gphys 1.2.2.1 → 1.4.3
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- checksums.yaml +7 -0
- data/.gitignore +8 -17
- data/.rspec +2 -0
- data/.travis.yml +3 -0
- data/ChangeLog +5762 -753
- data/LICENSE.txt +30 -18
- data/Rakefile +1 -0
- data/bin/console +14 -0
- data/bin/gpcat +43 -2
- data/bin/gpcut +16 -0
- data/bin/gpvect +167 -15
- data/bin/gpview +254 -51
- data/bin/setup +7 -0
- data/dim_op.c +1220 -0
- data/doc/attribute.html +19 -0
- data/doc/attributenetcdf.html +15 -0
- data/doc/axis.html +387 -0
- data/doc/coordmapping.html +111 -0
- data/doc/coordtransform.html +36 -0
- data/doc/dclext.html +821 -0
- data/doc/derivative/gphys-derivative.html +100 -0
- data/doc/derivative/index.html +21 -0
- data/doc/derivative/index.rd +14 -0
- data/doc/derivative/math-doc/document.pdf +0 -0
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- data/doc/derivative/numru-derivative.html +158 -0
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- data/ext_init.c +1 -0
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- data/lib/numru/dclext.rb +718 -546
- data/lib/numru/derivative.rb +2 -0
- data/lib/numru/ganalysis.rb +38 -0
- data/lib/numru/ganalysis/beta_plane.rb +103 -0
- data/lib/numru/ganalysis/eof.rb +3 -2
- data/lib/numru/ganalysis/fitting.rb +559 -0
- data/lib/numru/ganalysis/histogram.rb +36 -19
- data/lib/numru/ganalysis/log_p.rb +130 -0
- data/lib/numru/ganalysis/met.rb +396 -2
- data/lib/numru/ganalysis/met_z.rb +300 -0
- data/lib/numru/ganalysis/planet.rb +17 -7
- data/lib/numru/ganalysis/qg.rb +685 -0
- data/lib/numru/ganalysis/sigma_coord.rb +90 -0
- data/lib/numru/gdir.rb +2 -1
- data/lib/numru/ggraph.rb +204 -60
- data/lib/numru/ggraph_on_merdional_section.rb +1 -1
- data/lib/numru/gphys.rb +6 -0
- data/lib/numru/gphys/assoccoords.rb +18 -3
- data/lib/numru/gphys/axis.rb +209 -8
- data/lib/numru/gphys/derivative.rb +11 -0
- data/lib/numru/gphys/gphys.rb +539 -48
- data/lib/numru/gphys/gphys_dim_op.rb +331 -0
- data/lib/numru/gphys/gphys_fft.rb +48 -2
- data/lib/numru/gphys/gphys_io.rb +241 -13
- data/lib/numru/gphys/gphys_netcdf_io.rb +77 -39
- data/lib/numru/gphys/gphys_nusdas_io.rb +3 -0
- data/lib/numru/gphys/grib.rb +133 -54
- data/lib/numru/gphys/grib_params.rb +26 -3
- data/lib/numru/gphys/grid.rb +75 -34
- data/lib/numru/gphys/interpolate.rb +24 -10
- data/lib/numru/gphys/mdstorage.rb +160 -0
- data/lib/numru/gphys/netcdf_convention.rb +4 -2
- data/lib/numru/gphys/subsetmapping.rb +0 -1
- data/lib/numru/gphys/unumeric.rb +50 -5
- data/lib/numru/gphys/varray.rb +15 -30
- data/lib/numru/gphys/varraycomposite.rb +107 -24
- data/lib/numru/gphys/varraynetcdf.rb +9 -3
- data/lib/numru/gphys/version.rb +5 -0
- data/sample/druby_cli1.rb +2 -0
- data/sample/druby_cli2.rb +0 -6
- data/sample/druby_serv2.rb +0 -13
- data/spec/gphys_spec.rb +11 -0
- data/spec/spec_helper.rb +2 -0
- data/test/test_assoccoords.rb +102 -0
- data/test/test_axis.rb +61 -0
- data/test/test_fitting.rb +116 -0
- data/test/test_gphys.rb +20 -0
- data/test/test_met_z.rb +96 -0
- data/test/test_sigma_coord.rb +50 -0
- data/{test → test_old}/eof_slp.rb +0 -0
- data/{test → test_old}/mltbit.dat +0 -0
- data/{test → test_old}/test_ep_flux.rb +0 -0
- data/{test → test_old}/test_multibitIO.rb +0 -0
- metadata +530 -191
- data/README.md +0 -29
- data/lib/gphys.rb +0 -2
- data/lib/numru/dclext_datetime_ax.rb +0 -220
- data/lib/version.rb +0 -3
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<head>
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<title>../../lib/numru/derivative.rb</title>
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</head>
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<body>
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<h1><a name="label-0" id="label-0">module NumRu::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::Derivative in derivative.rb" -->
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<h2><a name="label-1" id="label-1">todo</a></h2><!-- RDLabel: "todo" -->
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<ul>
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<li>decide argument of b_expand_linear_ext is Symbol or Numeric.
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<ul>
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<li>now is Numeric.</li>
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<li>it denpends the treatment of dRuby.</li>
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</ul></li>
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<li>support other boundary conditions.</li>
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</ul>
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<h2><a name="label-2" id="label-2">Index</a></h2><!-- RDLabel: "Index" -->
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<ul>
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<li><a href="#label-3">module NumRu::Derivative</a>
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<ul>
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<li><a href="#label-4">threepoint_O2nd_deriv</a>
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<ul>
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<li>First derivative (2nd Order difference use three point.)</li>
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</ul></li>
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<li><a href="#label-5">cderiv</a>
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<ul>
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<li>First derivative (center difference use two point.)</li>
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</ul></li>
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<li><!-- Reference, RDLabel "deriv2d" doesn't exist --><em class="label-not-found">deriv2d</em><!-- Reference end -->
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<ul>
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<li>2nd derivative</li>
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</ul></li>
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<li><a href="#label-7">b_expand_linear_ext</a>
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<ul>
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<li>return array extended boundaries with linear extention.</li>
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</ul></li>
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<li><a href="#label-8">cdiff</a>
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<ul>
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<li>return difference. (center difference)</li>
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</ul></li>
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</ul></li>
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</ul>
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<h1><a name="label-3" id="label-3">module NumRu::Derivative</a></h1><!-- RDLabel: "module NumRu::Derivative" -->
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<p>Module functions of Derivative Operater for NArray.</p>
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<dl>
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<dt><h4><a name="label-4" id="label-4"><code>threepoint_O2nd_deriv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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<dd>
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<p>Derivate of <code>z</code> with respect to <code>dim</code> th dim using a 2nd
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order 3-point differentiation valid for non-uniform grid: </p>
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<pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</pre>
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<p>Here, s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
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and _{i} represents the suffix of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th
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dimension of the array. ).</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>z (NArray): a NArray which you want to derivative.</li>
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<li>x (NArray): a NArray represents the dimension which derivative respect to.
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z.rank must be 1.</li>
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<li>dim (Numeric): a Numeric represents the dimention which derivative respect to.
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you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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<li>bc (Numeric) : a Numeric to represent boundary condition.
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Supported conditions are expressed in terms of boundary extension
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applied before differentiation:
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<ul>
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<li>LINEAR_EXT(=1): default value. linear extension using two
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grid points at the boundaries.</li>
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<li>CYCLIC_EXT(=2): cyclic extension as k,0,1,..,k,0 for indices 0,1,..,k</li>
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<li>MIRROR_A(=3): for indices 0,1,..,k, extends as 0,0,1,..,k,k
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(good for cell interior values with the Neumann condition)</li>
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<li>MIRROR_B(=4): for indices 0,1,..,k, extends as 1,0,1,..,k,k-1
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(good for cell boundary values with the Neumann condition)</li>
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</ul></li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>O2nd_deriv_data (NArray): (s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
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</ul></dd>
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<dt><h4><a name="label-5" id="label-5"><code>cderiv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "cderiv" -->
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<dd>
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<p>Derivate of <code>z</code> with respect to <code>dim</code> th dim using centeral
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differenciation: (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>z (NArray): a NArray which you want to derivative.</li>
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<li>x (NArray): a NArray represents the dimension which derivative respect
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to. z.rank must be 1.</li>
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<li>dim (Numeric): a Numeric represents the dimention which derivative
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respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but
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<!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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<li>bc (Numeric) : a Numeric to represent boundary condition.
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See <a href="#label-4">threepoint_O2nd_deriv</a> for supported conditions.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>cderiv_data (NArray): (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</li>
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</ul></dd>
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<dt><h4><a name="label-6" id="label-6"><code>deriv2nd(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "deriv2nd" -->
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<dd>
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<p>2nd Derivate of <code>z</code> with respect to <code>dim</code>-th dim
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covering non-uniform grids. Based on:</p>
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<pre>( (z_{i+1}-z_{i})/(x_{i+1}-x_{i}) - (z_{i}-z_{i-1})/(x_{i}-x_{i-1}) )
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/ ((x_{i+1}-x_{i-1})/2)</pre>
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<p>ARGUMENTS</p>
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<ul>
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<li>z (NArray): a NArray which you want to derivative.</li>
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<li>x (NArray): a NArray represents the dimension which derivative respect
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to. z.rank must be 1.</li>
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<li>dim (Numeric): a Numeric represents the dimention which derivative
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respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but
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<!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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<li>bc (Numeric) : a Numeric to represent boundary condition.
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See <a href="#label-4">threepoint_O2nd_deriv</a> for supported conditions.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>cderiv_data (NArray): (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</li>
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</ul></dd>
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<dt><h4><a name="label-7" id="label-7"><code>b_expand_linear_ext(<var>z</var>, <var>dim</var>)</code></a></h4></dt><!-- RDLabel: "b_expand_linear_ext" -->
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<dd>
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<p>expand boundary with linear value. extend array with 1 grid at each
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boundary with <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension, and assign th value which diffrential
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value between a grid short of boundary and boundary grid in original array.
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(on other wards, 2*z_{0}-z_{1} or 2*z_{n-1}-z_{n-2}: now _{i} represents the </p>
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<pre>suffix of {i} th element in the ((<dim>)) th dimension of array. ).</pre>
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<p>ARGUMENTS</p>
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<ul>
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<li>z (NArray): a NArray which you want to expand boundary.</li>
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<li>dim (Numeric): a Numeric represents the dimention which derivative
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respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but
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<!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>expand_data (NArray): </li>
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</ul></dd>
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<dt><h4><a name="label-8" id="label-8"><code>cdiff(<var>x</var>, <var>dim</var>)</code></a></h4></dt><!-- RDLabel: "cdiff" -->
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<dd>
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<p>Diffrence operater. return an NArray which a difference <!-- Reference, RDLabel "x" doesn't exist --><em class="label-not-found">x</em><!-- Reference end -->
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( in other wards, (x_{i+1} - x_{i-1}): now _{i} represents the suffix of
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{i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension of array. ).</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>x (NArray): a NArray which you want to get difference.</li>
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<li>dim (Numeric): a Numeric representing the dimention which derivative
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respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --><0), but
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<!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be > 0. </li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>cdiff_data (NArray): (x_{i+1} - x_{i-1})</li>
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</ul></dd>
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</dl>
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<title>../../lib/numru/gphys/ep_flux.rb</title>
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</head>
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<body>
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<h1><a name="label:0" id="label:0">module NumRu::GPhys::EP_Flux in ep_flux.</a></h1><!-- RDLabel: "module NumRu::GPhys::EP_Flux in ep_flux." -->
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<h2><a name="label:1" id="label:1">Testprogram</a></h2><!-- RDLabel: "Testprogram" -->
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<p>Test script path is 'test/test_ep_flux.rb' in expand dir of gphys.tar.gz.</p>
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<h2><a name="label:2" id="label:2">Index</a></h2><!-- RDLabel: "Index" -->
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<ul>
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<li><a href="#label:3">module NumRu::GPhys::EP_Flux</a>
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<ul>
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<li><a href="#label:4">Functions:</a>
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<ul>
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<li><a href="#label:5">ep_full_sphere</a>
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<ul>
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<li>calculate EP Flux with full set equations on spherical coordinate.</li>
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</ul></li>
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<li><a href="#label:6">div_sphere</a>
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<ul>
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<li>calculate divergence on spherical coordinate, Not only for EP Flux!</li>
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</ul></li>
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<li><a href="#label:34">strm_rmean</a>
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<ul>
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<li>calculate residual mass stream function in spherical coordinate
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(it might be good precision, but enough test has not done yet.)</li>
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</ul></li>
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<li><a href="#label:9">scale_height</a>
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<ul>
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<li>get the scale height.</li>
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</ul></li>
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<li><a href="#label:10">scale_height=</a>
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<ul>
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<li>set the scale height.</li>
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</ul></li>
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<li><a href="#label:11">radius</a>
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<ul>
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<li>get the radus of planet.</li>
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</ul></li>
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<li><a href="#label:12">radius=</a>
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<ul>
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<li>set the radus of planet.</li>
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</ul></li>
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<li><a href="#label:13">rot_period</a>
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<ul>
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<li>get the rotation period of planet.</li>
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</ul></li>
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<li><a href="#label:14">rot_period=</a>
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<ul>
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<li>set the rotation period of planet.</li>
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</ul></li>
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<li><a href="#label:15">g_forces</a>
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<ul>
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<li>get the gravitational acceleration in surface.</li>
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</ul></li>
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<li><a href="#label:16">g_forces=</a>
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<ul>
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<li>set the gravitational acceleration in surface.</li>
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</ul></li>
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<li><a href="#label:17">p00</a>
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<ul>
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<li>get the reference surface pressure.</li>
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</ul></li>
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<li><a href="#label:18">p00=</a>
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<ul>
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<li>set the reference surface pressure.</li>
|
71
|
+
</ul></li>
|
72
|
+
<li><a href="#label:19">cp</a>
|
73
|
+
<ul>
|
74
|
+
<li>get the the specific heat at constant pressure of the atmosphere.</li>
|
75
|
+
</ul></li>
|
76
|
+
<li><a href="#label:20">cp=</a>
|
77
|
+
<ul>
|
78
|
+
<li>set the the specific heat at constant pressure of the atmosphere.</li>
|
79
|
+
</ul></li>
|
80
|
+
<li><a href="#label:21">gas_const</a>
|
81
|
+
<ul>
|
82
|
+
<li>get the specific heat at constant pressure of the atmosphere.</li>
|
83
|
+
</ul></li>
|
84
|
+
<li><a href="#label:22">gas_const=</a>
|
85
|
+
<ul>
|
86
|
+
<li>set the specific heat at constant pressure of the atmosphere.</li>
|
87
|
+
</ul></li>
|
88
|
+
<li><a href="#label:23">get_constants</a>
|
89
|
+
<ul>
|
90
|
+
<li>get the module variables</li>
|
91
|
+
</ul></li>
|
92
|
+
<li><a href="#label:24">set_constants</a>
|
93
|
+
<ul>
|
94
|
+
<li>set the module variables</li>
|
95
|
+
</ul></li>
|
96
|
+
<li><a href="#label:25">make_gphys</a>
|
97
|
+
<ul>
|
98
|
+
<li>convert <!-- Reference, RDLabel "Axis" doesn't exist --><em class="label-not-found">Axis</em><!-- Reference end --> to <!-- Reference, RDLabel "GPhys" doesn't exist --><em class="label-not-found">GPhys</em><!-- Reference end -->.</li>
|
99
|
+
</ul></li>
|
100
|
+
<li><a href="#label:26">to_w_if_omega</a>
|
101
|
+
<ul>
|
102
|
+
<li>convert to velocity if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure velocity.</li>
|
103
|
+
</ul></li>
|
104
|
+
<li><a href="#label:27">to_z_if_pressure</a>
|
105
|
+
<ul>
|
106
|
+
<li>convert to altitude if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure.</li>
|
107
|
+
</ul></li>
|
108
|
+
<li><a href="#label:28">to_p_if_altitude</a>
|
109
|
+
<ul>
|
110
|
+
<li>convert to pressure if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is altitude.</li>
|
111
|
+
</ul></li>
|
112
|
+
<li><a href="#label:29">to_theta_if_temperature</a>
|
113
|
+
<ul>
|
114
|
+
<li>convert to potential temperature of temperature if <!-- Reference, RDLabel "flag" doesn't exist --><em class="label-not-found">flag</em><!-- Reference end --> is true.</li>
|
115
|
+
</ul></li>
|
116
|
+
<li><a href="#label:30">to_rad_if_deg</a>
|
117
|
+
<ul>
|
118
|
+
<li>convert to radian if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is degrees.</li>
|
119
|
+
</ul></li>
|
120
|
+
<li><a href="#label:31">eddy_products</a>
|
121
|
+
<ul>
|
122
|
+
<li>calculate eddy flux respect to <!-- Reference, RDLabel "dimname" doesn't exist --><em class="label-not-found">dimname</em><!-- Reference end -->.</li>
|
123
|
+
</ul></li>
|
124
|
+
<li><a href="#label:32">remove_0_at_poles</a>
|
125
|
+
<ul>
|
126
|
+
<li>set value if the cos(phi) is 0 at poles (phi is latitude).</li>
|
127
|
+
</ul></li>
|
128
|
+
<li><a href="#label:33">preparate_for_vector_on_merdional_section</a>
|
129
|
+
<ul>
|
130
|
+
<li>preparate for <!-- Reference, RDLabel "GGraph::vector_on_merdional_section" doesn't exist --><em class="label-not-found">GGraph::vector_on_merdional_section</em><!-- Reference end -->
|
131
|
+
in vector_on_merdional_section.rb</li>
|
132
|
+
</ul></li>
|
133
|
+
</ul></li>
|
134
|
+
<li><a href="#label:35">Constants:</a>
|
135
|
+
<ul>
|
136
|
+
<li><a href="#label:36">Deriv_methods</a>
|
137
|
+
<ul>
|
138
|
+
<li>derivative method names.</li>
|
139
|
+
</ul></li>
|
140
|
+
</ul></li>
|
141
|
+
</ul></li>
|
142
|
+
</ul>
|
143
|
+
<h1><a name="label:3" id="label:3">module NumRu::GPhys::EP_Flux</a></h1><!-- RDLabel: "module NumRu::GPhys::EP_Flux" -->
|
144
|
+
<p>Module functions of EP_Flux Operater for GPhys.</p>
|
145
|
+
<h2><a name="label:4" id="label:4">Functions:</a></h2><!-- RDLabel: "Functions:" -->
|
146
|
+
<dl>
|
147
|
+
<dt><a name="label:5" id="label:5"><code>ep_full_sphere(<var>gp_u</var>, <var>gp_v</var>, <var>gp_w_or_omega</var>, <var>gp_temp_or_theta</var>, <var>flag_temp_or_theta</var>, <var>xyzdims</var>=[<var>0</var>,<var>1</var>,<var>2</var>])</code></a></dt><!-- RDLabel: "ep_full_sphere" -->
|
148
|
+
<dd>
|
149
|
+
<p>Calculate Eliassen-Palm Flux(EP-Flux) from full set equations on the
|
150
|
+
spherical coordinate. this method calculates EP-Flux from 4 GPhys objects,
|
151
|
+
zonal-wind velocity(U), merdional-wind velocity(V), vertical-wind velocity(W)
|
152
|
+
or pressure velocity(Omega), and temperature(T) or potential(Theta)
|
153
|
+
temperature. check the equations on documents. </p>
|
154
|
+
<p>Furthermore, Residual mean merdional circulation (0, v*, w*) can be calculated.</p>
|
155
|
+
<p>ARGUMENTS</p>
|
156
|
+
<ul>
|
157
|
+
<li>gp_u (GPhys): a GPhys which data is U.</li>
|
158
|
+
<li>gp_v (GPhys): a GPhys which data is V.</li>
|
159
|
+
<li>gp_w_or_omega (GPhys): a GPhys which data is W or Omega. if you give
|
160
|
+
gp_omega, convert to W in this method and calculate EP-Flux.</li>
|
161
|
+
<li>gp_temp_or_theta (GPhys): a GPhys which data is T or Theta.</li>
|
162
|
+
<li><p>xyzdims (Array): an Array which represents location of upper gphyses's </p>
|
163
|
+
<pre>coordinate. if coordinate configuration is
|
164
|
+
(longitude, latitude, z), then xyzdims = [0, 1, 2].
|
165
|
+
else if coordinate configuration is
|
166
|
+
(z, latitude, longitude), then xyzdims = [2, 1, 0].</pre></li>
|
167
|
+
</ul>
|
168
|
+
<p>RETURN VALUE</p>
|
169
|
+
<ul>
|
170
|
+
<li>epflx_y (GPhys): EP-Flux y-component. it is on the merdional hoge.</li>
|
171
|
+
<li>epflx_z (GPhys): EP-Flux z-component.</li>
|
172
|
+
<li>v_rmean (GPhys): residual zonal mean V.</li>
|
173
|
+
<li>w_rmean (GPhys): residual zonal mean W.</li>
|
174
|
+
<li>gp_lat (GPhys): latitude (its units is radian)</li>
|
175
|
+
<li>gp_z (GPhys): from vertical axis (z)</li>
|
176
|
+
<li>u_mean (GPhys): zonal-mean U.</li>
|
177
|
+
<li>theta_mean (GPhys): zonal-mean Theta.</li>
|
178
|
+
<li>uv_dash (GPhys): zonal mean of zonal-eddy products U and V.</li>
|
179
|
+
<li>vt_dash (GPhys): zonal mean of zonal-eddy products V and Theta.</li>
|
180
|
+
<li>uw_dash (GPhys): zonal mean of zonal-eddy products U and W.</li>
|
181
|
+
<li>dtheta_dz (GPhys): zonal mean Theta derivate with z.</li>
|
182
|
+
</ul></dd>
|
183
|
+
<dt><a name="label:6" id="label:6"><code>div_sphere(<var>gp_y</var>, <var>gp_z</var>)</code></a></dt><!-- RDLabel: "div_sphere" -->
|
184
|
+
<dd>
|
185
|
+
<p>Calculate divergence on the spherical coordinate. it is exclusive to in
|
186
|
+
merdional cross section.</p>
|
187
|
+
<p>ARGUMENTS</p>
|
188
|
+
<ul>
|
189
|
+
<li><p>gp_y (GPhys): a GPhys which is merdional component you want to calculate</p>
|
190
|
+
<pre>divergence.</pre></li>
|
191
|
+
<li><p>gp_z (GPhys): a GPhys which is vertical component you want to calculate </p>
|
192
|
+
<pre>divergence.</pre></li>
|
193
|
+
</ul>
|
194
|
+
<p>RETURN VALUE</p>
|
195
|
+
<ul>
|
196
|
+
<li>gp_div (GPhys): a GPhys which is divergence on the spherical coordinate.</li>
|
197
|
+
</ul></dd>
|
198
|
+
<dt><a name="label:7" id="label:7"><code>set_deriv_method( <var>method_name</var> )</code></a></dt><!-- RDLabel: "set_deriv_method" -->
|
199
|
+
<dd>
|
200
|
+
<p>Set derivative method. methods are defined in <!-- Reference, RDLabel "GPhys::derivative" doesn't exist --><em class="label-not-found">GPhys::derivative</em><!-- Reference end -->.
|
201
|
+
Now <!-- Reference, RDLabel "cderiv" doesn't exist --><em class="label-not-found">cderiv</em><!-- Reference end --> and <!-- Reference, RDLabel "threepoint_O2nd_deriv" doesn't exist --><em class="label-not-found">threepoint_O2nd_deriv</em><!-- Reference end --> supported</p>
|
202
|
+
<p>ARGUMENTS</p>
|
203
|
+
<ul>
|
204
|
+
<li>method_name (String): derivative method name.</li>
|
205
|
+
</ul>
|
206
|
+
<p>RETURN VALUE</p>
|
207
|
+
<ul>
|
208
|
+
<li>nil</li>
|
209
|
+
</ul></dd>
|
210
|
+
<dt><a name="label:8" id="label:8"><code>deriv( *<var>args</var> )</code></a></dt><!-- RDLabel: "deriv" -->
|
211
|
+
<dd>
|
212
|
+
<p>Call derivative method defined in <!-- Reference, RDLabel "GPhys::Derivative" doesn't exist --><em class="label-not-found">GPhys::Derivative</em><!-- Reference end --> refer to
|
213
|
+
<!-- Reference, RDLabel "@@deriv_method" doesn't exist --><em class="label-not-found">@@deriv_method</em><!-- Reference end -->. </p>
|
214
|
+
<p>ARGUMENTS</p>
|
215
|
+
<ul>
|
216
|
+
<li>args : Option for derivative method. Pleaase see <!-- Reference, RDLabel "GPhys::Derivative" doesn't exist --><em class="label-not-found">GPhys::Derivative</em><!-- Reference end -->.</li>
|
217
|
+
</ul>
|
218
|
+
<p>RETURN VALUE</p>
|
219
|
+
<ul>
|
220
|
+
<li>nil</li>
|
221
|
+
</ul></dd>
|
222
|
+
<dt><a name="label:9" id="label:9"><code>scale_height</code></a></dt><!-- RDLabel: "scale_height" -->
|
223
|
+
<dd>
|
224
|
+
<p>return a value of the scale height on the log-pressure coordinate.
|
225
|
+
default value is "7000 m".</p>
|
226
|
+
<pre>RETURN VALUE
|
227
|
+
* scale height (UNumeric)</pre></dd>
|
228
|
+
<dt><a name="label:10" id="label:10"><code>scale_height=(<var>h</var>)</code></a></dt><!-- RDLabel: "scale_height=" -->
|
229
|
+
<dd>
|
230
|
+
<p>set a value of the scale height on the log-pressure coordinate.</p>
|
231
|
+
<pre>RETURN VALUE
|
232
|
+
* nil</pre></dd>
|
233
|
+
<dt><a name="label:11" id="label:11"><code>radius</code></a></dt><!-- RDLabel: "radius" -->
|
234
|
+
<dd>
|
235
|
+
<p>return a value of the radius of the planet. default value is "6.37E6 m".</p>
|
236
|
+
<pre>RETURN VALUE
|
237
|
+
* radius (UNumeric)</pre></dd>
|
238
|
+
<dt><a name="label:12" id="label:12"><code>radius=(<var>a</var>)</code></a></dt><!-- RDLabel: "radius=" -->
|
239
|
+
<dd>
|
240
|
+
<p>set a value of the radius of the planet.</p>
|
241
|
+
<pre>RETURN VALUE
|
242
|
+
* nil</pre></dd>
|
243
|
+
<dt><a name="label:13" id="label:13"><code>rot_period</code></a></dt><!-- RDLabel: "rot_period" -->
|
244
|
+
<dd>
|
245
|
+
<p>return a value of the rotation period of the planet.
|
246
|
+
default value is "8.64E4 s".</p>
|
247
|
+
<pre>RETURN VALUE
|
248
|
+
* rotation period (UNumeric)</pre></dd>
|
249
|
+
<dt><a name="label:14" id="label:14"><code>rot_period=(<var>rp</var>)</code></a></dt><!-- RDLabel: "rot_period=" -->
|
250
|
+
<dd>
|
251
|
+
<p>set a value of the rotation period of the planet.</p>
|
252
|
+
<pre>RETURN VALUE
|
253
|
+
* nil</pre></dd>
|
254
|
+
<dt><a name="label:15" id="label:15"><code>g_forces</code></a></dt><!-- RDLabel: "g_forces" -->
|
255
|
+
<dd>
|
256
|
+
<p>return a value of the gravitational acceleration on the surface.
|
257
|
+
default value is "9.81 m/s2".</p>
|
258
|
+
<pre>RETURN VALUE
|
259
|
+
* rotation period (UNumeric)</pre></dd>
|
260
|
+
<dt><a name="label:16" id="label:16"><code>g_forces=(<var>g</var>)</code></a></dt><!-- RDLabel: "g_forces=" -->
|
261
|
+
<dd>
|
262
|
+
<p>set a value of the gravitational acceleration on the surface.</p>
|
263
|
+
<pre>RETURN VALUE
|
264
|
+
* nil</pre></dd>
|
265
|
+
<dt><a name="label:17" id="label:17"><code>p00</code></a></dt><!-- RDLabel: "p00" -->
|
266
|
+
<dd>
|
267
|
+
<p>return a value of the reference surface pressure.
|
268
|
+
default value is "1.0E5 Pa".</p>
|
269
|
+
<pre>RETURN VALUE
|
270
|
+
* reference surface pressure (UNumeric)</pre></dd>
|
271
|
+
<dt><a name="label:18" id="label:18"><code>p00=(<var>p00</var>)</code></a></dt><!-- RDLabel: "p00=" -->
|
272
|
+
<dd>
|
273
|
+
<p>set a value of the reference surface pressure.</p>
|
274
|
+
<pre>RETURN VALUE
|
275
|
+
* nil</pre></dd>
|
276
|
+
<dt><a name="label:19" id="label:19"><code>cp</code></a></dt><!-- RDLabel: "cp" -->
|
277
|
+
<dd>
|
278
|
+
<p>return a value of the specific heat at constant pressure of the atmosphere.
|
279
|
+
default value is "1004.0[J.K-1.kg-1]"</p>
|
280
|
+
<pre>RETURN VALUE
|
281
|
+
* reference surface pressure (UNumeric)</pre></dd>
|
282
|
+
<dt><a name="label:20" id="label:20"><code>cp=(<var>cp</var>)</code></a></dt><!-- RDLabel: "cp=" -->
|
283
|
+
<dd>
|
284
|
+
<p>set a value of the specific heat at constant pressure of the atmosphere.</p>
|
285
|
+
<pre>RETURN VALUE
|
286
|
+
* nil</pre></dd>
|
287
|
+
<dt><a name="label:21" id="label:21"><code>gas_const</code></a></dt><!-- RDLabel: "gas_const" -->
|
288
|
+
<dd>
|
289
|
+
<p>return a value of the gas constant divided by molecular mass.
|
290
|
+
default value is "287.0[J.K-1.kg-1]".</p>
|
291
|
+
<pre>RETURN VALUE
|
292
|
+
* reference surface pressure (UNumeric)</pre></dd>
|
293
|
+
<dt><a name="label:22" id="label:22"><code>gas_const=(<var>r</var>)</code></a></dt><!-- RDLabel: "gas_const=" -->
|
294
|
+
<dd>
|
295
|
+
<p>set a value of the gas constant divided by molecular mass.</p>
|
296
|
+
<pre>RETURN VALUE
|
297
|
+
* nil</pre></dd>
|
298
|
+
<dt><a name="label:23" id="label:23"><code>get_constants</code></a></dt><!-- RDLabel: "get_constants" -->
|
299
|
+
<dd>
|
300
|
+
<p>return values of the scale height, radius, rotation period,
|
301
|
+
gravitational acceleration, reference surface pressure, specific heat,
|
302
|
+
gas constant.</p>
|
303
|
+
<pre>RETURN VALUE
|
304
|
+
* scale height (UNumeric)
|
305
|
+
* radius (UNumeric)
|
306
|
+
* rotation period (UNumeric)
|
307
|
+
* gravitational acceleration (UNumeric)
|
308
|
+
* reference surface pressure (UNumeric)
|
309
|
+
* specific heat at constant pressure of the atmosphere (UNumeric)
|
310
|
+
* gas constant divided by molecular mass (UNumeric)</pre></dd>
|
311
|
+
<dt><a name="label:24" id="label:24"><code>set_constants(<var>scale_height</var>, <var>radius</var>, <var>rot_period</var>, <var>g_forces</var>, <var>p00</var>, <var>cp</var>, <var>gas_const</var>)</code></a></dt><!-- RDLabel: "set_constants" -->
|
312
|
+
<dd>
|
313
|
+
<p>set values of the scale height, radius, rotation period, and gravitational
|
314
|
+
acceleration.</p>
|
315
|
+
<pre>ARGUMENTS
|
316
|
+
* scale height (UNumeric)
|
317
|
+
* radius (UNumeric)
|
318
|
+
* rotation period (UNumeric)
|
319
|
+
* gravitational acceleration (UNumeric)
|
320
|
+
* reference surface pressure (UNumeric)
|
321
|
+
* specific heat at constant pressure of the atmosphere (UNumeric)
|
322
|
+
* gas constant divided by molecular mass (UNumeric)
|
323
|
+
|
324
|
+
RETURN VALUE
|
325
|
+
* nil</pre></dd>
|
326
|
+
<dt><a name="label:25" id="label:25"><code>make_gphys(*<var>ax_ary</var>)</code></a></dt><!-- RDLabel: "make_gphys" -->
|
327
|
+
<dd>
|
328
|
+
<p>make GPhys objects from Axis or VArray. data components is VArray of
|
329
|
+
<!-- Reference, RDLabel "Axis.pos" doesn't exist --><em class="label-not-found">Axis.pos</em><!-- Reference end -->.</p>
|
330
|
+
<p>ARGUMENTS</p>
|
331
|
+
<ul>
|
332
|
+
<li>ax_ary (Array): an Array each objects are <!-- Reference, RDLabel "Axis" doesn't exist --><em class="label-not-found">Axis</em><!-- Reference end --> or <!-- Reference, RDLabel "VArray" doesn't exist --><em class="label-not-found">VArray</em><!-- Reference end -->.</li>
|
333
|
+
</ul>
|
334
|
+
<p>RETURN VALUE</p>
|
335
|
+
<ul>
|
336
|
+
<li>gp_ary (Array): an Array each objects are <!-- Reference, RDLabel "GPhys" doesn't exist --><em class="label-not-found">GPhys</em><!-- Reference end -->.</li>
|
337
|
+
</ul></dd>
|
338
|
+
<dt><a name="label:26" id="label:26"><code>to_w_if_omega(<var>gp</var>, <var>z</var>)</code></a></dt><!-- RDLabel: "to_w_if_omega" -->
|
339
|
+
<dd>
|
340
|
+
<p>convert to velocity(W) if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure velocity(Omega).
|
341
|
+
decide from units <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end -->. if it compatible with "m/s" then
|
342
|
+
deem it <!-- Reference, RDLabel "W" doesn't exist --><em class="label-not-found">W</em><!-- Reference end -->, else if "Pa/s" then deem it <!-- Reference, RDLabel "Omega" doesn't exist --><em class="label-not-found">Omega</em><!-- Reference end -->.</p>
|
343
|
+
<p>ARGUMENTS</p>
|
344
|
+
<ul>
|
345
|
+
<li>gp(GPhys): a GPhys which data represents velocity or pressure velocity.</li>
|
346
|
+
<li>z(GPhys): a GPhys which data represents z-coordinate.</li>
|
347
|
+
</ul>
|
348
|
+
<p>RETURN VALUE</p>
|
349
|
+
<ul>
|
350
|
+
<li>gp_w(GPhys): a GPhys which data represents velocity or pressure velocity</li>
|
351
|
+
</ul></dd>
|
352
|
+
<dt><a name="label:27" id="label:27"><code>to_z_if_pressure(<var>gp</var>)</code></a></dt><!-- RDLabel: "to_z_if_pressure" -->
|
353
|
+
<dd>
|
354
|
+
<p>convert to altitude(z) if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure coordinate (p).
|
355
|
+
decide from units <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end -->. if it compatible with "Pa" then
|
356
|
+
deem it (p).</p>
|
357
|
+
<p>ARGUMENTS</p>
|
358
|
+
<ul>
|
359
|
+
<li>gp(GPhys): a GPhys which data represents z or pressure coordinate.</li>
|
360
|
+
</ul>
|
361
|
+
<p>RETURN VALUE</p>
|
362
|
+
<ul>
|
363
|
+
<li>gp_z(GPhys): a GPhys which data represents z-coordinate.</li>
|
364
|
+
</ul></dd>
|
365
|
+
<dt><a name="label:28" id="label:28"><code>to_p_if_altitude(<var>gp</var>)</code></a></dt><!-- RDLabel: "to_p_if_altitude" -->
|
366
|
+
<dd>
|
367
|
+
<p>convert to pressure(p) if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is altitude(z).
|
368
|
+
decide from units <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end -->. if it compatible with "m" then
|
369
|
+
deem it (z).</p>
|
370
|
+
<p>ARGUMENTS</p>
|
371
|
+
<ul>
|
372
|
+
<li>gp(GPhys): a GPhys which data represents z or pressure coordinate.</li>
|
373
|
+
</ul>
|
374
|
+
<p>RETURN VALUE</p>
|
375
|
+
<ul>
|
376
|
+
<li>gp_p(GPhys): a GPhys which data represents p-coordinate.</li>
|
377
|
+
</ul></dd>
|
378
|
+
<dt><a name="label:29" id="label:29"><code>to_theta_if_temperature(<var>gp_t</var>, <var>z</var>, <var>flag_temp_or_theta</var>=<var>true</var>)</code></a></dt><!-- RDLabel: "to_theta_if_temperature" -->
|
379
|
+
<dd>
|
380
|
+
<p>convert <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> to potential temperature(\theta) if
|
381
|
+
<!-- Reference, RDLabel "flag_temp_or_theta" doesn't exist --><em class="label-not-found">flag_temp_or_theta</em><!-- Reference end --> is true. </p>
|
382
|
+
<p>ARGUMENTS</p>
|
383
|
+
<ul>
|
384
|
+
<li><p>gp_t(GPhys): a GPhys which data represents potential temperature or </p>
|
385
|
+
<pre>temperature.</pre></li>
|
386
|
+
<li>z(GPhys) : a GPhys which data represents z-coordinate.</li>
|
387
|
+
<li>flag_temp_or_theta(True or False): a flagment if <!-- Reference, RDLabel "gp_t" doesn't exist --><em class="label-not-found">gp_t</em><!-- Reference end --> convert to.</li>
|
388
|
+
</ul>
|
389
|
+
<p>RETURN VALUE</p>
|
390
|
+
<ul>
|
391
|
+
<li>gp_theta(GPhys): a GPhys which data represents potential temperature.</li>
|
392
|
+
</ul></dd>
|
393
|
+
<dt><a name="label:30" id="label:30"><code>to_rad_if_deg(<var>gp</var>)</code></a></dt><!-- RDLabel: "to_rad_if_deg" -->
|
394
|
+
<dd>
|
395
|
+
<p>convert to radian if <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end --> is degrees. </p>
|
396
|
+
<p>ARGUMENTS</p>
|
397
|
+
<ul>
|
398
|
+
<li>gp(GPhys): a GPhys which represents angle (radian or degree).</li>
|
399
|
+
</ul>
|
400
|
+
<p>RETURN VALUE</p>
|
401
|
+
<ul>
|
402
|
+
<li>gp_rad(GPhys): a GPhys which units is radian.</li>
|
403
|
+
</ul></dd>
|
404
|
+
<dt><a name="label:31" id="label:31"><code>eddy_products(<var>gp_u</var>, <var>gp_v</var>, <var>gp_w</var>, <var>gp_t</var>, <var>dimname</var>)</code></a></dt><!-- RDLabel: "eddy_products" -->
|
405
|
+
<dd>
|
406
|
+
<p>calculate eddy products along "dimname" dimension. now in this documents,
|
407
|
+
' means eddy from zonal mean, and () means zonal mean.</p>
|
408
|
+
<p>ARGUMENTS</p>
|
409
|
+
<ul>
|
410
|
+
<li>gp_u(GPhys): a GPhys which data represents zonal-wind velocity(m/s).</li>
|
411
|
+
<li>gp_v(GPhys): a GPhys which data represents merdional-wind velocity(m/s).</li>
|
412
|
+
<li>gp_w(GPhys): a GPhys which data represents vertical-wind velocity(m/s).</li>
|
413
|
+
<li>gp_t(GPhys): a GPhys which data represents temperature(K).</li>
|
414
|
+
</ul>
|
415
|
+
<p>RETURN VALUE</p>
|
416
|
+
<ul>
|
417
|
+
<li>uv_dash(GPhys): a GPhys which represents (gp_u'*gp_v').</li>
|
418
|
+
<li>vt_dash(GPhys): a GPhys which represents (gp_v'*gp_t').</li>
|
419
|
+
<li>uw_dash(GPhys): a GPhys which represents (gp_u'*gp_w').</li>
|
420
|
+
</ul></dd>
|
421
|
+
<dt><a name="label:32" id="label:32"><code>remove_0_at_poles(<var>cos_gp</var>)</code></a></dt><!-- RDLabel: "remove_0_at_poles" -->
|
422
|
+
<dd>
|
423
|
+
<p>set value if the cos(latitude) is nearly equal to 0 (|x|< 1e-6) at poles.
|
424
|
+
at North pole, new value is <a href="(a_cos_lat.val[0] + a_cos_lat.val[1])">2</a>
|
425
|
+
and at South pole <a href="(a_cos_lat.val[-1] + a_cos_lat.val[-2])">2</a></p>
|
426
|
+
<pre>ARGUMENTS
|
427
|
+
* cos_gp(GPhys): a GPhys which represents latitude.
|
428
|
+
|
429
|
+
RETURN VALUE
|
430
|
+
* new_cos_gp(GPhys): a GPhys which value at poles displaceed.</pre></dd>
|
431
|
+
<dt><a name="label:33" id="label:33"><code>preparate_for_vector_on_merdional_section(<var>xax</var>, <var>yax</var>)</code></a></dt><!-- RDLabel: "preparate_for_vector_on_merdional_section" -->
|
432
|
+
<dd>
|
433
|
+
<p>preparate for <!-- Reference, RDLabel "GGraph::vector_on_merdional_section" doesn't exist --><em class="label-not-found">GGraph::vector_on_merdional_section</em><!-- Reference end --> in
|
434
|
+
vector_on_merdional_section. </p>
|
435
|
+
<ol>
|
436
|
+
<li>check <!-- Reference, RDLabel "yax" doesn't exist --><em class="label-not-found">yax</em><!-- Reference end --> if it is proportional to p </li>
|
437
|
+
<li>get axis ( a*phi, z ) </li>
|
438
|
+
</ol>
|
439
|
+
<pre>ARGUMENTS
|
440
|
+
* xax(VArray): a VArray which represents x axis.
|
441
|
+
* yax(VArray): a VArray which represents y axis.
|
442
|
+
|
443
|
+
RETURN VALUE
|
444
|
+
* va_aphi(VArray): a VArray which represents x-coordinate(radius * phi).
|
445
|
+
* va_z(VArray): a VArray which represents z-coordinate.
|
446
|
+
* was_proportional_to_p(True or False): flag original axis proportional to
|
447
|
+
pressure or z.</pre></dd>
|
448
|
+
<dt><a name="label:34" id="label:34"><code>strm_rmean(<var>v_rmean</var>, <var>yzdims</var>=[<var>0</var>,<var>1</var>])</code></a></dt><!-- RDLabel: "strm_rmean" -->
|
449
|
+
<dd>
|
450
|
+
<p>Calculate mass stream function for residual zonal mean circulation. </p>
|
451
|
+
<p>ARGUMENTS</p>
|
452
|
+
<ul>
|
453
|
+
<li>v_rmean (GPhys): a GPhys which is residual zonal mean V.</li>
|
454
|
+
<li>yzdims (Array): an Array which represents axis.</li>
|
455
|
+
</ul>
|
456
|
+
<p>RETURN VALUE</p>
|
457
|
+
<ul>
|
458
|
+
<li>gp_strm (GPhys): a GPhys which is mass stream function on merdional section.</li>
|
459
|
+
</ul></dd>
|
460
|
+
</dl>
|
461
|
+
<h2><a name="label:35" id="label:35">Constants:</a></h2><!-- RDLabel: "Constants:" -->
|
462
|
+
<dl>
|
463
|
+
<dt><a name="label:36" id="label:36"><code>Deriv_methods</code></a></dt><!-- RDLabel: "Deriv_methods" -->
|
464
|
+
<dd>
|
465
|
+
<p>derivative method name [ 'cderiv', 'threepoint_O2nd_deriv' ]</p></dd>
|
466
|
+
</dl>
|
467
|
+
|
468
|
+
</body>
|
469
|
+
</html>
|