gphys 1.2.2.1 → 1.4.3
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- checksums.yaml +7 -0
- data/.gitignore +8 -17
- data/.rspec +2 -0
- data/.travis.yml +3 -0
- data/ChangeLog +5762 -753
- data/LICENSE.txt +30 -18
- data/Rakefile +1 -0
- data/bin/console +14 -0
- data/bin/gpcat +43 -2
- data/bin/gpcut +16 -0
- data/bin/gpvect +167 -15
- data/bin/gpview +254 -51
- data/bin/setup +7 -0
- data/dim_op.c +1220 -0
- data/doc/attribute.html +19 -0
- data/doc/attributenetcdf.html +15 -0
- data/doc/axis.html +387 -0
- data/doc/coordmapping.html +111 -0
- data/doc/coordtransform.html +36 -0
- data/doc/dclext.html +821 -0
- data/doc/derivative/gphys-derivative.html +100 -0
- data/doc/derivative/index.html +21 -0
- data/doc/derivative/index.rd +14 -0
- data/doc/derivative/math-doc/document.pdf +0 -0
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- data/doc/derivative/numru-derivative.html +158 -0
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- data/ext_init.c +1 -0
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- data/lib/numru/dclext.rb +718 -546
- data/lib/numru/derivative.rb +2 -0
- data/lib/numru/ganalysis.rb +38 -0
- data/lib/numru/ganalysis/beta_plane.rb +103 -0
- data/lib/numru/ganalysis/eof.rb +3 -2
- data/lib/numru/ganalysis/fitting.rb +559 -0
- data/lib/numru/ganalysis/histogram.rb +36 -19
- data/lib/numru/ganalysis/log_p.rb +130 -0
- data/lib/numru/ganalysis/met.rb +396 -2
- data/lib/numru/ganalysis/met_z.rb +300 -0
- data/lib/numru/ganalysis/planet.rb +17 -7
- data/lib/numru/ganalysis/qg.rb +685 -0
- data/lib/numru/ganalysis/sigma_coord.rb +90 -0
- data/lib/numru/gdir.rb +2 -1
- data/lib/numru/ggraph.rb +204 -60
- data/lib/numru/ggraph_on_merdional_section.rb +1 -1
- data/lib/numru/gphys.rb +6 -0
- data/lib/numru/gphys/assoccoords.rb +18 -3
- data/lib/numru/gphys/axis.rb +209 -8
- data/lib/numru/gphys/derivative.rb +11 -0
- data/lib/numru/gphys/gphys.rb +539 -48
- data/lib/numru/gphys/gphys_dim_op.rb +331 -0
- data/lib/numru/gphys/gphys_fft.rb +48 -2
- data/lib/numru/gphys/gphys_io.rb +241 -13
- data/lib/numru/gphys/gphys_netcdf_io.rb +77 -39
- data/lib/numru/gphys/gphys_nusdas_io.rb +3 -0
- data/lib/numru/gphys/grib.rb +133 -54
- data/lib/numru/gphys/grib_params.rb +26 -3
- data/lib/numru/gphys/grid.rb +75 -34
- data/lib/numru/gphys/interpolate.rb +24 -10
- data/lib/numru/gphys/mdstorage.rb +160 -0
- data/lib/numru/gphys/netcdf_convention.rb +4 -2
- data/lib/numru/gphys/subsetmapping.rb +0 -1
- data/lib/numru/gphys/unumeric.rb +50 -5
- data/lib/numru/gphys/varray.rb +15 -30
- data/lib/numru/gphys/varraycomposite.rb +107 -24
- data/lib/numru/gphys/varraynetcdf.rb +9 -3
- data/lib/numru/gphys/version.rb +5 -0
- data/sample/druby_cli1.rb +2 -0
- data/sample/druby_cli2.rb +0 -6
- data/sample/druby_serv2.rb +0 -13
- data/spec/gphys_spec.rb +11 -0
- data/spec/spec_helper.rb +2 -0
- data/test/test_assoccoords.rb +102 -0
- data/test/test_axis.rb +61 -0
- data/test/test_fitting.rb +116 -0
- data/test/test_gphys.rb +20 -0
- data/test/test_met_z.rb +96 -0
- data/test/test_sigma_coord.rb +50 -0
- data/{test → test_old}/eof_slp.rb +0 -0
- data/{test → test_old}/mltbit.dat +0 -0
- data/{test → test_old}/test_ep_flux.rb +0 -0
- data/{test → test_old}/test_multibitIO.rb +0 -0
- metadata +530 -191
- data/README.md +0 -29
- data/lib/gphys.rb +0 -2
- data/lib/numru/dclext_datetime_ax.rb +0 -220
- data/lib/version.rb +0 -3
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<h1><a name="label-0" id="label-0">module NumRu::GPhys::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative in derivative.rb" -->
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<h2><a name="label-1" id="label-1">Index</a></h2><!-- RDLabel: "Index" -->
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<ul>
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<li><a href="#label-2">module NumRu::GPhys::Derivative</a>
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<ul>
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<li><a href="#label-3">threepoint_O2nd_deriv</a>
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<ul>
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<li>First derivative (2nd Order difference use three point.)</li>
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</ul></li>
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<li><a href="#label-4">cderiv</a>
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<ul>
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<li>First derivative (using center difference method)</li>
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</ul></li>
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<li><!-- Reference, RDLabel "deriv2d" doesn't exist --><em class="label-not-found">deriv2d</em><!-- Reference end -->
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<ul>
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<li>2nd derivative</li>
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</ul></li>
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</ul></li>
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</ul>
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<h1><a name="label-2" id="label-2">module NumRu::GPhys::Derivative</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative" -->
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<p>Module functions of Derivative Operater for GPhys.</p>
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<dl>
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<dt><h4><a name="label-3" id="label-3"><code>threepoint_O2nd_deriv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>LINEAR_EXT</var>))</code></a></h4></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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<dd>
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<p>Derivate <code>z</code> respect to <code>dim</code> th dimension with 2nd Order difference.
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return an NArray which result of the difference <!-- Reference, RDLabel "z" doesn't exist --><em class="label-not-found">z</em><!-- Reference end --> divided difference
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<code>x</code> (in other wards, </p>
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<pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t)):
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now s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
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and _{i} represents the suffix of {i} th element in the ((<dim>)) th
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dimension of array. ).</pre>
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<p>ARGUMENTS</p>
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<ul>
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<li>z (NArray): a NArray which you want to derivative.</li>
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<li>x (NArray): a NArray represents the dimension which derivative respect
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to. z.rank must be 1.</li>
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<li>dim (Numeric): a Numeric represents the dimention which derivative
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respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but
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<!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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<li>bc (Numeric) : a Numeric which represent boundary condition.
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Supported conditions are:
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<ul>
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<li>LINEAR_EXT(=1) : default value</li>
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<li>CYCLIC_EXT(=2)</li>
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</ul></li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>O2nd_deriv_data (NArray):
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(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
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</ul></dd>
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<dt><h4><a name="label-4" id="label-4"><code>cderiv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>LINEAR_EXT</var>, <var>altcoord</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "cderiv" -->
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<dd>
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<p>Derivate <code>gp</code> respect to <code>dim</code> th or <code>dimname</code> dimension
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with center difference. return a GPhys which result of the difference
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<!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> divided difference axis.
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( in other wards, (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1}): now x is
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axis array which you wants to respects to, _{i} represents the suffix
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of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension of array. ).</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>gp (GPhys): a GPhys which you want to derivative.</li>
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<li>dim_or_dimname (Numeric or String): a Numeric or String represents
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the dimension which derivate respect to. you can give number count
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backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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<li>bc (Numeric) : a Numeric which represent boundary condition.
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Supported conditions are:
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<ul>
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<li>LINEAR_EXT(=1) : default value</li>
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<li>CYCLIC_EXT(=2)</li>
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</ul></li>
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<li>altcoord (nil or 1D VArray): if a VArray, it is used as the
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coordiante variable with which differentiation is made.
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-- conveneient to make deribative in a different cooridate scaling.
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(e.g., differenciate in radian, while the coordinate is in degrees)</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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<dt><h4><a name="label-5" id="label-5"><code>deriv2nd(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>LINEAR_EXT</var>, <var>altcoord</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "deriv2nd" -->
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<dd>
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<p>2nd Derivate <code>gp</code> respect to <code>dim</code> th or <code>dimname</code> dimension
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covering non-uniform grids. Based on:</p>
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<pre>( (z_{i+1}-z_{i})/(x_{i+1}-x_{i}) - (z_{i}-z_{i-1})/(x_{i}-x_{i-1}) )
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/ ((x_{i+1}-x_{i-1})/2)</pre>
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<p>See <a href="#label-4">cderiv</a> for usage.</p></dd>
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<h1><a name="label:0" id="label:0">Reference manuals of the Derivative library</a></h1><!-- RDLabel: "Reference manuals of the Derivative library" -->
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<ul>
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<li><a href="numru-derivative.html">module NumRu::Derivative</a> :
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Module functions of Derivative Operater for NArray.</li>
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<li><a href="gphys-derivative.html">module NumRu::GPhys::Derivative</a> :
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Module functions of Derivative Operater for GPhys.</li>
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<li><a href="math-doc/document/index.html">description of mathmatical definition</a>
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Description of mathmatical definition about Derivative.</li>
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=begin
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=Reference manuals of the Derivative library
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* ((<module NumRu::Derivative|URL:numru-derivative.html>)) :
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Module functions of Derivative Operater for NArray.
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* ((<module NumRu::GPhys::Derivative|URL:gphys-derivative.html>)) :
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Module functions of Derivative Operater for GPhys.
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* ((<description of mathmatical definition|URL:math-doc/document/index.html>))
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\begin{document}
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\section{�����ֳֳʻҤ������ٺ�ʬ}
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�ܥɥ�����ȤǤ�, NumRu::Derivative ���������� threepoints\_O2nd\_deriv ���Ѥ���
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�����ֳֳʻҤ������ٺ�ʬ�ˤĤ��ƤޤȤ��. ���κ�ʬ�϶�ü�������ֳ֤ǤϤʤ��ǡ�����
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�Ф��������٤κ�ʬ��Ϳ�����ΤǤ���.
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��, �ؿ�$f(x)$��, ���� $x_n (x_0, x_1, ..., x_{i}, ..., x_{n})$ ���Υ��������.
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%
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\begin{align}
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f_i &\equiv f(x_i)\\
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t &\equiv (x_{i+1} - x_{i})\\
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s &\equiv (x_{i} - x_{i-1})
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\end{align}
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%
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������, $s$��$t$�Ϥۤ�Ʊ�������������ͤǤ���������ꤷ�Ƶ�����ʤ��.
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������, $f(x)$��Ƴʻ�����˵�ˤƥƥ��顼Ÿ������.
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%
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\begin{align}
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f(x_{i+1}) - f(x_{i}) &= tf'(x_i) + \frac{t^2}{2}f''(x_i) + O(t^3)\\
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f(x_{i-1}) - f(x_{i}) &= -sf'(x_i) + \frac{s^2}{2}f''(x_i) + O(s^3)
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\end{align}
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%
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������, $f'(x_i), f''(x_i)$�Ϥ��줾��$x_i$�ˤ�����$f$��$x$�˴ؤ���쳬���������ʬ��, $O(t^3)$��$t^3$�Υ����������ͤ�ɽ��. ξ������$f''$�ι��õ�뤿���, $s^2\times$(1.4) - $t^2\times$(1.5) ��������,
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\begin{align}
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s^2f_{i+1} + (t^2 -s^2)f_i - t^2f_{i-1} &= (s^2 + st^2)f'(x_i) + s^2O(t^3) + t^2O(s^3)
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\end{align}
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%
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�Ȥʤ�. �弰���ѷ�����
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\begin{align}
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\frac{s^2f_{i+1} + (t^2 -s^2)f_i - t^2f_{i-1}}{st(s + t)}
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&= f'(x_i) + \frac{O(s^2t^3) + O(t^2s^3)}{st(s + t)}\\
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&= O(t^2).
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%
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������, 2�����ٺ�ʬ�θ�����
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f'(x_i) &= \frac{s^2f_{i+1} + (t^2 -s^2)f_i - t^2f_{i-1}}{st(s + t)}
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