search_biomodel 1.0.0 → 1.0.1

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/libxml.rb

@@ -1,420 +0,0 @@
-# :stopdoc:
-module Nokogiri
-  module LibXML
-    extend FFI::Library
-    if RUBY_PLATFORM =~ /java/ && RbConfig::CONFIG['host_os'] =~ /(mswin|mingw)/i
-      raise(RuntimeError, "Nokogiri requires JRuby 1.4.0 or later on Windows") if JRUBY_VERSION < "1.4.0"
-      dll_dir = File.expand_path(File.join(File.dirname(__FILE__), "..", "..", "..", "ext", "nokogiri"))
-      libs = ["libxml2.dll", "libxslt.dll", "libexslt.dll"].collect do |lib|
-        File.join(dll_dir, lib).tr("/","\\") # see http://jira.codehaus.org/browse/JRUBY-2763
-      end + ["msvcrt"]
-      ffi_lib(*libs)
-    else
-      ffi_lib 'xml2', 'xslt', 'exslt'
-    end
-
-    # globals.c
-    attach_function :__xmlParserVersion, [], :pointer
-    attach_function :__xmlIndentTreeOutput, [], :pointer
-    attach_function :__xmlTreeIndentString, [], :pointer
-    attach_function :xmlDeregisterNodeDefault, [:pointer], :pointer
-  end
-
-  LIBXML_PARSER_VERSION = LibXML.__xmlParserVersion().read_pointer.read_string
-  LIBXML_VERSION = LIBXML_PARSER_VERSION.scan(/^(.*)(..)(..)$/).first.collect{|j|j.to_i}.join(".")
-
-  LIBXML_ICONV_ENABLED = true # sigh.
-end
-
-require 'nokogiri/version'
-
-Nokogiri::VERSION_INFO['libxml'] = {}
-Nokogiri::VERSION_INFO['libxml']['loaded'] = Nokogiri::LIBXML_VERSION
-Nokogiri::VERSION_INFO['libxml']['binding'] = 'ffi'
-if RUBY_PLATFORM =~ /java/
-  Nokogiri::VERSION_INFO['libxml']['platform'] = 'jruby'
-  raise(RuntimeError, "Nokogiri requires JRuby 1.3.0 or later") if JRUBY_VERSION < "1.3.0"
-else
-  Nokogiri::VERSION_INFO['libxml']['platform'] = 'ruby'
-end
-
-module Nokogiri
-  module LibXML
-    XML_CHAR_ENCODING_ERROR = -1
-
-    # useful callback signatures
-    callback :syntax_error_handler, [:pointer, :pointer], :void
-    callback :generic_error_handler, [:pointer, :string], :void
-    callback :io_write_callback, [:pointer, :string, :int], :int
-    callback :io_read_callback, [:pointer, :pointer, :int], :int
-    callback :io_close_callback, [:pointer], :int
-    callback :hash_copier_callback, [:pointer, :pointer, :string], :void
-    callback :xpath_callback, [:pointer, :int], :void
-    callback :xpath_lookup_callback, [:pointer, :string, :pointer], :xpath_callback
-    callback :start_document_sax_func, [:pointer], :void
-    callback :end_document_sax_func, [:pointer], :void
-    callback :start_element_sax_func, [:pointer, :string, :pointer], :void
-    callback :end_element_sax_func, [:pointer, :string], :void
-    callback :characters_sax_func, [:pointer, :string, :int], :void
-    callback :comment_sax_func, [:pointer, :string], :void
-    callback :warning_sax_func, [:pointer, :string], :void
-    callback :error_sax_func, [:pointer, :string], :void
-    callback :cdata_block_sax_func, [:pointer, :string, :int], :void
-    callback :start_element_ns_sax2_func, [:pointer, :pointer, :pointer, :pointer, :int, :pointer, :int, :int, :pointer], :void
-    callback :end_element_ns_sax2_func, [:pointer, :pointer, :pointer, :pointer], :void
-    callback :xslt_function_init, [:pointer, :string], :pointer
-    callback :xslt_function_shutdown, [:pointer, :string, :pointer], :void
-    callback :xslt_function_caller, [:pointer, :int], :void
-
-    # encoding.c
-    attach_function :xmlFindCharEncodingHandler, [:string], :pointer
-    attach_function :xmlDelEncodingAlias, [:string], :int
-    attach_function :xmlAddEncodingAlias, [:string, :string], :int
-    attach_function :xmlCleanupEncodingAliases, [], :void
-
-    # HTMLparser.c
-    attach_function :htmlReadMemory, [:string, :int, :string, :string, :int], :pointer
-    attach_function :htmlReadIO, [:io_read_callback, :io_close_callback, :pointer, :string, :string, :int], :pointer
-    attach_function :htmlNewDoc, [:string, :string], :pointer
-    attach_function :htmlTagLookup, [:string], :pointer
-    attach_function :htmlEntityLookup, [:string], :pointer
-    attach_function :htmlSAXParseFile, [:string, :pointer, :pointer, :pointer], :pointer # second arg 'encoding' should be a string, but we assign it as a pointer elsewhere
-    attach_function :htmlSAXParseDoc, [:pointer, :pointer, :pointer, :pointer], :pointer # second arg 'encoding' should be a string, but we assign it as a pointer elsewhere
-    attach_function :htmlCreateMemoryParserCtxt, [:pointer, :int], :pointer
-    attach_function :htmlCreateFileParserCtxt, [:pointer, :pointer], :pointer
-    attach_function :htmlParseDocument, [:pointer], :int
-    attach_function :htmlHandleOmittedElem, [:int], :int
-
-    # HTMLtree.c
-    attach_function :htmlDocDumpMemory, [:pointer, :pointer, :pointer], :void
-    attach_function :htmlNodeDump, [:pointer, :pointer, :pointer], :int
-    attach_function :htmlGetMetaEncoding, [:pointer], :string # returns const char*
-    attach_function :htmlSetMetaEncoding, [:pointer, :string], :void
-
-    # parser.c
-    attach_function :xmlReadMemory, [:string, :int, :string, :string, :int], :pointer
-    attach_function :xmlInitParser, [], :void
-    attach_function :xmlReadIO, [:io_read_callback, :io_close_callback, :pointer, :string, :string, :int], :pointer
-    attach_function :xmlCreateIOParserCtxt, [:pointer, :pointer, :io_read_callback, :io_close_callback, :pointer, :int], :pointer
-    attach_function :xmlCreateMemoryParserCtxt, [:pointer, :int], :pointer
-    attach_function :xmlCreateFileParserCtxt, [:pointer], :pointer
-    attach_function :xmlSAXUserParseMemory, [:pointer, :pointer, :string, :int], :int
-    attach_function :xmlSAXUserParseFile, [:pointer, :pointer, :string], :int
-    attach_function :xmlParseDocument, [:pointer], :int
-    attach_function :xmlFreeParserCtxt, [:pointer], :void
-    attach_function :xmlCreatePushParserCtxt, [:pointer, :pointer, :string, :int, :string], :pointer
-    attach_function :xmlParseChunk, [:pointer, :string, :int, :int], :int
-    attach_function :xmlCtxtUseOptions, [:pointer, :int], :int
-    attach_function :xmlParseInNodeContext, [:pointer, :string, :int, :int, :pointer], :pointer
-
-    # tree.c
-    attach_function :xmlNewDoc, [:string], :pointer
-    attach_function :xmlNewDocFragment, [:pointer], :pointer
-    attach_function :xmlDocGetRootElement, [:pointer], :pointer
-    attach_function :xmlDocSetRootElement, [:pointer, :pointer], :pointer
-    attach_function :xmlCopyDoc, [:pointer, :int], :pointer
-    attach_function :xmlFreeDoc, [:pointer], :void
-    attach_function :xmlSetTreeDoc, [:pointer, :pointer], :void
-    attach_function :xmlNewReference, [:pointer, :string], :pointer
-    #    attach_function :xmlFirstElementChild, [:pointer], :pointer
-    #    attach_function :xmlLastElementChild, [:pointer], :pointer
-    #    attach_function :xmlNextElementSibling, [:pointer], :pointer
-    attach_function :xmlNewNode, [:pointer, :string], :pointer
-    attach_function :xmlCopyNode, [:pointer, :int], :pointer
-    attach_function :xmlDocCopyNode, [:pointer, :pointer, :int], :pointer
-    attach_function :xmlReplaceNode, [:pointer, :pointer], :pointer
-    attach_function :xmlUnlinkNode, [:pointer], :void
-    attach_function :xmlAddChild, [:pointer, :pointer], :pointer
-    attach_function :xmlAddNextSibling, [:pointer, :pointer], :pointer
-    attach_function :xmlAddPrevSibling, [:pointer, :pointer], :pointer
-    attach_function :xmlIsBlankNode, [:pointer], :int
-    attach_function :xmlHasProp, [:pointer, :string], :pointer
-    attach_function :xmlHasNsProp, [:pointer, :string, :string], :pointer
-    attach_function :xmlGetProp, [:pointer, :string], :pointer # returns char* that must be freed
-    attach_function :xmlSetProp, [:pointer, :string, :string], :pointer
-    attach_function :xmlRemoveProp, [:pointer], :int
-    attach_function :xmlNodeSetContent, [:pointer, :string], :void
-    attach_function :xmlNodeGetContent, [:pointer], :pointer # returns char* that must be freed
-    attach_function :xmlNodeSetName, [:pointer, :string], :void
-    attach_function :xmlGetNodePath, [:pointer], :pointer
-    attach_function :xmlNewCDataBlock, [:pointer, :string, :int], :pointer
-    attach_function :xmlNewDocComment, [:pointer, :string], :pointer
-    attach_function :xmlNewDocPI, [:pointer, :string, :string], :pointer
-    attach_function :xmlNewText, [:string], :pointer
-    attach_function :xmlFreeNode, [:pointer], :void
-    attach_function :xmlFreeNodeList, [:pointer], :void
-    attach_function :xmlEncodeEntitiesReentrant, [:pointer, :string], :pointer # returns char* that must be freed
-    attach_function :xmlStringGetNodeList, [:pointer, :pointer], :pointer # second arg should be a :string, but we only ship the results of xmlEncodeEntitiesReentrant, so let's optimize.
-    attach_function :xmlNewNs, [:pointer, :string, :string], :pointer
-    attach_function :xmlNewNsProp, [:pointer, :pointer, :string, :string], :pointer
-    attach_function :xmlSearchNs, [:pointer, :pointer, :string], :pointer
-    attach_function :xmlSearchNsByHref, [:pointer, :pointer, :string], :pointer
-    attach_function :xmlGetIntSubset, [:pointer], :pointer
-    attach_function :xmlBufferCreate, [], :pointer
-    attach_function :xmlBufferFree, [:pointer], :void
-    attach_function :xmlSplitQName2, [:string, :buffer_out], :pointer # returns char* that must be freed
-    attach_function :xmlNewDocProp, [:pointer, :string, :string], :pointer
-    attach_function :xmlFreePropList, [:pointer], :void
-    attach_function :xmlCreateIntSubset, [:pointer] * 4, :pointer
-    attach_function :xmlNewDtd, [:pointer] * 4, :pointer
-    attach_function :xmlGetNsList, [:pointer, :pointer], :pointer
-    attach_function :xmlTextMerge, [:pointer, :pointer], :pointer
-    attach_function :xmlFreeNsList, [:pointer], :void
-
-    # valid.c
-    attach_function :xmlNewValidCtxt, [], :pointer
-    attach_function :xmlValidateDtd, [:pointer, :pointer, :pointer], :int
-    attach_function :xmlFreeValidCtxt, [:pointer], :void
-
-    # xmlsave.c
-    attach_function :xmlDocDumpMemory, [:pointer, :pointer, :pointer], :void
-    attach_function :xmlNodeDump, [:pointer, :pointer, :pointer, :int, :int], :int
-    attach_function :xmlSaveToIO, [:io_write_callback, :io_close_callback, :pointer, :string, :int], :pointer
-    attach_function :xmlSaveTree, [:pointer, :pointer], :int
-    attach_function :xmlSaveClose, [:pointer], :int
-    attach_function :xmlSetNs, [:pointer, :pointer], :void
-
-    # entities.c
-    attach_function :xmlEncodeSpecialChars, [:pointer, :string], :pointer # returns char* that must be freed
-    attach_function :xmlAddDocEntity, [:pointer, :string, :int, :string, :string, :string], :pointer
-
-    # xpath.c
-    attach_function :xmlXPathInit, [], :void
-    attach_function :xmlXPathNewContext, [:pointer], :pointer
-    attach_function :xmlXPathFreeContext, [:pointer], :void
-    attach_function :xmlXPathEvalExpression, [:string, :pointer], :pointer
-    attach_function :xmlXPathRegisterNs, [:pointer, :string, :string], :int
-    attach_function :xmlXPathCmpNodes, [:pointer, :pointer], :int
-    attach_function :xmlXPathNodeSetContains, [:pointer, :pointer], :int
-    attach_function :xmlXPathNodeSetAdd, [:pointer, :pointer], :void
-    attach_function :xmlXPathNodeSetAddUnique, [:pointer, :pointer], :void
-    attach_function :xmlXPathNodeSetRemove, [:pointer, :int], :void
-    attach_function :xmlXPathNodeSetCreate, [:pointer], :pointer
-    attach_function :xmlXPathNodeSetDel, [:pointer, :pointer], :void
-    attach_function :xmlXPathIntersection, [:pointer, :pointer], :pointer
-    attach_function :xmlXPathFreeNodeSetList, [:pointer], :void
-    attach_function :xmlXPathRegisterFuncLookup, [:pointer, :xpath_lookup_callback, :pointer], :void
-    attach_function :valuePop, [:pointer], :pointer
-    attach_function :valuePush, [:pointer, :pointer], :int
-    attach_function :xmlXPathCastToString, [:pointer], :pointer # returns char* that must be freed
-    attach_function :xmlXPathNodeSetMerge, [:pointer, :pointer], :pointer
-    attach_function :xmlXPathWrapNodeSet, [:pointer], :pointer
-    attach_function :xmlXPathWrapCString, [:pointer], :pointer # should take a :string, but we optimize
-    attach_function :xmlXPathWrapString, [:pointer], :pointer # should take a :string, but we optimize
-    attach_function :xmlXPathNewBoolean, [:int], :pointer
-    attach_function :xmlXPathNewFloat, [:double], :pointer
-    attach_function :xmlXPathNewCString, [:string], :pointer
-    attach_function :xmlXPathRegisterVariable, [:pointer, :string, :pointer], :int
-
-    class << self
-      # these functions are implemented as C macros
-      def xmlXPathReturnNodeSet(ctx, ns)
-        valuePush(ctx, xmlXPathWrapNodeSet(ns))
-      end
-      def xmlXPathReturnTrue(ctx)
-        valuePush(ctx, xmlXPathNewBoolean(1))
-      end
-      def xmlXPathReturnFalse(ctx)
-        valuePush(ctx, xmlXPathNewBoolean(0))
-      end
-      def xmlXPathReturnString(ctx, str)
-        valuePush(ctx, xmlXPathWrapString(str))
-      end
-      def xmlXPathReturnNumber(ctx, val)
-        valuePush(ctx, xmlXPathNewFloat(val))
-      end
-    end
-
-    # xmlstring.c
-    attach_function :xmlStrdup, [:string], :pointer # returns char* that must be freed
-    def self.xmlFree(pointer)
-      # xmlFree is a C preprocessor macro, not an actual function
-      self.free(pointer)
-    end
-
-    # error.c
-    attach_function :xmlSetStructuredErrorFunc, [:pointer, :syntax_error_handler], :void
-    attach_function :xmlSetGenericErrorFunc, [:pointer, :generic_error_handler], :void
-    attach_function :xmlResetLastError, [], :void
-    attach_function :xmlCopyError, [:pointer, :pointer], :int
-    attach_function :xmlGetLastError, [], :pointer
-    attach_function :xmlCtxtGetLastError, [:pointer], :pointer
-
-    # hash.c
-    attach_function :xmlHashScan, [:pointer, :hash_copier_callback, :pointer], :void
-
-    # xmlreader.c
-    attach_function :xmlReaderForMemory, [:pointer, :int, :string, :string, :int], :pointer
-    attach_function :xmlTextReaderGetAttribute, [:pointer, :string], :pointer # returns char* that must be freed
-    attach_function :xmlTextReaderGetAttributeNo, [:pointer, :int], :pointer # returns char* that must be freed
-    attach_function :xmlTextReaderLookupNamespace, [:pointer, :string], :pointer # returns char* that must be freed
-    attach_function :xmlTextReaderRead, [:pointer], :int
-    attach_function :xmlTextReaderReadInnerXml, [:pointer], :pointer
-    attach_function :xmlTextReaderReadOuterXml, [:pointer], :pointer
-    attach_function :xmlTextReaderAttributeCount, [:pointer], :int
-    attach_function :xmlTextReaderCurrentNode, [:pointer], :pointer
-    attach_function :xmlTextReaderExpand, [:pointer], :pointer
-    attach_function :xmlTextReaderIsDefault, [:pointer], :int
-    attach_function :xmlTextReaderDepth, [:pointer], :int
-    attach_function :xmlTextReaderConstXmlLang, [:pointer], :pointer # returns a const char*, but must check for null
-    attach_function :xmlTextReaderConstLocalName, [:pointer], :pointer # returns a const char* that is deallocated with the reader
-    attach_function :xmlTextReaderConstName, [:pointer], :pointer # returns a const char* that is deallocated with the reader
-    attach_function :xmlTextReaderConstNamespaceUri, [:pointer], :pointer # returns a const char* that is deallocated with the reader
-    attach_function :xmlTextReaderConstPrefix, [:pointer], :pointer # returns a const char* that is deallocated with the reader
-    attach_function :xmlTextReaderConstValue, [:pointer], :pointer # returns a const char* that is deallocated on the next read()
-    attach_function :xmlTextReaderConstXmlVersion, [:pointer], :pointer # returns a const char* that is deallocated with the reader
-    attach_function :xmlTextReaderConstBaseUri, [:pointer], :pointer # returns a const char* that is deallocated with the reader
-    attach_function :xmlTextReaderReadState, [:pointer], :int
-    attach_function :xmlTextReaderHasValue, [:pointer], :int
-    attach_function :xmlFreeTextReader, [:pointer], :void
-    attach_function :xmlReaderForIO, [:io_read_callback, :io_close_callback, :pointer, :string, :string, :int], :pointer
-    attach_function :xmlTextReaderNodeType, [:pointer], :int
-    attach_function :xmlTextReaderIsEmptyElement, [:pointer], :int
-
-    # xslt.c
-    attach_function :xsltParseStylesheetDoc, [:pointer], :pointer
-    attach_function :xsltFreeStylesheet, [:pointer], :void
-    attach_function :xsltApplyStylesheet, [:pointer, :pointer, :pointer], :pointer
-    attach_function :xsltSaveResultToString, [:buffer_out, :buffer_out, :pointer, :pointer], :int
-    attach_function :xsltSetGenericErrorFunc, [:pointer, :generic_error_handler], :void
-    attach_function :xsltRegisterExtModule, [:string, :xslt_function_init, :xslt_function_shutdown], :int
-    attach_function :xsltRegisterExtFunction, [:pointer, :string, :string, :xslt_function_caller], :int
-    attach_function :xsltXPathGetTransformContext, [:pointer], :pointer
-
-    # exslt.c
-    attach_function :exsltRegisterAll, [], :void
-
-    # xmlschemas.c
-    attach_function :xmlSchemaNewValidCtxt, [:pointer], :pointer
-    attach_function :xmlSchemaSetValidStructuredErrors, [:pointer, :syntax_error_handler, :pointer], :void unless Nokogiri.is_2_6_16?
-    attach_function :xmlSchemaValidateDoc, [:pointer, :pointer], :void
-    attach_function :xmlSchemaFreeValidCtxt, [:pointer], :void
-    attach_function :xmlSchemaNewMemParserCtxt, [:pointer, :int], :pointer # first arg could be string, but we pass length, so let's optimize
-    attach_function :xmlSchemaSetParserStructuredErrors, [:pointer, :syntax_error_handler, :pointer], :void unless Nokogiri.is_2_6_16?
-    attach_function :xmlSchemaParse, [:pointer], :pointer
-    attach_function :xmlSchemaFreeParserCtxt, [:pointer], :void
-    attach_function :xmlSchemaNewDocParserCtxt, [:pointer], :pointer
-    attach_function :xmlSchemaValidateFile, [:pointer, :string, :int], :int
-
-    # relaxng.c
-    attach_function :xmlRelaxNGNewValidCtxt, [:pointer], :pointer
-    attach_function :xmlRelaxNGSetValidStructuredErrors, [:pointer, :syntax_error_handler, :pointer], :void unless Nokogiri.is_2_6_16?
-    attach_function :xmlRelaxNGValidateDoc, [:pointer, :pointer], :int
-    attach_function :xmlRelaxNGFreeValidCtxt, [:pointer], :void
-    attach_function :xmlRelaxNGNewMemParserCtxt, [:pointer, :int], :pointer # first arg could be string, but we pass length, so let's optimize
-    attach_function :xmlRelaxNGSetParserStructuredErrors, [:pointer, :syntax_error_handler, :pointer], :void unless Nokogiri.is_2_6_16?
-    attach_function :xmlRelaxNGParse, [:pointer], :pointer
-    attach_function :xmlRelaxNGFreeParserCtxt, [:pointer], :void
-    attach_function :xmlRelaxNGNewDocParserCtxt, [:pointer], :pointer
-    attach_function :xmlRelaxNGFree, [:pointer], :void
-
-    # libc
-    attach_function :calloc, [:int, :int], :pointer
-    attach_function :free, [:pointer], :void
-
-    attach_function :xmlParseCharEncoding, [:string], :int
-    attach_function :xmlSwitchToEncoding, [:pointer, :pointer], :void
-
-    # helpers
-    POINTER_SIZE = FFI.type_size(:pointer)
-    def self.pointer_offset(n)
-      n * POINTER_SIZE # byte offset of nth pointer in an array of pointers
-    end
-
-    # ZOMG hacks. see GH#303
-    class << self
-      def xmlFirstElementChildHack(parent)
-        return nil if parent.nil?
-        return nil unless [Nokogiri::XML::Node::ELEMENT_NODE, Nokogiri::XML::Node::ENTITY_NODE, Nokogiri::XML::Node::DOCUMENT_NODE, Nokogiri::XML::Node::HTML_DOCUMENT_NODE].include?(parent.type)
-        parent.children.find { |child| child.element? }
-      end
-
-      def xmlLastElementChildHack(parent)
-        return nil if parent.nil?
-        return nil unless [Nokogiri::XML::Node::ELEMENT_NODE, Nokogiri::XML::Node::ENTITY_NODE, Nokogiri::XML::Node::DOCUMENT_NODE, Nokogiri::XML::Node::HTML_DOCUMENT_NODE].include?(parent.type)
-        parent.children.reverse.find { |child| child.element? }
-      end
-
-      def xmlNextElementSiblingHack(sibling)
-        return nil if sibling.nil?
-        return nil unless [Nokogiri::XML::Node::ELEMENT_NODE, Nokogiri::XML::Node::ENTITY_NODE, Nokogiri::XML::Node::DOCUMENT_NODE, Nokogiri::XML::Node::HTML_DOCUMENT_NODE].include?(sibling.type)
-        while (sibling = sibling.next_sibling)
-          return sibling if sibling.element?
-        end
-        nil
-      end
-    end
-  end
-end
-
-# :startdoc:
-
-require 'nokogiri/syntax_error'
-require 'nokogiri/xml/syntax_error'
-
-[ "io_callbacks",
-  "encoding_handler",
-  "weak_bucket",
-  "structs/common_node",
-  "structs/xml_alloc",
-  "structs/xml_char_encoding_handler",
-  "structs/xml_document",
-  "structs/xml_node",
-  "structs/xml_dtd",
-  "structs/xml_notation",
-  "structs/xml_node_set",
-  "structs/xml_xpath_context",
-  "structs/xml_xpath_object",
-  "structs/xml_xpath_parser_context",
-  "structs/xml_buffer",
-  "structs/xml_syntax_error",
-  "structs/xml_attr",
-  "structs/xml_ns",
-  "structs/xml_schema",
-  "structs/xml_relax_ng",
-  "structs/xml_text_reader",
-  "structs/xml_sax_handler",
-  "structs/xml_sax_push_parser_context",
-  "structs/xml_enumeration",
-  "structs/html_elem_desc",
-  "structs/html_entity_desc",
-  "structs/xslt_stylesheet",
-  "structs/xml_parser_context",
-  "structs/xml_attribute",
-  "structs/xml_element",
-  "structs/xml_entity",
-  "structs/xml_element_content",
-  "structs/xml_parser_input",
-  "xml/node",
-  "xml/namespace",
-  "xml/dtd",
-  "xml/attr",
-  "xml/attribute_decl",
-  "xml/element_decl",
-  "xml/element_content",
-  "xml/entity_decl",
-  "xml/document",
-  "xml/document_fragment",
-  "xml/schema",
-  "xml/relax_ng",
-  "xml/text",
-  "xml/cdata",
-  "xml/comment",
-  "xml/processing_instruction",
-  "xml/node_set",
-  "xml/xpath",
-  "xml/xpath_context",
-  "xml/syntax_error",
-  "xml/reader",
-  "xml/entity_reference",
-  "xml/sax/parser_context",
-  "xml/sax/parser",
-  "xml/sax/push_parser",
-  "html/document",
-  "html/element_description",
-  "html/entity_lookup",
-  "html/sax/parser_context",
-  "xslt/stylesheet",
-].each do |file|
-  require "nokogiri/ffi/#{file}"
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/common_node.rb

@@ -1,38 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    module CommonNode # :nodoc:
-      def document
-        p = self[:doc]
-        p.null? ? nil : LibXML::XmlDocumentCast.new(p)
-      end
-
-      def ruby_node_pointer
-        self[:_private]
-      end
-
-      def ruby_node_pointer=(value)
-        self[:_private] = value
-      end
-
-      def ruby_node
-        Nokogiri::WeakBucket.get_object(self)
-      end
-
-      def ruby_node= object
-        Nokogiri::WeakBucket.set_object(self, object)
-      end
-
-      def keep_reference_from_document! # equivalent to NOKOGIRI_ROOT_NODE
-        doc = self.document
-        raise "no document to add reference to" unless doc
-        LibXML.xmlXPathNodeSetAdd(doc.unlinked_nodes, self)
-      end
-
-      def keep_reference_from!(document) # equivalent to NOKOGIRI_ROOT_NSDEF
-        raise "no document to add reference to" unless document
-        LibXML.xmlXPathNodeSetAdd(document.unlinked_nodes, self)
-      end
-    end
-  end
-end
-

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_elem_desc.rb

@@ -1,24 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    class HtmlElemDesc < FFI::Struct # :nodoc:
-
-      layout(
-        :name,          :string,
-        :startTag,      :char,
-        :endTag,        :char,
-        :saveEndTag,    :char,
-        :empty,         :char,
-        :depr,          :char,
-        :dtd,           :char,
-        :isinline,      :char,
-        :desc,          :string,
-        :subelts,       :pointer,
-        :defaultsubelt, :string,
-        :attrs_opt,     :pointer,
-        :attrs_depr,    :pointer,
-        :attrs_req,     :pointer
-        )
-        
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/html_entity_desc.rb

@@ -1,13 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    class HtmlEntityDesc < FFI::Struct # :nodoc:
-
-      layout(
-        :value, :int,
-        :name,  :char,
-        :desc,  :char
-        )
-
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_alloc.rb

@@ -1,16 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    #
-    #  this class only exists to create a xmlFree() finalizer
-    #
-    class XmlAlloc < FFI::ManagedStruct # :nodoc:
-
-      layout :dummy, :int, 0 # to avoid @layout warnings
-
-      def self.release ptr
-        LibXML.xmlFree(ptr)
-      end
-
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attr.rb

@@ -1,20 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    class XmlAttr < FFI::Struct # :nodoc:
-
-      layout(
-        :_private,      :pointer,
-        :type,          :int,
-        :name,          :string,
-        :children,      :pointer,
-        :last,          :pointer,
-        :parent,        :pointer,
-        :next,          :pointer,
-        :prev,          :pointer,
-        :doc,           :pointer,
-        :ns,            :pointer
-        )
-
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_attribute.rb

@@ -1,27 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    class XmlAttribute < FFI::Struct # :nodoc:
-      include CommonNode
-
-      layout(
-        :_private,      :long,
-        :type,          :int,
-        :name,          :string,
-        :children,      :pointer,
-        :last,          :pointer,
-        :parent,        :pointer,
-        :next,          :pointer,
-        :prev,          :pointer,
-        :doc,           :pointer,
-
-        :nexth,         :pointer,
-        :atype,         :int,
-        :def,           :int,
-        :default_value, :string,
-        :tree,          :pointer,
-        :prefix,        :string,
-        :elem,          :string
-        )
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_buffer.rb

@@ -1,16 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    class XmlBuffer < FFI::ManagedStruct # :nodoc:
-
-      layout(
-        :content,       :string,
-        :use,           :int,
-        :size,          :int
-        )
-
-      def self.release ptr
-        LibXML.xmlBufferFree(ptr)
-      end
-    end
-  end
-end

data/search_biomodel/ruby/1.8/gems/nokogiri-1.4.6/lib/nokogiri/ffi/structs/xml_char_encoding_handler.rb

@@ -1,11 +0,0 @@
-module Nokogiri
-  module LibXML # :nodoc:
-    class XmlCharEncodingHandler < FFI::Struct # :nodoc:
-      layout(
-        :name,          :string,
-        :input,         :pointer,
-        :output,        :pointer
-        )
-    end
-  end
-end