rumale 0.23.3 → 0.24.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/LICENSE.txt +5 -1
- data/README.md +3 -288
- data/lib/rumale/version.rb +1 -1
- data/lib/rumale.rb +20 -131
- metadata +252 -150
- data/CHANGELOG.md +0 -643
- data/CODE_OF_CONDUCT.md +0 -74
- data/ext/rumale/extconf.rb +0 -37
- data/ext/rumale/rumaleext.c +0 -545
- data/ext/rumale/rumaleext.h +0 -12
- data/lib/rumale/base/base_estimator.rb +0 -49
- data/lib/rumale/base/classifier.rb +0 -36
- data/lib/rumale/base/cluster_analyzer.rb +0 -31
- data/lib/rumale/base/evaluator.rb +0 -17
- data/lib/rumale/base/regressor.rb +0 -36
- data/lib/rumale/base/splitter.rb +0 -21
- data/lib/rumale/base/transformer.rb +0 -22
- data/lib/rumale/clustering/dbscan.rb +0 -123
- data/lib/rumale/clustering/gaussian_mixture.rb +0 -218
- data/lib/rumale/clustering/hdbscan.rb +0 -291
- data/lib/rumale/clustering/k_means.rb +0 -122
- data/lib/rumale/clustering/k_medoids.rb +0 -141
- data/lib/rumale/clustering/mini_batch_k_means.rb +0 -139
- data/lib/rumale/clustering/power_iteration.rb +0 -127
- data/lib/rumale/clustering/single_linkage.rb +0 -203
- data/lib/rumale/clustering/snn.rb +0 -76
- data/lib/rumale/clustering/spectral_clustering.rb +0 -115
- data/lib/rumale/dataset.rb +0 -246
- data/lib/rumale/decomposition/factor_analysis.rb +0 -150
- data/lib/rumale/decomposition/fast_ica.rb +0 -188
- data/lib/rumale/decomposition/nmf.rb +0 -124
- data/lib/rumale/decomposition/pca.rb +0 -159
- data/lib/rumale/ensemble/ada_boost_classifier.rb +0 -179
- data/lib/rumale/ensemble/ada_boost_regressor.rb +0 -160
- data/lib/rumale/ensemble/extra_trees_classifier.rb +0 -139
- data/lib/rumale/ensemble/extra_trees_regressor.rb +0 -125
- data/lib/rumale/ensemble/gradient_boosting_classifier.rb +0 -306
- data/lib/rumale/ensemble/gradient_boosting_regressor.rb +0 -237
- data/lib/rumale/ensemble/random_forest_classifier.rb +0 -189
- data/lib/rumale/ensemble/random_forest_regressor.rb +0 -153
- data/lib/rumale/ensemble/stacking_classifier.rb +0 -215
- data/lib/rumale/ensemble/stacking_regressor.rb +0 -163
- data/lib/rumale/ensemble/voting_classifier.rb +0 -126
- data/lib/rumale/ensemble/voting_regressor.rb +0 -82
- data/lib/rumale/evaluation_measure/accuracy.rb +0 -29
- data/lib/rumale/evaluation_measure/adjusted_rand_score.rb +0 -74
- data/lib/rumale/evaluation_measure/calinski_harabasz_score.rb +0 -56
- data/lib/rumale/evaluation_measure/davies_bouldin_score.rb +0 -53
- data/lib/rumale/evaluation_measure/explained_variance_score.rb +0 -39
- data/lib/rumale/evaluation_measure/f_score.rb +0 -50
- data/lib/rumale/evaluation_measure/function.rb +0 -147
- data/lib/rumale/evaluation_measure/log_loss.rb +0 -45
- data/lib/rumale/evaluation_measure/mean_absolute_error.rb +0 -29
- data/lib/rumale/evaluation_measure/mean_squared_error.rb +0 -29
- data/lib/rumale/evaluation_measure/mean_squared_log_error.rb +0 -29
- data/lib/rumale/evaluation_measure/median_absolute_error.rb +0 -30
- data/lib/rumale/evaluation_measure/mutual_information.rb +0 -49
- data/lib/rumale/evaluation_measure/normalized_mutual_information.rb +0 -53
- data/lib/rumale/evaluation_measure/precision.rb +0 -50
- data/lib/rumale/evaluation_measure/precision_recall.rb +0 -96
- data/lib/rumale/evaluation_measure/purity.rb +0 -40
- data/lib/rumale/evaluation_measure/r2_score.rb +0 -43
- data/lib/rumale/evaluation_measure/recall.rb +0 -50
- data/lib/rumale/evaluation_measure/roc_auc.rb +0 -130
- data/lib/rumale/evaluation_measure/silhouette_score.rb +0 -82
- data/lib/rumale/feature_extraction/feature_hasher.rb +0 -110
- data/lib/rumale/feature_extraction/hash_vectorizer.rb +0 -155
- data/lib/rumale/feature_extraction/tfidf_transformer.rb +0 -113
- data/lib/rumale/kernel_approximation/nystroem.rb +0 -126
- data/lib/rumale/kernel_approximation/rbf.rb +0 -102
- data/lib/rumale/kernel_machine/kernel_fda.rb +0 -120
- data/lib/rumale/kernel_machine/kernel_pca.rb +0 -97
- data/lib/rumale/kernel_machine/kernel_ridge.rb +0 -82
- data/lib/rumale/kernel_machine/kernel_ridge_classifier.rb +0 -92
- data/lib/rumale/kernel_machine/kernel_svc.rb +0 -193
- data/lib/rumale/linear_model/base_sgd.rb +0 -285
- data/lib/rumale/linear_model/elastic_net.rb +0 -119
- data/lib/rumale/linear_model/lasso.rb +0 -115
- data/lib/rumale/linear_model/linear_regression.rb +0 -201
- data/lib/rumale/linear_model/logistic_regression.rb +0 -275
- data/lib/rumale/linear_model/nnls.rb +0 -137
- data/lib/rumale/linear_model/ridge.rb +0 -209
- data/lib/rumale/linear_model/svc.rb +0 -213
- data/lib/rumale/linear_model/svr.rb +0 -132
- data/lib/rumale/manifold/mds.rb +0 -155
- data/lib/rumale/manifold/tsne.rb +0 -222
- data/lib/rumale/metric_learning/fisher_discriminant_analysis.rb +0 -113
- data/lib/rumale/metric_learning/mlkr.rb +0 -161
- data/lib/rumale/metric_learning/neighbourhood_component_analysis.rb +0 -167
- data/lib/rumale/model_selection/cross_validation.rb +0 -125
- data/lib/rumale/model_selection/function.rb +0 -42
- data/lib/rumale/model_selection/grid_search_cv.rb +0 -225
- data/lib/rumale/model_selection/group_k_fold.rb +0 -93
- data/lib/rumale/model_selection/group_shuffle_split.rb +0 -115
- data/lib/rumale/model_selection/k_fold.rb +0 -81
- data/lib/rumale/model_selection/shuffle_split.rb +0 -90
- data/lib/rumale/model_selection/stratified_k_fold.rb +0 -99
- data/lib/rumale/model_selection/stratified_shuffle_split.rb +0 -118
- data/lib/rumale/model_selection/time_series_split.rb +0 -91
- data/lib/rumale/multiclass/one_vs_rest_classifier.rb +0 -83
- data/lib/rumale/naive_bayes/base_naive_bayes.rb +0 -47
- data/lib/rumale/naive_bayes/bernoulli_nb.rb +0 -82
- data/lib/rumale/naive_bayes/complement_nb.rb +0 -85
- data/lib/rumale/naive_bayes/gaussian_nb.rb +0 -69
- data/lib/rumale/naive_bayes/multinomial_nb.rb +0 -74
- data/lib/rumale/naive_bayes/negation_nb.rb +0 -71
- data/lib/rumale/nearest_neighbors/k_neighbors_classifier.rb +0 -133
- data/lib/rumale/nearest_neighbors/k_neighbors_regressor.rb +0 -108
- data/lib/rumale/nearest_neighbors/vp_tree.rb +0 -132
- data/lib/rumale/neural_network/adam.rb +0 -56
- data/lib/rumale/neural_network/base_mlp.rb +0 -248
- data/lib/rumale/neural_network/mlp_classifier.rb +0 -120
- data/lib/rumale/neural_network/mlp_regressor.rb +0 -90
- data/lib/rumale/pairwise_metric.rb +0 -152
- data/lib/rumale/pipeline/feature_union.rb +0 -69
- data/lib/rumale/pipeline/pipeline.rb +0 -175
- data/lib/rumale/preprocessing/bin_discretizer.rb +0 -93
- data/lib/rumale/preprocessing/binarizer.rb +0 -60
- data/lib/rumale/preprocessing/kernel_calculator.rb +0 -92
- data/lib/rumale/preprocessing/l1_normalizer.rb +0 -62
- data/lib/rumale/preprocessing/l2_normalizer.rb +0 -63
- data/lib/rumale/preprocessing/label_binarizer.rb +0 -89
- data/lib/rumale/preprocessing/label_encoder.rb +0 -79
- data/lib/rumale/preprocessing/max_abs_scaler.rb +0 -61
- data/lib/rumale/preprocessing/max_normalizer.rb +0 -62
- data/lib/rumale/preprocessing/min_max_scaler.rb +0 -76
- data/lib/rumale/preprocessing/one_hot_encoder.rb +0 -100
- data/lib/rumale/preprocessing/ordinal_encoder.rb +0 -109
- data/lib/rumale/preprocessing/polynomial_features.rb +0 -109
- data/lib/rumale/preprocessing/standard_scaler.rb +0 -71
- data/lib/rumale/probabilistic_output.rb +0 -114
- data/lib/rumale/tree/base_decision_tree.rb +0 -150
- data/lib/rumale/tree/decision_tree_classifier.rb +0 -150
- data/lib/rumale/tree/decision_tree_regressor.rb +0 -116
- data/lib/rumale/tree/extra_tree_classifier.rb +0 -107
- data/lib/rumale/tree/extra_tree_regressor.rb +0 -94
- data/lib/rumale/tree/gradient_tree_regressor.rb +0 -202
- data/lib/rumale/tree/node.rb +0 -39
- data/lib/rumale/utils.rb +0 -42
- data/lib/rumale/validation.rb +0 -128
- data/lib/rumale/values.rb +0 -13
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# frozen_string_literal: true
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require 'rumale/utils'
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require 'rumale/base/base_estimator'
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require 'rumale/base/transformer'
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module Rumale
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module Decomposition
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# NMF is a class that implements Non-negative Matrix Factorization.
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#
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# @example
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# decomposer = Rumale::Decomposition::NMF.new(n_components: 2)
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# representaion = decomposer.fit_transform(samples)
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#
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# *Reference*
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# - Xu, W., Liu, X., and Gong, Y., "Document Clustering Based On Non-negative Matrix Factorization," Proc. SIGIR' 03 , pp. 267--273, 2003.
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class NMF
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include Base::BaseEstimator
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include Base::Transformer
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# Returns the factorization matrix.
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# @return [Numo::DFloat] (shape: [n_components, n_features])
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attr_reader :components
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# Return the random generator.
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# @return [Random]
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attr_reader :rng
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# Create a new transformer with NMF.
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#
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# @param n_components [Integer] The number of components.
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# @param max_iter [Integer] The maximum number of iterations.
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# @param tol [Float] The tolerance of termination criterion.
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# @param eps [Float] A small value close to zero to avoid zero division error.
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# @param random_seed [Integer] The seed value using to initialize the random generator.
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def initialize(n_components: 2, max_iter: 500, tol: 1.0e-4, eps: 1.0e-16, random_seed: nil)
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check_params_numeric(n_components: n_components, max_iter: max_iter, tol: tol, eps: eps)
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check_params_numeric_or_nil(random_seed: random_seed)
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check_params_positive(n_components: n_components, max_iter: max_iter, tol: tol, eps: eps)
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@params = {}
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@params[:n_components] = n_components
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@params[:max_iter] = max_iter
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@params[:tol] = tol
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@params[:eps] = eps
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@params[:random_seed] = random_seed
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@params[:random_seed] ||= srand
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@components = nil
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@rng = Random.new(@params[:random_seed])
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end
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# Fit the model with given training data.
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#
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# @overload fit(x) -> NMF
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#
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# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The training data to be used for fitting the model.
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# @return [NMF] The learned transformer itself.
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def fit(x, _y = nil)
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x = check_convert_sample_array(x)
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partial_fit(x)
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self
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end
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# Fit the model with training data, and then transform them with the learned model.
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#
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# @overload fit_transform(x) -> Numo::DFloat
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#
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# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The training data to be used for fitting the model.
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# @return [Numo::DFloat] (shape: [n_samples, n_components]) The transformed data
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def fit_transform(x, _y = nil)
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x = check_convert_sample_array(x)
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partial_fit(x)
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end
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# Transform the given data with the learned model.
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#
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# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The data to be transformed with the learned model.
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# @return [Numo::DFloat] (shape: [n_samples, n_components]) The transformed data.
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def transform(x)
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x = check_convert_sample_array(x)
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partial_fit(x, update_comps: false)
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end
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# Inverse transform the given transformed data with the learned model.
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#
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# @param z [Numo::DFloat] (shape: [n_samples, n_components]) The data to be restored into original space with the learned model.
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# @return [Numo::DFloat] (shape: [n_samples, n_featuress]) The restored data.
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def inverse_transform(z)
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z = check_convert_sample_array(z)
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z.dot(@components)
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end
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private
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def partial_fit(x, update_comps: true)
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# initialize some variables.
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n_samples, n_features = x.shape
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scale = Math.sqrt(x.mean / @params[:n_components])
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sub_rng = @rng.dup
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@components = Rumale::Utils.rand_uniform([@params[:n_components], n_features], sub_rng) * scale if update_comps
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coefficients = Rumale::Utils.rand_uniform([n_samples, @params[:n_components]], sub_rng) * scale
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# optimization.
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@params[:max_iter].times do
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# update
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deno = coefficients.transpose.dot(coefficients).dot(@components) + @params[:eps]
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@components *= (nume / deno)
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end
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nume = x.dot(@components.transpose)
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deno = coefficients.dot(@components).dot(@components.transpose) + @params[:eps]
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coefficients *= (nume / deno)
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norm = Numo::NMath.sqrt((@components**2).sum(1)) + @params[:eps]
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@components /= norm.expand_dims(1) if update_comps
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coefficients *= norm
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err = ((x - coefficients.dot(@components))**2).sum(1).mean
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break if err < @params[:tol]
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end
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coefficients
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end
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end
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end
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# frozen_string_literal: true
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require 'rumale/base/base_estimator'
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require 'rumale/base/transformer'
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module Rumale
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# Module for matrix decomposition algorithms.
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module Decomposition
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# PCA is a class that implements Principal Component Analysis.
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# @example
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# decomposer = Rumale::Decomposition::PCA.new(n_components: 2, solver: 'fpt')
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# representaion = decomposer.fit_transform(samples)
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#
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# # If Numo::Linalg is installed, you can specify 'evd' for the solver option.
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# require 'numo/linalg/autoloader'
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# decomposer = Rumale::Decomposition::PCA.new(n_components: 2, solver: 'evd')
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# representaion = decomposer.fit_transform(samples)
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#
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# # If Numo::Linalg is loaded and the solver option is not given,
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# decomposer = Rumale::Decomposition::PCA.new(n_components: 2)
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# representaion = decomposer.fit_transform(samples)
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#
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# *Reference*
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# - Sharma, A., and Paliwal, K K., "Fast principal component analysis using fixed-point algorithm," Pattern Recognition Letters, 28, pp. 1151--1155, 2007.
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class PCA
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include Base::BaseEstimator
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# Returns the principal components.
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# @return [Numo::DFloat] (shape: [n_components, n_features])
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attr_reader :components
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# Create a new transformer with PCA.
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#
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# @param n_components [Integer] The number of principal components.
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# @param solver [String] The algorithm for the optimization ('auto', 'fpt' or 'evd').
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# 'auto' chooses the 'evd' solver if Numo::Linalg is loaded. Otherwise, it chooses the 'fpt' solver.
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# 'evd' performs eigen value decomposition of the covariance matrix of samples.
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# @param max_iter [Integer] The maximum number of iterations. If solver = 'evd', this parameter is ignored.
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# @param tol [Float] The tolerance of termination criterion. If solver = 'evd', this parameter is ignored.
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def initialize(n_components: 2, solver: 'auto', max_iter: 100, tol: 1.0e-4, random_seed: nil)
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check_params_numeric(n_components: n_components, max_iter: max_iter, tol: tol)
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def orthogonalize(pcvec)
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unless @components.nil?
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@@ -1,179 +0,0 @@
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# frozen_string_literal: true
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require 'rumale/values'
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require 'rumale/utils'
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require 'rumale/base/base_estimator'
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require 'rumale/base/classifier'
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require 'rumale/tree/decision_tree_classifier'
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module Rumale
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module Ensemble
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# AdaBoostClassifier is a class that implements AdaBoost (SAMME.R) for classification.
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# This class uses decision tree for a weak learner.
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#
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# @example
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# estimator =
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# Rumale::Ensemble::AdaBoostClassifier.new(
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# n_estimators: 10, criterion: 'gini', max_depth: 3, max_leaf_nodes: 10, min_samples_leaf: 5, random_seed: 1)
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# estimator.fit(training_samples, traininig_labels)
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# results = estimator.predict(testing_samples)
|
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|
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#
|
|
21
|
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# *Reference*
|
|
22
|
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# - Zhu, J., Rosset, S., Zou, H., and Hashie, T., "Multi-class AdaBoost," Technical Report No. 430, Department of Statistics, University of Michigan, 2005.
|
|
23
|
-
class AdaBoostClassifier
|
|
24
|
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include Base::BaseEstimator
|
|
25
|
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include Base::Classifier
|
|
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|
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|
|
27
|
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# Return the set of estimators.
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|
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# @return [Array<DecisionTreeClassifier>]
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attr_reader :estimators
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|
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# Return the class labels.
|
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|
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# @return [Numo::Int32] (size: n_classes)
|
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|
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attr_reader :classes
|
|
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|
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|
|
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|
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# Return the importance for each feature.
|
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# @return [Numo::DFloat] (size: n_features)
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|
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attr_reader :feature_importances
|
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|
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|
|
39
|
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# Return the random generator for random selection of feature index.
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|
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# @return [Random]
|
|
41
|
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attr_reader :rng
|
|
42
|
-
|
|
43
|
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# Create a new classifier with AdaBoost.
|
|
44
|
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#
|
|
45
|
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# @param n_estimators [Integer] The numeber of decision trees for contructing AdaBoost classifier.
|
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46
|
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# @param criterion [String] The function to evalue spliting point. Supported criteria are 'gini' and 'entropy'.
|
|
47
|
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# @param max_depth [Integer] The maximum depth of the tree.
|
|
48
|
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# If nil is given, decision tree grows without concern for depth.
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|
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|
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# @param max_leaf_nodes [Integer] The maximum number of leaves on decision tree.
|
|
50
|
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# If nil is given, number of leaves is not limited.
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|
51
|
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# @param min_samples_leaf [Integer] The minimum number of samples at a leaf node.
|
|
52
|
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# @param max_features [Integer] The number of features to consider when searching optimal split point.
|
|
53
|
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# If nil is given, split process considers all features.
|
|
54
|
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# @param random_seed [Integer] The seed value using to initialize the random generator.
|
|
55
|
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# It is used to randomly determine the order of features when deciding spliting point.
|
|
56
|
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def initialize(n_estimators: 50,
|
|
57
|
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criterion: 'gini', max_depth: nil, max_leaf_nodes: nil, min_samples_leaf: 1,
|
|
58
|
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max_features: nil, random_seed: nil)
|
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59
|
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check_params_numeric_or_nil(max_depth: max_depth, max_leaf_nodes: max_leaf_nodes,
|
|
60
|
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max_features: max_features, random_seed: random_seed)
|
|
61
|
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check_params_numeric(n_estimators: n_estimators, min_samples_leaf: min_samples_leaf)
|
|
62
|
-
check_params_string(criterion: criterion)
|
|
63
|
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check_params_positive(n_estimators: n_estimators, max_depth: max_depth,
|
|
64
|
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max_leaf_nodes: max_leaf_nodes, min_samples_leaf: min_samples_leaf,
|
|
65
|
-
max_features: max_features)
|
|
66
|
-
@params = {}
|
|
67
|
-
@params[:n_estimators] = n_estimators
|
|
68
|
-
@params[:criterion] = criterion
|
|
69
|
-
@params[:max_depth] = max_depth
|
|
70
|
-
@params[:max_leaf_nodes] = max_leaf_nodes
|
|
71
|
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@params[:min_samples_leaf] = min_samples_leaf
|
|
72
|
-
@params[:max_features] = max_features
|
|
73
|
-
@params[:random_seed] = random_seed
|
|
74
|
-
@params[:random_seed] ||= srand
|
|
75
|
-
@estimators = nil
|
|
76
|
-
@classes = nil
|
|
77
|
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@feature_importances = nil
|
|
78
|
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@rng = Random.new(@params[:random_seed])
|
|
79
|
-
end
|
|
80
|
-
|
|
81
|
-
# Fit the model with given training data.
|
|
82
|
-
#
|
|
83
|
-
# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The training data to be used for fitting the model.
|
|
84
|
-
# @param y [Numo::Int32] (shape: [n_samples]) The labels to be used for fitting the model.
|
|
85
|
-
# @return [AdaBoostClassifier] The learned classifier itself.
|
|
86
|
-
def fit(x, y) # rubocop:disable Metrics/AbcSize
|
|
87
|
-
x = check_convert_sample_array(x)
|
|
88
|
-
y = check_convert_label_array(y)
|
|
89
|
-
check_sample_label_size(x, y)
|
|
90
|
-
## Initialize some variables.
|
|
91
|
-
n_samples, n_features = x.shape
|
|
92
|
-
@estimators = []
|
|
93
|
-
@feature_importances = Numo::DFloat.zeros(n_features)
|
|
94
|
-
@params[:max_features] = n_features unless @params[:max_features].is_a?(Integer)
|
|
95
|
-
@params[:max_features] = [[1, @params[:max_features]].max, n_features].min
|
|
96
|
-
@classes = Numo::Int32.asarray(y.to_a.uniq.sort)
|
|
97
|
-
n_classes = @classes.shape[0]
|
|
98
|
-
sub_rng = @rng.dup
|
|
99
|
-
## Boosting.
|
|
100
|
-
classes_arr = @classes.to_a
|
|
101
|
-
y_codes = Numo::DFloat.zeros(n_samples, n_classes) - 1.fdiv(n_classes - 1)
|
|
102
|
-
n_samples.times { |n| y_codes[n, classes_arr.index(y[n])] = 1.0 }
|
|
103
|
-
observation_weights = Numo::DFloat.zeros(n_samples) + 1.fdiv(n_samples)
|
|
104
|
-
@params[:n_estimators].times do |_t|
|
|
105
|
-
# Fit classfier.
|
|
106
|
-
ids = Rumale::Utils.choice_ids(n_samples, observation_weights, sub_rng)
|
|
107
|
-
break if y[ids].to_a.uniq.size != n_classes
|
|
108
|
-
|
|
109
|
-
tree = Tree::DecisionTreeClassifier.new(
|
|
110
|
-
criterion: @params[:criterion], max_depth: @params[:max_depth],
|
|
111
|
-
max_leaf_nodes: @params[:max_leaf_nodes], min_samples_leaf: @params[:min_samples_leaf],
|
|
112
|
-
max_features: @params[:max_features], random_seed: sub_rng.rand(Rumale::Values.int_max)
|
|
113
|
-
)
|
|
114
|
-
tree.fit(x[ids, true], y[ids])
|
|
115
|
-
# Calculate estimator error.
|
|
116
|
-
proba = tree.predict_proba(x).clip(1.0e-15, nil)
|
|
117
|
-
p = Numo::Int32.asarray(Array.new(n_samples) { |n| @classes[proba[n, true].max_index] })
|
|
118
|
-
inds = p.ne(y)
|
|
119
|
-
error = (observation_weights * inds).sum / observation_weights.sum
|
|
120
|
-
# Store model.
|
|
121
|
-
@estimators.push(tree)
|
|
122
|
-
@feature_importances += tree.feature_importances
|
|
123
|
-
break if error.zero?
|
|
124
|
-
|
|
125
|
-
# Update observation weights.
|
|
126
|
-
log_proba = Numo::NMath.log(proba)
|
|
127
|
-
observation_weights *= Numo::NMath.exp(-1.0 * (n_classes - 1).fdiv(n_classes) * (y_codes * log_proba).sum(1))
|
|
128
|
-
observation_weights = observation_weights.clip(1.0e-15, nil)
|
|
129
|
-
sum_observation_weights = observation_weights.sum
|
|
130
|
-
break if sum_observation_weights.zero?
|
|
131
|
-
|
|
132
|
-
observation_weights /= sum_observation_weights
|
|
133
|
-
end
|
|
134
|
-
@feature_importances /= @feature_importances.sum
|
|
135
|
-
self
|
|
136
|
-
end
|
|
137
|
-
|
|
138
|
-
# Calculate confidence scores for samples.
|
|
139
|
-
#
|
|
140
|
-
# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The samples to compute the scores.
|
|
141
|
-
# @return [Numo::DFloat] (shape: [n_samples, n_classes]) Confidence score per sample.
|
|
142
|
-
def decision_function(x)
|
|
143
|
-
x = check_convert_sample_array(x)
|
|
144
|
-
n_samples, = x.shape
|
|
145
|
-
n_classes = @classes.size
|
|
146
|
-
sum_probs = Numo::DFloat.zeros(n_samples, n_classes)
|
|
147
|
-
@estimators.each do |tree|
|
|
148
|
-
log_proba = Numo::NMath.log(tree.predict_proba(x).clip(1.0e-15, nil))
|
|
149
|
-
sum_probs += (n_classes - 1) * (log_proba - 1.fdiv(n_classes) * Numo::DFloat[log_proba.sum(1)].transpose)
|
|
150
|
-
end
|
|
151
|
-
sum_probs /= @estimators.size
|
|
152
|
-
end
|
|
153
|
-
|
|
154
|
-
# Predict class labels for samples.
|
|
155
|
-
#
|
|
156
|
-
# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The samples to predict the labels.
|
|
157
|
-
# @return [Numo::Int32] (shape: [n_samples]) Predicted class label per sample.
|
|
158
|
-
def predict(x)
|
|
159
|
-
x = check_convert_sample_array(x)
|
|
160
|
-
n_samples, = x.shape
|
|
161
|
-
probs = decision_function(x)
|
|
162
|
-
Numo::Int32.asarray(Array.new(n_samples) { |n| @classes[probs[n, true].max_index] })
|
|
163
|
-
end
|
|
164
|
-
|
|
165
|
-
# Predict probability for samples.
|
|
166
|
-
#
|
|
167
|
-
# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The samples to predict the probailities.
|
|
168
|
-
# @return [Numo::DFloat] (shape: [n_samples, n_classes]) Predicted probability of each class per sample.
|
|
169
|
-
def predict_proba(x)
|
|
170
|
-
x = check_convert_sample_array(x)
|
|
171
|
-
n_classes = @classes.size
|
|
172
|
-
probs = Numo::NMath.exp(1.fdiv(n_classes - 1) * decision_function(x))
|
|
173
|
-
sum_probs = probs.sum(1)
|
|
174
|
-
probs /= Numo::DFloat[sum_probs].transpose
|
|
175
|
-
probs
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end
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end
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end
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@@ -1,160 +0,0 @@
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# frozen_string_literal: true
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require 'rumale/values'
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require 'rumale/base/base_estimator'
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require 'rumale/base/regressor'
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require 'rumale/tree/decision_tree_regressor'
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module Rumale
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module Ensemble
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# AdaBoostRegressor is a class that implements random forest for regression.
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# This class uses decision tree for a weak learner.
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#
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# @example
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# estimator =
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# Rumale::Ensemble::AdaBoostRegressor.new(
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# n_estimators: 10, criterion: 'mse', max_depth: 3, max_leaf_nodes: 10, min_samples_leaf: 5, random_seed: 1)
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# estimator.fit(training_samples, traininig_values)
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# results = estimator.predict(testing_samples)
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#
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# *Reference*
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# - Shrestha, D. L., and Solomatine, D. P., "Experiments with AdaBoost.RT, an Improved Boosting Scheme for Regression," Neural Computation 18 (7), pp. 1678--1710, 2006.
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class AdaBoostRegressor
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include Base::BaseEstimator
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include Base::Regressor
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# Return the set of estimators.
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# @return [Array<DecisionTreeRegressor>]
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attr_reader :estimators
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# Return the weight for each weak learner.
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# @return [Numo::DFloat] (size: n_estimates)
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attr_reader :estimator_weights
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# Return the importance for each feature.
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# @return [Numo::DFloat] (size: n_features)
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attr_reader :feature_importances
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# Return the random generator for random selection of feature index.
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# @return [Random]
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attr_reader :rng
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# Create a new regressor with random forest.
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#
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# @param n_estimators [Integer] The numeber of decision trees for contructing AdaBoost regressor.
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# @param threshold [Float] The threshold for delimiting correct and incorrect predictions. That is constrained to [0, 1]
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# @param exponent [Float] The exponent for the weight of each weak learner.
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# @param criterion [String] The function to evalue spliting point. Supported criteria are 'gini' and 'entropy'.
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# @param max_depth [Integer] The maximum depth of the tree.
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# If nil is given, decision tree grows without concern for depth.
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# @param max_leaf_nodes [Integer] The maximum number of leaves on decision tree.
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# If nil is given, number of leaves is not limited.
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# @param min_samples_leaf [Integer] The minimum number of samples at a leaf node.
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# @param max_features [Integer] The number of features to consider when searching optimal split point.
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# If nil is given, split process considers all features.
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# @param random_seed [Integer] The seed value using to initialize the random generator.
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# It is used to randomly determine the order of features when deciding spliting point.
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def initialize(n_estimators: 10, threshold: 0.2, exponent: 1.0,
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criterion: 'mse', max_depth: nil, max_leaf_nodes: nil, min_samples_leaf: 1,
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max_features: nil, random_seed: nil)
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check_params_numeric_or_nil(max_depth: max_depth, max_leaf_nodes: max_leaf_nodes,
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max_features: max_features, random_seed: random_seed)
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check_params_numeric(n_estimators: n_estimators, min_samples_leaf: min_samples_leaf,
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threshold: threshold, exponent: exponent)
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check_params_string(criterion: criterion)
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check_params_positive(n_estimators: n_estimators, threshold: threshold, exponent: exponent,
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max_depth: max_depth,
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max_leaf_nodes: max_leaf_nodes, min_samples_leaf: min_samples_leaf,
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max_features: max_features)
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@params = {}
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@params[:n_estimators] = n_estimators
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@params[:threshold] = threshold
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@params[:exponent] = exponent
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@params[:criterion] = criterion
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@params[:max_depth] = max_depth
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@params[:max_leaf_nodes] = max_leaf_nodes
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@params[:min_samples_leaf] = min_samples_leaf
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@params[:max_features] = max_features
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@params[:random_seed] = random_seed
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@params[:random_seed] ||= srand
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@estimators = nil
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@feature_importances = nil
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@rng = Random.new(@params[:random_seed])
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end
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# Fit the model with given training data.
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#
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# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The training data to be used for fitting the model.
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# @param y [Numo::DFloat] (shape: [n_samples]) The target values to be used for fitting the model.
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# @return [AdaBoostRegressor] The learned regressor itself.
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def fit(x, y) # rubocop:disable Metrics/AbcSize
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x = check_convert_sample_array(x)
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y = check_convert_tvalue_array(y)
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check_sample_tvalue_size(x, y)
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# Check target values
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raise ArgumentError, 'Expect target value vector to be 1-D arrray' unless y.shape.size == 1
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# Initialize some variables.
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n_samples, n_features = x.shape
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@params[:max_features] = n_features unless @params[:max_features].is_a?(Integer)
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@params[:max_features] = [[1, @params[:max_features]].max, n_features].min
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observation_weights = Numo::DFloat.zeros(n_samples) + 1.fdiv(n_samples)
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@estimators = []
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@estimator_weights = []
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@feature_importances = Numo::DFloat.zeros(n_features)
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sub_rng = @rng.dup
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# Construct forest.
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@params[:n_estimators].times do |_t|
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# Fit weak learner.
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ids = Rumale::Utils.choice_ids(n_samples, observation_weights, sub_rng)
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tree = Tree::DecisionTreeRegressor.new(
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criterion: @params[:criterion], max_depth: @params[:max_depth],
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max_leaf_nodes: @params[:max_leaf_nodes], min_samples_leaf: @params[:min_samples_leaf],
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max_features: @params[:max_features], random_seed: sub_rng.rand(Rumale::Values.int_max)
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)
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tree.fit(x[ids, true], y[ids])
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p = tree.predict(x)
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# Calculate errors.
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abs_err = ((p - y) / y).abs
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err = observation_weights[abs_err.gt(@params[:threshold])].sum
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break if err <= 0.0
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# Calculate weight.
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beta = err**@params[:exponent]
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weight = Math.log(1.fdiv(beta))
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# Store model.
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@estimators.push(tree)
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@estimator_weights.push(weight)
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@feature_importances += weight * tree.feature_importances
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# Update observation weights.
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update = Numo::DFloat.ones(n_samples)
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update[abs_err.le(@params[:threshold])] = beta
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observation_weights *= update
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observation_weights = observation_weights.clip(1.0e-15, nil)
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sum_observation_weights = observation_weights.sum
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break if sum_observation_weights.zero?
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observation_weights /= sum_observation_weights
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end
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@estimator_weights = Numo::DFloat.asarray(@estimator_weights)
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@feature_importances /= @estimator_weights.sum
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self
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end
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# Predict values for samples.
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#
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# @param x [Numo::DFloat] (shape: [n_samples, n_features]) The samples to predict the values.
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# @return [Numo::DFloat] (shape: [n_samples, n_outputs]) Predicted value per sample.
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def predict(x)
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x = check_convert_sample_array(x)
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n_samples, = x.shape
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predictions = Numo::DFloat.zeros(n_samples)
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@estimators.size.times do |t|
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predictions += @estimator_weights[t] * @estimators[t].predict(x)
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end
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sum_weight = @estimator_weights.sum
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156
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predictions / sum_weight
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157
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end
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158
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end
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159
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end
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160
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end
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