gphys 1.2.2.1 → 1.4.3

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  349. data/lib/numru/derivative.rb +2 -0
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  367. data/lib/numru/gphys/derivative.rb +11 -0
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  370. data/lib/numru/gphys/gphys_fft.rb +48 -2
  371. data/lib/numru/gphys/gphys_io.rb +241 -13
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  375. data/lib/numru/gphys/grib_params.rb +26 -3
  376. data/lib/numru/gphys/grid.rb +75 -34
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  384. data/lib/numru/gphys/varraynetcdf.rb +9 -3
  385. data/lib/numru/gphys/version.rb +5 -0
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  389. data/spec/gphys_spec.rb +11 -0
  390. data/spec/spec_helper.rb +2 -0
  391. data/test/test_assoccoords.rb +102 -0
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  394. data/test/test_gphys.rb +20 -0
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  403. data/lib/gphys.rb +0 -2
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+ <?xml version="1.0" ?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml">
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+ <head>
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+ <title>../../lib/numru/derivative.rb</title>
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+ </head>
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+ <body>
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+ <h1><a name="label-0" id="label-0">module NumRu::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::Derivative in derivative.rb" -->
11
+ <h2><a name="label-1" id="label-1">todo</a></h2><!-- RDLabel: "todo" -->
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+ <ul>
13
+ <li>decide argument of b_expand_linear_ext is Symbol or Numeric.
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+ <ul>
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+ <li>now is Numeric.</li>
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+ <li>it denpends the treatment of dRuby.</li>
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+ </ul></li>
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+ <li>support other boundary conditions.</li>
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+ </ul>
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+ <h2><a name="label-2" id="label-2">Index</a></h2><!-- RDLabel: "Index" -->
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+ <ul>
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+ <li><a href="#label-3">module NumRu::Derivative</a>
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+ <ul>
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+ <li><a href="#label-4">threepoint_O2nd_deriv</a>
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+ <ul>
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+ <li>First derivative (2nd Order difference use three point.)</li>
27
+ </ul></li>
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+ <li><a href="#label-5">cderiv</a>
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+ <ul>
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+ <li>First derivative (center difference use two point.)</li>
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+ </ul></li>
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+ <li><!-- Reference, RDLabel "deriv2d" doesn't exist --><em class="label-not-found">deriv2d</em><!-- Reference end -->
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+ <ul>
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+ <li>2nd derivative</li>
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+ </ul></li>
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+ <li><a href="#label-7">b_expand_linear_ext</a>
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+ <ul>
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+ <li>return array extended boundaries with linear extention.</li>
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+ </ul></li>
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+ <li><a href="#label-8">cdiff</a>
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+ <ul>
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+ <li>return difference. (center difference)</li>
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+ </ul></li>
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+ </ul></li>
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+ </ul>
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+ <h1><a name="label-3" id="label-3">module NumRu::Derivative</a></h1><!-- RDLabel: "module NumRu::Derivative" -->
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+ <p>Module functions of Derivative Operater for NArray.</p>
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+ <dl>
49
+ <dt><h4><a name="label-4" id="label-4"><code>threepoint_O2nd_deriv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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+ <dd>
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+ <p>Derivate of <code>z</code> with respect to <code>dim</code> th dim using a 2nd
52
+ order 3-point differentiation valid for non-uniform grid: </p>
53
+ <pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</pre>
54
+ <p>Here, s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
55
+ and _{i} represents the suffix of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th
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+ dimension of the array. ).</p>
57
+ <p>ARGUMENTS</p>
58
+ <ul>
59
+ <li>z (NArray): a NArray which you want to derivative.</li>
60
+ <li>x (NArray): a NArray represents the dimension which derivative respect to.
61
+ z.rank must be 1.</li>
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+ <li>dim (Numeric): a Numeric represents the dimention which derivative respect to.
63
+ you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
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+ <li>bc (Numeric) : a Numeric to represent boundary condition.
65
+ Supported conditions are expressed in terms of boundary extension
66
+ applied before differentiation:
67
+ <ul>
68
+ <li>LINEAR_EXT(=1): default value. linear extension using two
69
+ grid points at the boundaries.</li>
70
+ <li>CYCLIC_EXT(=2): cyclic extension as k,0,1,..,k,0 for indices 0,1,..,k</li>
71
+ <li>MIRROR_A(=3): for indices 0,1,..,k, extends as 0,0,1,..,k,k
72
+ (good for cell interior values with the Neumann condition)</li>
73
+ <li>MIRROR_B(=4): for indices 0,1,..,k, extends as 1,0,1,..,k,k-1
74
+ (good for cell boundary values with the Neumann condition)</li>
75
+ </ul></li>
76
+ </ul>
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+ <p>RETURN VALUE</p>
78
+ <ul>
79
+ <li>O2nd_deriv_data (NArray): (s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
80
+ </ul></dd>
81
+ <dt><h4><a name="label-5" id="label-5"><code>cderiv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "cderiv" -->
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+ <dd>
83
+ <p>Derivate of <code>z</code> with respect to <code>dim</code> th dim using centeral
84
+ differenciation: (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</p>
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+ <p>ARGUMENTS</p>
86
+ <ul>
87
+ <li>z (NArray): a NArray which you want to derivative.</li>
88
+ <li>x (NArray): a NArray represents the dimension which derivative respect
89
+ to. z.rank must be 1.</li>
90
+ <li>dim (Numeric): a Numeric represents the dimention which derivative
91
+ respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
92
+ <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
93
+ <li>bc (Numeric) : a Numeric to represent boundary condition.
94
+ See <a href="#label-4">threepoint_O2nd_deriv</a> for supported conditions.</li>
95
+ </ul>
96
+ <p>RETURN VALUE</p>
97
+ <ul>
98
+ <li>cderiv_data (NArray): (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</li>
99
+ </ul></dd>
100
+ <dt><h4><a name="label-6" id="label-6"><code>deriv2nd(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "deriv2nd" -->
101
+ <dd>
102
+ <p>2nd Derivate of <code>z</code> with respect to <code>dim</code>-th dim
103
+ covering non-uniform grids. Based on:</p>
104
+ <pre>( (z_{i+1}-z_{i})/(x_{i+1}-x_{i}) - (z_{i}-z_{i-1})/(x_{i}-x_{i-1}) )
105
+ / ((x_{i+1}-x_{i-1})/2)</pre>
106
+ <p>ARGUMENTS</p>
107
+ <ul>
108
+ <li>z (NArray): a NArray which you want to derivative.</li>
109
+ <li>x (NArray): a NArray represents the dimension which derivative respect
110
+ to. z.rank must be 1.</li>
111
+ <li>dim (Numeric): a Numeric represents the dimention which derivative
112
+ respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
113
+ <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
114
+ <li>bc (Numeric) : a Numeric to represent boundary condition.
115
+ See <a href="#label-4">threepoint_O2nd_deriv</a> for supported conditions.</li>
116
+ </ul>
117
+ <p>RETURN VALUE</p>
118
+ <ul>
119
+ <li>cderiv_data (NArray): (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</li>
120
+ </ul></dd>
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+ <dt><h4><a name="label-7" id="label-7"><code>b_expand_linear_ext(<var>z</var>, <var>dim</var>)</code></a></h4></dt><!-- RDLabel: "b_expand_linear_ext" -->
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+ <dd>
123
+ <p>expand boundary with linear value. extend array with 1 grid at each
124
+ boundary with <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension, and assign th value which diffrential
125
+ value between a grid short of boundary and boundary grid in original array.
126
+ (on other wards, 2*z_{0}-z_{1} or 2*z_{n-1}-z_{n-2}: now _{i} represents the </p>
127
+ <pre>suffix of {i} th element in the ((&lt;dim&gt;)) th dimension of array. ).</pre>
128
+ <p>ARGUMENTS</p>
129
+ <ul>
130
+ <li>z (NArray): a NArray which you want to expand boundary.</li>
131
+ <li>dim (Numeric): a Numeric represents the dimention which derivative
132
+ respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
133
+ <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
134
+ </ul>
135
+ <p>RETURN VALUE</p>
136
+ <ul>
137
+ <li>expand_data (NArray): </li>
138
+ </ul></dd>
139
+ <dt><h4><a name="label-8" id="label-8"><code>cdiff(<var>x</var>, <var>dim</var>)</code></a></h4></dt><!-- RDLabel: "cdiff" -->
140
+ <dd>
141
+ <p>Diffrence operater. return an NArray which a difference <!-- Reference, RDLabel "x" doesn't exist --><em class="label-not-found">x</em><!-- Reference end -->
142
+ ( in other wards, (x_{i+1} - x_{i-1}): now _{i} represents the suffix of
143
+ {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension of array. ).</p>
144
+ <p>ARGUMENTS</p>
145
+ <ul>
146
+ <li>x (NArray): a NArray which you want to get difference.</li>
147
+ <li>dim (Numeric): a Numeric representing the dimention which derivative
148
+ respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
149
+ <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
150
+ </ul>
151
+ <p>RETURN VALUE</p>
152
+ <ul>
153
+ <li>cdiff_data (NArray): (x_{i+1} - x_{i-1})</li>
154
+ </ul></dd>
155
+ </dl>
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+
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+ </body>
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+ </html>
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+ <?xml version="1.0" ?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml">
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+ <head>
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+ <title>../../lib/numru/gphys/ep_flux.rb</title>
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+ </head>
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+ <body>
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+ <h1><a name="label:0" id="label:0">module NumRu::GPhys::EP_Flux in ep_flux.</a></h1><!-- RDLabel: "module NumRu::GPhys::EP_Flux in ep_flux." -->
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+ <h2><a name="label:1" id="label:1">Testprogram</a></h2><!-- RDLabel: "Testprogram" -->
12
+ <p>Test script path is 'test/test_ep_flux.rb' in expand dir of gphys.tar.gz.</p>
13
+ <h2><a name="label:2" id="label:2">Index</a></h2><!-- RDLabel: "Index" -->
14
+ <ul>
15
+ <li><a href="#label:3">module NumRu::GPhys::EP_Flux</a>
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+ <ul>
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+ <li><a href="#label:4">Functions:</a>
18
+ <ul>
19
+ <li><a href="#label:5">ep_full_sphere</a>
20
+ <ul>
21
+ <li>calculate EP Flux with full set equations on spherical coordinate.</li>
22
+ </ul></li>
23
+ <li><a href="#label:6">div_sphere</a>
24
+ <ul>
25
+ <li>calculate divergence on spherical coordinate, Not only for EP Flux!</li>
26
+ </ul></li>
27
+ <li><a href="#label:34">strm_rmean</a>
28
+ <ul>
29
+ <li>calculate residual mass stream function in spherical coordinate
30
+ (it might be good precision, but enough test has not done yet.)</li>
31
+ </ul></li>
32
+ <li><a href="#label:9">scale_height</a>
33
+ <ul>
34
+ <li>get the scale height.</li>
35
+ </ul></li>
36
+ <li><a href="#label:10">scale_height=</a>
37
+ <ul>
38
+ <li>set the scale height.</li>
39
+ </ul></li>
40
+ <li><a href="#label:11">radius</a>
41
+ <ul>
42
+ <li>get the radus of planet.</li>
43
+ </ul></li>
44
+ <li><a href="#label:12">radius=</a>
45
+ <ul>
46
+ <li>set the radus of planet.</li>
47
+ </ul></li>
48
+ <li><a href="#label:13">rot_period</a>
49
+ <ul>
50
+ <li>get the rotation period of planet.</li>
51
+ </ul></li>
52
+ <li><a href="#label:14">rot_period=</a>
53
+ <ul>
54
+ <li>set the rotation period of planet.</li>
55
+ </ul></li>
56
+ <li><a href="#label:15">g_forces</a>
57
+ <ul>
58
+ <li>get the gravitational acceleration in surface.</li>
59
+ </ul></li>
60
+ <li><a href="#label:16">g_forces=</a>
61
+ <ul>
62
+ <li>set the gravitational acceleration in surface.</li>
63
+ </ul></li>
64
+ <li><a href="#label:17">p00</a>
65
+ <ul>
66
+ <li>get the reference surface pressure.</li>
67
+ </ul></li>
68
+ <li><a href="#label:18">p00=</a>
69
+ <ul>
70
+ <li>set the reference surface pressure.</li>
71
+ </ul></li>
72
+ <li><a href="#label:19">cp</a>
73
+ <ul>
74
+ <li>get the the specific heat at constant pressure of the atmosphere.</li>
75
+ </ul></li>
76
+ <li><a href="#label:20">cp=</a>
77
+ <ul>
78
+ <li>set the the specific heat at constant pressure of the atmosphere.</li>
79
+ </ul></li>
80
+ <li><a href="#label:21">gas_const</a>
81
+ <ul>
82
+ <li>get the specific heat at constant pressure of the atmosphere.</li>
83
+ </ul></li>
84
+ <li><a href="#label:22">gas_const=</a>
85
+ <ul>
86
+ <li>set the specific heat at constant pressure of the atmosphere.</li>
87
+ </ul></li>
88
+ <li><a href="#label:23">get_constants</a>
89
+ <ul>
90
+ <li>get the module variables</li>
91
+ </ul></li>
92
+ <li><a href="#label:24">set_constants</a>
93
+ <ul>
94
+ <li>set the module variables</li>
95
+ </ul></li>
96
+ <li><a href="#label:25">make_gphys</a>
97
+ <ul>
98
+ <li>convert <!-- Reference, RDLabel "Axis" doesn't exist --><em class="label-not-found">Axis</em><!-- Reference end --> to <!-- Reference, RDLabel "GPhys" doesn't exist --><em class="label-not-found">GPhys</em><!-- Reference end -->.</li>
99
+ </ul></li>
100
+ <li><a href="#label:26">to_w_if_omega</a>
101
+ <ul>
102
+ <li>convert to velocity if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure velocity.</li>
103
+ </ul></li>
104
+ <li><a href="#label:27">to_z_if_pressure</a>
105
+ <ul>
106
+ <li>convert to altitude if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure.</li>
107
+ </ul></li>
108
+ <li><a href="#label:28">to_p_if_altitude</a>
109
+ <ul>
110
+ <li>convert to pressure if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is altitude.</li>
111
+ </ul></li>
112
+ <li><a href="#label:29">to_theta_if_temperature</a>
113
+ <ul>
114
+ <li>convert to potential temperature of temperature if <!-- Reference, RDLabel "flag" doesn't exist --><em class="label-not-found">flag</em><!-- Reference end --> is true.</li>
115
+ </ul></li>
116
+ <li><a href="#label:30">to_rad_if_deg</a>
117
+ <ul>
118
+ <li>convert to radian if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is degrees.</li>
119
+ </ul></li>
120
+ <li><a href="#label:31">eddy_products</a>
121
+ <ul>
122
+ <li>calculate eddy flux respect to <!-- Reference, RDLabel "dimname" doesn't exist --><em class="label-not-found">dimname</em><!-- Reference end -->.</li>
123
+ </ul></li>
124
+ <li><a href="#label:32">remove_0_at_poles</a>
125
+ <ul>
126
+ <li>set value if the cos(phi) is 0 at poles (phi is latitude).</li>
127
+ </ul></li>
128
+ <li><a href="#label:33">preparate_for_vector_on_merdional_section</a>
129
+ <ul>
130
+ <li>preparate for <!-- Reference, RDLabel "GGraph::vector_on_merdional_section" doesn't exist --><em class="label-not-found">GGraph::vector_on_merdional_section</em><!-- Reference end -->
131
+ in vector_on_merdional_section.rb</li>
132
+ </ul></li>
133
+ </ul></li>
134
+ <li><a href="#label:35">Constants:</a>
135
+ <ul>
136
+ <li><a href="#label:36">Deriv_methods</a>
137
+ <ul>
138
+ <li>derivative method names.</li>
139
+ </ul></li>
140
+ </ul></li>
141
+ </ul></li>
142
+ </ul>
143
+ <h1><a name="label:3" id="label:3">module NumRu::GPhys::EP_Flux</a></h1><!-- RDLabel: "module NumRu::GPhys::EP_Flux" -->
144
+ <p>Module functions of EP_Flux Operater for GPhys.</p>
145
+ <h2><a name="label:4" id="label:4">Functions:</a></h2><!-- RDLabel: "Functions:" -->
146
+ <dl>
147
+ <dt><a name="label:5" id="label:5"><code>ep_full_sphere(<var>gp_u</var>, <var>gp_v</var>, <var>gp_w_or_omega</var>, <var>gp_temp_or_theta</var>, <var>flag_temp_or_theta</var>, <var>xyzdims</var>=[<var>0</var>,<var>1</var>,<var>2</var>])</code></a></dt><!-- RDLabel: "ep_full_sphere" -->
148
+ <dd>
149
+ <p>Calculate Eliassen-Palm Flux(EP-Flux) from full set equations on the
150
+ spherical coordinate. this method calculates EP-Flux from 4 GPhys objects,
151
+ zonal-wind velocity(U), merdional-wind velocity(V), vertical-wind velocity(W)
152
+ or pressure velocity(Omega), and temperature(T) or potential(Theta)
153
+ temperature. check the equations on documents. </p>
154
+ <p>Furthermore, Residual mean merdional circulation (0, v*, w*) can be calculated.</p>
155
+ <p>ARGUMENTS</p>
156
+ <ul>
157
+ <li>gp_u (GPhys): a GPhys which data is U.</li>
158
+ <li>gp_v (GPhys): a GPhys which data is V.</li>
159
+ <li>gp_w_or_omega (GPhys): a GPhys which data is W or Omega. if you give
160
+ gp_omega, convert to W in this method and calculate EP-Flux.</li>
161
+ <li>gp_temp_or_theta (GPhys): a GPhys which data is T or Theta.</li>
162
+ <li><p>xyzdims (Array): an Array which represents location of upper gphyses's </p>
163
+ <pre>coordinate. if coordinate configuration is
164
+ (longitude, latitude, z), then xyzdims = [0, 1, 2].
165
+ else if coordinate configuration is
166
+ (z, latitude, longitude), then xyzdims = [2, 1, 0].</pre></li>
167
+ </ul>
168
+ <p>RETURN VALUE</p>
169
+ <ul>
170
+ <li>epflx_y (GPhys): EP-Flux y-component. it is on the merdional hoge.</li>
171
+ <li>epflx_z (GPhys): EP-Flux z-component.</li>
172
+ <li>v_rmean (GPhys): residual zonal mean V.</li>
173
+ <li>w_rmean (GPhys): residual zonal mean W.</li>
174
+ <li>gp_lat (GPhys): latitude (its units is radian)</li>
175
+ <li>gp_z (GPhys): from vertical axis (z)</li>
176
+ <li>u_mean (GPhys): zonal-mean U.</li>
177
+ <li>theta_mean (GPhys): zonal-mean Theta.</li>
178
+ <li>uv_dash (GPhys): zonal mean of zonal-eddy products U and V.</li>
179
+ <li>vt_dash (GPhys): zonal mean of zonal-eddy products V and Theta.</li>
180
+ <li>uw_dash (GPhys): zonal mean of zonal-eddy products U and W.</li>
181
+ <li>dtheta_dz (GPhys): zonal mean Theta derivate with z.</li>
182
+ </ul></dd>
183
+ <dt><a name="label:6" id="label:6"><code>div_sphere(<var>gp_y</var>, <var>gp_z</var>)</code></a></dt><!-- RDLabel: "div_sphere" -->
184
+ <dd>
185
+ <p>Calculate divergence on the spherical coordinate. it is exclusive to in
186
+ merdional cross section.</p>
187
+ <p>ARGUMENTS</p>
188
+ <ul>
189
+ <li><p>gp_y (GPhys): a GPhys which is merdional component you want to calculate</p>
190
+ <pre>divergence.</pre></li>
191
+ <li><p>gp_z (GPhys): a GPhys which is vertical component you want to calculate </p>
192
+ <pre>divergence.</pre></li>
193
+ </ul>
194
+ <p>RETURN VALUE</p>
195
+ <ul>
196
+ <li>gp_div (GPhys): a GPhys which is divergence on the spherical coordinate.</li>
197
+ </ul></dd>
198
+ <dt><a name="label:7" id="label:7"><code>set_deriv_method( <var>method_name</var> )</code></a></dt><!-- RDLabel: "set_deriv_method" -->
199
+ <dd>
200
+ <p>Set derivative method. methods are defined in <!-- Reference, RDLabel "GPhys::derivative" doesn't exist --><em class="label-not-found">GPhys::derivative</em><!-- Reference end -->.
201
+ Now <!-- Reference, RDLabel "cderiv" doesn't exist --><em class="label-not-found">cderiv</em><!-- Reference end --> and <!-- Reference, RDLabel "threepoint_O2nd_deriv" doesn't exist --><em class="label-not-found">threepoint_O2nd_deriv</em><!-- Reference end --> supported</p>
202
+ <p>ARGUMENTS</p>
203
+ <ul>
204
+ <li>method_name (String): derivative method name.</li>
205
+ </ul>
206
+ <p>RETURN VALUE</p>
207
+ <ul>
208
+ <li>nil</li>
209
+ </ul></dd>
210
+ <dt><a name="label:8" id="label:8"><code>deriv( *<var>args</var> )</code></a></dt><!-- RDLabel: "deriv" -->
211
+ <dd>
212
+ <p>Call derivative method defined in <!-- Reference, RDLabel "GPhys::Derivative" doesn't exist --><em class="label-not-found">GPhys::Derivative</em><!-- Reference end --> refer to
213
+ <!-- Reference, RDLabel "@@deriv_method" doesn't exist --><em class="label-not-found">@@deriv_method</em><!-- Reference end -->. </p>
214
+ <p>ARGUMENTS</p>
215
+ <ul>
216
+ <li>args : Option for derivative method. Pleaase see <!-- Reference, RDLabel "GPhys::Derivative" doesn't exist --><em class="label-not-found">GPhys::Derivative</em><!-- Reference end -->.</li>
217
+ </ul>
218
+ <p>RETURN VALUE</p>
219
+ <ul>
220
+ <li>nil</li>
221
+ </ul></dd>
222
+ <dt><a name="label:9" id="label:9"><code>scale_height</code></a></dt><!-- RDLabel: "scale_height" -->
223
+ <dd>
224
+ <p>return a value of the scale height on the log-pressure coordinate.
225
+ default value is "7000 m".</p>
226
+ <pre>RETURN VALUE
227
+ * scale height (UNumeric)</pre></dd>
228
+ <dt><a name="label:10" id="label:10"><code>scale_height=(<var>h</var>)</code></a></dt><!-- RDLabel: "scale_height=" -->
229
+ <dd>
230
+ <p>set a value of the scale height on the log-pressure coordinate.</p>
231
+ <pre>RETURN VALUE
232
+ * nil</pre></dd>
233
+ <dt><a name="label:11" id="label:11"><code>radius</code></a></dt><!-- RDLabel: "radius" -->
234
+ <dd>
235
+ <p>return a value of the radius of the planet. default value is "6.37E6 m".</p>
236
+ <pre>RETURN VALUE
237
+ * radius (UNumeric)</pre></dd>
238
+ <dt><a name="label:12" id="label:12"><code>radius=(<var>a</var>)</code></a></dt><!-- RDLabel: "radius=" -->
239
+ <dd>
240
+ <p>set a value of the radius of the planet.</p>
241
+ <pre>RETURN VALUE
242
+ * nil</pre></dd>
243
+ <dt><a name="label:13" id="label:13"><code>rot_period</code></a></dt><!-- RDLabel: "rot_period" -->
244
+ <dd>
245
+ <p>return a value of the rotation period of the planet.
246
+ default value is "8.64E4 s".</p>
247
+ <pre>RETURN VALUE
248
+ * rotation period (UNumeric)</pre></dd>
249
+ <dt><a name="label:14" id="label:14"><code>rot_period=(<var>rp</var>)</code></a></dt><!-- RDLabel: "rot_period=" -->
250
+ <dd>
251
+ <p>set a value of the rotation period of the planet.</p>
252
+ <pre>RETURN VALUE
253
+ * nil</pre></dd>
254
+ <dt><a name="label:15" id="label:15"><code>g_forces</code></a></dt><!-- RDLabel: "g_forces" -->
255
+ <dd>
256
+ <p>return a value of the gravitational acceleration on the surface.
257
+ default value is "9.81 m/s2".</p>
258
+ <pre>RETURN VALUE
259
+ * rotation period (UNumeric)</pre></dd>
260
+ <dt><a name="label:16" id="label:16"><code>g_forces=(<var>g</var>)</code></a></dt><!-- RDLabel: "g_forces=" -->
261
+ <dd>
262
+ <p>set a value of the gravitational acceleration on the surface.</p>
263
+ <pre>RETURN VALUE
264
+ * nil</pre></dd>
265
+ <dt><a name="label:17" id="label:17"><code>p00</code></a></dt><!-- RDLabel: "p00" -->
266
+ <dd>
267
+ <p>return a value of the reference surface pressure.
268
+ default value is "1.0E5 Pa".</p>
269
+ <pre>RETURN VALUE
270
+ * reference surface pressure (UNumeric)</pre></dd>
271
+ <dt><a name="label:18" id="label:18"><code>p00=(<var>p00</var>)</code></a></dt><!-- RDLabel: "p00=" -->
272
+ <dd>
273
+ <p>set a value of the reference surface pressure.</p>
274
+ <pre>RETURN VALUE
275
+ * nil</pre></dd>
276
+ <dt><a name="label:19" id="label:19"><code>cp</code></a></dt><!-- RDLabel: "cp" -->
277
+ <dd>
278
+ <p>return a value of the specific heat at constant pressure of the atmosphere.
279
+ default value is "1004.0[J.K-1.kg-1]"</p>
280
+ <pre>RETURN VALUE
281
+ * reference surface pressure (UNumeric)</pre></dd>
282
+ <dt><a name="label:20" id="label:20"><code>cp=(<var>cp</var>)</code></a></dt><!-- RDLabel: "cp=" -->
283
+ <dd>
284
+ <p>set a value of the specific heat at constant pressure of the atmosphere.</p>
285
+ <pre>RETURN VALUE
286
+ * nil</pre></dd>
287
+ <dt><a name="label:21" id="label:21"><code>gas_const</code></a></dt><!-- RDLabel: "gas_const" -->
288
+ <dd>
289
+ <p>return a value of the gas constant divided by molecular mass.
290
+ default value is "287.0[J.K-1.kg-1]".</p>
291
+ <pre>RETURN VALUE
292
+ * reference surface pressure (UNumeric)</pre></dd>
293
+ <dt><a name="label:22" id="label:22"><code>gas_const=(<var>r</var>)</code></a></dt><!-- RDLabel: "gas_const=" -->
294
+ <dd>
295
+ <p>set a value of the gas constant divided by molecular mass.</p>
296
+ <pre>RETURN VALUE
297
+ * nil</pre></dd>
298
+ <dt><a name="label:23" id="label:23"><code>get_constants</code></a></dt><!-- RDLabel: "get_constants" -->
299
+ <dd>
300
+ <p>return values of the scale height, radius, rotation period,
301
+ gravitational acceleration, reference surface pressure, specific heat,
302
+ gas constant.</p>
303
+ <pre>RETURN VALUE
304
+ * scale height (UNumeric)
305
+ * radius (UNumeric)
306
+ * rotation period (UNumeric)
307
+ * gravitational acceleration (UNumeric)
308
+ * reference surface pressure (UNumeric)
309
+ * specific heat at constant pressure of the atmosphere (UNumeric)
310
+ * gas constant divided by molecular mass (UNumeric)</pre></dd>
311
+ <dt><a name="label:24" id="label:24"><code>set_constants(<var>scale_height</var>, <var>radius</var>, <var>rot_period</var>, <var>g_forces</var>, <var>p00</var>, <var>cp</var>, <var>gas_const</var>)</code></a></dt><!-- RDLabel: "set_constants" -->
312
+ <dd>
313
+ <p>set values of the scale height, radius, rotation period, and gravitational
314
+ acceleration.</p>
315
+ <pre>ARGUMENTS
316
+ * scale height (UNumeric)
317
+ * radius (UNumeric)
318
+ * rotation period (UNumeric)
319
+ * gravitational acceleration (UNumeric)
320
+ * reference surface pressure (UNumeric)
321
+ * specific heat at constant pressure of the atmosphere (UNumeric)
322
+ * gas constant divided by molecular mass (UNumeric)
323
+
324
+ RETURN VALUE
325
+ * nil</pre></dd>
326
+ <dt><a name="label:25" id="label:25"><code>make_gphys(*<var>ax_ary</var>)</code></a></dt><!-- RDLabel: "make_gphys" -->
327
+ <dd>
328
+ <p>make GPhys objects from Axis or VArray. data components is VArray of
329
+ <!-- Reference, RDLabel "Axis.pos" doesn't exist --><em class="label-not-found">Axis.pos</em><!-- Reference end -->.</p>
330
+ <p>ARGUMENTS</p>
331
+ <ul>
332
+ <li>ax_ary (Array): an Array each objects are <!-- Reference, RDLabel "Axis" doesn't exist --><em class="label-not-found">Axis</em><!-- Reference end --> or <!-- Reference, RDLabel "VArray" doesn't exist --><em class="label-not-found">VArray</em><!-- Reference end -->.</li>
333
+ </ul>
334
+ <p>RETURN VALUE</p>
335
+ <ul>
336
+ <li>gp_ary (Array): an Array each objects are <!-- Reference, RDLabel "GPhys" doesn't exist --><em class="label-not-found">GPhys</em><!-- Reference end -->.</li>
337
+ </ul></dd>
338
+ <dt><a name="label:26" id="label:26"><code>to_w_if_omega(<var>gp</var>, <var>z</var>)</code></a></dt><!-- RDLabel: "to_w_if_omega" -->
339
+ <dd>
340
+ <p>convert to velocity(W) if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure velocity(Omega).
341
+ decide from units <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end -->. if it compatible with "m/s" then
342
+ deem it <!-- Reference, RDLabel "W" doesn't exist --><em class="label-not-found">W</em><!-- Reference end -->, else if "Pa/s" then deem it <!-- Reference, RDLabel "Omega" doesn't exist --><em class="label-not-found">Omega</em><!-- Reference end -->.</p>
343
+ <p>ARGUMENTS</p>
344
+ <ul>
345
+ <li>gp(GPhys): a GPhys which data represents velocity or pressure velocity.</li>
346
+ <li>z(GPhys): a GPhys which data represents z-coordinate.</li>
347
+ </ul>
348
+ <p>RETURN VALUE</p>
349
+ <ul>
350
+ <li>gp_w(GPhys): a GPhys which data represents velocity or pressure velocity</li>
351
+ </ul></dd>
352
+ <dt><a name="label:27" id="label:27"><code>to_z_if_pressure(<var>gp</var>)</code></a></dt><!-- RDLabel: "to_z_if_pressure" -->
353
+ <dd>
354
+ <p>convert to altitude(z) if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is pressure coordinate (p).
355
+ decide from units <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end -->. if it compatible with "Pa" then
356
+ deem it (p).</p>
357
+ <p>ARGUMENTS</p>
358
+ <ul>
359
+ <li>gp(GPhys): a GPhys which data represents z or pressure coordinate.</li>
360
+ </ul>
361
+ <p>RETURN VALUE</p>
362
+ <ul>
363
+ <li>gp_z(GPhys): a GPhys which data represents z-coordinate.</li>
364
+ </ul></dd>
365
+ <dt><a name="label:28" id="label:28"><code>to_p_if_altitude(<var>gp</var>)</code></a></dt><!-- RDLabel: "to_p_if_altitude" -->
366
+ <dd>
367
+ <p>convert to pressure(p) if <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> is altitude(z).
368
+ decide from units <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end -->. if it compatible with "m" then
369
+ deem it (z).</p>
370
+ <p>ARGUMENTS</p>
371
+ <ul>
372
+ <li>gp(GPhys): a GPhys which data represents z or pressure coordinate.</li>
373
+ </ul>
374
+ <p>RETURN VALUE</p>
375
+ <ul>
376
+ <li>gp_p(GPhys): a GPhys which data represents p-coordinate.</li>
377
+ </ul></dd>
378
+ <dt><a name="label:29" id="label:29"><code>to_theta_if_temperature(<var>gp_t</var>, <var>z</var>, <var>flag_temp_or_theta</var>=<var>true</var>)</code></a></dt><!-- RDLabel: "to_theta_if_temperature" -->
379
+ <dd>
380
+ <p>convert <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> to potential temperature(\theta) if
381
+ <!-- Reference, RDLabel "flag_temp_or_theta" doesn't exist --><em class="label-not-found">flag_temp_or_theta</em><!-- Reference end --> is true. </p>
382
+ <p>ARGUMENTS</p>
383
+ <ul>
384
+ <li><p>gp_t(GPhys): a GPhys which data represents potential temperature or </p>
385
+ <pre>temperature.</pre></li>
386
+ <li>z(GPhys) : a GPhys which data represents z-coordinate.</li>
387
+ <li>flag_temp_or_theta(True or False): a flagment if <!-- Reference, RDLabel "gp_t" doesn't exist --><em class="label-not-found">gp_t</em><!-- Reference end --> convert to.</li>
388
+ </ul>
389
+ <p>RETURN VALUE</p>
390
+ <ul>
391
+ <li>gp_theta(GPhys): a GPhys which data represents potential temperature.</li>
392
+ </ul></dd>
393
+ <dt><a name="label:30" id="label:30"><code>to_rad_if_deg(<var>gp</var>)</code></a></dt><!-- RDLabel: "to_rad_if_deg" -->
394
+ <dd>
395
+ <p>convert to radian if <!-- Reference, RDLabel "gp.data.units" doesn't exist --><em class="label-not-found">gp.data.units</em><!-- Reference end --> is degrees. </p>
396
+ <p>ARGUMENTS</p>
397
+ <ul>
398
+ <li>gp(GPhys): a GPhys which represents angle (radian or degree).</li>
399
+ </ul>
400
+ <p>RETURN VALUE</p>
401
+ <ul>
402
+ <li>gp_rad(GPhys): a GPhys which units is radian.</li>
403
+ </ul></dd>
404
+ <dt><a name="label:31" id="label:31"><code>eddy_products(<var>gp_u</var>, <var>gp_v</var>, <var>gp_w</var>, <var>gp_t</var>, <var>dimname</var>)</code></a></dt><!-- RDLabel: "eddy_products" -->
405
+ <dd>
406
+ <p>calculate eddy products along "dimname" dimension. now in this documents,
407
+ ' means eddy from zonal mean, and () means zonal mean.</p>
408
+ <p>ARGUMENTS</p>
409
+ <ul>
410
+ <li>gp_u(GPhys): a GPhys which data represents zonal-wind velocity(m/s).</li>
411
+ <li>gp_v(GPhys): a GPhys which data represents merdional-wind velocity(m/s).</li>
412
+ <li>gp_w(GPhys): a GPhys which data represents vertical-wind velocity(m/s).</li>
413
+ <li>gp_t(GPhys): a GPhys which data represents temperature(K).</li>
414
+ </ul>
415
+ <p>RETURN VALUE</p>
416
+ <ul>
417
+ <li>uv_dash(GPhys): a GPhys which represents (gp_u'*gp_v').</li>
418
+ <li>vt_dash(GPhys): a GPhys which represents (gp_v'*gp_t').</li>
419
+ <li>uw_dash(GPhys): a GPhys which represents (gp_u'*gp_w').</li>
420
+ </ul></dd>
421
+ <dt><a name="label:32" id="label:32"><code>remove_0_at_poles(<var>cos_gp</var>)</code></a></dt><!-- RDLabel: "remove_0_at_poles" -->
422
+ <dd>
423
+ <p>set value if the cos(latitude) is nearly equal to 0 (|x|&lt; 1e-6) at poles.
424
+ at North pole, new value is <a href="(a_cos_lat.val[0] + a_cos_lat.val[1])">2</a>
425
+ and at South pole <a href="(a_cos_lat.val[-1] + a_cos_lat.val[-2])">2</a></p>
426
+ <pre>ARGUMENTS
427
+ * cos_gp(GPhys): a GPhys which represents latitude.
428
+
429
+ RETURN VALUE
430
+ * new_cos_gp(GPhys): a GPhys which value at poles displaceed.</pre></dd>
431
+ <dt><a name="label:33" id="label:33"><code>preparate_for_vector_on_merdional_section(<var>xax</var>, <var>yax</var>)</code></a></dt><!-- RDLabel: "preparate_for_vector_on_merdional_section" -->
432
+ <dd>
433
+ <p>preparate for <!-- Reference, RDLabel "GGraph::vector_on_merdional_section" doesn't exist --><em class="label-not-found">GGraph::vector_on_merdional_section</em><!-- Reference end --> in
434
+ vector_on_merdional_section. </p>
435
+ <ol>
436
+ <li>check <!-- Reference, RDLabel "yax" doesn't exist --><em class="label-not-found">yax</em><!-- Reference end --> if it is proportional to p </li>
437
+ <li>get axis ( a*phi, z ) </li>
438
+ </ol>
439
+ <pre>ARGUMENTS
440
+ * xax(VArray): a VArray which represents x axis.
441
+ * yax(VArray): a VArray which represents y axis.
442
+
443
+ RETURN VALUE
444
+ * va_aphi(VArray): a VArray which represents x-coordinate(radius * phi).
445
+ * va_z(VArray): a VArray which represents z-coordinate.
446
+ * was_proportional_to_p(True or False): flag original axis proportional to
447
+ pressure or z.</pre></dd>
448
+ <dt><a name="label:34" id="label:34"><code>strm_rmean(<var>v_rmean</var>, <var>yzdims</var>=[<var>0</var>,<var>1</var>])</code></a></dt><!-- RDLabel: "strm_rmean" -->
449
+ <dd>
450
+ <p>Calculate mass stream function for residual zonal mean circulation. </p>
451
+ <p>ARGUMENTS</p>
452
+ <ul>
453
+ <li>v_rmean (GPhys): a GPhys which is residual zonal mean V.</li>
454
+ <li>yzdims (Array): an Array which represents axis.</li>
455
+ </ul>
456
+ <p>RETURN VALUE</p>
457
+ <ul>
458
+ <li>gp_strm (GPhys): a GPhys which is mass stream function on merdional section.</li>
459
+ </ul></dd>
460
+ </dl>
461
+ <h2><a name="label:35" id="label:35">Constants:</a></h2><!-- RDLabel: "Constants:" -->
462
+ <dl>
463
+ <dt><a name="label:36" id="label:36"><code>Deriv_methods</code></a></dt><!-- RDLabel: "Deriv_methods" -->
464
+ <dd>
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+ <p>derivative method name [ 'cderiv', 'threepoint_O2nd_deriv' ]</p></dd>
466
+ </dl>
467
+
468
+ </body>
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+ </html>