search_biomodel 1.0.0 → 1.0.1

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/callsite.c

@@ -1,234 +0,0 @@
-#include <ruby.h>
-#include <ruby/st.h>
-#include <stdlib.h>
-
-#define DEBUG 0
-
-static char callsite_hook_set_p;
-
-typedef struct {
-  const char *sourcefile;
-  unsigned int sourceline;
-  VALUE curr_meth;
-} type_def_site;       
-
-static VALUE caller_info = 0;
-static VALUE method_def_site_info = 0;
-
-static int caller_stack_len = 1;
-
-static VALUE record_callsite_info(VALUE args) {
-  VALUE caller_ary;
-  VALUE curr_meth;
-  VALUE count_hash;
-  VALUE count;
-  VALUE *pargs = (VALUE *)args;
-
-  caller_ary = pargs[0];
-  curr_meth = pargs[1];
-  count_hash = rb_hash_aref(caller_info, curr_meth);
-  
-  if(TYPE(count_hash) != T_HASH) { 
-    /* Qnil, anything else should be impossible unless somebody's been
-     * messing with ObjectSpace */
-    count_hash = rb_hash_new();
-    rb_hash_aset(caller_info, curr_meth, count_hash);
-  }
-  
-  count = rb_hash_aref(count_hash, caller_ary);
-  
-  if(count == Qnil) 
-    count = INT2FIX(0);
-  
-  count = INT2FIX(FIX2UINT(count) + 1);
-  rb_hash_aset(count_hash, caller_ary, count);
-
-  if(DEBUG == 1)
-    printf("CALLSITE: %s -> %s   %d\n", RSTRING_PTR(rb_inspect(curr_meth)), RSTRING_PTR(rb_inspect(caller_ary)), FIX2INT(count));
-
-  return Qnil;
-}
-
-static VALUE record_method_def_site(VALUE args) {
-  type_def_site *pargs = (type_def_site *)args;
-  VALUE def_site_info;
-
-  if( RTEST(rb_hash_aref(method_def_site_info, pargs->curr_meth)) )
-    return Qnil;
-  
-  def_site_info = rb_ary_new();
-  rb_ary_push(def_site_info, rb_str_new2(pargs->sourcefile));
-  rb_ary_push(def_site_info, INT2NUM(pargs->sourceline+1));
-  rb_hash_aset(method_def_site_info, pargs->curr_meth, def_site_info);
-
-  if(DEBUG == 1)
-    printf("DEFSITE: %s:%d  for %s\n", pargs->sourcefile, pargs->sourceline+1, RSTRING_PTR(rb_inspect(pargs->curr_meth)));
-  
-  return Qnil;
-}
-
-static VALUE callsite_custom_backtrace(int lev) {
-  ID id;
-  VALUE klass;
-  VALUE klass_path;
-  VALUE eval_string;
-  
-  rb_frame_method_id_and_class(&id, &klass);
-  
-  if (id == ID_ALLOCATOR)
-    return Qnil;
-  
-  if (klass) {
-    if (TYPE(klass) == T_ICLASS) {
-      klass = RBASIC(klass)->klass;
-    }
-    else if (FL_TEST(klass, FL_SINGLETON)) {
-      klass = rb_iv_get(klass, "__attached__");
-    }
-  }
-  // rb_sprintf("\"#<Class:%s>\"", RSTRING_PTR(klass_path))
-  
-  /*
-  klass = class << klass; self end unless klass === eval("self", binding)
-  */
-  
-  klass_path = rb_class_path(klass);
-  VALUE reciever = rb_funcall(rb_binding_new(), rb_intern("eval"), 1, rb_str_new2("self"));
-  
-  if (rb_funcall(klass, rb_intern("=="), 1, reciever) == Qtrue) {
-    klass_path = rb_sprintf("\"#<Class:%s>\"", RSTRING_PTR(klass_path));
-    OBJ_FREEZE(klass_path);
-  }
-  
-  eval_string = rb_sprintf("caller[%d, 1].map do |line|\nmd = /^([^:]*)(?::(\\d+)(?::in `(?:block in )?(.*)'))?/.match(line)\nraise \"Bad backtrace format\" unless md\n[%s, md[3] ? md[3].to_sym : nil, md[1], (md[2] || '').to_i]\nend", lev, RSTRING_PTR(klass_path));
-  return rb_eval_string(RSTRING_PTR(eval_string));
-}
-
-static void coverage_event_callsite_hook(rb_event_flag_t event, VALUE node,  VALUE self, ID mid, VALUE klass) {
-  VALUE caller_ary;
-  VALUE curr_meth;
-  VALUE args[2];
-  int status;
-
-  caller_ary = callsite_custom_backtrace(caller_stack_len);
-
-  VALUE klass_path;
-  curr_meth = rb_ary_new();
-   
-  rb_frame_method_id_and_class(&mid, &klass);
-  
-  if (mid == ID_ALLOCATOR)
-    return; //Qnil;
-  if (klass) {
-    if (TYPE(klass) == T_ICLASS) {
-      klass = RBASIC(klass)->klass;
-    }
-    else if (FL_TEST(klass, FL_SINGLETON)) {
-      klass = rb_iv_get(klass, "__attached__");
-    }
-  }
-  
-  /*
-  klass = class << klass; self end unless klass === eval("self", binding)
-  */
-  
-  klass_path = rb_class_path(klass);
-  VALUE reciever = rb_funcall(rb_binding_new(), rb_intern("eval"), 1, rb_str_new2("self"));
-
-  if (rb_funcall(klass, rb_intern("=="), 1, reciever) == Qtrue) {
-    klass_path = rb_sprintf("#<Class:%s>", RSTRING_PTR(klass_path));
-    OBJ_FREEZE(klass_path);
-  }
-    
-  rb_ary_push(curr_meth, klass_path);
-  rb_ary_push(curr_meth, ID2SYM(mid));
-
-  args[0] = caller_ary;
-  args[1] = curr_meth;
-  rb_protect(record_callsite_info, (VALUE)args, &status);
-
-  if(!status) {
-    type_def_site args;
-
-    args.sourcefile = rb_sourcefile();
-    args.sourceline = rb_sourceline();
-    args.curr_meth = curr_meth;
-    rb_protect(record_method_def_site, (VALUE)&args, NULL);
-  }
-
-  if(status)
-    rb_gv_set("$!", Qnil);
-}
-
-static VALUE cov_install_callsite_hook(VALUE self) {
-  if(!callsite_hook_set_p) {
-    if(TYPE(caller_info) != T_HASH)
-      caller_info = rb_hash_new();
-    callsite_hook_set_p = 1;
-    VALUE something = 0;
-    rb_add_event_hook(coverage_event_callsite_hook, 
-                      RUBY_EVENT_CALL, something);
-    return Qtrue;
-  } 
-  else
-    return Qfalse;
-}
-
-static VALUE cov_remove_callsite_hook(VALUE self) {
-  if(!callsite_hook_set_p) 
-    return Qfalse;
-  else {
-    rb_remove_event_hook(coverage_event_callsite_hook);
-    callsite_hook_set_p = 0;
-    return Qtrue;
-  }
-}
-
-static VALUE cov_generate_callsite_info(VALUE self) {
-  VALUE ret;
-
-  ret = rb_ary_new();
-  rb_ary_push(ret, caller_info);
-  rb_ary_push(ret, method_def_site_info);
-  return ret;
-}
-
-static VALUE cov_reset_callsite(VALUE self) {
-  if(callsite_hook_set_p) {
-    rb_raise(rb_eRuntimeError, "Cannot reset the callsite info in the middle of a traced run.");
-    return Qnil;
-  }
-  
-  caller_info = rb_hash_new();
-  method_def_site_info = rb_hash_new();
-  return Qnil;
-}
-
-void Init_rcov_callsite() {
-  VALUE mRcov;
-  VALUE mRCOV__;
-  ID id_rcov = rb_intern("Rcov");
-  ID id_coverage__ = rb_intern("RCOV__");
-  // ID id_script_lines__ = rb_intern("SCRIPT_LINES__");
-  
-  if(rb_const_defined(rb_cObject, id_rcov)) 
-    mRcov = rb_const_get(rb_cObject, id_rcov);
-  else
-    mRcov = rb_define_module("Rcov");
-  
-  if(rb_const_defined(mRcov, id_coverage__))
-    mRCOV__ = rb_const_get_at(mRcov, id_coverage__);
-  else
-    mRCOV__ = rb_define_module_under(mRcov, "RCOV__");
-
-  callsite_hook_set_p = 0;
-  caller_info = rb_hash_new();
-  method_def_site_info = rb_hash_new();
-  rb_gc_register_address(&caller_info);
-  rb_gc_register_address(&method_def_site_info);
-  
-  rb_define_singleton_method(mRCOV__, "install_callsite_hook", cov_install_callsite_hook, 0);
-  rb_define_singleton_method(mRCOV__, "remove_callsite_hook", cov_remove_callsite_hook, 0);
-  rb_define_singleton_method(mRCOV__, "generate_callsite_info", cov_generate_callsite_info, 0);
-  rb_define_singleton_method(mRCOV__, "reset_callsite", cov_reset_callsite, 0);
-}

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/1.9/rcovrt.c

@@ -1,264 +0,0 @@
-#include <ruby.h>
-#include <ruby/st.h>
-#include <stdlib.h>
-#include <assert.h>
-
-#define COVERAGE_DEBUG_EVENTS 0
-
-#define RCOVRT_VERSION_MAJOR 2
-#define RCOVRT_VERSION_MINOR 0
-#define RCOVRT_VERSION_REV   0
-
-static VALUE mRcov;
-static VALUE mRCOV__;
-static VALUE oSCRIPT_LINES__;
-static ID id_cover;
-static st_table* coverinfo = 0;
-static char coverage_hook_set_p;
-
-struct cov_array {
-  unsigned int len;
-  unsigned int *ptr;
-};
-
-static struct cov_array *cached_array = 0;
-static char *cached_file = 0; 
-
-static struct cov_array * coverage_increase_counter_uncached(char *sourcefile, unsigned int sourceline, char mark_only) {
-  struct cov_array *carray = NULL;
- 
-  if(sourcefile == NULL) {
-    /* "can't happen", just ignore and avoid segfault */
-    return NULL;
-  } 
-  else if(!st_lookup(coverinfo, (st_data_t)sourcefile, (st_data_t*)&carray)) {
-    VALUE arr;
-
-    arr = rb_hash_aref(oSCRIPT_LINES__, rb_str_new2(sourcefile));
-    if(NIL_P(arr)) 
-      return 0;
-    rb_check_type(arr, T_ARRAY);
-    carray = calloc(1, sizeof(struct cov_array));
-    carray->ptr = calloc(RARRAY_LEN(arr), sizeof(unsigned int));
-    carray->len = RARRAY_LEN(arr);
-    st_insert(coverinfo, (st_data_t)strdup(sourcefile), (st_data_t) carray);
-  } 
-  else {
-    /* recovered carray, sanity check */
-    assert(carray && "failed to create valid carray");
-  }
-
-  if(mark_only) {
-    if(!carray->ptr[sourceline])
-      carray->ptr[sourceline] = 1;
-  } 
-  else {
-    if (carray && carray->len > sourceline) {
-      carray->ptr[sourceline]++;
-    }
-  }
-
-  return carray;
-}
-
-static void coverage_mark_caller() {
-  coverage_increase_counter_uncached(rb_sourcefile(), rb_sourceline(), 1);
-}
-
-static void coverage_increase_counter_cached(char *sourcefile, int sourceline) {
-  if(cached_file == sourcefile && cached_array && cached_array->len > sourceline) {
-    cached_array->ptr[sourceline]++;
-    return;
-  }
-  cached_file = sourcefile;
-  cached_array = coverage_increase_counter_uncached(sourcefile, sourceline, 0);
-}
-
-static void coverage_event_coverage_hook(rb_event_flag_t event, VALUE node, VALUE self, ID mid, VALUE klass) {
-  char *sourcefile;
-  unsigned int sourceline;
-  static unsigned int in_hook = 0;
- 
-  if(in_hook) {
-    return;
-  }
-
-  in_hook++;
-
-  #if COVERAGE_DEBUG_EVENTS
-  do {
-    int status;
-    VALUE old_exception;
-    old_exception = rb_gv_get("$!");
-    rb_protect(rb_inspect, klass, &status);
-    if(!status) {
-      printf("EVENT: %d %s %s %s %d\n", event,
-             klass ? RSTRING(rb_inspect(klass))->ptr : "", 
-             mid ? (mid == ID_ALLOCATOR ? "ID_ALLOCATOR" : rb_id2name(mid))
-             : "unknown",
-             node ? node->nd_file : "", node ? nd_line(node) : 0);
-    } 
-    else {
-      printf("EVENT: %d %s %s %d\n", event,
-             mid ? (mid == ID_ALLOCATOR ? "ID_ALLOCATOR" : rb_id2name(mid)) 
-             : "unknown",
-             node ? node->nd_file : "", node ? nd_line(node) : 0);
-    }
-    rb_gv_set("$!", old_exception);
-  } while (0); 
-  #endif
-
-  if(event & RUBY_EVENT_C_CALL) {
-    coverage_mark_caller();
-  }
-  if(event & (RUBY_EVENT_C_CALL | RUBY_EVENT_C_RETURN | RUBY_EVENT_CLASS)) {
-    in_hook--;
-    return;
-  }
-  
-  sourcefile = rb_sourcefile();
-  sourceline = rb_sourceline();
-  
-  if (0 == sourceline || 0 == sourcefile) {
-    in_hook--;
-    return;
-  }
-  
-  coverage_increase_counter_cached(sourcefile, sourceline);
-  if(event & RUBY_EVENT_CALL)
-    coverage_mark_caller();
-  in_hook--;
-}
-
-static VALUE cov_install_coverage_hook(VALUE self) {
-  if(!coverage_hook_set_p) {
-    if(!coverinfo)
-      coverinfo = st_init_strtable();
-    coverage_hook_set_p = 1;
-    /* TODO: allow C_CALL too, since it's supported already
-     * the overhead is around ~30%, tested on typo */
-    VALUE holder = 0;
-    rb_add_event_hook(coverage_event_coverage_hook, 
-                      RUBY_EVENT_ALL & ~RUBY_EVENT_C_CALL &
-                      ~RUBY_EVENT_C_RETURN & ~RUBY_EVENT_CLASS, holder);
-    return Qtrue;
-  }
-  else
-    return Qfalse;
-}
-
-static int populate_cover(st_data_t key, st_data_t value, st_data_t cover) {
-  VALUE rcover;
-  VALUE rkey;
-  VALUE rval;
-  struct cov_array *carray;
-  unsigned int i;
-  
-  rcover = (VALUE)cover;
-  carray = (struct cov_array *) value;
-  rkey = rb_str_new2((char*) key);
-  rval = rb_ary_new2(carray->len);
-  for(i = 0; i < carray->len; i++)
-    rb_ary_push(rval, UINT2NUM(carray->ptr[i]));
-  
-  rb_hash_aset(rcover, rkey, rval);
-  
-  return ST_CONTINUE;
-}
-
-static int free_table(st_data_t key, st_data_t value, st_data_t ignored) {
-  struct cov_array *carray;
-  
-  carray = (struct cov_array *) value;
-  free((char *)key);
-  free(carray->ptr);
-  free(carray);
-  
-  return ST_CONTINUE;
-}
-
-static VALUE cov_remove_coverage_hook(VALUE self) {
-  if(!coverage_hook_set_p) 
-    return Qfalse;
-  else {
-    rb_remove_event_hook(coverage_event_coverage_hook);
-    coverage_hook_set_p = 0;
-    return Qtrue;
-  }
-}
-
-static VALUE cov_generate_coverage_info(VALUE self) {
-  VALUE cover;
-
-  if(rb_const_defined_at(mRCOV__, id_cover)) {
-    rb_mod_remove_const(mRCOV__, ID2SYM(id_cover));
-  }
-
-  cover = rb_hash_new();
-  if(coverinfo)
-    st_foreach(coverinfo, populate_cover, cover);
-  rb_define_const(mRCOV__, "COVER", cover);
-
-  return cover;
-}
-
-static VALUE cov_reset_coverage(VALUE self) {
-  if(coverage_hook_set_p) {
-    rb_raise(rb_eRuntimeError, "Cannot reset the coverage info in the middle of a traced run.");
-    return Qnil;
-  }
-
-  cached_array = 0;
-  cached_file = 0;
-  st_foreach(coverinfo, free_table, Qnil); 
-  st_free_table(coverinfo);
-  coverinfo = 0;
-
-  return Qnil;
-}
-
-static VALUE cov_ABI(VALUE self) {
-  VALUE ret;
-
-  ret = rb_ary_new();
-  rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_MAJOR));
-  rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_MINOR));
-  rb_ary_push(ret, INT2FIX(RCOVRT_VERSION_REV));
-
-  return ret;
-}
-
-void Init_rcovrt() {
-  ID id_rcov = rb_intern("Rcov");
-  ID id_coverage__ = rb_intern("RCOV__");
-  ID id_script_lines__ = rb_intern("SCRIPT_LINES__");
-  
-  id_cover = rb_intern("COVER");
-  
-  if(rb_const_defined(rb_cObject, id_rcov)) 
-    mRcov = rb_const_get(rb_cObject, id_rcov);
-  else
-    mRcov = rb_define_module("Rcov");
-  
-  if(rb_const_defined(mRcov, id_coverage__))
-    mRCOV__ = rb_const_get_at(mRcov, id_coverage__);
-  else
-    mRCOV__ = rb_define_module_under(mRcov, "RCOV__");
-  
-  if(rb_const_defined(rb_cObject, id_script_lines__))
-    oSCRIPT_LINES__ = rb_const_get(rb_cObject, rb_intern("SCRIPT_LINES__"));
-  else {
-    oSCRIPT_LINES__ = rb_hash_new();
-    rb_const_set(rb_cObject, id_script_lines__, oSCRIPT_LINES__);
-  }
-  
-  coverage_hook_set_p = 0;
-  
-  rb_define_singleton_method(mRCOV__, "install_coverage_hook", cov_install_coverage_hook, 0);
-  rb_define_singleton_method(mRCOV__, "remove_coverage_hook", cov_remove_coverage_hook, 0);
-  rb_define_singleton_method(mRCOV__, "generate_coverage_info", cov_generate_coverage_info, 0);
-  rb_define_singleton_method(mRCOV__, "reset_coverage", cov_reset_coverage, 0);
-  rb_define_singleton_method(mRCOV__, "ABI", cov_ABI, 0);
-  
-  Init_rcov_callsite();
-}

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/Makefile

@@ -1,157 +0,0 @@
-
-SHELL = /bin/sh
-
-#### Start of system configuration section. ####
-
-srcdir = 1.8/
-topdir = /usr/lib/ruby/1.8/x86_64-linux
-hdrdir = $(topdir)
-VPATH = $(srcdir):$(topdir):$(hdrdir)
-exec_prefix = $(prefix)
-prefix = $(DESTDIR)/usr
-sharedstatedir = $(prefix)/com
-mandir = $(prefix)/share/man
-psdir = $(docdir)
-oldincludedir = $(DESTDIR)/usr/include
-localedir = $(datarootdir)/locale
-bindir = $(exec_prefix)/bin
-libexecdir = $(prefix)/lib/ruby1.8
-sitedir = $(DESTDIR)/usr/local/lib/site_ruby
-htmldir = $(docdir)
-vendorarchdir = $(vendorlibdir)/$(sitearch)
-includedir = $(prefix)/include
-infodir = $(prefix)/share/info
-vendorlibdir = $(vendordir)/$(ruby_version)
-sysconfdir = $(DESTDIR)/etc
-libdir = $(exec_prefix)/lib
-sbindir = $(exec_prefix)/sbin
-rubylibdir = $(libdir)/ruby/$(ruby_version)
-docdir = $(datarootdir)/doc/$(PACKAGE)
-dvidir = $(docdir)
-vendordir = $(libdir)/ruby/vendor_ruby
-datarootdir = $(prefix)/share
-pdfdir = $(docdir)
-archdir = $(rubylibdir)/$(arch)
-sitearchdir = $(sitelibdir)/$(sitearch)
-datadir = $(datarootdir)
-localstatedir = $(DESTDIR)/var
-sitelibdir = $(sitedir)/$(ruby_version)
-
-CC = gcc
-LIBRUBY = $(LIBRUBY_SO)
-LIBRUBY_A = lib$(RUBY_SO_NAME)-static.a
-LIBRUBYARG_SHARED = -l$(RUBY_SO_NAME)
-LIBRUBYARG_STATIC = -l$(RUBY_SO_NAME)-static
-
-RUBY_EXTCONF_H = 
-CFLAGS   =  -fPIC -fno-strict-aliasing -g -g -O2  -fPIC $(cflags) 
-INCFLAGS = -I. -I$(topdir) -I$(hdrdir) -I$(srcdir)
-DEFS     = 
-CPPFLAGS =   $(DEFS) $(cppflags)
-CXXFLAGS = $(CFLAGS) 
-ldflags  = -L. -Wl,-Bsymbolic-functions -rdynamic -Wl,-export-dynamic
-dldflags = 
-archflag = 
-DLDFLAGS = $(ldflags) $(dldflags) $(archflag)
-LDSHARED = $(CC) -shared
-AR = ar
-EXEEXT = 
-
-RUBY_INSTALL_NAME = ruby1.8
-RUBY_SO_NAME = ruby1.8
-arch = x86_64-linux
-sitearch = x86_64-linux
-ruby_version = 1.8
-ruby = /usr/bin/ruby1.8
-RUBY = $(ruby)
-RM = rm -f
-MAKEDIRS = mkdir -p
-INSTALL = /usr/bin/install -c
-INSTALL_PROG = $(INSTALL) -m 0755
-INSTALL_DATA = $(INSTALL) -m 644
-COPY = cp
-
-#### End of system configuration section. ####
-
-preload = 
-
-libpath = . $(libdir)
-LIBPATH =  -L. -L$(libdir)
-DEFFILE = 
-
-CLEANFILES = mkmf.log
-DISTCLEANFILES = 
-
-extout = 
-extout_prefix = 
-target_prefix = 
-LOCAL_LIBS = 
-LIBS = $(LIBRUBYARG_SHARED)  -lpthread -lrt -ldl -lcrypt -lm   -lc
-SRCS = rcovrt.c callsite.c
-OBJS = rcovrt.o callsite.o
-TARGET = rcovrt
-DLLIB = $(TARGET).so
-EXTSTATIC = 
-STATIC_LIB = 
-
-BINDIR        = $(bindir)
-RUBYCOMMONDIR = $(sitedir)$(target_prefix)
-RUBYLIBDIR = /home/cspc018/Work/Repos/gems/search_biomodel/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib$(target_prefix)
-RUBYARCHDIR = /home/cspc018/Work/Repos/gems/search_biomodel/search_biomodel/ruby/1.8/gems/rcov-0.9.9/lib$(target_prefix)
-
-TARGET_SO     = $(DLLIB)
-CLEANLIBS     = $(TARGET).so $(TARGET).il? $(TARGET).tds $(TARGET).map
-CLEANOBJS     = *.o *.a *.s[ol] *.pdb *.exp *.bak
-
-all:		$(DLLIB)
-static:		$(STATIC_LIB)
-
-clean:
-		@-$(RM) $(CLEANLIBS) $(CLEANOBJS) $(CLEANFILES)
-
-distclean:	clean
-		@-$(RM) Makefile $(RUBY_EXTCONF_H) conftest.* mkmf.log
-		@-$(RM) core ruby$(EXEEXT) *~ $(DISTCLEANFILES)
-
-realclean:	distclean
-install: install-so install-rb
-
-install-so: $(RUBYARCHDIR)
-install-so: $(RUBYARCHDIR)/$(DLLIB)
-$(RUBYARCHDIR)/$(DLLIB): $(DLLIB)
-	$(INSTALL_PROG) $(DLLIB) $(RUBYARCHDIR)
-install-rb: pre-install-rb install-rb-default
-install-rb-default: pre-install-rb-default
-pre-install-rb: Makefile
-pre-install-rb-default: Makefile
-$(RUBYARCHDIR):
-	$(MAKEDIRS) $@
-
-site-install: site-install-so site-install-rb
-site-install-so: install-so
-site-install-rb: install-rb
-
-.SUFFIXES: .c .m .cc .cxx .cpp .C .o
-
-.cc.o:
-	$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
-
-.cxx.o:
-	$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
-
-.cpp.o:
-	$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
-
-.C.o:
-	$(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) -c $<
-
-.c.o:
-	$(CC) $(INCFLAGS) $(CPPFLAGS) $(CFLAGS) -c $<
-
-$(DLLIB): $(OBJS) Makefile
-	@-$(RM) $@
-	$(LDSHARED) -o $@ $(OBJS) $(LIBPATH) $(DLDFLAGS) $(LOCAL_LIBS) $(LIBS)
-
-
-
-$(OBJS): ruby.h defines.h

data/search_biomodel/ruby/1.8/gems/rcov-0.9.9/ext/rcovrt/extconf.rb

@@ -1,21 +0,0 @@
-require 'mkmf'
-
-dir_config("gcov")
-if ENV["USE_GCOV"] and Config::CONFIG['CC'] =~ /gcc/ and 
-  have_library("gcov", "__gcov_open")
-
-  $CFLAGS << " -fprofile-arcs -ftest-coverage"
-  if RUBY_VERSION =~ /1.9/
-    $CFLAGS << ' -DRUBY_19_COMPATIBILITY'
-    create_makefile("rcovrt", "1.9/")
-  else
-    create_makefile("rcovrt", "1.8/")
-  end
-else
-  if RUBY_VERSION =~ /1.9/
-    $CFLAGS << ' -DRUBY_19_COMPATIBILITY'
-    create_makefile("rcovrt", "1.9/")
-  else
-    create_makefile("rcovrt", "1.8/")
-  end
-end