rumale 0.23.3 → 0.24.0
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- checksums.yaml +4 -4
- data/LICENSE.txt +5 -1
- data/README.md +3 -288
- data/lib/rumale/version.rb +1 -1
- data/lib/rumale.rb +20 -131
- metadata +252 -150
- data/CHANGELOG.md +0 -643
- data/CODE_OF_CONDUCT.md +0 -74
- data/ext/rumale/extconf.rb +0 -37
- data/ext/rumale/rumaleext.c +0 -545
- data/ext/rumale/rumaleext.h +0 -12
- data/lib/rumale/base/base_estimator.rb +0 -49
- data/lib/rumale/base/classifier.rb +0 -36
- data/lib/rumale/base/cluster_analyzer.rb +0 -31
- data/lib/rumale/base/evaluator.rb +0 -17
- data/lib/rumale/base/regressor.rb +0 -36
- data/lib/rumale/base/splitter.rb +0 -21
- data/lib/rumale/base/transformer.rb +0 -22
- data/lib/rumale/clustering/dbscan.rb +0 -123
- data/lib/rumale/clustering/gaussian_mixture.rb +0 -218
- data/lib/rumale/clustering/hdbscan.rb +0 -291
- data/lib/rumale/clustering/k_means.rb +0 -122
- data/lib/rumale/clustering/k_medoids.rb +0 -141
- data/lib/rumale/clustering/mini_batch_k_means.rb +0 -139
- data/lib/rumale/clustering/power_iteration.rb +0 -127
- data/lib/rumale/clustering/single_linkage.rb +0 -203
- data/lib/rumale/clustering/snn.rb +0 -76
- data/lib/rumale/clustering/spectral_clustering.rb +0 -115
- data/lib/rumale/dataset.rb +0 -246
- data/lib/rumale/decomposition/factor_analysis.rb +0 -150
- data/lib/rumale/decomposition/fast_ica.rb +0 -188
- data/lib/rumale/decomposition/nmf.rb +0 -124
- data/lib/rumale/decomposition/pca.rb +0 -159
- data/lib/rumale/ensemble/ada_boost_classifier.rb +0 -179
- data/lib/rumale/ensemble/ada_boost_regressor.rb +0 -160
- data/lib/rumale/ensemble/extra_trees_classifier.rb +0 -139
- data/lib/rumale/ensemble/extra_trees_regressor.rb +0 -125
- data/lib/rumale/ensemble/gradient_boosting_classifier.rb +0 -306
- data/lib/rumale/ensemble/gradient_boosting_regressor.rb +0 -237
- data/lib/rumale/ensemble/random_forest_classifier.rb +0 -189
- data/lib/rumale/ensemble/random_forest_regressor.rb +0 -153
- data/lib/rumale/ensemble/stacking_classifier.rb +0 -215
- data/lib/rumale/ensemble/stacking_regressor.rb +0 -163
- data/lib/rumale/ensemble/voting_classifier.rb +0 -126
- data/lib/rumale/ensemble/voting_regressor.rb +0 -82
- data/lib/rumale/evaluation_measure/accuracy.rb +0 -29
- data/lib/rumale/evaluation_measure/adjusted_rand_score.rb +0 -74
- data/lib/rumale/evaluation_measure/calinski_harabasz_score.rb +0 -56
- data/lib/rumale/evaluation_measure/davies_bouldin_score.rb +0 -53
- data/lib/rumale/evaluation_measure/explained_variance_score.rb +0 -39
- data/lib/rumale/evaluation_measure/f_score.rb +0 -50
- data/lib/rumale/evaluation_measure/function.rb +0 -147
- data/lib/rumale/evaluation_measure/log_loss.rb +0 -45
- data/lib/rumale/evaluation_measure/mean_absolute_error.rb +0 -29
- data/lib/rumale/evaluation_measure/mean_squared_error.rb +0 -29
- data/lib/rumale/evaluation_measure/mean_squared_log_error.rb +0 -29
- data/lib/rumale/evaluation_measure/median_absolute_error.rb +0 -30
- data/lib/rumale/evaluation_measure/mutual_information.rb +0 -49
- data/lib/rumale/evaluation_measure/normalized_mutual_information.rb +0 -53
- data/lib/rumale/evaluation_measure/precision.rb +0 -50
- data/lib/rumale/evaluation_measure/precision_recall.rb +0 -96
- data/lib/rumale/evaluation_measure/purity.rb +0 -40
- data/lib/rumale/evaluation_measure/r2_score.rb +0 -43
- data/lib/rumale/evaluation_measure/recall.rb +0 -50
- data/lib/rumale/evaluation_measure/roc_auc.rb +0 -130
- data/lib/rumale/evaluation_measure/silhouette_score.rb +0 -82
- data/lib/rumale/feature_extraction/feature_hasher.rb +0 -110
- data/lib/rumale/feature_extraction/hash_vectorizer.rb +0 -155
- data/lib/rumale/feature_extraction/tfidf_transformer.rb +0 -113
- data/lib/rumale/kernel_approximation/nystroem.rb +0 -126
- data/lib/rumale/kernel_approximation/rbf.rb +0 -102
- data/lib/rumale/kernel_machine/kernel_fda.rb +0 -120
- data/lib/rumale/kernel_machine/kernel_pca.rb +0 -97
- data/lib/rumale/kernel_machine/kernel_ridge.rb +0 -82
- data/lib/rumale/kernel_machine/kernel_ridge_classifier.rb +0 -92
- data/lib/rumale/kernel_machine/kernel_svc.rb +0 -193
- data/lib/rumale/linear_model/base_sgd.rb +0 -285
- data/lib/rumale/linear_model/elastic_net.rb +0 -119
- data/lib/rumale/linear_model/lasso.rb +0 -115
- data/lib/rumale/linear_model/linear_regression.rb +0 -201
- data/lib/rumale/linear_model/logistic_regression.rb +0 -275
- data/lib/rumale/linear_model/nnls.rb +0 -137
- data/lib/rumale/linear_model/ridge.rb +0 -209
- data/lib/rumale/linear_model/svc.rb +0 -213
- data/lib/rumale/linear_model/svr.rb +0 -132
- data/lib/rumale/manifold/mds.rb +0 -155
- data/lib/rumale/manifold/tsne.rb +0 -222
- data/lib/rumale/metric_learning/fisher_discriminant_analysis.rb +0 -113
- data/lib/rumale/metric_learning/mlkr.rb +0 -161
- data/lib/rumale/metric_learning/neighbourhood_component_analysis.rb +0 -167
- data/lib/rumale/model_selection/cross_validation.rb +0 -125
- data/lib/rumale/model_selection/function.rb +0 -42
- data/lib/rumale/model_selection/grid_search_cv.rb +0 -225
- data/lib/rumale/model_selection/group_k_fold.rb +0 -93
- data/lib/rumale/model_selection/group_shuffle_split.rb +0 -115
- data/lib/rumale/model_selection/k_fold.rb +0 -81
- data/lib/rumale/model_selection/shuffle_split.rb +0 -90
- data/lib/rumale/model_selection/stratified_k_fold.rb +0 -99
- data/lib/rumale/model_selection/stratified_shuffle_split.rb +0 -118
- data/lib/rumale/model_selection/time_series_split.rb +0 -91
- data/lib/rumale/multiclass/one_vs_rest_classifier.rb +0 -83
- data/lib/rumale/naive_bayes/base_naive_bayes.rb +0 -47
- data/lib/rumale/naive_bayes/bernoulli_nb.rb +0 -82
- data/lib/rumale/naive_bayes/complement_nb.rb +0 -85
- data/lib/rumale/naive_bayes/gaussian_nb.rb +0 -69
- data/lib/rumale/naive_bayes/multinomial_nb.rb +0 -74
- data/lib/rumale/naive_bayes/negation_nb.rb +0 -71
- data/lib/rumale/nearest_neighbors/k_neighbors_classifier.rb +0 -133
- data/lib/rumale/nearest_neighbors/k_neighbors_regressor.rb +0 -108
- data/lib/rumale/nearest_neighbors/vp_tree.rb +0 -132
- data/lib/rumale/neural_network/adam.rb +0 -56
- data/lib/rumale/neural_network/base_mlp.rb +0 -248
- data/lib/rumale/neural_network/mlp_classifier.rb +0 -120
- data/lib/rumale/neural_network/mlp_regressor.rb +0 -90
- data/lib/rumale/pairwise_metric.rb +0 -152
- data/lib/rumale/pipeline/feature_union.rb +0 -69
- data/lib/rumale/pipeline/pipeline.rb +0 -175
- data/lib/rumale/preprocessing/bin_discretizer.rb +0 -93
- data/lib/rumale/preprocessing/binarizer.rb +0 -60
- data/lib/rumale/preprocessing/kernel_calculator.rb +0 -92
- data/lib/rumale/preprocessing/l1_normalizer.rb +0 -62
- data/lib/rumale/preprocessing/l2_normalizer.rb +0 -63
- data/lib/rumale/preprocessing/label_binarizer.rb +0 -89
- data/lib/rumale/preprocessing/label_encoder.rb +0 -79
- data/lib/rumale/preprocessing/max_abs_scaler.rb +0 -61
- data/lib/rumale/preprocessing/max_normalizer.rb +0 -62
- data/lib/rumale/preprocessing/min_max_scaler.rb +0 -76
- data/lib/rumale/preprocessing/one_hot_encoder.rb +0 -100
- data/lib/rumale/preprocessing/ordinal_encoder.rb +0 -109
- data/lib/rumale/preprocessing/polynomial_features.rb +0 -109
- data/lib/rumale/preprocessing/standard_scaler.rb +0 -71
- data/lib/rumale/probabilistic_output.rb +0 -114
- data/lib/rumale/tree/base_decision_tree.rb +0 -150
- data/lib/rumale/tree/decision_tree_classifier.rb +0 -150
- data/lib/rumale/tree/decision_tree_regressor.rb +0 -116
- data/lib/rumale/tree/extra_tree_classifier.rb +0 -107
- data/lib/rumale/tree/extra_tree_regressor.rb +0 -94
- data/lib/rumale/tree/gradient_tree_regressor.rb +0 -202
- data/lib/rumale/tree/node.rb +0 -39
- data/lib/rumale/utils.rb +0 -42
- data/lib/rumale/validation.rb +0 -128
- data/lib/rumale/values.rb +0 -13
data/lib/rumale/tree/node.rb
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# frozen_string_literal: true
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module Rumale
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module Tree
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# Node is a class that implements node used for construction of decision tree.
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# This class is used for internal data structures.
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class Node
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# @!visibility private
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attr_accessor :depth, :impurity, :n_samples, :probs, :leaf, :leaf_id, :left, :right, :feature_id, :threshold
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# Create a new node for decision tree.
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#
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# @param depth [Integer] The depth of the node in tree.
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# @param impurity [Float] The impurity of the node.
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# @param n_samples [Integer] The number of the samples in the node.
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# @param probs [Float] The probability of the node.
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# @param leaf [Boolean] The flag indicating whether the node is a leaf.
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# @param leaf_id [Integer] The leaf index of the node.
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# @param left [Node] The left node.
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# @param right [Node] The right node.
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# @param feature_id [Integer] The feature index used for evaluation.
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# @param threshold [Float] The threshold value of the feature for splitting the node.
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def initialize(depth: 0, impurity: 0.0, n_samples: 0, probs: 0.0,
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leaf: false, leaf_id: nil,
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left: nil, right: nil, feature_id: 0, threshold: 0.0)
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@depth = depth
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@impurity = impurity
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@n_samples = n_samples
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@probs = probs
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@leaf = leaf
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@leaf_id = leaf_id
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@left = left
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@right = right
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@feature_id = feature_id
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@threshold = threshold
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end
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end
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end
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end
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data/lib/rumale/utils.rb
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# frozen_string_literal: true
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module Rumale
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# @!visibility private
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module Utils
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module_function
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# @!visibility private
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def choice_ids(size, probs, rng = nil)
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rng ||= Random.new
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Array.new(size) do
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target = rng.rand
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chosen = 0
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probs.each_with_index do |p, idx|
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break (chosen = idx) if target <= p
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target -= p
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end
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chosen
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end
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end
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# @!visibility private
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def rand_uniform(shape, rng = nil)
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rng ||= Random.new
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if shape.is_a?(Array)
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rnd_vals = Array.new(shape.inject(:*)) { rng.rand }
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Numo::DFloat.asarray(rnd_vals).reshape(shape[0], shape[1])
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else
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Numo::DFloat.asarray(Array.new(shape) { rng.rand })
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end
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end
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# @!visibility private
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def rand_normal(shape, rng = nil, mu = 0.0, sigma = 1.0)
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rng ||= Random.new
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a = rand_uniform(shape, rng)
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b = rand_uniform(shape, rng)
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(Numo::NMath.sqrt(Numo::NMath.log(a) * -2.0) * Numo::NMath.sin(b * 2.0 * Math::PI)) * sigma + mu
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end
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end
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end
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data/lib/rumale/validation.rb
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# frozen_string_literal: true
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module Rumale
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# @!visibility private
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module Validation
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module_function
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# @!visibility private
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def check_convert_sample_array(x)
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x = Numo::DFloat.cast(x) unless x.is_a?(Numo::DFloat)
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raise ArgumentError, 'Expect sample matrix to be 2-D array' unless x.ndim == 2
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x
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end
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# @!visibility private
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def check_convert_label_array(y)
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y = Numo::Int32.cast(y) unless y.is_a?(Numo::Int32)
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raise ArgumentError, 'Expect label vector to be 1-D arrray' unless y.ndim == 1
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y
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end
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# @!visibility private
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def check_convert_tvalue_array(y)
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y = Numo::DFloat.cast(y) unless y.is_a?(Numo::DFloat)
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y
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end
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# @deprecated Use check_convert_sample_array instead of this method.
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# @!visibility private
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def check_sample_array(x)
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raise TypeError, 'Expect class of sample matrix to be Numo::DFloat' unless x.is_a?(Numo::DFloat)
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raise ArgumentError, 'Expect sample matrix to be 2-D array' unless x.ndim == 2
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nil
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end
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# @deprecated Use check_convert_label_array instead of this method.
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# @!visibility private
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def check_label_array(y)
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raise TypeError, 'Expect class of label vector to be Numo::Int32' unless y.is_a?(Numo::Int32)
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raise ArgumentError, 'Expect label vector to be 1-D arrray' unless y.ndim == 1
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nil
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end
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# @deprecated Use check_convert_tvalue_array instead of this method.
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# @!visibility private
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def check_tvalue_array(y)
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raise TypeError, 'Expect class of target value vector to be Numo::DFloat' unless y.is_a?(Numo::DFloat)
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nil
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end
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# @!visibility private
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def check_sample_label_size(x, y)
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raise ArgumentError, 'Expect to have the same number of samples for sample matrix and label vector' unless x.shape[0] == y.shape[0]
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nil
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end
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# @!visibility private
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def check_sample_tvalue_size(x, y)
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raise ArgumentError, 'Expect to have the same number of samples for sample matrix and target value vector' unless x.shape[0] == y.shape[0]
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nil
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_type(type, params = {})
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params.each { |k, v| raise TypeError, "Expect class of #{k} to be #{type}" unless v.is_a?(type) }
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nil
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_type_or_nil(type, params = {})
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params.each { |k, v| raise TypeError, "Expect class of #{k} to be #{type} or nil" unless v.is_a?(type) || v.is_a?(NilClass) }
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nil
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_numeric(params = {})
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check_params_type(Numeric, params)
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_numeric_or_nil(params = {})
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check_params_type_or_nil(Numeric, params)
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end
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# @deprecated Use check_params_numeric instead of this method.
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# @!visibility private
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def check_params_float(params = {})
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check_params_type(Float, params)
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end
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# @deprecated Use check_params_numeric instead of this method.
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# @!visibility private
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def check_params_integer(params = {})
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check_params_type(Integer, params)
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_string(params = {})
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check_params_type(String, params)
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_boolean(params = {})
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params.each { |k, v| raise TypeError, "Expect class of #{k} to be Boolean" unless v.is_a?(FalseClass) || v.is_a?(TrueClass) }
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nil
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end
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# TODO: Better to replace with RBS in the future.
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# @!visibility private
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def check_params_positive(params = {})
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params.compact.each { |k, v| raise ArgumentError, "Expect #{k} to be positive value" if v.negative? }
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nil
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end
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end
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end
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data/lib/rumale/values.rb
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