gphys 1.2.2.1 → 1.4.3
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- checksums.yaml +7 -0
- data/.gitignore +8 -17
- data/.rspec +2 -0
- data/.travis.yml +3 -0
- data/ChangeLog +5762 -753
- data/LICENSE.txt +30 -18
- data/Rakefile +1 -0
- data/bin/console +14 -0
- data/bin/gpcat +43 -2
- data/bin/gpcut +16 -0
- data/bin/gpvect +167 -15
- data/bin/gpview +254 -51
- data/bin/setup +7 -0
- data/dim_op.c +1220 -0
- data/doc/attribute.html +19 -0
- data/doc/attributenetcdf.html +15 -0
- data/doc/axis.html +387 -0
- data/doc/coordmapping.html +111 -0
- data/doc/coordtransform.html +36 -0
- data/doc/dclext.html +821 -0
- data/doc/derivative/gphys-derivative.html +100 -0
- data/doc/derivative/index.html +21 -0
- data/doc/derivative/index.rd +14 -0
- data/doc/derivative/math-doc/document.pdf +0 -0
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- data/doc/derivative/numru-derivative.html +158 -0
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- data/ext_init.c +1 -0
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- data/lib/numru/dclext.rb +718 -546
- data/lib/numru/derivative.rb +2 -0
- data/lib/numru/ganalysis.rb +38 -0
- data/lib/numru/ganalysis/beta_plane.rb +103 -0
- data/lib/numru/ganalysis/eof.rb +3 -2
- data/lib/numru/ganalysis/fitting.rb +559 -0
- data/lib/numru/ganalysis/histogram.rb +36 -19
- data/lib/numru/ganalysis/log_p.rb +130 -0
- data/lib/numru/ganalysis/met.rb +396 -2
- data/lib/numru/ganalysis/met_z.rb +300 -0
- data/lib/numru/ganalysis/planet.rb +17 -7
- data/lib/numru/ganalysis/qg.rb +685 -0
- data/lib/numru/ganalysis/sigma_coord.rb +90 -0
- data/lib/numru/gdir.rb +2 -1
- data/lib/numru/ggraph.rb +204 -60
- data/lib/numru/ggraph_on_merdional_section.rb +1 -1
- data/lib/numru/gphys.rb +6 -0
- data/lib/numru/gphys/assoccoords.rb +18 -3
- data/lib/numru/gphys/axis.rb +209 -8
- data/lib/numru/gphys/derivative.rb +11 -0
- data/lib/numru/gphys/gphys.rb +539 -48
- data/lib/numru/gphys/gphys_dim_op.rb +331 -0
- data/lib/numru/gphys/gphys_fft.rb +48 -2
- data/lib/numru/gphys/gphys_io.rb +241 -13
- data/lib/numru/gphys/gphys_netcdf_io.rb +77 -39
- data/lib/numru/gphys/gphys_nusdas_io.rb +3 -0
- data/lib/numru/gphys/grib.rb +133 -54
- data/lib/numru/gphys/grib_params.rb +26 -3
- data/lib/numru/gphys/grid.rb +75 -34
- data/lib/numru/gphys/interpolate.rb +24 -10
- data/lib/numru/gphys/mdstorage.rb +160 -0
- data/lib/numru/gphys/netcdf_convention.rb +4 -2
- data/lib/numru/gphys/subsetmapping.rb +0 -1
- data/lib/numru/gphys/unumeric.rb +50 -5
- data/lib/numru/gphys/varray.rb +15 -30
- data/lib/numru/gphys/varraycomposite.rb +107 -24
- data/lib/numru/gphys/varraynetcdf.rb +9 -3
- data/lib/numru/gphys/version.rb +5 -0
- data/sample/druby_cli1.rb +2 -0
- data/sample/druby_cli2.rb +0 -6
- data/sample/druby_serv2.rb +0 -13
- data/spec/gphys_spec.rb +11 -0
- data/spec/spec_helper.rb +2 -0
- data/test/test_assoccoords.rb +102 -0
- data/test/test_axis.rb +61 -0
- data/test/test_fitting.rb +116 -0
- data/test/test_gphys.rb +20 -0
- data/test/test_met_z.rb +96 -0
- data/test/test_sigma_coord.rb +50 -0
- data/{test → test_old}/eof_slp.rb +0 -0
- data/{test → test_old}/mltbit.dat +0 -0
- data/{test → test_old}/test_ep_flux.rb +0 -0
- data/{test → test_old}/test_multibitIO.rb +0 -0
- metadata +530 -191
- data/README.md +0 -29
- data/lib/gphys.rb +0 -2
- data/lib/numru/dclext_datetime_ax.rb +0 -220
- data/lib/version.rb +0 -3
data/doc/grid.html
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<?xml version="1.0" ?>
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<!DOCTYPE html
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<title>../lib/numru/gphys/grid.rb</title>
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</head>
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<body>
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<h1><a name="label-0" id="label-0">class NumRU::Grid</a></h1><!-- RDLabel: "class NumRU::Grid" -->
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<p>A class to handle discretized grids of physical quantities.</p>
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<h2><a name="label-1" id="label-1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
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<dl>
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<dt><h4><a name="label-2" id="label-2"><code>Grid.new( *<var>axes</var> )</code></a></h4></dt><!-- RDLabel: "Grid.new" -->
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<dd>
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<p>Constructor.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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</dl>
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<h2><a name="label-3" id="label-3">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
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<dl>
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<dt><h4><a name="label-4" id="label-4"><code>axnames</code></a></h4></dt><!-- RDLabel: "axnames" -->
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<dd>
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<p>Returns the names of the axes</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Array of String</li>
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</ul></dd>
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<dt><h4><a name="label-5" id="label-5"><code>lost_axes</code></a></h4></dt><!-- RDLabel: "lost_axes" -->
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<dd>
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<p>Returns info on axes eliminated during operations.</p>
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<p>Useful for annotation in plots, for example (See the code of GGraph
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for an application).</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Array of String</li>
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</ul></dd>
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<dt><h4><a name="label-6" id="label-6"><code>axis(<var>dim_or_dimname</var>)</code></a></h4></dt><!-- RDLabel: "axis" -->
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<dd>
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<p>Returns an Axis</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Axis</li>
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</ul></dd>
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<dt><h4><a name="label-7" id="label-7"><code>dim_index(<var>dimname</var>)</code></a></h4></dt><!-- RDLabel: "dim_index" -->
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<dd>
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<p>Returns the integer id (count from zero) of the dimension</p>
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<p>ARGUMENT</p>
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<ul>
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<li>dimname (String or Integer) : this method is trivial if is is an integer</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Integer</li>
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</ul></dd>
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<dt><h4><a name="label-8" id="label-8"><code>coord_dim_indices(<var>coordname</var>)</code></a></h4></dt><!-- RDLabel: "coord_dim_indices" -->
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<dd>
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<p>Coordinate name --> dimension indices.</p>
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<p>ARGUMENT</p>
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<ul>
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<li>coordname (String) : Name of a coordinate</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>Array of Integer or nil --
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If the coordinate is present it is an Array
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containing dimension indices (If the coordinate is 1D,
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the lengthof the array is 1.)</li>
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</ul></dd>
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<dt><h4><a name="label-9" id="label-9"><code>set_axis(<var>dim_or_dimname</var>,<var>ax</var>)</code></a></h4></dt><!-- RDLabel: "set_axis" -->
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<dd>
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<p>Sets an axis.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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<li>ax (Axis) the axis</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label-10" id="label-10"><code>set_lost_axes( <var>lost</var> )</code></a></h4></dt><!-- RDLabel: "set_lost_axes" -->
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<dd>
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<p>Sets info on axes eliminated.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label-11" id="label-11"><code>add_lost_axes( <var>lost</var> )</code></a></h4></dt><!-- RDLabel: "add_lost_axes" -->
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<dd>
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<p>Adds info on axes eliminated to existing ones.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label-12" id="label-12"><code>delete_axes( <var>at</var>, <var>deleted_by</var>=<var>nil</var> )</code></a></h4></dt><!-- RDLabel: "delete_axes" -->
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<dd>
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<p>Delete an axis.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>at (String or Integer) to specify an axis.</li>
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<li>deleted_by (String or nil) if non-nil, it is written in
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the internal lost-axis info. Best if you put the name of the
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method, in which this method is called.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label-13" id="label-13"><code>copy</code></a></h4></dt><!-- RDLabel: "copy" -->
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<dd>
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<p>Makes a deep clone onto memory.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label-14" id="label-14"><code>merge(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "merge" -->
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<dd>
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<p>merge two grids by basically using copies of self's axes but
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using the other's if the length in self is 1 and
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the length in the other is longer</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>other (Grid)</li>
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</ul>
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<p>RETURN VALUE</p>
|
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133
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<ul>
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134
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<li>a Grid</li>
|
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135
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</ul></dd>
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136
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<dt><h4><a name="label-15" id="label-15"><code>shape</code></a></h4></dt><!-- RDLabel: "shape" -->
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137
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<dd>
|
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138
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<p>Returns the shape of self.</p>
|
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139
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<p>RETURN VALUE</p>
|
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140
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<ul>
|
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<li>an Array of Integer</li>
|
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</ul></dd>
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<dt><h4><a name="label-16" id="label-16"><code>[*<var>slicer</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
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<dd>
|
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145
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<p>Returns a subset.</p>
|
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146
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<p>ARGUMENTS</p>
|
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147
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<ul>
|
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148
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<li>Same as those for NArray#[], NetCDFVar#[], etc.</li>
|
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</ul>
|
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<p>RETURN VALUE</p>
|
|
151
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<ul>
|
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152
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<li>a Grid</li>
|
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</ul></dd>
|
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154
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<dt><h4><a name="label-17" id="label-17"><code>cut(*<var>args</var>)</code></a></h4></dt><!-- RDLabel: "cut" -->
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<dd>
|
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156
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<p>Similar to <a href="#label-16">[]</a>, but the subset is specified by physical coordinate.</p>
|
|
157
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<p>ARGUMENTS</p>
|
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158
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<ul>
|
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159
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<li>pattern 1: similar to those for <a href="#label-16">[]</a>, where the first
|
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160
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argument specifies a subset for the first dimension.</li>
|
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161
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<li>pattern 2: by a Hash, in which keys are axis names.</li>
|
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162
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</ul>
|
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163
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<p>EXAMPLES</p>
|
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164
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<ul>
|
|
165
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<li><p>Pattern 1</p>
|
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166
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<pre>gphys.cut(135.5,0..20.5,false)</pre></li>
|
|
167
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+
<li><p>Pattern 2</p>
|
|
168
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<pre>gphys.cut({'lon'=>135.5,'lat'=>0..20})</pre></li>
|
|
169
|
+
</ul>
|
|
170
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<p>RETURN VALUE</p>
|
|
171
|
+
<ul>
|
|
172
|
+
<li>an Array : [a Grid, slicer], where slicer is an array
|
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173
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+
to be used to make a subset of an corresponding varray
|
|
174
|
+
(to be used in GPhys#cut).</li>
|
|
175
|
+
</ul></dd>
|
|
176
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<dt><h4><a name="label-18" id="label-18"><code>cut_rank_conserving(*<var>args</var>)</code></a></h4></dt><!-- RDLabel: "cut_rank_conserving" -->
|
|
177
|
+
<dd>
|
|
178
|
+
Similar to <a href="#label-17">cut</a>, but the rank is conserved by not eliminating
|
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179
|
+
any dimension (whose length could be one).</dd>
|
|
180
|
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<dt><h4><a name="label-19" id="label-19"><code>cut_assoccoord(<var>hasharg</var>)</code></a></h4></dt><!-- RDLabel: "cut_assoccoord" -->
|
|
181
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+
<dd>
|
|
182
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+
Cut with respect to the asscoated coordinates. Similar to cut,
|
|
183
|
+
when the argeuemnt is a Hash, but hash keys are the names of the
|
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184
|
+
asscoated coordinates.</dd>
|
|
185
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+
<dt><h4><a name="label-20" id="label-20"><code>change_axis(<var>dim</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "change_axis" -->
|
|
186
|
+
<dd>
|
|
187
|
+
<p>Replaces an axis. (Returns a new object)</p>
|
|
188
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+
<p>ARGUMENTS</p>
|
|
189
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+
<ul>
|
|
190
|
+
<li>dim_or_dimname (String or Integer) to specify an axis.</li>
|
|
191
|
+
<li>axis (Axis)</li>
|
|
192
|
+
</ul>
|
|
193
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+
<p>RETURN VALUE</p>
|
|
194
|
+
<ul>
|
|
195
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+
<li>a Grid</li>
|
|
196
|
+
</ul></dd>
|
|
197
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+
<dt><h4><a name="label-21" id="label-21"><code>insert_axis(<var>dim</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "insert_axis" -->
|
|
198
|
+
<dd>
|
|
199
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+
<p>Inserts an axis. (non destructive; returns a new object)</p>
|
|
200
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+
<p>ARGUMENTS</p>
|
|
201
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+
<ul>
|
|
202
|
+
<li>dim (Integer) to specify the position to insert</li>
|
|
203
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+
<li>axis (Axis)</li>
|
|
204
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</ul>
|
|
205
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<p>RETURN VALUE</p>
|
|
206
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+
<ul>
|
|
207
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+
<li>a Grid</li>
|
|
208
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+
</ul></dd>
|
|
209
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+
<dt><h4><a name="label-22" id="label-22"><code>transpose( *<var>dims</var> )</code></a></h4></dt><!-- RDLabel: "transpose" -->
|
|
210
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+
<dd>
|
|
211
|
+
<p>Transpose.</p>
|
|
212
|
+
<p>ARGUMENTS</p>
|
|
213
|
+
<ul>
|
|
214
|
+
<li>dims (integers) : for example, [1,0] to transpose a 2D object.
|
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215
|
+
For 3D objects, [1,0,2], [2,1,0], etc.etc.</li>
|
|
216
|
+
</ul>
|
|
217
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+
<p>RETURN VALUE</p>
|
|
218
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+
<ul>
|
|
219
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+
<li>a Grid</li>
|
|
220
|
+
</ul></dd>
|
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221
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+
</dl>
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222
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</body>
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</html>
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data/doc/index.html
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<?xml version="1.0" ?>
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<!DOCTYPE html
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<title>index.rd</title>
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8
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</head>
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9
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<body>
|
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10
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<h1><a name="label-0" id="label-0">Reference manuals of the GPhys library</a></h1><!-- RDLabel: "Reference manuals of the GPhys library" -->
|
|
11
|
+
<h2><a name="label-1" id="label-1">Highlight</a></h2><!-- RDLabel: "Highlight" -->
|
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12
|
+
<p>Core part of the GPhys class</p>
|
|
13
|
+
<ul>
|
|
14
|
+
<li><a href="gphys.html">class NumRu::GPhys</a> </li>
|
|
15
|
+
<li>See also the entire <a href="#label-3">GPhys Core Part</a> section.</li>
|
|
16
|
+
</ul>
|
|
17
|
+
<p>Visualization library</p>
|
|
18
|
+
<ul>
|
|
19
|
+
<li><a href="ggraph.html">module NumRu::GGraph</a></li>
|
|
20
|
+
</ul>
|
|
21
|
+
<p>Data analysis library</p>
|
|
22
|
+
<ul>
|
|
23
|
+
<li><a href="ganalysis/doc/">module NumRu::GAnalysis</a></li>
|
|
24
|
+
</ul>
|
|
25
|
+
<p><a href="#label-8">Application Commands</a></p>
|
|
26
|
+
<p>---------------------------------------------------------------------</p>
|
|
27
|
+
<h2><a name="label-2" id="label-2">GPhys and its components</a></h2><!-- RDLabel: "GPhys and its components" -->
|
|
28
|
+
<h4><a name="label-3" id="label-3">GPhys Core Part</a></h4><!-- RDLabel: "GPhys Core Part" -->
|
|
29
|
+
<p>A GPhys object has the following structure:</p>
|
|
30
|
+
<pre>-
|
|
31
|
+
has 1
|
|
32
|
+
a GPhys --------- array-like data (VArray)
|
|
33
|
+
| has 1
|
|
34
|
+
--------- grid (Grid)
|
|
35
|
+
| has rank
|
|
36
|
+
------------ axis (Axis)
|
|
37
|
+
| has 1
|
|
38
|
+
-------- 1D position data (VArray)
|
|
39
|
+
| has 0..
|
|
40
|
+
-------- ancillary data (VArray)</pre>
|
|
41
|
+
<p>That is, a GPhys object consists of data (whose class is VArray) and
|
|
42
|
+
grid (whose class is Grid). The latter consists of axes (whose class is
|
|
43
|
+
Axis), which consist of VArray objects (such as ones that have
|
|
44
|
+
1-dimensional grid-point position data). To use GPhys, it is
|
|
45
|
+
useful to know these four classes.</p>
|
|
46
|
+
<ul>
|
|
47
|
+
<li><a href="varray.html">class NumRu::VArray</a> :
|
|
48
|
+
Virtual Array class, which holds multi-dimensional data of various
|
|
49
|
+
format and media (on memory or in file).
|
|
50
|
+
<ul>
|
|
51
|
+
<li><a href="varraycomposite.html">class NumRu::VArrayComposite</a> :
|
|
52
|
+
Subclass of VArray to bundle multiple VArrays by "tiling".</li>
|
|
53
|
+
</ul></li>
|
|
54
|
+
<li><a href="axis.html">class NumRu::Axis</a> : A class to represent a discretized physical coordinate.</li>
|
|
55
|
+
<li><a href="grid.html">class NumRu::Grid</a> : A class to represent discretized grids of physical quantities.</li>
|
|
56
|
+
<li><a href="gphys.html">class NumRu::GPhys</a> : Core part of the GPhys class</li>
|
|
57
|
+
</ul>
|
|
58
|
+
<h4><a name="label-4" id="label-4">Miscellaneous Extensions of GPhys</a></h4><!-- RDLabel: "Miscellaneous Extensions of GPhys" -->
|
|
59
|
+
<ul>
|
|
60
|
+
<li><a href="coordtransform.html">coordinate transformation</a> :
|
|
61
|
+
Extension of the NumRu::GPhys class for coordinate transformation.</li>
|
|
62
|
+
<li><a href="gphys_fft.html">FFT</a> :
|
|
63
|
+
Extension of the NumRu::GPhys class
|
|
64
|
+
for the Fast Fourier Transformation and its applications</li>
|
|
65
|
+
<li><a href="derivative/index.html">module NumRu::GPhys::Derivative</a> :
|
|
66
|
+
Module functions to make differentiation of GPhys objects.</li>
|
|
67
|
+
<li><a href="ep_flux/index.html">module NumRu::GPhys::EP_Flux</a> :
|
|
68
|
+
Module functions to derive the Eliassen-Palm flux and related
|
|
69
|
+
quantities (such as the residual circulation and its mass stream function).</li>
|
|
70
|
+
<li><a href="interpolate/index.html">interpolation</a> : Interpolation library</li>
|
|
71
|
+
<li><a href="ganalysis/doc/">module NumRu::GAnalysis</a>
|
|
72
|
+
<ul>
|
|
73
|
+
<li>The following are old documents:
|
|
74
|
+
<ul>
|
|
75
|
+
<li><a href="ganalysis_planet/index.html">GAnalysis::Planet</a> : Library for spherical planets (default: Earth)</li>
|
|
76
|
+
<li><a href="ganalysis_met/index.html">GAnalysis::Met</a> : Meteorological analysis library</li>
|
|
77
|
+
</ul></li>
|
|
78
|
+
</ul></li>
|
|
79
|
+
</ul>
|
|
80
|
+
<h4><a name="label-5" id="label-5">Miscellaneous Dependent Libraries Distributed with GPhys</a></h4><!-- RDLabel: "Miscellaneous Dependent Libraries Distributed with GPhys" -->
|
|
81
|
+
<ul>
|
|
82
|
+
<li><a href="unumeric.html">class NumRu::UNumeric</a> :
|
|
83
|
+
Numeric with units (combination of Numeric and Units)</li>
|
|
84
|
+
<li><a href="derivative/index.html">module NumRu::Derivative</a> :
|
|
85
|
+
Module functions to make differentiation using NArray.</li>
|
|
86
|
+
<li><!-- Reference, RDLabel "class NumRu::SubsetMapping" doesn't exist --><em class="label-not-found">class NumRu::SubsetMapping</em><!-- Reference end --> : Sorry, yet to be written.</li>
|
|
87
|
+
<li><a href="attribute.html">class NumRu::Attribute</a> : A Hash class compatible with NetCDF attributes.</li>
|
|
88
|
+
<li><a href="coordmapping.html">class NumRu::CoordMapping</a> :
|
|
89
|
+
<ul>
|
|
90
|
+
<li><a href="coordmapping.html">class NumRu::LinearCoordMapping</a> :</li>
|
|
91
|
+
</ul></li>
|
|
92
|
+
<li><a href="grads_gridded.html">class NumRu::GrADS_Gridded</a> :
|
|
93
|
+
Class to handle GrADS data.</li>
|
|
94
|
+
<li><a href="grib.html">class NumRu::Grib</a> :
|
|
95
|
+
a class for GRIB datasets.</li>
|
|
96
|
+
<li><a href="htdir.html">class NumRu::GDir::HtDir</a> :
|
|
97
|
+
A class to treat the URL of a "directory" as a directory (used in
|
|
98
|
+
GDir).</li>
|
|
99
|
+
<li><a href="derivative/dclext.html">module NumRu::DCLExt</a> :
|
|
100
|
+
An extension of RubyDCL.</li>
|
|
101
|
+
</ul>
|
|
102
|
+
<h4><a name="label-6" id="label-6">External File Handlers of GPhys</a></h4><!-- RDLabel: "External File Handlers of GPhys" -->
|
|
103
|
+
<ul>
|
|
104
|
+
<li><a href="gphys_io.html">module NumRu::GPhys::IO</a> :
|
|
105
|
+
GPhys file IO module for all file types.</li>
|
|
106
|
+
<li><a href="gphys_netcdf_io.html">module NumRu::GPhys::NetCDF_IO</a> :
|
|
107
|
+
NetCDF data input/output.</li>
|
|
108
|
+
<li><a href="netcdf_convention.html">module NumRu::NetCDF_Conventions,
|
|
109
|
+
module NumRu::NetCDF_Convention_Users_Guide etc.
|
|
110
|
+
</a> :
|
|
111
|
+
NetCDF convention handler.</li>
|
|
112
|
+
<li><a href="gphys_grads_io.html">module NumRu::GPhys::GrADS_IO</a> :
|
|
113
|
+
GrADS data input/output.</li>
|
|
114
|
+
<li><a href="gphys_grib_io.html">module NumRu::GPhys::Grib_IO</a> :
|
|
115
|
+
GRIB data IO.</li>
|
|
116
|
+
</ul>
|
|
117
|
+
<h2><a name="label-7" id="label-7">Applications distributed with GPhys</a></h2><!-- RDLabel: "Applications distributed with GPhys" -->
|
|
118
|
+
<p>To use the following, you have to <var>require</var> explicitly. </p>
|
|
119
|
+
<ul>
|
|
120
|
+
<li><a href="ggraph.html">module NumRu::GGraph</a> :
|
|
121
|
+
A graphic library using GPhys.</li>
|
|
122
|
+
<li><a href="gdir.html">class NumRu::GDir</a> :
|
|
123
|
+
A class to represent directories and data files for GPhys.</li>
|
|
124
|
+
<li><a href="gdir_connect_ftp-like.html">irb start-up program gdir_connect_ftp-like</a> A library to be required
|
|
125
|
+
to interactively connect with a <a href="gdir_server.html">gdir_server</a>.</li>
|
|
126
|
+
</ul>
|
|
127
|
+
<h2><a name="label-8" id="label-8">Application Commands</a></h2><!-- RDLabel: "Application Commands" -->
|
|
128
|
+
<ul>
|
|
129
|
+
<li><a href="grads2nc_with_gphys.html">grads2nc_with_gphys</a> file converter
|
|
130
|
+
from the GrADS format to NetCDF</li>
|
|
131
|
+
<li><a href="gdir_server.html">gdir_server</a> A dRuby server with a GDir
|
|
132
|
+
at the front end.</li>
|
|
133
|
+
<li><a href="gdir_client.html">gdir_client</a> : A client of gdir_server
|
|
134
|
+
using irb with <a href="gdir_connect_ftp-like.html">gdir_connect_ftp-like</a></li>
|
|
135
|
+
<li><a href="gpcat.html">gpcat</a> Read a variable in multiple NetCDF files, concatenate and write them to a single netcdf file. </li>
|
|
136
|
+
<li><a href="gpcut.html">gpcut</a> extract, slicing and thinning a GPhys variable</li>
|
|
137
|
+
<li><a href="gplist.html">gplist</a> print out variables and their dimensions</li>
|
|
138
|
+
<li><a href="gpmath.html">gpmath</a> operate a math function to a GPhys variable</li>
|
|
139
|
+
<li><a href="gpmaxmin.html">gpmaxmin</a> prints maximum and minimum values of a GPhys variable</li>
|
|
140
|
+
<li><a href="gpprint.html">gpprint</a> prints the values of a GPhys variable </li>
|
|
141
|
+
<li><a href="gpview.html">gpview</a> visualizer (2D, 1D)</li>
|
|
142
|
+
</ul>
|
|
143
|
+
|
|
144
|
+
</body>
|
|
145
|
+
</html>
|
data/doc/index.rd
ADDED
|
@@ -0,0 +1,138 @@
|
|
|
1
|
+
=begin
|
|
2
|
+
|
|
3
|
+
=Reference manuals of the GPhys library
|
|
4
|
+
|
|
5
|
+
==Highlight
|
|
6
|
+
Core part of the GPhys class
|
|
7
|
+
* ((<class NumRu::GPhys|URL:gphys.html>))
|
|
8
|
+
* See also the entire ((<GPhys Core Part>)) section.
|
|
9
|
+
Visualization library
|
|
10
|
+
* ((<module NumRu::GGraph|URL:ggraph.html>))
|
|
11
|
+
|
|
12
|
+
Data analysis library
|
|
13
|
+
* ((<module NumRu::GAnalysis|URL:ganalysis/doc/>))
|
|
14
|
+
|
|
15
|
+
((<Application Commands>))
|
|
16
|
+
|
|
17
|
+
---------------------------------------------------------------------
|
|
18
|
+
|
|
19
|
+
==GPhys and its components
|
|
20
|
+
|
|
21
|
+
====GPhys Core Part
|
|
22
|
+
|
|
23
|
+
A GPhys object has the following structure:
|
|
24
|
+
|
|
25
|
+
-
|
|
26
|
+
has 1
|
|
27
|
+
a GPhys --------- array-like data (VArray)
|
|
28
|
+
| has 1
|
|
29
|
+
--------- grid (Grid)
|
|
30
|
+
| has rank
|
|
31
|
+
------------ axis (Axis)
|
|
32
|
+
| has 1
|
|
33
|
+
-------- 1D position data (VArray)
|
|
34
|
+
| has 0..
|
|
35
|
+
-------- ancillary data (VArray)
|
|
36
|
+
|
|
37
|
+
That is, a GPhys object consists of data (whose class is VArray) and
|
|
38
|
+
grid (whose class is Grid). The latter consists of axes (whose class is
|
|
39
|
+
Axis), which consist of VArray objects (such as ones that have
|
|
40
|
+
1-dimensional grid-point position data). To use GPhys, it is
|
|
41
|
+
useful to know these four classes.
|
|
42
|
+
|
|
43
|
+
* ((<class NumRu::VArray|URL:varray.html>)) :
|
|
44
|
+
Virtual Array class, which holds multi-dimensional data of various
|
|
45
|
+
format and media (on memory or in file).
|
|
46
|
+
|
|
47
|
+
* ((<class NumRu::VArrayComposite|URL:varraycomposite.html>)) :
|
|
48
|
+
Subclass of VArray to bundle multiple VArrays by "tiling".
|
|
49
|
+
|
|
50
|
+
* ((<class NumRu::Axis|URL:axis.html>)) : A class to represent a discretized physical coordinate.
|
|
51
|
+
* ((<class NumRu::Grid|URL:grid.html>)) : A class to represent discretized grids of physical quantities.
|
|
52
|
+
* ((<class NumRu::GPhys|URL:gphys.html>)) : Core part of the GPhys class
|
|
53
|
+
|
|
54
|
+
====Miscellaneous Extensions of GPhys
|
|
55
|
+
|
|
56
|
+
* ((<coordinate transformation|URL:coordtransform.html>)) :
|
|
57
|
+
Extension of the NumRu::GPhys class for coordinate transformation.
|
|
58
|
+
* ((<FFT|URL:gphys_fft.html>)) :
|
|
59
|
+
Extension of the NumRu::GPhys class
|
|
60
|
+
for the Fast Fourier Transformation and its applications
|
|
61
|
+
* ((<module NumRu::GPhys::Derivative|URL:derivative/index.html>)) :
|
|
62
|
+
Module functions to make differentiation of GPhys objects.
|
|
63
|
+
* ((<module NumRu::GPhys::EP_Flux|URL:ep_flux/index.html>)) :
|
|
64
|
+
Module functions to derive the Eliassen-Palm flux and related
|
|
65
|
+
quantities (such as the residual circulation and its mass stream function).
|
|
66
|
+
* ((<interpolation|URL:interpolate/index.html>)) : Interpolation library
|
|
67
|
+
|
|
68
|
+
* ((<module NumRu::GAnalysis|URL:ganalysis/doc/>))
|
|
69
|
+
* The following are old documents:
|
|
70
|
+
* ((<GAnalysis::Planet|URL:ganalysis_planet/index.html>)) : Library for spherical planets (default: Earth)
|
|
71
|
+
* ((<GAnalysis::Met|URL:ganalysis_met/index.html>)) : Meteorological analysis library
|
|
72
|
+
|
|
73
|
+
====Miscellaneous Dependent Libraries Distributed with GPhys
|
|
74
|
+
|
|
75
|
+
* ((<class NumRu::UNumeric|URL:unumeric.html>)) :
|
|
76
|
+
Numeric with units (combination of Numeric and Units)
|
|
77
|
+
* ((<module NumRu::Derivative|URL:derivative/index.html>)) :
|
|
78
|
+
Module functions to make differentiation using NArray.
|
|
79
|
+
* ((<class NumRu::SubsetMapping>)) : Sorry, yet to be written.
|
|
80
|
+
* ((<class NumRu::Attribute|URL:attribute.html>)) : A Hash class compatible with NetCDF attributes.
|
|
81
|
+
* ((<class NumRu::CoordMapping|URL:coordmapping.html>)) :
|
|
82
|
+
* ((<class NumRu::LinearCoordMapping|URL:coordmapping.html>)) :
|
|
83
|
+
* ((<class NumRu::GrADS_Gridded|URL:grads_gridded.html>)) :
|
|
84
|
+
Class to handle GrADS data.
|
|
85
|
+
* ((<class NumRu::Grib|URL:grib.html>)) :
|
|
86
|
+
a class for GRIB datasets.
|
|
87
|
+
* ((<class NumRu::GDir::HtDir|URL:htdir.html>)) :
|
|
88
|
+
A class to treat the URL of a "directory" as a directory (used in
|
|
89
|
+
GDir).
|
|
90
|
+
* ((<module NumRu::DCLExt|URL:derivative/dclext.html>)) :
|
|
91
|
+
An extension of RubyDCL.
|
|
92
|
+
|
|
93
|
+
====External File Handlers of GPhys
|
|
94
|
+
|
|
95
|
+
* ((<module NumRu::GPhys::IO|URL:gphys_io.html>)) :
|
|
96
|
+
GPhys file IO module for all file types.
|
|
97
|
+
* ((<module NumRu::GPhys::NetCDF_IO|URL:gphys_netcdf_io.html>)) :
|
|
98
|
+
NetCDF data input/output.
|
|
99
|
+
* ((<module NumRu::NetCDF_Conventions,
|
|
100
|
+
module NumRu::NetCDF_Convention_Users_Guide etc.
|
|
101
|
+
|URL:netcdf_convention.html>)) :
|
|
102
|
+
NetCDF convention handler.
|
|
103
|
+
* ((<module NumRu::GPhys::GrADS_IO|URL:gphys_grads_io.html>)) :
|
|
104
|
+
GrADS data input/output.
|
|
105
|
+
* ((<module NumRu::GPhys::Grib_IO|URL:gphys_grib_io.html>)) :
|
|
106
|
+
GRIB data IO.
|
|
107
|
+
|
|
108
|
+
==Applications distributed with GPhys
|
|
109
|
+
|
|
110
|
+
To use the following, you have to ((|require|)) explicitly.
|
|
111
|
+
|
|
112
|
+
* ((<module NumRu::GGraph|URL:ggraph.html>)) :
|
|
113
|
+
A graphic library using GPhys.
|
|
114
|
+
|
|
115
|
+
* ((<class NumRu::GDir|URL:gdir.html>)) :
|
|
116
|
+
A class to represent directories and data files for GPhys.
|
|
117
|
+
|
|
118
|
+
* ((<irb start-up program gdir_connect_ftp-like|URL:gdir_connect_ftp-like.html>)) A library to be required
|
|
119
|
+
to interactively connect with a ((<gdir_server|URL:gdir_server.html>)).
|
|
120
|
+
|
|
121
|
+
==Application Commands
|
|
122
|
+
|
|
123
|
+
* ((<grads2nc_with_gphys|URL:grads2nc_with_gphys.html>)) file converter
|
|
124
|
+
from the GrADS format to NetCDF
|
|
125
|
+
* ((<gdir_server|URL:gdir_server.html>)) A dRuby server with a GDir
|
|
126
|
+
at the front end.
|
|
127
|
+
* ((<gdir_client|URL:gdir_client.html>)) : A client of gdir_server
|
|
128
|
+
using irb with ((<gdir_connect_ftp-like|URL:gdir_connect_ftp-like.html>))
|
|
129
|
+
|
|
130
|
+
* ((<gpcat|URL:gpcat.html>)) Read a variable in multiple NetCDF files, concatenate and write them to a single netcdf file.
|
|
131
|
+
* ((<gpcut|URL:gpcut.html>)) extract, slicing and thinning a GPhys variable
|
|
132
|
+
* ((<gplist|URL:gplist.html>)) print out variables and their dimensions
|
|
133
|
+
* ((<gpmath|URL:gpmath.html>)) operate a math function to a GPhys variable
|
|
134
|
+
* ((<gpmaxmin|URL:gpmaxmin.html>)) prints maximum and minimum values of a GPhys variable
|
|
135
|
+
* ((<gpprint|URL:gpprint.html>)) prints the values of a GPhys variable
|
|
136
|
+
* ((<gpview|URL:gpview.html>)) visualizer (2D, 1D)
|
|
137
|
+
|
|
138
|
+
=end
|