gphys 1.2.2.1 → 1.4.3
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- checksums.yaml +7 -0
- data/.gitignore +8 -17
- data/.rspec +2 -0
- data/.travis.yml +3 -0
- data/ChangeLog +5762 -753
- data/LICENSE.txt +30 -18
- data/Rakefile +1 -0
- data/bin/console +14 -0
- data/bin/gpcat +43 -2
- data/bin/gpcut +16 -0
- data/bin/gpvect +167 -15
- data/bin/gpview +254 -51
- data/bin/setup +7 -0
- data/dim_op.c +1220 -0
- data/doc/attribute.html +19 -0
- data/doc/attributenetcdf.html +15 -0
- data/doc/axis.html +387 -0
- data/doc/coordmapping.html +111 -0
- data/doc/coordtransform.html +36 -0
- data/doc/dclext.html +821 -0
- data/doc/derivative/gphys-derivative.html +100 -0
- data/doc/derivative/index.html +21 -0
- data/doc/derivative/index.rd +14 -0
- data/doc/derivative/math-doc/document.pdf +0 -0
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- data/doc/derivative/numru-derivative.html +158 -0
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- data/ext_init.c +1 -0
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- data/lib/numru/dclext.rb +718 -546
- data/lib/numru/derivative.rb +2 -0
- data/lib/numru/ganalysis.rb +38 -0
- data/lib/numru/ganalysis/beta_plane.rb +103 -0
- data/lib/numru/ganalysis/eof.rb +3 -2
- data/lib/numru/ganalysis/fitting.rb +559 -0
- data/lib/numru/ganalysis/histogram.rb +36 -19
- data/lib/numru/ganalysis/log_p.rb +130 -0
- data/lib/numru/ganalysis/met.rb +396 -2
- data/lib/numru/ganalysis/met_z.rb +300 -0
- data/lib/numru/ganalysis/planet.rb +17 -7
- data/lib/numru/ganalysis/qg.rb +685 -0
- data/lib/numru/ganalysis/sigma_coord.rb +90 -0
- data/lib/numru/gdir.rb +2 -1
- data/lib/numru/ggraph.rb +204 -60
- data/lib/numru/ggraph_on_merdional_section.rb +1 -1
- data/lib/numru/gphys.rb +6 -0
- data/lib/numru/gphys/assoccoords.rb +18 -3
- data/lib/numru/gphys/axis.rb +209 -8
- data/lib/numru/gphys/derivative.rb +11 -0
- data/lib/numru/gphys/gphys.rb +539 -48
- data/lib/numru/gphys/gphys_dim_op.rb +331 -0
- data/lib/numru/gphys/gphys_fft.rb +48 -2
- data/lib/numru/gphys/gphys_io.rb +241 -13
- data/lib/numru/gphys/gphys_netcdf_io.rb +77 -39
- data/lib/numru/gphys/gphys_nusdas_io.rb +3 -0
- data/lib/numru/gphys/grib.rb +133 -54
- data/lib/numru/gphys/grib_params.rb +26 -3
- data/lib/numru/gphys/grid.rb +75 -34
- data/lib/numru/gphys/interpolate.rb +24 -10
- data/lib/numru/gphys/mdstorage.rb +160 -0
- data/lib/numru/gphys/netcdf_convention.rb +4 -2
- data/lib/numru/gphys/subsetmapping.rb +0 -1
- data/lib/numru/gphys/unumeric.rb +50 -5
- data/lib/numru/gphys/varray.rb +15 -30
- data/lib/numru/gphys/varraycomposite.rb +107 -24
- data/lib/numru/gphys/varraynetcdf.rb +9 -3
- data/lib/numru/gphys/version.rb +5 -0
- data/sample/druby_cli1.rb +2 -0
- data/sample/druby_cli2.rb +0 -6
- data/sample/druby_serv2.rb +0 -13
- data/spec/gphys_spec.rb +11 -0
- data/spec/spec_helper.rb +2 -0
- data/test/test_assoccoords.rb +102 -0
- data/test/test_axis.rb +61 -0
- data/test/test_fitting.rb +116 -0
- data/test/test_gphys.rb +20 -0
- data/test/test_met_z.rb +96 -0
- data/test/test_sigma_coord.rb +50 -0
- data/{test → test_old}/eof_slp.rb +0 -0
- data/{test → test_old}/mltbit.dat +0 -0
- data/{test → test_old}/test_ep_flux.rb +0 -0
- data/{test → test_old}/test_multibitIO.rb +0 -0
- metadata +530 -191
- data/README.md +0 -29
- data/lib/gphys.rb +0 -2
- data/lib/numru/dclext_datetime_ax.rb +0 -220
- data/lib/version.rb +0 -3
data/doc/gphys_fft.html
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<title>../lib/numru/gphys/gphys_fft.rb</title>
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</head>
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<body>
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<h1><a name="label-0" id="label-0">extension of class NumRu::GPhys -- Fast Fourier transformation and its applications</a></h1><!-- RDLabel: "extension of class NumRu::GPhys ­­ Fast Fourier transformation and its applications" -->
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<p>This manual documents the methods of NumRu::GPhys defined in gphys_fft.rb</p>
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<h1><a name="label-1" id="label-1">class methods</a></h1><!-- RDLabel: "class methods" -->
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<dl>
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<dt><h4><a name="label-2" id="label-2"><code>GPhys::fft_ignore_missing( <var>ignore</var>=<var>true</var>, <var>replace_val</var>=<var>nil</var> )</code></a></h4></dt><!-- RDLabel: "GPhys::fft_ignore_missing" -->
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<dd>
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Set a flag (class variable) to ignore missing values.
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This is for data that do not have missing
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but is treated as potentially having missing (often
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by having the valid_* attributes of NetCDF.)
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If replace_val is specified, data missing with replaced
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with that value.</dd>
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</dl>
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<h1><a name="label-3" id="label-3">methods</a></h1><!-- RDLabel: "methods" -->
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<dl>
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<dt><h4><a name="label-4" id="label-4"><code>fft(<var>backward</var>=<var>false</var>, *<var>dims</var>)</code></a></h4></dt><!-- RDLabel: "fft" -->
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<dd>
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<p>Fast Fourier Transformation (FFT) by using
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(<a href="http://www.fftw.org">FFTW</a>) ver 3 or ver 2.
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A FFTW ver.2 interface is included in NArray, while
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to use FFTW ver.3, you have to install separately.
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Dimension specification by the argument dims is available
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only with ver.3. By default, FFT is applied to all dimensions.</p>
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<p>The transformation is complex. If the input data is not complex,
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it will be coerced to complex before transformation.</p>
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<p>When the FT is forward, the result is normalized
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(i.e., divided by the data number), unlike the default behavior of
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FFTW.</p>
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<p>Each coordinate is assumed to be equally spaced without checking.
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The new coordinate variables will be set equal to wavenumbers,
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derived as 2*PI/(length of the axis)*[0,1,2,..], where the length
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of the axis is derived as (coord.val.max - coord.val.min)*(n+1)/n.</p>
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<p>REMARK</p>
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<ul>
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<li>If the units of the original coordinate is degree (or its
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equivalent ones such as degrees_east), the wavenumber was
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made in integers by converting the coordinate based on
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radian.</li>
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</ul>
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<p>ARGUMENTS</p>
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<ul>
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<li>backward (true of false) : when true, backward FT is done;
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otherwise forward FT is done.</li>
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<li>dims (integers) : dimensions to apply FFT</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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</ul>
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<p>EXAMPLE</p>
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<pre>gphy.fft # forward, for all dimensions
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gphy.fft(true) # backward, for all dimensions
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gphy.fft(nil, 0,1) # forward, for the first and second dimensions.
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gphy.fft(true, -1) # backward, for the last dimension.</pre></dd>
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<dt><h4><a name="label-5" id="label-5"><code>detrend(<var>dim1</var>[,<var>dim2</var>[,...]])</code></a></h4></dt><!-- RDLabel: "detrend" -->
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<dd>
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<p>Remove means and linear trends along dimension(s) specified.
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Algorithm: 1st order polynomial fitting.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim? (Integer of String): the dimension along which you want to remove
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trends.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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</ul>
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<p>EXAMPLE</p>
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<ul>
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<li>See <a href="#label-5">detrend</a>.</li>
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</ul></dd>
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<dt><h4><a name="label-6" id="label-6"><code>cos_taper(<var>dim1</var>[,<var>dim2</var>[,...]])</code></a></h4></dt><!-- RDLabel: "cos_taper" -->
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<dd>
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<p>Cosine tapering along dimension(s) specified.</p>
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<p>Algorithm: to multiply with the half cosine curves at the both
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1/10 ends of the data.</p>
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<pre>cos taper shape:
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_____________
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_/ \_
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-> <- -> <-
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T/10 T/10
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half-cosine half-cosine
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shaped shaped</pre>
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<p>The spectra of tapered data should be multiplied by 1/0.875,
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which is stored as GPhys::COS_TAPER_SP_FACTOR (==1/0.875).</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim? (Integer of String): the dimension along which you want to remove
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trends.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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</ul>
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<p>EXAMPLE</p>
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<pre>dim = 0 # for the 1st dimension
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fc = gphys.detrend(dim).cos_taper(dim).fft(nil,dim)
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sp = fc.abs**2 * GPhys::COS_TAPER_SP_FACTOR</pre></dd>
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<dt><h4><a name="label-7" id="label-7"><code>spect_zero_centering(<var>dim</var>)</code></a></h4></dt><!-- RDLabel: "spect_zero_centering" -->
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<dd>
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<p>Shifts the wavenumber axis to cover from -K/2 to K/2 instead of
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from 0 to K-1, where the wavenumber is symbolically treated as integer,
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which is actually not the case, though. Since the first (-K/2) and
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the last (K/2) elements are duplicated, both are divided by 2.
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Therefore, this method is to be used for spectra (squared quantity)
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rather than the raw Fourier coefficients. (That is why the method name
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is prefixed by "spect_").</p>
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<p>The method is applied for a single dimension (specified by the argument
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dim). If you need to apply for multiple dimensions, use it for multiple
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times.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim (integer): the dimension you want to shift spectra elements.
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Count starts from zero.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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</ul>
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<p>EXAMPLE</p>
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<ul>
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<li><p>To get a spectra of a variable var along the 1st and 2nd dimensions:</p>
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<pre>fc = var.fft(nil, 0,1) # --> Fourier coef
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sp = ( fc.abs**2 ).spect_zero_centering(0).spect_zero_centering(1)</pre>
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<p>Note that spect_zero_centering is applied after taking |fc|^2.</p></li>
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<li><p>Same but if you want to have the 2nd dimension one-sided:</p>
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<pre>fc = var.fft(nil, 0,1)
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sp = ( fc.abs**2 ).spect_zero_centering(0).spect_one_sided(1)</pre></li>
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<li><p>Similar to the first example but for cross spectra:</p>
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<pre>fc1 = var1.fft(nil, 0,1)
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fc2 = var2.fft(nil, 0,1)
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xsp = (fc1 * fc2.conj).spect_zero_centering(0).spect_zero_centering(1)</pre></li>
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</ul></dd>
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<dt><h4><a name="label-8" id="label-8"><code>spect_one_sided(<var>dim</var>)</code></a></h4></dt><!-- RDLabel: "spect_one_sided" -->
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<dd>
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<p>Similar to <a href="#label-7">spect_zero_centering</a> but to make one-sided spectra.
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Namely, to convert from 0..K-1 to 0..K/2. To be applied for spectra;
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wavenumber 2..K/2-1 are multiplied by 2.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim (integer): the dimension you want to shift spectra elements.
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Count starts from zero.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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</ul>
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<p>EXAMPLE</p>
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<ul>
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<li>See the 2nd example of <a href="#label-7">spect_zero_centering</a>.</li>
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</ul></dd>
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<dt><h4><a name="label-9" id="label-9"><code>rawspect2powerspect(*<var>dims</var>)</code></a></h4></dt><!-- RDLabel: "rawspect2powerspect" -->
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<dd>
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<p>Converts raw spectra obtained by gphys.fft.abs**2 into
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power spectra by dividing by wavenumber increments
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along the dimensions specified by dims.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dims (integers): the dimensions corresponding to wavenumbers.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a GPhys</li>
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</ul>
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<p>EXAMPLE</p>
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<ul>
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<li><p>Suppose a 2 (or more) dimensional data gphys.</p>
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<pre>fc = gphys.fft(nil, 0, 1)
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sp = fc.abs**2
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ps = sp.rawspect2powerspect(0,1)</pre>
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<p>Here, sp is the raw spectrum of gphys, and ps is the power spectrum.
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The Parseval relation for them are as follows:</p>
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<pre>(gphys**2).mean == sp.sum
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== pw.sum*dk*dl (== \int pw dk dl, mathematically),</pre>
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<p>where, dk = (pw.coord(0)[1] - pw.coord(0)[0]), and
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dl = (pw.coord(1)[1] - pw.coord(1)[0]).</p></li>
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</ul></dd>
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<dt><h4><a name="label-10" id="label-10"><code>phase_velocity_filter(<var>xdim</var>, <var>tdim</var>, <var>cmin</var>=<var>nil</var>, <var>cmax</var>=<var>nil</var>, <var>xconv</var>=<var>nil</var>, <var>tconv</var>=<var>nil</var>, <var>remove_xtmean</var>=<var>false</var>)</code></a></h4></dt><!-- RDLabel: "phase_velocity_filter" -->
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<dd>
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<p>Filtering by phase velocity (between cmin and cmax)</p>
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<p>REMARKS</p>
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<ul>
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<li>If the number of the grid points along x or t is an even number,
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the maximum wavenumber or frequency is treated as positive
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and negative, respectively, which results in an asymmetry of
|
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the treatment of positive and negative phase speeds.
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(That should be ok. -- In case its effect is significant,
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to do the filtering itself is not meaningful.)</li>
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</ul>
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<p>ARGUMENTS</p>
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<ul>
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<li>xdim (Integer or String): spacial dimension</li>
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<li>tdim (Integer or String): time dimension</li>
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<li>cmin (Float or nil): minimum phase velocity. nil means no specification.
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(at least cmin or cmax must be given by Float)</li>
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<li>cmax (Float or nil): maximum phase velocity. nil means no specification.
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(at least cmin or cmax must be given by Float)</li>
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<li>xconv (nil or UNumeric) : (optional) if given, xconv is multiplied
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with the x axis before computing the phase velocity
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(kconv=1/xconv is used to scale wavenumbers)</li>
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<li>tconv (nil or UNumeric) : (optional) if given, tconv is multiplied
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with the t axis before computing the phase velocity
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(fconv=1/tconv is used to scale frequency)</li>
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<li>remove_xtmean (false or true) : if false (default),
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components with k=0 and f=0 are counted as c=0 (stationary),
|
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(unlike <a href="#label-12">phase_velocity_binning</a>), so they are included if
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cmin*cmax <= 0; if true, k=0 & f=0 components are always removed.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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220
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<li>a GPhys</li>
|
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</ul>
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<p>EXAMPLE</p>
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<ul>
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224
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<li><p>For a 4D data with [x,y,z,t] dimensions, filtering by the phase
|
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velocity in the y dimension greater than 10.0 (in the unit
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|
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of y/t) can be made by</p>
|
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<pre>cmin = 10.0; cmax = nil
|
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|
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gpfilt = gp.phase_velocity_filter(1, 3, cmin, cmax)</pre></li>
|
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|
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<li><p>For a global data (on the Earth's surface) with
|
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|
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[lon, lat, z, time] axes, where the units of lon is
|
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"degrees" (or "degrees_east" or "radian")
|
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and the units of time is "hours", to filter disturbances
|
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|
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whose zonal phase speed MEASURED AT THE EQUATOR is less or
|
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equal to 30 m/s can be made by</p>
|
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<pre>cmin = -30.0; cmax = 30.0
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xconv = UNumeric[6.37e6, "m"] # Earth's radius (i.e., m/radian)
|
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# This is a special case since "radian" is exceptionally omitted.
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# See the private method __predefined_coord_units_conversion.
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tconv = UNumeric[3.6e3, "s/hours"]
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gpfilt = gp.phase_velocity_filter(1, 3, cmin, cmax, xconv, tconv)</pre></li>
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|
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</ul></dd>
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|
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<dt><h4><a name="label-11" id="label-11"><code>phase_velocity_binning_iso_norml(<var>kdim</var>, <var>fdim</var>, <var>cmin</var>, <var>cmax</var>, <var>cint</var>, <var>kconv</var>=<var>nil</var>, <var>fconv</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "phase_velocity_binning_iso_norml" -->
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<dd>
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<p>Same as <a href="#label-12">phase_velocity_binning</a> but exclusively for
|
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|
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equal phase velocity spacing. Also, a normalization is
|
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|
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additionally made, to scale spectra in terms of integration
|
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|
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along phase velocity axis --- The result of
|
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|
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<a href="#label-12">phase_velocity_binning</a> called inside
|
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|
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this method is divided by cint along with corresponding
|
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|
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units conversion. Therefore, if this method is applied
|
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to spectra, a normalization is made such that an integration
|
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|
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(not summation) along the phase velocity gives the variance
|
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|
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(or covariance etc.) -- This normalization is suitable to
|
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|
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quadratic quantities (such as spectra) but is not suitable to
|
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raw Fourier coefficients.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>kdim (Integer or String): see <a href="#label-12">phase_velocity_binning</a></li>
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<li>fdim (Integer or String): see <a href="#label-12">phase_velocity_binning</a></li>
|
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<li>cmin (Float) : minimum phase velocity</li>
|
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<li>cmin (Float) : maximum phase velocity</li>
|
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<li>cint (Float) : inter val with which the range [cmin and cmax]
|
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|
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is divided.</li>
|
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|
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<li>kconv (nil or UNumeric) : see <a href="#label-12">phase_velocity_binning</a></li>
|
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|
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<li>fconv (nil or UNumeric) : see <a href="#label-12">phase_velocity_binning</a></li>
|
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|
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</ul>
|
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|
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<p>RETURN VALUE</p>
|
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|
+
<ul>
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|
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|
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<li>a GPhys</li>
|
|
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|
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</ul></dd>
|
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|
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<dt><h4><a name="label-12" id="label-12"><code>phase_velocity_binning(<var>kdim</var>, <var>fdim</var>, <var>cbins</var>, <var>kconv</var>=<var>nil</var>, <var>fconv</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "phase_velocity_binning" -->
|
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|
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<dd>
|
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|
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<p>Bin a 2D spectrum in space and time based on phase velocity.
|
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|
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The operand (self) must be Fourier coefficients or spectra,
|
|
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|
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whose grid has not been altered since the call of the method
|
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|
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fft (i.e., those that have not applied with zero centering
|
|
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|
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etc, since it is done in this method).</p>
|
|
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|
+
<p>Binning by this method is based on summation, leaving
|
|
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|
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the units unchanged.</p>
|
|
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|
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<p>REMARKS</p>
|
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|
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<ul>
|
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|
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<li>Components whose phase velocities are exactly equal to one
|
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|
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of the boundaries are divided into the two bins half by half</li>
|
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|
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<li>components with k=0 and f=0 are excluded -- the spatio-temporal
|
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|
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mean do not reflect in the result </li>
|
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|
+
</ul>
|
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|
+
<p>ARGUMENTS</p>
|
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|
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<ul>
|
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|
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<li>kdim (Integer or String): wavenumber dimension (from spacial dimension)</li>
|
|
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|
+
<li>fdim (Integer or String): frequency dimension (from time dimension)</li>
|
|
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|
+
<li>cbins : an Array of bin bounds or a Hash of max, min, int
|
|
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|
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e.g., [-10,-1,-0.1,0.1,11,10], {"min"=>-30,"max"=>30,"int"=>5}</li>
|
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|
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<li>kconv (nil or UNumeric) : (optional) if given, kconv is multiplied
|
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|
+
with the wavenumber axis before computing the phase velocity</li>
|
|
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|
+
<li>fconv (nil or UNumeric) : (optional) if given, fconv is multiplied
|
|
296
|
+
with the frequency axis before computing the phase velocity</li>
|
|
297
|
+
</ul>
|
|
298
|
+
<p>RETURN VALUE</p>
|
|
299
|
+
<ul>
|
|
300
|
+
<li>a GPhys</li>
|
|
301
|
+
</ul>
|
|
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|
+
<p>EXAMPLES</p>
|
|
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|
+
<ul>
|
|
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|
+
<li><p>Example A</p>
|
|
305
|
+
<pre>fu = u.fft(nil, 0, 2)
|
|
306
|
+
cfu = fu.phase_velocity_binning(0, 2, {"min"=>-1,"max"=>1,"int"=>0.1})</pre></li>
|
|
307
|
+
<li><p>Example B</p>
|
|
308
|
+
<pre>fu = u.fft(nil, 0, 2)
|
|
309
|
+
pw = fu.abs**2rawspect2powerspect(0,2) # power spectrum
|
|
310
|
+
cbins = [-100.0, -10.0, -1.0, 1.0, 10.0, 100.0] # logarithmic spacing
|
|
311
|
+
cpw = pw.phase_velocity_binning(0, 2, cbins)</pre></li>
|
|
312
|
+
<li><p>Example C</p>
|
|
313
|
+
<pre>fu = u.fft(nil, 0, 3)
|
|
314
|
+
fv = v.fft(nil, 0, 3)
|
|
315
|
+
kconv = UNumeric[1/6.37e6, "m-1"]
|
|
316
|
+
fconv = UNumeric[1/3.6e3, "hours/s"]
|
|
317
|
+
fuv = (fu * fv.conj) # cross spectra
|
|
318
|
+
cfuv = fuv.phase_velocity_binning(0, 3, {"min"=>-50,"max"=>50,"int"=>5},
|
|
319
|
+
kconv, fconv)</pre></li>
|
|
320
|
+
</ul></dd>
|
|
321
|
+
</dl>
|
|
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|
+
|
|
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|
+
</body>
|
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|
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</html>
|
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@@ -0,0 +1,69 @@
|
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|
+
<?xml version="1.0" ?>
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+
<!DOCTYPE html
|
|
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|
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
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<html xmlns="http://www.w3.org/1999/xhtml">
|
|
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|
+
<head>
|
|
7
|
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<title>../lib/numru/gphys/gphys_grads_io.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label-0" id="label-0">module NumRu::GPhys::GrADS_IO</a></h1><!-- RDLabel: "module NumRu::GPhys::GrADS_IO" -->
|
|
11
|
+
<p>helps read/write GrADS-formatted data</p>
|
|
12
|
+
<h2><a name="label-1" id="label-1">Module functions</a></h2><!-- RDLabel: "Module functions" -->
|
|
13
|
+
<dl>
|
|
14
|
+
<dt><h4><a name="label-2" id="label-2"><code>is_a_GrADS?(<var>filename</var>)</code></a></h4></dt><!-- RDLabel: "is_a_GrADS?" -->
|
|
15
|
+
<dd>
|
|
16
|
+
<p>test whether the file is a GrADS control file.</p>
|
|
17
|
+
<p>ARGUMENTS</p>
|
|
18
|
+
<ul>
|
|
19
|
+
<li>filename (String): filename to test.</li>
|
|
20
|
+
</ul>
|
|
21
|
+
<p>RETURN VALUE</p>
|
|
22
|
+
<ul>
|
|
23
|
+
<li>true/false</li>
|
|
24
|
+
</ul></dd>
|
|
25
|
+
<dt><h4><a name="label-3" id="label-3"><code>open(<var>file</var>, <var>varname</var>)</code></a></h4></dt><!-- RDLabel: "open" -->
|
|
26
|
+
<dd>
|
|
27
|
+
<p>GPhys constructor from GrADS.</p>
|
|
28
|
+
<p>ARGUMENTS</p>
|
|
29
|
+
<ul>
|
|
30
|
+
<li>file (GrADS_Gridded or String): file to read. If string,
|
|
31
|
+
it must be the name (path) of a GrADS control file. </li>
|
|
32
|
+
<li>varname (String): name of the varible in the file, for which
|
|
33
|
+
a GPhys object is constructed.</li>
|
|
34
|
+
</ul>
|
|
35
|
+
<p>RETURN VALUE</p>
|
|
36
|
+
<ul>
|
|
37
|
+
<li>a GPhys</li>
|
|
38
|
+
</ul>
|
|
39
|
+
<p>EXAMPLE</p>
|
|
40
|
+
<ul>
|
|
41
|
+
<li><p>Suppose that you have a file T.jan.ctl in the currentdirectly,
|
|
42
|
+
and it contains a variable "T". The following creates a GPhys
|
|
43
|
+
object representing the variable in the file.</p>
|
|
44
|
+
<pre>require "numru/gphys"
|
|
45
|
+
include GPhys
|
|
46
|
+
temp = GPhys::GrADS_IO.open("T.jan.ctl","T")</pre></li>
|
|
47
|
+
</ul></dd>
|
|
48
|
+
<dt><h4><a name="label-4" id="label-4"><code>write(<var>file</var>, <var>gphys</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "write" -->
|
|
49
|
+
<dd>
|
|
50
|
+
writes a GPhys object into a GrADS file. -- !!only 4D data is supported!!</dd>
|
|
51
|
+
<dt><h4><a name="label-5" id="label-5"><code>var_names(<var>file</var>)</code></a></h4></dt><!-- RDLabel: "var_names" -->
|
|
52
|
+
<dd>
|
|
53
|
+
<p>ARGUMENTS</p>
|
|
54
|
+
<ul>
|
|
55
|
+
<li>file (GrADS_Gridded or String): if string,
|
|
56
|
+
it must be the name (path) of a GrADS control file.</li>
|
|
57
|
+
</ul>
|
|
58
|
+
<p>RETURN VALUE</p>
|
|
59
|
+
<ul>
|
|
60
|
+
<li>names of variables (Array): this return the names of variables
|
|
61
|
+
which the file has.</li>
|
|
62
|
+
</ul></dd>
|
|
63
|
+
<dt><h4><a name="label-6" id="label-6"><code>var_names_except_coordinates(<var>file</var>)</code></a></h4></dt><!-- RDLabel: "var_names_except_coordinates" -->
|
|
64
|
+
<dd>
|
|
65
|
+
same as var_names</dd>
|
|
66
|
+
</dl>
|
|
67
|
+
|
|
68
|
+
</body>
|
|
69
|
+
</html>
|
|
@@ -0,0 +1,82 @@
|
|
|
1
|
+
<?xml version="1.0" ?>
|
|
2
|
+
<!DOCTYPE html
|
|
3
|
+
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
4
|
+
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
5
|
+
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
6
|
+
<head>
|
|
7
|
+
<title>../lib/numru/gphys/gphys_grib_io.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label-0" id="label-0">module NumRu::GPhys::Grib_IO</a></h1><!-- RDLabel: "module NumRu::GPhys::Grib_IO" -->
|
|
11
|
+
<p>helps read Grib-formatted data</p>
|
|
12
|
+
<h2><a name="label-1" id="label-1">Module functions</a></h2><!-- RDLabel: "Module functions" -->
|
|
13
|
+
<dl>
|
|
14
|
+
<dt><h4><a name="label-2" id="label-2"><code>is_a_Grib? <var>filename</var>)</code></a></h4></dt><!-- RDLabel: "is_a_Grib? filename)" -->
|
|
15
|
+
<dd>
|
|
16
|
+
<p>test whether the file is a Grib file.</p>
|
|
17
|
+
<p>ARGUMENTS</p>
|
|
18
|
+
<ul>
|
|
19
|
+
<li>filename (String): filename to test.</li>
|
|
20
|
+
</ul>
|
|
21
|
+
<p>RETURN VALUE</p>
|
|
22
|
+
<ul>
|
|
23
|
+
<li>true/false</li>
|
|
24
|
+
</ul></dd>
|
|
25
|
+
<dt><h4><a name="label-3" id="label-3"><code>open(<var>file</var>, <var>varname</var>)</code></a></h4></dt><!-- RDLabel: "open" -->
|
|
26
|
+
<dd>
|
|
27
|
+
<p>GPhys constructor from Grib.</p>
|
|
28
|
+
<p>ARGUMENTS</p>
|
|
29
|
+
<ul>
|
|
30
|
+
<li>file (Grib or String): file to read. If string,
|
|
31
|
+
it must be the name (path) of a Grib file. </li>
|
|
32
|
+
<li>varname (String): name of the varible in the file, for which
|
|
33
|
+
a GPhys object is constructed.</li>
|
|
34
|
+
</ul>
|
|
35
|
+
<p>RETURN VALUE</p>
|
|
36
|
+
<ul>
|
|
37
|
+
<li>a GPhys</li>
|
|
38
|
+
</ul>
|
|
39
|
+
<p>EXAMPLE</p>
|
|
40
|
+
<ul>
|
|
41
|
+
<li><p>Suppose that you have a file temp in the currentdirectly,
|
|
42
|
+
and it contains a variable "T". The following creates a GPhys
|
|
43
|
+
object representing the variable in the file.</p>
|
|
44
|
+
<pre>require "numru/gphys"
|
|
45
|
+
include GPhys
|
|
46
|
+
temp = GPhys::Grib_IO.open("temp","T")</pre></li>
|
|
47
|
+
</ul></dd>
|
|
48
|
+
<dt><h4><a name="label-4" id="label-4"><code>write(<var>file</var>, <var>gphys</var>, <var>name_dummy</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "write" -->
|
|
49
|
+
<dd>
|
|
50
|
+
<p>Write a GPhys into a Grib file. The whole data under the GPhys
|
|
51
|
+
(such as coordinate vars) are written self-descriptively.</p>
|
|
52
|
+
<p>ARGUMENTS</p>
|
|
53
|
+
<ul>
|
|
54
|
+
<li>file (Grib): the Grib file to write in. Must be writable of course.</li>
|
|
55
|
+
<li>gphys (GPhys): the GPhys to write.</li>
|
|
56
|
+
<li>name_dummy (nil) : Unused in this module; Just for consistency with others.</li>
|
|
57
|
+
</ul>
|
|
58
|
+
<p>RETURN VALUE</p>
|
|
59
|
+
<ul>
|
|
60
|
+
<li>nil</li>
|
|
61
|
+
</ul></dd>
|
|
62
|
+
<dt><h4><a name="label-5" id="label-5"><code>var_names(<var>file</var>)</code></a></h4></dt><!-- RDLabel: "var_names" -->
|
|
63
|
+
<dd>
|
|
64
|
+
<p>ARGUMENTS</p>
|
|
65
|
+
<ul>
|
|
66
|
+
<li>file (Grib or String): if string,
|
|
67
|
+
it must be the name (path) of a Grib file.</li>
|
|
68
|
+
</ul>
|
|
69
|
+
<p>RETURN VALUE</p>
|
|
70
|
+
<ul>
|
|
71
|
+
<li>names of variables (Array): this return the names of variables
|
|
72
|
+
which the file has.</li>
|
|
73
|
+
</ul></dd>
|
|
74
|
+
<dt><h4><a name="label-6" id="label-6"><code>var_names_except_coordinates(<var>file</var>)</code></a></h4></dt><!-- RDLabel: "var_names_except_coordinates" -->
|
|
75
|
+
<dd>
|
|
76
|
+
<ul>
|
|
77
|
+
<li>same as var_names</li>
|
|
78
|
+
</ul></dd>
|
|
79
|
+
</dl>
|
|
80
|
+
|
|
81
|
+
</body>
|
|
82
|
+
</html>
|