gphys 1.2.2.1 → 1.4.3

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  372. data/lib/numru/gphys/gphys_netcdf_io.rb +77 -39
  373. data/lib/numru/gphys/gphys_nusdas_io.rb +3 -0
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  376. data/lib/numru/gphys/grid.rb +75 -34
  377. data/lib/numru/gphys/interpolate.rb +24 -10
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  380. data/lib/numru/gphys/subsetmapping.rb +0 -1
  381. data/lib/numru/gphys/unumeric.rb +50 -5
  382. data/lib/numru/gphys/varray.rb +15 -30
  383. data/lib/numru/gphys/varraycomposite.rb +107 -24
  384. data/lib/numru/gphys/varraynetcdf.rb +9 -3
  385. data/lib/numru/gphys/version.rb +5 -0
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  389. data/spec/gphys_spec.rb +11 -0
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  401. metadata +530 -191
  402. data/README.md +0 -29
  403. data/lib/gphys.rb +0 -2
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+ <?xml version="1.0" ?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml">
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+ <head>
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+ <title>../lib/numru/gphys/netcdf_convention.rb</title>
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+ </head>
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+ <body>
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+ <h2><a name="label-0" id="label-0">INDEX</a></h2><!-- RDLabel: "INDEX" -->
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+ <ul>
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+ <li><a href="#label-1">module NumRu::NetCDF_Conventions</a></li>
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+ <li><a href="#label-6">module NumRu::NetCDF_Convention_Users_Guide</a>
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+ <ul>
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+ <li><a href="#label-15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a></li>
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+ <li><a href="#label-18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a></li>
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+ </ul></li>
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+ <li><a href="#label-20">module NumRu::NetCDF_Convention_Wind_Profiler</a></li>
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+ </ul>
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+ <h1><a name="label-1" id="label-1">module NumRu::NetCDF_Conventions</a></h1><!-- RDLabel: "module NumRu::NetCDF_Conventions" -->
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+ <p>NetCDF_Conventions is the general handler of NetCDF conventions for the
22
+ GPhys library.</p>
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+ <h2><a name="label-2" id="label-2">Module Functions</a></h2><!-- RDLabel: "Module Functions" -->
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+ <dl>
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+ <dt><h4><a name="label-3" id="label-3"><code>find( <var>netcdf</var> )</code></a></h4></dt><!-- RDLabel: "find" -->
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+ <dd>
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+ <p>Figures out what NetCDF convention a netcdf file is following.</p>
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+ <p>ARGUMENTS</p>
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+ <ul>
30
+ <li><var>netcdf</var> (NetCDF): the file</li>
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+ </ul>
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+ <p>RETURN VALUE</p>
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+ <ul>
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+ <li>a Module (NumRu::NetCDF_Convention_Users_Guide etc.)</li>
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+ </ul>
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+ <p>REMARK</p>
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+ <ul>
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+ <li>The convention is figured out from the 'Conventions' global attribute.
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+ You can instead fix the convention by using <a href="#label-4">fix_to</a>.</li>
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+ </ul></dd>
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+ <dt><h4><a name="label-4" id="label-4"><code>fix_to( <var>convention</var> )</code></a></h4></dt><!-- RDLabel: "fix_to" -->
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+ <dd>
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+ <p>Fix the convention to be returned by <a href="#label-3">find</a> regardless the value
44
+ of the 'Conventions' attribute.</p>
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+ <p>ARGUMENTS</p>
46
+ <ul>
47
+ <li><var>convention</var> (Module): NumRu::NetCDF_Convention_Users_Guide etc.</li>
48
+ </ul>
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+ <p>RETURN VALUE</p>
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+ <ul>
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+ <li>convention</li>
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+ </ul></dd>
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+ <dt><h4><a name="label-5" id="label-5"><code>add_history(<var>netcdf</var>, <var>str</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "add_history" -->
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+ <dd>
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+ <p>Adds a line to the 'history' global convention of <var>netcdf</var>.
56
+ The line consists of date, time, user name, and <var>str</var>
57
+ if present (e.g., '2004-03-02 17:52:25 JST horinout&gt; '+str).</p>
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+ <p>ARGUMENTS</p>
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+ <ul>
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+ <li><var>netcdf</var> (NetCDF): the file in which the history is updated</li>
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+ <li><var>str</var> (nil or String): if present, added to the end of the line.</li>
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+ </ul></dd>
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+ </dl>
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+ <h1><a name="label-6" id="label-6">module NumRu::NetCDF_Convention_Users_Guide</a></h1><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide" -->
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+ <p>The NetCDF Users Guide Convention
66
+ (http://www.unidata.ucar.edu/packages/netcdf/docs.html).</p>
67
+ <h2><a name="label-7" id="label-7">Constants</a></h2><!-- RDLabel: "Constants" -->
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+ <dl>
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+ <dt><h4><a name="label-8" id="label-8"><code>Attribute_Mixin</code></a></h4></dt><!-- RDLabel: "Attribute_Mixin" -->
70
+ </dl>
71
+ <p>See below: <a href="#label-15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a>.</p>
72
+ <dl>
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+ <dt><h4><a name="label-9" id="label-9"><code>VArray_Mixin</code></a></h4></dt><!-- RDLabel: "VArray_Mixin" -->
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+ </dl>
75
+ <p>See below: <a href="#label-18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a>.</p>
76
+ <h2><a name="label-10" id="label-10">Module Functions</a></h2><!-- RDLabel: "Module Functions" -->
77
+ <dl>
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+ <dt><h4><a name="label-11" id="label-11"><code>to_s</code></a></h4></dt><!-- RDLabel: "to_s" -->
79
+ <dd>
80
+ Returns a string to be used as representing the convention.
81
+ The Users Guide Convention does not have one, so a string
82
+ was tentatively assigned by Horinouchi.</dd>
83
+ <dt><h4><a name="label-12" id="label-12"><code>coord_var_names(<var>ncvar</var>)</code></a></h4></dt><!-- RDLabel: "coord_var_names" -->
84
+ <dd>
85
+ <p>Returns the names of coordinate variables for all the dimensions
86
+ of <var>ncvar</var>.</p>
87
+ <p>ARGUMENTS</p>
88
+ <ul>
89
+ <li><var>ncvar</var> (NetCDFVar)</li>
90
+ </ul>
91
+ <p>RETURN VALUE</p>
92
+ <ul>
93
+ <li>Array of strings, whose length is the rank of <var>ncvar</var>.</li>
94
+ </ul></dd>
95
+ <dt><h4><a name="label-13" id="label-13"><code>cell_bounds?(<var>coord_var</var>)</code></a></h4></dt><!-- RDLabel: "cell_bounds?" -->
96
+ <dd>
97
+ Document to be written. (returns false&amp;nil in this convention.)
98
+ Might be reorganized in future when the gtool4 convention is supported.</dd>
99
+ <dt><h4><a name="label-14" id="label-14"><code>cell_center?(<var>coord_var</var>)</code></a></h4></dt><!-- RDLabel: "cell_center?" -->
100
+ <dd>
101
+ Document to be written. (returns false&amp;nil in this convention.)
102
+ Might be reorganized in future when the gtool4 convention is supported.</dd>
103
+ </dl>
104
+ <p>--------------------------------------------------</p>
105
+ <h2><a name="label-15" id="label-15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a></h2><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin" -->
106
+ <p>The module to be mixed in NumRu::AttributeNetCDF.</p>
107
+ <h3><a name="label-16" id="label-16">Instance Methods</a></h3><!-- RDLabel: "Instance Methods" -->
108
+ <p>Methods below will become sigular methods of NumRu::AttributeNetCDF.</p>
109
+ <dl>
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+ <dt><h4><a name="label-17" id="label-17"><code>copy(<var>to</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "copy" -->
111
+ <dd>
112
+ Same as super (the one overridden by this method),
113
+ but edits some standard attributes if to is nil (copy onto memory)):
114
+ <ul>
115
+ <li>scale_factor, add_offset: removed, since data copying includes
116
+ "unpaking" by interpreting them</li>
117
+ <li>valid_*, missing_value: unpacked if packed.</li>
118
+ <li>_FillValue, FORTRAN_format, C_format: eliminated</li>
119
+ </ul></dd>
120
+ </dl>
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+ <p>---------------------------------------------------</p>
122
+ <h2><a name="label-18" id="label-18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a></h2><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin" -->
123
+ <p>The module to be mixed in NumRu::VArrayNetCDF.</p>
124
+ <h3><a name="label-19" id="label-19">Instance Methods</a></h3><!-- RDLabel: "Instance Methods" -->
125
+ <p>Currently none, meaning is that no modification is made
126
+ in VArrayNetCDF.</p>
127
+ <p>---------------------------------------------------------------------</p>
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+ <h1><a name="label-20" id="label-20">module NumRu::NetCDF_Convention_Wind_Profiler</a></h1><!-- RDLabel: "module NumRu::NetCDF_Convention_Wind_Profiler" -->
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+ <p>The Wind Profiler convention
130
+ (http://www.kurasc.kyoto-u.ac.jp/radar-group/wind_profiler_conventions/).</p>
131
+ <p>Inherits NetCDF_Convention_Users_Guide and makes appropriate redefinitions.
132
+ See <a href="#label-6">module NumRu::NetCDF_Convention_Users_Guide</a> for the description
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+ of constants and module functions.</p>
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+
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+ </body>
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+ </html>
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+ <?xml version="1.0" ?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ <html xmlns="http://www.w3.org/1999/xhtml">
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+ <head>
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+ <title>../lib/numru/gphys/unumeric.rb</title>
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+ </head>
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+ <body>
10
+ <h1><a name="label-0" id="label-0">class NumRu::UNumeric</a></h1><!-- RDLabel: "class NumRu::UNumeric" -->
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+ <p>Class of Numeric with Units.</p>
12
+ <p>Dependent on
13
+ <a href="http://ruby.gfd-dennou.org/products/numru=units">NumRu::Units</a>
14
+ and Rational, a standard library.</p>
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+ <h2><a name="label-1" id="label-1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
16
+ <dl>
17
+ <dt><h4><a name="label-2" id="label-2"><code>new(<var>val</var>, <var>uni</var>)</code></a></h4></dt><!-- RDLabel: "new" -->
18
+ <dd>
19
+ <p>Constractor.</p>
20
+ <p>ARGUMENTS</p>
21
+ <ul>
22
+ <li><var>val</var> (Numeric)</li>
23
+ <li><var>units</var> (NumRu::Units or String): if string, internally converted to
24
+ a NumRu::Units</li>
25
+ </ul></dd>
26
+ <dt><h4><a name="label-3" id="label-3"><code>[val, <var>uni</var>]</code></a></h4></dt><!-- RDLabel: "[val, uni]" -->
27
+ <dd>
28
+ Same as new</dd>
29
+ <dt><h4><a name="label-4" id="label-4"><code>from_date(<var>date</var>, <var>units</var>)</code></a></h4></dt><!-- RDLabel: "from_date" -->
30
+ <dd>
31
+ <p>Convert a DateTime (or Date) to a UNUmeric</p>
32
+ <p>ARGUMENTS</p>
33
+ <ul>
34
+ <li>date (Date or DateTime)</li>
35
+ <li>units (Units or String) : units of the UNumeric to be created</li>
36
+ </ul></dd>
37
+ </dl>
38
+ <h2><a name="label-5" id="label-5">Methods</a></h2><!-- RDLabel: "Methods" -->
39
+ <dl>
40
+ <dt><h4><a name="label-6" id="label-6"><code>val</code></a></h4></dt><!-- RDLabel: "val" -->
41
+ <dd>
42
+ RETURN VALUE
43
+ <ul>
44
+ <li>the value (Numeric)</li>
45
+ </ul></dd>
46
+ <dt><h4><a name="label-7" id="label-7"><code>units</code></a></h4></dt><!-- RDLabel: "units" -->
47
+ <dd>
48
+ RETURN VALUE
49
+ <ul>
50
+ <li>the units (NumRu::Units)</li>
51
+ </ul></dd>
52
+ <dt><h4><a name="label-8" id="label-8"><code>inspect</code></a></h4></dt><!-- RDLabel: "inspect" -->
53
+ <dd>
54
+ RETURN VALUE
55
+ <ul>
56
+ <li>a String (e.g., '1 m')</li>
57
+ </ul></dd>
58
+ <dt><h4><a name="label-9" id="label-9"><code>to_s</code></a></h4></dt><!-- RDLabel: "to_s" -->
59
+ <dd>
60
+ aliasesed to <a href="#label-8">inspect</a>.</dd>
61
+ <dt><h4><a name="label-10" id="label-10"><code>to_f</code></a></h4></dt><!-- RDLabel: "to_f" -->
62
+ <dd>
63
+ RETURN VALUE
64
+ <ul>
65
+ <li>val.to_f</li>
66
+ </ul></dd>
67
+ <dt><h4><a name="label-11" id="label-11"><code>to_i</code></a></h4></dt><!-- RDLabel: "to_i" -->
68
+ <dd>
69
+ RETURN VALUE
70
+ <ul>
71
+ <li>val.to_i</li>
72
+ </ul></dd>
73
+ <dt><h4><a name="label-12" id="label-12"><code>convert(<var>to_units</var>)</code></a></h4></dt><!-- RDLabel: "convert" -->
74
+ <dd>
75
+ <p>Convert to <var>to_units</var>.</p>
76
+ <p>RETURN VALUE</p>
77
+ <ul>
78
+ <li>a UNumeric</li>
79
+ </ul>
80
+ <p>EXCEPTION</p>
81
+ <ul>
82
+ <li>when the current units is incompatible with to_units.</li>
83
+ </ul></dd>
84
+ <dt><h4><a name="label-13" id="label-13"><code>convert2</code></a></h4></dt><!-- RDLabel: "convert2" -->
85
+ <dd>
86
+ <p>Same as <a href="#label-12">convert</a>, but returns <var>self</var> if the units are
87
+ incompatible (Warned).</p>
88
+ <p>EXCEPTION</p>
89
+ <ul>
90
+ <li>none</li>
91
+ </ul>
92
+ <p>WARING MADE</p>
93
+ <p>Warning is made to $stderr if the following
94
+ condition is satisfied.</p>
95
+ <ul>
96
+ <li>the units of <var>self</var> and <var>to_units</var> are incompatible.</li>
97
+ </ul></dd>
98
+ <dt><h4><a name="label-14" id="label-14"><code>coerce(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "coerce" -->
99
+ <dd>
100
+ As you know. Can handle Numeric, Array, NArray.
101
+ NOTE: VArray and GPhys know UNumeric.</dd>
102
+ <dt><h4><a name="label-15" id="label-15"><code>*(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "*" -->
103
+ <dd>
104
+ <p>Multiplication. Knows Numeric, UNumeric, VArray, and GPhys.
105
+ The units are multipled too. (if other is Numeric, it is assumed
106
+ to be non-dimension)</p>
107
+ <p>RETURN VALUE</p>
108
+ <ul>
109
+ <li>a UNumeric, VArray, or GPhys</li>
110
+ </ul></dd>
111
+ <dt><h4><a name="label-16" id="label-16"><code>/(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "/" -->
112
+ <dd>
113
+ Division. See <a href="#label-15">*</a>.</dd>
114
+ <dt><h4><a name="label-17" id="label-17"><code>+(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "+" -->
115
+ <dd>
116
+ <p>Addition. Knows Numeric, UNumeric, VArray, and GPhys.
117
+ The return value will have the units of <var>self</var>.</p>
118
+ <p>SPECIAL REMARK!</p>
119
+ <p>If <var>other</var> has units within a factor and/or offset
120
+ of difference, It is CONVERTED before addition (by using <a href="#label-13">convert2</a>)!</p>
121
+ <p>RETURN VALUE</p>
122
+ <ul>
123
+ <li>a UNumeric, VArray, or GPhys</li>
124
+ </ul>
125
+ <p>WARING MADE </p>
126
+ <p>Warning is made to $stderr if the following
127
+ condition is satisfied.</p>
128
+ <ul>
129
+ <li>the units of <var>self</var> and <var>to_units</var> are incompatible.</li>
130
+ <li><var>other</var> is Numeric.</li>
131
+ </ul></dd>
132
+ <dt><h4><a name="label-18" id="label-18"><code>-(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "-" -->
133
+ <dd>
134
+ Subtraction. See <a href="#label-17">+</a>.</dd>
135
+ <dt><h4><a name="label-19" id="label-19"><code>**(<var>num</var>)</code></a></h4></dt><!-- RDLabel: "**" -->
136
+ <dd>
137
+ Power.</dd>
138
+ <dt><h4><a name="label-20" id="label-20"><code>abs</code></a></h4></dt><!-- RDLabel: "abs" -->
139
+ <dd>
140
+ Absolute value. Other math functions are also avialable as instance
141
+ methods.</dd>
142
+ <dt><h4><a name="label-21" id="label-21"><code>to_datetime(<var>eps_sec</var>=<var>0</var>.<var>0</var>)</code></a></h4></dt><!-- RDLabel: "to_datetime" -->
143
+ <dd>
144
+ <p>Convert a time UNumeric into a DateTime</p>
145
+ <p>ARGUMENTS</p>
146
+ <ul>
147
+ <li>eps_sec (Float) : Magic epsilon to prevent the round-off of
148
+ DateTime [seconds]. Recommended value is 0.1.</li>
149
+ </ul>
150
+ <p>RETURN VALUE</p>
151
+ <ul>
152
+ <li>a DateTime </li>
153
+ </ul>
154
+ <p>EXCEPTION</p>
155
+ <ul>
156
+ <li>raised if self does not have a time unit with a since field</li>
157
+ </ul></dd>
158
+ <dt><h4><a name="label-22" id="label-22"><code>strftime(<var>fmt</var>)</code></a></h4></dt><!-- RDLabel: "strftime" -->
159
+ <dd>
160
+ <p>Text expression of the date and time of a time UNumeric.
161
+ Implemented as</p>
162
+ <pre>self.to_datetime(0.1).strftime(fmt)</pre>
163
+ <p>ARGUMENTS</p>
164
+ <ul>
165
+ <li><p>fmt (Sting) : the format. Try</p>
166
+ <pre>% man 3 strftime</pre>
167
+ <p>to find how to write it.</p></li>
168
+ </ul>
169
+ <p>RETURN VALUE</p>
170
+ <ul>
171
+ <li>a String</li>
172
+ </ul></dd>
173
+ </dl>
174
+
175
+ </body>
176
+ </html>
@@ -0,0 +1,69 @@
1
+ #!/bin/csh
2
+
3
+ set sources = ( \
4
+ ../lib/numru/gphys/attribute.rb \
5
+ ../lib/numru/gphys/attributenetcdf.rb \
6
+ ../lib/numru/gphys/axis.rb \
7
+ ../lib/numru/gphys/coordmapping.rb \
8
+ ../lib/numru/gphys/coordtransform.rb \
9
+ ### ../lib/numru/gphys/derivative.rb \
10
+ ### ../lib/numru/gphys/ep_flux.rb \
11
+ ../lib/numru/gphys/gphys.rb \
12
+ ../lib/numru/gphys/gphys_fft.rb \
13
+ ../lib/numru/gphys/gphys_grads_io.rb \
14
+ ../lib/numru/gphys/gphys_grib_io.rb \
15
+ ../lib/numru/gphys/gphys_io.rb \
16
+ ../lib/numru/gphys/gphys_io_common.rb \
17
+ ../lib/numru/gphys/gphys_netcdf_io.rb \
18
+ ../lib/numru/gphys/grads_gridded.rb \
19
+ ../lib/numru/gphys/grib.rb \
20
+ # ../lib/numru/gphys/grib_params.rb \
21
+ ../lib/numru/gphys/grid.rb \
22
+ ../lib/numru/gphys/netcdf_convention.rb \
23
+ # ../lib/numru/gphys/subsetmapping.rb \
24
+ ../lib/numru/gphys/unumeric.rb \
25
+ ../lib/numru/gphys/varray.rb \
26
+ ../lib/numru/gphys/varraycomposite.rb \
27
+ # ../lib/numru/gphys/varraygrads.rb \
28
+ # ../lib/numru/gphys/varraygrib.rb \
29
+ # ../lib/numru/gphys/varraynetcdf.rb \
30
+ ### ../lib/numru/derivative.rb \
31
+ ../lib/numru/ggraph.rb \
32
+ ../lib/numru/dclext.rb \
33
+ ../lib/numru/gdir.rb \
34
+ ### ../lib/numru/ggraph_on_merdional_section.rb \
35
+ ### ../lib/numru/gphys.rb \
36
+ ../bin/grads2nc_with_gphys \
37
+ ../bin/gdir_server \
38
+ ../bin/gpcat \
39
+ ../bin/gpcut \
40
+ ../bin/gplist \
41
+ ../bin/gpmath \
42
+ ../bin/gpmaxmin \
43
+ ../bin/gpprint \
44
+ ../bin/gpview \
45
+ ../lib/numru/gdir_connect_ftp-like.rb \
46
+ index.rd \
47
+ )
48
+
49
+ foreach source ( $sources )
50
+ set html = `echo $source | sed -e 's/^.*\///' -e 's/\.rb$//' -e 's/\.rd$//' -e 's/$/.html/'`
51
+ if ( `test ! -f $html && echo 1` ) then
52
+ #< html file does not exist >
53
+ rd2 $source | sed -e 's/<dt>/<dt><h4>/' -e 's/<\/dt>/<\/h4><\/dt>/' | \
54
+ sed -e "s/<title>Untitled<\/title>/<title>`echo ${source} | sed 's/\//\\\//g'`<\/title>/" \
55
+ >! $html
56
+ # Here, the title replacement is for backward compatibility
57
+ echo '* Created ' $html
58
+ else if ( `/usr/bin/test $source -nt $html && echo 1` ) then
59
+ #< html file exists but the source file is newer >
60
+ rd2 $source | sed -e 's/<dt>/<dt><h4>/' -e 's/<\/dt>/<\/h4><\/dt>/' | \
61
+ sed -e "s/<title>Untitled<\/title>/<title>`echo ${source} | sed 's/\//\\\//g'`<\/title>/" \
62
+ >! tmp.html
63
+ # Here, the title replacement is for backward compatibility
64
+ diff tmp.html $html > /dev/null || \mv tmp.html $html \
65
+ && echo '* Updated ' $html
66
+ endif
67
+ end
68
+
69
+ #\rm -f tmp.html
@@ -0,0 +1,8 @@
1
+ #!/bin/bash
2
+
3
+ cd ganalysis
4
+
5
+ ganal_top=../../lib/numru/ganalysis.rb
6
+ ganal_libs="../../lib/numru/ganalysis/*.rb"
7
+
8
+ rdoc -e UTF-8 --title "NumRu::GAnalysis" --main=$ganal_top $ganal_top $ganal_libs
@@ -0,0 +1,299 @@
1
+ <?xml version="1.0" ?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+ <html xmlns="http://www.w3.org/1999/xhtml">
6
+ <head>
7
+ <title>../lib/numru/gphys/varray.rb</title>
8
+ </head>
9
+ <body>
10
+ <h1><a name="label-0" id="label-0">class NumRu::VArray</a></h1><!-- RDLabel: "class NumRu::VArray" -->
11
+ <p>VArray is a Virtual Array class, in which a multi-dimensional array data is
12
+ stored on memory (NArray, NArrayMiss) or in file (NetCDFVar etc).
13
+ The in-file data handling is left to subclasses such as VArrayNetCDF,
14
+ and this base class handles the following two cases:</p>
15
+ <ol>
16
+ <li>Data are stored on memory using NArray</li>
17
+ <li>Subset of another VArray (possibly a subclass such as VArrayNetCDF).</li>
18
+ </ol>
19
+ <p>Perhaps the latter case needs more explanation. Here, a VArray is defined
20
+ as a subset of another VArray, so the current VArray has only the link
21
+ and info on how the subset is mapped to the other VArray.</p>
22
+ <p>A VArray behaves just like a NArray, i.e., a numeric multi-dimensional
23
+ array. The important difference is that a VArray has a name and can
24
+ have "attributes" like a NetCDF variable. Therefore, VArray can perfectly
25
+ represent a NetCDFVar, which is realized by a sub-class VArrayNetCDF.</p>
26
+ <p>NOMENCLATURE</p>
27
+ <ul>
28
+ <li>value(s): The multi-dimensional numeric array contained in the VArray,
29
+ or its contents</li>
30
+ <li>attribute(s): A combination of name and data that describes a VArray.
31
+ Often realized by NumRu::Attribute class (or it is a NetCDFAttr in
32
+ VArrayNetCDF). The name must be a string, and the type of attribute
33
+ values is restricted to a few classes for compatibility with
34
+ NetCDFAttr (See NumRu::Attribute)</li>
35
+ </ul>
36
+ <h2><a name="label-1" id="label-1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
37
+ <dl>
38
+ <dt><h4><a name="label-2" id="label-2"><code>VArray.new(<var>narray</var>=<var>nil</var>, <var>attr</var>=<var>nil</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "VArray.new" -->
39
+ <dd>
40
+ <p>A constructor</p>
41
+ <p>ARGUMENTS</p>
42
+ <ul>
43
+ <li>narray (NArray or NArrayMiss; default:nil) The array to be held.
44
+ (nil is used to initialize a mapping to another VArray by a protected
45
+ method).</li>
46
+ <li>attr (NumRu::Attribute; default:nil) Attributes. If nil, an empty </li>
47
+ </ul>
48
+ <pre>attribute object is created and stored.</pre>
49
+ <ul>
50
+ <li>name (String; default nil) Name of the VArray. If nil, it is named "noname".</li>
51
+ </ul>
52
+ <p>RETURN VALUE</p>
53
+ <ul>
54
+ <li>a VArray</li>
55
+ </ul>
56
+ <p>EXAMPLE</p>
57
+ <pre>na = NArray.int(6,3).indgen!
58
+ va1 = VArray.new( na, nil, "test" )</pre></dd>
59
+ <dt><h4><a name="label-3" id="label-3"><code>VArray.new2(<var>ntype</var>, <var>shape</var>, <var>attr</var>=<var>nil</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "VArray.new2" -->
60
+ <dd>
61
+ <p>Another constructor. Uses parameters to initialize a NArray to hold.</p>
62
+ <p>ARGUMENTS</p>
63
+ <ul>
64
+ <li>ntype (String or NArray constants): Numeric type of the NArray to be
65
+ held (e.g., "sfloat", "float", NArray::SFLOAT, NArray::FLOAT)</li>
66
+ <li>shape (Array of Integers): shape of the NArray</li>
67
+ <li>attr (Attribute; default:nil) Attributes. If nil, an empty attribute
68
+ object is created and stored.</li>
69
+ <li>name (String; default nil) Name of the VArray.</li>
70
+ </ul>
71
+ <p>RETURN VALUE</p>
72
+ <ul>
73
+ <li>a VArray</li>
74
+ </ul></dd>
75
+ </dl>
76
+ <h2><a name="label-4" id="label-4">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
77
+ <dl>
78
+ <dt><h4><a name="label-5" id="label-5"><code>val</code></a></h4></dt><!-- RDLabel: "val" -->
79
+ <dd>
80
+ <p>Returns the values as a NArray (or NArrayMiss).</p>
81
+ <p>This is the case even when the VArray is a mapping to another. Also,
82
+ this method is to be redefined in subclasses to do the same thing.</p>
83
+ <p>ARGUMENTS -- none</p>
84
+ <p>RETURN VALUE</p>
85
+ <ul>
86
+ <li>a NArray (or NArrayMiss)</li>
87
+ </ul></dd>
88
+ <dt><h4><a name="label-6" id="label-6"><code>val=(<var>narray</var>)</code></a></h4></dt><!-- RDLabel: "val=" -->
89
+ <dd>
90
+ <p>Set values.</p>
91
+ <p>The whole values are set. If you want to set partly, use <a href="#label-9">[]=</a>.
92
+ In this method, values are read from narray and set into the internal
93
+ value holder. Thus, for exampled, the numeric type is not changed
94
+ regardress the numeric type of narray. Use <a href="#label-7">replace_val</a> to
95
+ replace entirely with narray.</p>
96
+ <p>ARGUMENTS</p>
97
+ <ul>
98
+ <li>narray (NArray or NArrayMiss or Numeric): If Numeric, the whole
99
+ values are set to be equal to it. If NArray (or NArrayMiss), its
100
+ shape must agree with the shape of the VArray.</li>
101
+ </ul></dd>
102
+ <dt><h4><a name="label-7" id="label-7"><code>replace_val(<var>narray</var>)</code></a></h4></dt><!-- RDLabel: "replace_val" -->
103
+ <dd>
104
+ <p>Replace the internal array data with the object narray.
105
+ Use <a href="#label-6">val=</a> if you want to copy the values of narray.</p>
106
+ <p>ARGUMENTS</p>
107
+ <ul>
108
+ <li>narray (NArray or NArrayMiss): as pxlained above.
109
+ Its shape must agree with the shape of the VArray (self).</li>
110
+ </ul>
111
+ <p>RETURN VALUE</p>
112
+ <ul>
113
+ <li>if (self.class == VArray), self;
114
+ otherwise (if self.class is a subclass of VArray), a new VArray.</li>
115
+ </ul></dd>
116
+ <dt><h4><a name="label-8" id="label-8"><code>[]</code></a></h4></dt><!-- RDLabel: "[]" -->
117
+ <dd>
118
+ Get a subset. Its usage is the same as NArray#[]</dd>
119
+ <dt><h4><a name="label-9" id="label-9"><code>[] = </code></a></h4></dt><!-- RDLabel: "[]=" -->
120
+ <dd>
121
+ Set a subset. Its usage is the same as NArray#[]=</dd>
122
+ <dt><h4><a name="label-10" id="label-10"><code>attr</code></a></h4></dt><!-- RDLabel: "attr" -->
123
+ <dd>
124
+ To be undefined.</dd>
125
+ <dt><h4><a name="label-11" id="label-11"><code>ntype</code></a></h4></dt><!-- RDLabel: "ntype" -->
126
+ <dd>
127
+ <p>Returns the numeric type.</p>
128
+ <p>ARGUMENTS -- none</p>
129
+ <p>RETURN VALUE</p>
130
+ <ul>
131
+ <li>a String ("byte", "sint", "int", "sfloat", "float", "scomplex"
132
+ "complex", or "obj"). It can be used in NArray.new to initialize
133
+ another NArray.</li>
134
+ </ul></dd>
135
+ <dt><h4><a name="label-12" id="label-12"><code>rank</code></a></h4></dt><!-- RDLabel: "rank" -->
136
+ <dd>
137
+ Returns the rank (number of dimensions)</dd>
138
+ <dt><h4><a name="label-13" id="label-13"><code>shape</code></a></h4></dt><!-- RDLabel: "shape" -->
139
+ <dd>
140
+ Returns the shape</dd>
141
+ <dt><h4><a name="label-14" id="label-14"><code>shape_current</code></a></h4></dt><!-- RDLabel: "shape_current" -->
142
+ <dd>
143
+ aliased to <a href="#label-13">shape</a>.</dd>
144
+ <dt><h4><a name="label-15" id="label-15"><code>length</code></a></h4></dt><!-- RDLabel: "length" -->
145
+ <dd>
146
+ Returns the length of the VArray</dd>
147
+ <dt><h4><a name="label-16" id="label-16"><code>typecode</code></a></h4></dt><!-- RDLabel: "typecode" -->
148
+ <dd>
149
+ Returns the NArray typecode</dd>
150
+ <dt><h4><a name="label-17" id="label-17"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
151
+ <dd>
152
+ <p>Returns the name</p>
153
+ <p>RETURN VALUE</p>
154
+ <ul>
155
+ <li>(String) name of the VArray</li>
156
+ </ul></dd>
157
+ <dt><h4><a name="label-18" id="label-18"><code>name=(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "name=" -->
158
+ <dd>
159
+ <p>Changes the name.</p>
160
+ <p>ARGUMENTS</p>
161
+ <ul>
162
+ <li>nm(String): the new name.</li>
163
+ </ul>
164
+ <p>RETURN VALUE</p>
165
+ <ul>
166
+ <li>nm</li>
167
+ </ul></dd>
168
+ <dt><h4><a name="label-19" id="label-19"><code>rename!(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "rename!" -->
169
+ <dd>
170
+ <p>Changes the name (Same as <a href="#label-18">name=</a>, but returns self)</p>
171
+ <p>ARGUMENTS</p>
172
+ <ul>
173
+ <li>nm(String): the new name.</li>
174
+ </ul>
175
+ <p>RETURN VALUE</p>
176
+ <ul>
177
+ <li>self</li>
178
+ </ul></dd>
179
+ <dt><h4><a name="label-20" id="label-20"><code>rename(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "rename" -->
180
+ <dd>
181
+ <p>Same as rename! but duplicate the VArray object and set its name.</p>
182
+ <p>This method may not be supported in sub-classes, since it is sometimes
183
+ problematic not to change the original.</p></dd>
184
+ <dt><h4><a name="label-21" id="label-21"><code>copy(<var>to</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "copy" -->
185
+ <dd>
186
+ <p>Copy a VArray. If to is nil, works as the deep cloning (duplication of the entire object).</p>
187
+ <p>Both the values and the attributes are copied.</p>
188
+ <p>ARGUMENTS</p>
189
+ <ul>
190
+ <li>to (VArray (possibly a subclass) or nil): The VArray to which the
191
+ copying is made.</li>
192
+ </ul></dd>
193
+ <dt><h4><a name="label-22" id="label-22"><code>reshape!( *<var>shape</var> )</code></a></h4></dt><!-- RDLabel: "reshape!" -->
194
+ <dd>
195
+ <p>Changes the shape without changing the total size. May not be available in subclasses.</p>
196
+ <p>ARGUMENTS</p>
197
+ <ul>
198
+ <li>shape (Array of Integer): new shape</li>
199
+ </ul>
200
+ <p>RETURN VALUE</p>
201
+ <ul>
202
+ <li>self</li>
203
+ </ul>
204
+ <p>EXAMPLE</p>
205
+ <pre>vary = VArray.new2( "float", [10,2])
206
+ vary.reshape!(5,4) # changes the vary
207
+ vary.copy.reshape!(2,2,5) # make a deep clone and change it
208
+ # This always works with a VArray subclass, since vary.copy
209
+ # makes a deep clone to VArray with NArray.</pre></dd>
210
+ <dt><h4><a name="label-23" id="label-23"><code>file</code></a></h4></dt><!-- RDLabel: "file" -->
211
+ <dd>
212
+ <p>Returns a file object if the data of the VArray is in a file, nil if it is on memory</p>
213
+ <p>ARGUMENTS</p>
214
+ <ul>
215
+ <li>none</li>
216
+ </ul>
217
+ <p>RETURN VALUE</p>
218
+ <ul>
219
+ <li>an object representing the file in which data are stored. Its class
220
+ depends on the file type. nil is returned if the data is not in a file.</li>
221
+ </ul></dd>
222
+ <dt><h4><a name="label-24" id="label-24"><code>transpose(*<var>dims</var>)</code></a></h4></dt><!-- RDLabel: "transpose" -->
223
+ <dd>
224
+ Transpose. Argument specification is as in NArray.</dd>
225
+ <dt><h4><a name="label-25" id="label-25"><code>reshape(*<var>shape</var>)</code></a></h4></dt><!-- RDLabel: "reshape" -->
226
+ <dd>
227
+ Reshape. Argument specification is as in NArray.</dd>
228
+ <dt><h4><a name="label-26" id="label-26"><code>axis_draw_positive</code></a></h4></dt><!-- RDLabel: "axis_draw_positive" -->
229
+ <dd>
230
+ <p>Returns the direction to plot the axis (meaningful only if self is a
231
+ coordinate variable.) </p>
232
+ <p>The current implementation is based on NetCDF conventions,
233
+ so REDEFINE IT IN SUBCLASSES if it is not appropriate.</p>
234
+ <p>RETURN VALUE</p>
235
+ <ul>
236
+ <li>one of the following:
237
+ <ul>
238
+ <li>true: axis should be drawn in the increasing order (to right/upward)</li>
239
+ <li>false: axis should be drawn in the decreasing order</li>
240
+ <li>nil: not specified</li>
241
+ </ul></li>
242
+ </ul></dd>
243
+ <dt><h4><a name="label-27" id="label-27"><code>axis_cyclic?</code></a></h4></dt><!-- RDLabel: "axis_cyclic?" -->
244
+ <dd>
245
+ <p>Returns whether the axis is cyclic (meaningful only if self is a
246
+ coordinate variable.) </p>
247
+ <p>The current implementation is based on NetCDF conventions,
248
+ so REDEFINE IT IN SUBCLASSES if it is not appropriate.</p>
249
+ <p>RETURN VALUE</p>
250
+ <ul>
251
+ <li>one of the following:
252
+ <ul>
253
+ <li>true: cyclic</li>
254
+ <li>false: not cyclic</li>
255
+ <li>nil: not specified</li>
256
+ </ul></li>
257
+ </ul></dd>
258
+ <dt><h4><a name="label-28" id="label-28"><code>axis_modulo</code></a></h4></dt><!-- RDLabel: "axis_modulo" -->
259
+ <dd>
260
+ <p>Returns the modulo of a cyclic axis (meaningful only if self is a
261
+ coordinate variable and it is cyclic.) </p>
262
+ <p>The current implementation is based on NetCDF conventions,
263
+ so REDEFINE IT IN SUBCLASSES if it is not appropriate.</p>
264
+ <p>RETURN VALUE</p>
265
+ <ul>
266
+ <li>one of the following:
267
+ <ul>
268
+ <li>Float if the modulo is defined</li>
269
+ <li>nil if modulo is not found</li>
270
+ </ul></li>
271
+ </ul></dd>
272
+ <dt><h4><a name="label-29" id="label-29"><code>axis_cyclic_extendible?</code></a></h4></dt><!-- RDLabel: "axis_cyclic_extendible?" -->
273
+ <dd>
274
+ (meaningful only if self is a coordinate variable.)
275
+ Returns true if self is cyclic and it is suitable to exend
276
+ cyclically (having the distance between both ends
277
+ equal to (modulo - dx), where dx is the mean increment).</dd>
278
+ <dt><h4><a name="label-30" id="label-30"><code>coerce(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "coerce" -->
279
+ <dd>
280
+ For Numeric operators. (If you do not know it, see a manual or book of Ruby)</dd>
281
+ </dl>
282
+ <h2><a name="label-31" id="label-31">Methods compatible with NArray</a></h2><!-- RDLabel: "Methods compatible with NArray" -->
283
+ <p>VArray is a numeric multi-dimensional array, so it supports most of the
284
+ methods and operators in NArray. Here, the name of those methods are just
285
+ quoted. See the documentation of NArray for their usage.</p>
286
+ <h3><a name="label-32" id="label-32">Math functions</a></h3><!-- RDLabel: "Math functions" -->
287
+ <h4><a name="label-33" id="label-33">sqrt, exp, log, log10, log2, sin, cos, tan, sinh, cosh, tanh, asin, acos, atan, asinh, acosh, atanh, csc, sec, cot, csch, sech, coth, acsc, asec, acot, acsch, asech, acoth</a></h4><!-- RDLabel: "sqrt, exp, log, log10, log2, sin, cos, tan, sinh, cosh, tanh, asin, acos, atan, asinh, acosh, atanh, csc, sec, cot, csch, sech, coth, acsc, asec, acot, acsch, asech, acoth" -->
288
+ <h3><a name="label-34" id="label-34">Binary operators</a></h3><!-- RDLabel: "Binary operators" -->
289
+ <h4><a name="label-35" id="label-35">-, +, *, /, %, **, .add!, .sub!, .mul!, .div!, mod!, &gt;, &gt;=, &lt;, &lt;=, &amp;, |, ^, .eq, .ne, .gt, .ge, .lt, .le, .and, .or, .xor, .not</a></h4><!-- RDLabel: "-, +, *, /, %, **, .add!, .sub!, .mul!, .div!, mod!, >, >=, <, <=, &, |, ^, .eq, .ne, .gt, .ge, .lt, .le, .and, .or, .xor, .not" -->
290
+ <h3><a name="label-36" id="label-36">Unary operators</a></h3><!-- RDLabel: "Unary operators" -->
291
+ <h4><a name="label-37" id="label-37">~ - +</a></h4><!-- RDLabel: "~ - +" -->
292
+ <h3><a name="label-38" id="label-38">Mean etc</a></h3><!-- RDLabel: "Mean etc" -->
293
+ <h4><a name="label-39" id="label-39">mean, sum, stddev, min, max, median</a></h4><!-- RDLabel: "mean, sum, stddev, min, max, median" -->
294
+ <h3><a name="label-40" id="label-40">Other methods</a></h3><!-- RDLabel: "Other methods" -->
295
+ <p>These methods returns a NArray (not a VArray).</p>
296
+ <h4><a name="label-41" id="label-41">all?, any?, none?, where, where2, floor, ceil, round, to_f, to_i, to_a</a></h4><!-- RDLabel: "all?, any?, none?, where, where2, floor, ceil, round, to_f, to_i, to_a" -->
297
+
298
+ </body>
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+ </html>