-    assert_equal FileList, f3.class
-    assert_equal ["testdata/abc.o", "testdata/x.o", "testdata/xyz.o"].sort,
-      f3.sort
-  end
-
-  def test_claim_to_be_a_kind_of_array
-    fl = FileList['testdata/*.c']
-    assert fl.is_a?(Array)
-    assert fl.kind_of?(Array)
-  end
-
-  def test_claim_to_be_a_kind_of_filelist
-    fl = FileList['testdata/*.c']
-    assert fl.is_a?(FileList)
-    assert fl.kind_of?(FileList)
-  end
-
-  def test_claim_to_be_a_filelist_instance
-    fl = FileList['testdata/*.c']
-    assert fl.instance_of?(FileList)
-  end
-
-  def test_dont_claim_to_be_an_array_instance
-    fl = FileList['testdata/*.c']
-    assert ! fl.instance_of?(Array)
-  end
-
-  def test_sub!
-    f = "x/a.c"
-    fl = FileList[f, "x/b.c"]
-    res = fl.sub!(/\.c$/, ".o")
-    assert_equal ["x/a.o", "x/b.o"].sort, fl.sort
-    assert_equal "x/a.c", f
-    assert_equal fl.object_id, res.object_id
-  end
-
-  def test_sub_with_block
-    fl = FileList["src/org/onestepback/a.java", "src/org/onestepback/b.java"]
-# The block version doesn't work the way I want it to ...
-#    f2 = fl.sub(%r{^src/(.*)\.java$}) { |x|  "classes/" + $1 + ".class" }
-    f2 = fl.sub(%r{^src/(.*)\.java$}, "classes/\\1.class")
-    assert_equal [
-      "classes/org/onestepback/a.class",
-      "classes/org/onestepback/b.class"
-    ].sort,
-      f2.sort
-  end
-
-  def test_string_ext
-    assert_equal "one.net", "one.two".ext("net")
-    assert_equal "one.net", "one.two".ext(".net")
-    assert_equal "one.net", "one".ext("net")
-    assert_equal "one.net", "one".ext(".net")
-    assert_equal "one.two.net", "one.two.c".ext(".net")
-    assert_equal "one/two.net", "one/two.c".ext(".net")
-    assert_equal "one.x/two.net", "one.x/two.c".ext(".net")
-    assert_equal "one.x/two.net", "one.x/two".ext(".net")
-    assert_equal ".onerc.net", ".onerc.dot".ext("net")
-    assert_equal ".onerc.net", ".onerc".ext("net")
-    assert_equal ".a/.onerc.net", ".a/.onerc".ext("net")
-    assert_equal "one", "one.two".ext('')
-    assert_equal "one", "one.two".ext
-    assert_equal ".one", ".one.two".ext
-    assert_equal ".one", ".one".ext
-    assert_equal ".", ".".ext("c")
-    assert_equal "..", "..".ext("c")
-    # These only need to work in windows
-    if Rake::Win32.windows?
-      assert_equal "one.x\\two.net", "one.x\\two.c".ext(".net")
-      assert_equal "one.x\\two.net", "one.x\\two".ext(".net")
-    end
-  end
-
-  def test_filelist_ext
-    assert_equal FileList['one.c', '.one.c'],
-      FileList['one.net', '.one'].ext('c')
-  end
-
-  def test_gsub
-    create_test_data
-    fl = FileList["testdata/*.c"]
-    f2 = fl.gsub(/a/, "A")
-    assert_equal ["testdAtA/Abc.c", "testdAtA/x.c", "testdAtA/xyz.c"].sort,
-      f2.sort
-  end
-
-  def test_gsub!
-    create_test_data
-    f = FileList["testdata/*.c"]
-    f.gsub!(/a/, "A")
-    assert_equal ["testdAtA/Abc.c", "testdAtA/x.c", "testdAtA/xyz.c"].sort,
-      f.sort
-  end
-
-  def test_egrep_returns_0_if_no_matches
-    files = FileList['test/lib/*_test.rb'].exclude("test/lib/filelist_test.rb")
-    assert_equal 0, files.egrep(/XYZZY/) { }
-  end
-
-  def test_egrep_with_output
-    files = FileList['test/test_*.rb']
-    the_line_number = __LINE__ + 1
-    out, = capture_io do files.egrep(/PUGH/) end
-    assert_match(/:#{the_line_number}:/, out)
-  end
-
-  def test_egrep_with_block
-    files = FileList['test/test_*.rb']
-    found = nil
-    the_line_number = __LINE__ + 1
-    files.egrep(/XYZZY/) do |fn, ln, line |
-      found = [fn, ln, line]
-    end
-    assert_equal 'test/test_rake_file_list.rb', found[0]
-    assert_equal the_line_number, found[1]
-    assert_match(/files\.egrep/, found[2])
-  end
-
-  def test_egrep_with_error
-    files = FileList['test/test_*.rb']
-    _, err = capture_io do
-      files.egrep(/ANYTHING/) do |fn, ln, line |
-        fail "_EGREP_FAILURE_"
-      end
-    end
-    assert_match(/_EGREP_FAILURE_/, err)
-  end
-
-  def test_existing
-    fl = FileList['testdata/abc.c', 'testdata/notthere.c']
-    assert_equal ["testdata/abc.c"], fl.existing
-    assert fl.existing.is_a?(FileList)
-  end
-
-  def test_existing!
-    fl = FileList['testdata/abc.c', 'testdata/notthere.c']
-    result = fl.existing!
-    assert_equal ["testdata/abc.c"], fl
-    assert_equal fl.object_id, result.object_id
-  end
-
-  def test_ignore_special
-    f = FileList['testdata/*']
-    assert ! f.include?("testdata/CVS"), "Should not contain CVS"
-    assert ! f.include?("testdata/.svn"), "Should not contain .svn"
-    assert ! f.include?("testdata/.dummy"), "Should not contain dot files"
-    assert ! f.include?("testdata/x.bak"), "Should not contain .bak files"
-    assert ! f.include?("testdata/x~"), "Should not contain ~ files"
-    assert ! f.include?("testdata/core"), "Should not contain core files"
-  end
-
-  def test_clear_ignore_patterns
-    f = FileList['testdata/*', 'testdata/.svn']
-    f.clear_exclude
-    assert f.include?("testdata/abc.c")
-    assert f.include?("testdata/xyz.c")
-    assert f.include?("testdata/CVS")
-    assert f.include?("testdata/.svn")
-    assert f.include?("testdata/x.bak")
-    assert f.include?("testdata/x~")
-  end
-
-  def test_exclude_with_alternate_file_seps
-    fl = FileList.new
-    assert fl.exclude?("x/CVS/y")
-    assert fl.exclude?("x\\CVS\\y")
-    assert fl.exclude?("x/.svn/y")
-    assert fl.exclude?("x\\.svn\\y")
-    assert fl.exclude?("x/core")
-    assert fl.exclude?("x\\core")
-  end
-
-  def test_add_default_exclude_list
-    fl = FileList.new
-    fl.exclude(/~\d+$/)
-    assert fl.exclude?("x/CVS/y")
-    assert fl.exclude?("x\\CVS\\y")
-    assert fl.exclude?("x/.svn/y")
-    assert fl.exclude?("x\\.svn\\y")
-    assert fl.exclude?("x/core")
-    assert fl.exclude?("x\\core")
-    assert fl.exclude?("x/abc~1")
-  end
-
-  def test_basic_array_functions
-    f = FileList['b', 'c', 'a']
-    assert_equal 'b', f.first
-    assert_equal 'b', f[0]
-    assert_equal 'a', f.last
-    assert_equal 'a', f[2]
-    assert_equal 'a', f[-1]
-    assert_equal ['a', 'b', 'c'], f.sort
-    f.sort!
-    assert_equal ['a', 'b', 'c'], f
-  end
-
-  def test_flatten
-    assert_equal ['a', 'testdata/x.c', 'testdata/xyz.c', 'testdata/abc.c'].sort,
-      ['a', FileList['testdata/*.c']].flatten.sort
-  end
-
-  def test_clone_and_dup
-    a = FileList['a', 'b', 'c']
-    c = a.clone
-    d = a.dup
-    a << 'd'
-    assert_equal ['a', 'b', 'c', 'd'], a
-    assert_equal ['a', 'b', 'c'], c
-    assert_equal ['a', 'b', 'c'], d
-  end
-
-  def test_dup_and_clone_replicate_taint
-    a = FileList['a', 'b', 'c']
-    a.taint
-    c = a.clone
-    d = a.dup
-    assert c.tainted?, "Clone should be tainted"
-    assert d.tainted?, "Dup should be tainted"
-  end
-
-  def test_duped_items_will_thaw
-    a = FileList['a', 'b', 'c']
-    a.freeze
-    d = a.dup
-    d << 'more'
-    assert_equal ['a', 'b', 'c', 'more'], d
-  end
-
-  def test_cloned_items_stay_frozen
-    a = FileList['a', 'b', 'c']
-    a.freeze
-    c = a.clone
-    assert_raises(TypeError, RuntimeError) do
-      c << 'more'
-    end
-  end
-
-  def test_array_comparisons
-    fl = FileList['b', 'b']
-    a = ['b', 'a']
-    b = ['b', 'b']
-    c = ['b', 'c']
-    assert_equal( 1,  fl <=> a )
-    assert_equal( 0,  fl <=> b )
-    assert_equal( -1, fl <=> c )
-    assert_equal( -1, a <=> fl )
-    assert_equal( 0,  b <=> fl )
-    assert_equal( 1,  c <=> fl )
-  end
-
-  def test_array_equality
-    a = FileList['a', 'b']
-    b = ['a', 'b']
-    assert a == b
-    assert b == a
-#   assert a.eql?(b)
-#    assert b.eql?(a)
-    assert ! a.equal?(b)
-    assert ! b.equal?(a)
-  end
-
-  def test_enumeration_methods
-    a = FileList['a', 'b']
-    b = a.collect { |it| it.upcase }
-    assert_equal ['A', 'B'], b
-    assert_equal FileList,  b.class
-
-    b = a.map { |it| it.upcase }
-    assert_equal ['A', 'B'], b
-    assert_equal FileList,  b.class
-
-    b = a.sort
-    assert_equal ['a', 'b'], b
-    assert_equal FileList,  b.class
-
-    b = a.sort_by { |it| it }
-    assert_equal ['a', 'b'], b
-    assert_equal FileList,  b.class
-
-    b = a.find_all { |it| it == 'b'}
-    assert_equal ['b'], b
-    assert_equal FileList,  b.class
-
-    b = a.select { |it| it.size == 1 }
-    assert_equal ['a', 'b'], b
-    assert_equal FileList,  b.class
-
-    b = a.reject { |it| it == 'b' }
-    assert_equal ['a'], b
-    assert_equal FileList,  b.class
-
-    b = a.grep(/./)
-    assert_equal ['a', 'b'], b
-    assert_equal FileList,  b.class
-
-    b = a.partition { |it| it == 'b' }
-    assert_equal [['b'], ['a']], b
-    assert_equal Array, b.class
-    assert_equal FileList,  b[0].class
-    assert_equal FileList,  b[1].class
-
-    b = a.zip(['x', 'y']).to_a
-    assert_equal [['a', 'x'], ['b', 'y']], b
-    assert_equal Array, b.class
-    assert_equal Array, b[0].class
-    assert_equal Array, b[1].class
-  end
-
-  def test_array_operators
-    a = ['a', 'b']
-    b = ['c', 'd']
-    f = FileList['x', 'y']
-    g = FileList['w', 'z']
-
-    r = f + g
-    assert_equal ['x', 'y', 'w', 'z'], r
-    assert_equal FileList, r.class
-
-    r = a + g
-    assert_equal ['a', 'b', 'w', 'z'], r
-    assert_equal Array, r.class
-
-    r = f + b
-    assert_equal ['x', 'y', 'c', 'd'], r
-    assert_equal FileList, r.class
-
-    r = FileList['w', 'x', 'y', 'z'] - f
-    assert_equal ['w', 'z'], r
-    assert_equal FileList, r.class
-
-    r = FileList['w', 'x', 'y', 'z'] & f
-    assert_equal ['x', 'y'], r
-    assert_equal FileList, r.class
-
-    r = f * 2
-    assert_equal ['x', 'y', 'x', 'y'], r
-    assert_equal FileList, r.class
-
-    r = f * ','
-    assert_equal 'x,y', r
-    assert_equal String, r.class
-
-    r = f | ['a', 'x']
-    assert_equal ['a', 'x', 'y'].sort, r.sort
-    assert_equal FileList, r.class
-  end
-
-  def test_other_array_returning_methods
-    f = FileList['a', nil, 'b']
-    r = f.compact
-    assert_equal ['a', 'b'], r
-    assert_equal FileList, r.class
-
-    f = FileList['a', 'b']
-    r = f.concat(['x', 'y'])
-    assert_equal ['a', 'b', 'x', 'y'], r
-    assert_equal FileList, r.class
-
-    f = FileList['a', ['b', 'c'], FileList['d', 'e']]
-    r = f.flatten
-    assert_equal ['a', 'b', 'c', 'd', 'e'], r
-    assert_equal FileList, r.class
-
-    f = FileList['a', 'b', 'a']
-    r = f.uniq
-    assert_equal ['a', 'b'], r
-    assert_equal FileList, r.class
-
-    f = FileList['a', 'b', 'c', 'd']
-    r = f.values_at(1,3)
-    assert_equal ['b', 'd'], r
-    assert_equal FileList, r.class
-  end
-
-  def test_file_utils_can_use_filelists
-    cfiles = FileList['testdata/*.c']
-
-    cp cfiles, @cdir, :verbose => false
-
-    assert File.exist?(File.join(@cdir, 'abc.c'))
-    assert File.exist?(File.join(@cdir, 'xyz.c'))
-    assert File.exist?(File.join(@cdir, 'x.c'))
-  end
-
-  def create_test_data
-    verbose(false) do
-
-      mkdir "testdata" unless File.exist? "testdata"
-      mkdir "testdata/CVS" rescue nil
-      mkdir "testdata/.svn" rescue nil
-      @cdir = "testdata/cfiles"
-      mkdir @cdir rescue nil
-      touch "testdata/.dummy"
-      touch "testdata/x.bak"
-      touch "testdata/x~"
-      touch "testdata/core"
-      touch "testdata/x.c"
-      touch "testdata/xyz.c"
-      touch "testdata/abc.c"
-      touch "testdata/abc.h"
-      touch "testdata/abc.x"
-      touch "testdata/existing"
-    end
-  end
-
-end

data/search_biomodel/ruby/1.8/gems/rake-0.9.2/test/test_rake_file_list_path_map.rb

@@ -1,8 +0,0 @@
-require File.expand_path('../helper', __FILE__)
-
-class TestRakeFileListPathMap < Rake::TestCase
-  def test_file_list_supports_pathmap
-    assert_equal ['a', 'b'], FileList['dir/a.rb', 'dir/b.rb'].pathmap("%n")
-  end
-end
-