gphys 1.1.1 → 1.2.2

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  1. data/.gitignore +17 -0
  2. data/ChangeLog +221 -0
  3. data/Gemfile +4 -0
  4. data/LICENSE.txt +18 -30
  5. data/README +23 -26
  6. data/README.md +29 -0
  7. data/Rakefile +1 -56
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data/doc/grib.html DELETED
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1
- <?xml version="1.0" ?>
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- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/grib.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label-0" id="label-0">Status</a></h1><!-- RDLabel: "Status" -->
11
- <ul>
12
- <li>only a Lon-Lat coordinate is supported</li>
13
- <li>only simple pakking is supported</li>
14
- <li>variable list is not complete for NCEP and ECMWF</li>
15
- </ul>
16
- <p>if ! 'a'.respond_to?(:ord)</p>
17
- <pre>class String
18
- def ord
19
- self[0]
20
- end
21
- end</pre>
22
- <p>end
23
- if ! 'a'.respond_to?(:getbyte)</p>
24
- <pre>class String
25
- def getbyte(i)
26
- self[i]
27
- end
28
- end</pre>
29
- <p>end</p>
30
- <pre>def str2uint1(str)
31
- return nil if str.length==0
32
- return str.ord
33
- end
34
- def str2uint2(str)
35
- return nil if str.length==0
36
- return (str.ord&lt;&lt;8)+str.getbyte(1)
37
- end
38
- def str2uint3(str)
39
- return nil if str.length==0
40
- return (str.ord&lt;&lt;16)+(str.getbyte(1)&lt;&lt;8)+str.getbyte(2)
41
- end</pre>
42
- <pre>index[1].each{|j|
43
- jj = j-index[1].first
44
- sb = j*nlon+index[0].first
45
- sb = sb-map[true,0..jj-1].count_false if jj&gt;0
46
- sb = sb*nbits_pack
47
- eb = sb+mask[true,j].count_true*nbits_pack
48
- if sb!=eb
49
- var[mask[true,j].where,jj] = get_value(@sgm.file,@pos+8,sb,eb,nbits_pack,nstep)
50
- end
51
- }</pre>
52
- <pre>sb = index[1].first*nlon*nbits_pack
53
- eb = (index[1].end+1)*nlon*nbits_pack
54
- var = get_value(@sgm.file,@pos+8,sb,eb,nbits_pack,nstep)
55
- var.reshape!(nlon, var.length/nlon)
56
- var = var[index[0],true]</pre>
57
- <pre>eb = nlen*nbits_pack
58
- var = get_value(@sgm.file,@pos+8,0,eb,nbits_pack,nstep)
59
- var.reshape!(nlon,nlat)</pre>
60
- <h1><a name="label-1" id="label-1">NumRu::Grib -- a class for Grib datasets</a></h1><!-- RDLabel: "NumRu::Grib &shy;&shy; a class for Grib datasets" -->
61
- <h2><a name="label-2" id="label-2">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
62
- <dl>
63
- <dt><h4><a name="label-3" id="label-3"><code>Grib.new(<var>filename</var>, <var>mode</var>="<var>r</var>")</code></a></h4></dt><!-- RDLabel: "Grib.new" -->
64
- <dd>
65
- <p>make a new Grib object.</p>
66
- <p>ARGUMENTS</p>
67
- <ul>
68
- <li>filename (String): name of the file to open</li>
69
- <li>mode (String): IO mode. "r" (read only) or "w" (write only).</li>
70
- </ul></dd>
71
- <dt><h4><a name="label-4" id="label-4"><code>Grib.open(<var>filename</var>)</code></a></h4></dt><!-- RDLabel: "Grib.open" -->
72
- <dd>
73
- open a Grib file.</dd>
74
- <dt><h4><a name="label-5" id="label-5"><code>Grib.create(<var>filename</var>)</code></a></h4></dt><!-- RDLabel: "Grib.create" -->
75
- <dd>
76
- create a Grib file.</dd>
77
- <dt><h4><a name="label-6" id="label-6"><code>Grib.is_aGrib?(<var>filename</var>)</code></a></h4></dt><!-- RDLabel: "Grib.is_aGrib?" -->
78
- <dd>
79
- return true when file is a Grib dataset</dd>
80
- </dl>
81
- <h2><a name="label-7" id="label-7">Methods</a></h2><!-- RDLabel: "Methods" -->
82
- <dl>
83
- <dt><h4><a name="label-8" id="label-8"><code>close</code></a></h4></dt><!-- RDLabel: "close" -->
84
- <dt><h4><a name="label-9" id="label-9"><code>parse</code></a></h4></dt><!-- RDLabel: "parse" -->
85
- <dt><h4><a name="label-10" id="label-10"><code>path</code></a></h4></dt><!-- RDLabel: "path" -->
86
- <dt><h4><a name="label-11" id="label-11"><code>var_names</code></a></h4></dt><!-- RDLabel: "var_names" -->
87
- <dt><h4><a name="label-12" id="label-12"><code>var( <var>name</var> )</code></a></h4></dt><!-- RDLabel: "var" -->
88
- <dt><h4><a name="label-13" id="label-13"><code>def_var( <var>name</var> )</code></a></h4></dt><!-- RDLabel: "def_var" -->
89
- <dt><h4><a name="label-14" id="label-14"><code>enddef</code></a></h4></dt><!-- RDLabel: "enddef" -->
90
- <dt><h4><a name="label-15" id="label-15"><code>write</code></a></h4></dt><!-- RDLabel: "write" -->
91
- </dl>
92
- <h1><a name="label-16" id="label-16">NumRu::GribDim</a></h1><!-- RDLabel: "NumRu::GribDim" -->
93
- <h2><a name="label-17" id="label-17">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
94
- <dl>
95
- <dt><h4><a name="label-18" id="label-18"><code>new( <var>vat</var>, <var>name</var>, <var>length</var> )</code></a></h4></dt><!-- RDLabel: "new" -->
96
- </dl>
97
- <h2><a name="label-19" id="label-19">Methods</a></h2><!-- RDLabel: "Methods" -->
98
- <dl>
99
- <dt><h4><a name="label-20" id="label-20"><code>var</code></a></h4></dt><!-- RDLabel: "var" -->
100
- <dt><h4><a name="label-21" id="label-21"><code>length</code></a></h4></dt><!-- RDLabel: "length" -->
101
- <dt><h4><a name="label-22" id="label-22"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
102
- <dt><h4><a name="label-23" id="label-23"><code>typecode</code></a></h4></dt><!-- RDLabel: "typecode" -->
103
- <dt><h4><a name="label-24" id="label-24"><code>get</code></a></h4></dt><!-- RDLabel: "get" -->
104
- <dt><h4><a name="label-25" id="label-25"><code>[<var>indices</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
105
- <dt><h4><a name="label-26" id="label-26"><code>put_att(<var>key</var>,<var>val</var>)</code></a></h4></dt><!-- RDLabel: "put_att" -->
106
- <dt><h4><a name="label-27" id="label-27"><code>set_att(<var>key</var>,<var>val</var>)</code></a></h4></dt><!-- RDLabel: "set_att" -->
107
- <dt><h4><a name="label-28" id="label-28"><code>att(<var>key</var>)</code></a></h4></dt><!-- RDLabel: "att" -->
108
- <dt><h4><a name="label-29" id="label-29"><code>att_names</code></a></h4></dt><!-- RDLabel: "att_names" -->
109
- <dt><h4><a name="label-30" id="label-30"><code>inspect</code></a></h4></dt><!-- RDLabel: "inspect" -->
110
- </dl>
111
- <h1><a name="label-31" id="label-31">NumRu::GribVar</a></h1><!-- RDLabel: "NumRu::GribVar" -->
112
- <h2><a name="label-32" id="label-32">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
113
- <dl>
114
- <dt><h4><a name="label-33" id="label-33"><code>new( <var>file</var>, <var>name</var>, <var>obj</var>, <var>dims</var> )</code></a></h4></dt><!-- RDLabel: "new" -->
115
- </dl>
116
- <h2><a name="label-34" id="label-34">Methods</a></h2><!-- RDLabel: "Methods" -->
117
- <dl>
118
- <dt><h4><a name="label-35" id="label-35"><code>file</code></a></h4></dt><!-- RDLabel: "file" -->
119
- <dt><h4><a name="label-36" id="label-36"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
120
- <dt><h4><a name="label-37" id="label-37"><code>rank</code></a></h4></dt><!-- RDLabel: "rank" -->
121
- <dt><h4><a name="label-38" id="label-38"><code>total</code></a></h4></dt><!-- RDLabel: "total" -->
122
- <dt><h4><a name="label-39" id="label-39"><code>set_var</code></a></h4></dt><!-- RDLabel: "set_var" -->
123
- <dt><h4><a name="label-40" id="label-40"><code>set_miss</code></a></h4></dt><!-- RDLabel: "set_miss" -->
124
- <dt><h4><a name="label-41" id="label-41"><code>dim_names</code></a></h4></dt><!-- RDLabel: "dim_names" -->
125
- <dt><h4><a name="label-42" id="label-42"><code>dim( <var>index</var> )</code></a></h4></dt><!-- RDLabel: "dim" -->
126
- <dt><h4><a name="label-43" id="label-43"><code>ndims</code></a></h4></dt><!-- RDLabel: "ndims" -->
127
- <dt><h4><a name="label-44" id="label-44"><code>def_dim(<var>name</var>,<var>index</var>)</code></a></h4></dt><!-- RDLabel: "def_dim" -->
128
- <dt><h4><a name="label-45" id="label-45"><code>put_att( <var>key</var>, <var>value</var> )</code></a></h4></dt><!-- RDLabel: "put_att" -->
129
- <dt><h4><a name="label-46" id="label-46"><code>set_att( <var>key</var>, <var>value</var> )</code></a></h4></dt><!-- RDLabel: "set_att" -->
130
- <dt><h4><a name="label-47" id="label-47"><code>att( <var>key</var> )</code></a></h4></dt><!-- RDLabel: "att" -->
131
- <dt><h4><a name="label-48" id="label-48"><code>att_names</code></a></h4></dt><!-- RDLabel: "att_names" -->
132
- <dt><h4><a name="label-49" id="label-49"><code>shape</code></a></h4></dt><!-- RDLabel: "shape" -->
133
- <dt><h4><a name="label-50" id="label-50"><code>typecode</code></a></h4></dt><!-- RDLabel: "typecode" -->
134
- <dt><h4><a name="label-51" id="label-51"><code>get( <var>indics</var> )</code></a></h4></dt><!-- RDLabel: "get" -->
135
- <dt><h4><a name="label-52" id="label-52"><code>[ <var>indics</var> ]</code></a></h4></dt><!-- RDLabel: "[]" -->
136
- <dt><h4><a name="label-53" id="label-53"><code>inspect</code></a></h4></dt><!-- RDLabel: "inspect" -->
137
- </dl>
138
- <pre>if pds1.time_range!=pds2.time_range
139
- warn("time range is not same: #{pds1.time_range} != #{pds2.time_range}")
140
- return true
141
- end</pre>
142
-
143
- </body>
144
- </html>
data/doc/grid.html DELETED
@@ -1,212 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/grid.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label-0" id="label-0">class NumRU::Grid</a></h1><!-- RDLabel: "class NumRU::Grid" -->
11
- <p>A class to handle discretized grids of physical quantities.</p>
12
- <h2><a name="label-1" id="label-1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
13
- <dl>
14
- <dt><h4><a name="label-2" id="label-2"><code>Grid.new( *<var>axes</var> )</code></a></h4></dt><!-- RDLabel: "Grid.new" -->
15
- <dd>
16
- <p>Constructor.</p>
17
- <p>RETURN VALUE</p>
18
- <ul>
19
- <li>a Grid</li>
20
- </ul></dd>
21
- </dl>
22
- <h2><a name="label-3" id="label-3">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
23
- <dl>
24
- <dt><h4><a name="label-4" id="label-4"><code>axnames</code></a></h4></dt><!-- RDLabel: "axnames" -->
25
- <dd>
26
- <p>Returns the names of the axes</p>
27
- <p>RETURN VALUE</p>
28
- <ul>
29
- <li>an Array of String</li>
30
- </ul></dd>
31
- <dt><h4><a name="label-5" id="label-5"><code>lost_axes</code></a></h4></dt><!-- RDLabel: "lost_axes" -->
32
- <dd>
33
- <p>Returns info on axes eliminated during operations.</p>
34
- <p>Useful for annotation in plots, for example (See the code of GGraph
35
- for an application).</p>
36
- <p>RETURN VALUE</p>
37
- <ul>
38
- <li>an Array of String</li>
39
- </ul></dd>
40
- <dt><h4><a name="label-6" id="label-6"><code>axis(<var>dim_or_dimname</var>)</code></a></h4></dt><!-- RDLabel: "axis" -->
41
- <dd>
42
- <p>Returns an Axis</p>
43
- <p>ARGUMENTS</p>
44
- <ul>
45
- <li>dim_or_dimname (String or Integer) to specify an axis.</li>
46
- </ul>
47
- <p>RETURN VALUE</p>
48
- <ul>
49
- <li>an Axis</li>
50
- </ul></dd>
51
- <dt><h4><a name="label-7" id="label-7"><code>dim_index(<var>dimname</var>)</code></a></h4></dt><!-- RDLabel: "dim_index" -->
52
- <dd>
53
- <p>Returns the integer id (count from zero) of the dimension</p>
54
- <p>ARGUMENT</p>
55
- <ul>
56
- <li>dimname (String or Integer) : this method is trivial if is is an integer</li>
57
- </ul>
58
- <p>RETURN VALUE</p>
59
- <ul>
60
- <li>an Integer</li>
61
- </ul></dd>
62
- <dt><h4><a name="label-8" id="label-8"><code>coord_dim_indices(<var>coordname</var>)</code></a></h4></dt><!-- RDLabel: "coord_dim_indices" -->
63
- <dd>
64
- <p>Coordinate name --&gt; dimension indices.</p>
65
- <p>ARGUMENT</p>
66
- <ul>
67
- <li>coordname (String) : Name of a coordinate</li>
68
- </ul>
69
- <p>RETURN VALUE</p>
70
- <ul>
71
- <li>Array of Integer or nil --
72
- If the coordinate is present it is an Array
73
- containing dimension indices (If the coordinate is 1D,
74
- the lengthof the array is 1.)</li>
75
- </ul></dd>
76
- <dt><h4><a name="label-9" id="label-9"><code>set_axis(<var>dim_or_dimname</var>,<var>ax</var>)</code></a></h4></dt><!-- RDLabel: "set_axis" -->
77
- <dd>
78
- <p>Sets an axis.</p>
79
- <p>ARGUMENTS</p>
80
- <ul>
81
- <li>dim_or_dimname (String or Integer) to specify an axis.</li>
82
- <li>ax (Axis) the axis</li>
83
- </ul>
84
- <p>RETURN VALUE</p>
85
- <ul>
86
- <li>self</li>
87
- </ul></dd>
88
- <dt><h4><a name="label-10" id="label-10"><code>set_lost_axes( <var>lost</var> )</code></a></h4></dt><!-- RDLabel: "set_lost_axes" -->
89
- <dd>
90
- <p>Sets info on axes eliminated.</p>
91
- <p>RETURN VALUE</p>
92
- <ul>
93
- <li>self</li>
94
- </ul></dd>
95
- <dt><h4><a name="label-11" id="label-11"><code>add_lost_axes( <var>lost</var> )</code></a></h4></dt><!-- RDLabel: "add_lost_axes" -->
96
- <dd>
97
- <p>Adds info on axes eliminated to existing ones.</p>
98
- <p>RETURN VALUE</p>
99
- <ul>
100
- <li>self</li>
101
- </ul></dd>
102
- <dt><h4><a name="label-12" id="label-12"><code>delete_axes( <var>at</var>, <var>deleted_by</var>=<var>nil</var> )</code></a></h4></dt><!-- RDLabel: "delete_axes" -->
103
- <dd>
104
- <p>Delete an axis.</p>
105
- <p>ARGUMENTS</p>
106
- <ul>
107
- <li>at (String or Integer) to specify an axis.</li>
108
- <li>deleted_by (String or nil) if non-nil, it is written in
109
- the internal lost-axis info. Best if you put the name of the
110
- method, in which this method is called.</li>
111
- </ul>
112
- <p>RETURN VALUE</p>
113
- <ul>
114
- <li>a Grid</li>
115
- </ul></dd>
116
- <dt><h4><a name="label-13" id="label-13"><code>copy</code></a></h4></dt><!-- RDLabel: "copy" -->
117
- <dd>
118
- <p>Makes a deep clone onto memory.</p>
119
- <p>RETURN VALUE</p>
120
- <ul>
121
- <li>a Grid</li>
122
- </ul></dd>
123
- <dt><h4><a name="label-14" id="label-14"><code>merge(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "merge" -->
124
- <dd>
125
- <p>merge two grids by basically using copies of self's axes but
126
- using the other's if the length in self is 1 and
127
- the length in the other is longer</p>
128
- <p>ARGUMENTS</p>
129
- <ul>
130
- <li>other (Grid)</li>
131
- </ul>
132
- <p>RETURN VALUE</p>
133
- <ul>
134
- <li>a Grid</li>
135
- </ul></dd>
136
- <dt><h4><a name="label-15" id="label-15"><code>shape</code></a></h4></dt><!-- RDLabel: "shape" -->
137
- <dd>
138
- <p>Returns the shape of self.</p>
139
- <p>RETURN VALUE</p>
140
- <ul>
141
- <li>an Array of Integer</li>
142
- </ul></dd>
143
- <dt><h4><a name="label-16" id="label-16"><code>[*<var>slicer</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
144
- <dd>
145
- <p>Returns a subset.</p>
146
- <p>ARGUMENTS</p>
147
- <ul>
148
- <li>Same as those for NArray#[], NetCDFVar#[], etc.</li>
149
- </ul>
150
- <p>RETURN VALUE</p>
151
- <ul>
152
- <li>a Grid</li>
153
- </ul></dd>
154
- <dt><h4><a name="label-17" id="label-17"><code>cut(*<var>args</var>)</code></a></h4></dt><!-- RDLabel: "cut" -->
155
- <dd>
156
- <p>Similar to <a href="#label-16">[]</a>, but the subset is specified by physical coordinate.</p>
157
- <p>ARGUMENTS</p>
158
- <ul>
159
- <li>pattern 1: similar to those for <a href="#label-16">[]</a>, where the first
160
- argument specifies a subset for the first dimension.</li>
161
- <li>pattern 2: by a Hash, in which keys are axis names.</li>
162
- </ul>
163
- <p>EXAMPLES</p>
164
- <ul>
165
- <li><p>Pattern 1</p>
166
- <pre>gphys.cut(135.5,0..20.5,false)</pre></li>
167
- <li><p>Pattern 2</p>
168
- <pre>gphys.cut({'lon'=&gt;135.5,'lat'=&gt;0..20})</pre></li>
169
- </ul>
170
- <p>RETURN VALUE</p>
171
- <ul>
172
- <li>an Array : [a Grid, slicer], where slicer is an array
173
- to be used to make a subset of an corresponding varray
174
- (to be used in GPhys#cut).</li>
175
- </ul></dd>
176
- <dt><h4><a name="label-18" id="label-18"><code>cut_rank_conserving(*<var>args</var>)</code></a></h4></dt><!-- RDLabel: "cut_rank_conserving" -->
177
- <dd>
178
- Similar to <a href="#label-17">cut</a>, but the rank is conserved by not eliminating
179
- any dimension (whose length could be one).</dd>
180
- <dt><h4><a name="label-19" id="label-19"><code>cut_assoccoord(<var>hasharg</var>)</code></a></h4></dt><!-- RDLabel: "cut_assoccoord" -->
181
- <dd>
182
- Cut with respect to the asscoated coordinates. Similar to cut,
183
- when the argeuemnt is a Hash, but hash keys are the names of the
184
- asscoated coordinates.</dd>
185
- <dt><h4><a name="label-20" id="label-20"><code>change_axis(<var>dim</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "change_axis" -->
186
- <dd>
187
- <p>Replaces an axis. (Returns a new object)</p>
188
- <p>ARGUMENTS</p>
189
- <ul>
190
- <li>dim_or_dimname (String or Integer) to specify an axis.</li>
191
- <li>axis (Axis)</li>
192
- </ul>
193
- <p>RETURN VALUE</p>
194
- <ul>
195
- <li>a Grid</li>
196
- </ul></dd>
197
- <dt><h4><a name="label-21" id="label-21"><code>transpose( *<var>dims</var> )</code></a></h4></dt><!-- RDLabel: "transpose" -->
198
- <dd>
199
- <p>Transpose.</p>
200
- <p>ARGUMENTS</p>
201
- <ul>
202
- <li>dims (integers) : for example, [1,0] to transpose a 2D object.
203
- For 3D objects, [1,0,2], [2,1,0], etc.etc.</li>
204
- </ul>
205
- <p>RETURN VALUE</p>
206
- <ul>
207
- <li>a Grid</li>
208
- </ul></dd>
209
- </dl>
210
-
211
- </body>
212
- </html>
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- <?xml version="1.0" ?>
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- <!DOCTYPE html
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- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>index.rd</title>
8
- </head>
9
- <body>
10
- <h1><a name="label-0" id="label-0">Reference manuals of the GPhys library</a></h1><!-- RDLabel: "Reference manuals of the GPhys library" -->
11
- <h2><a name="label-1" id="label-1">Index</a></h2><!-- RDLabel: "Index" -->
12
- <ul>
13
- <li><a href="#label-2">GPhys and its components</a>
14
- <ul>
15
- <li><a href="gphys.html">class NumRu::GPhys</a> : Core part of the GPhys class</li>
16
- </ul></li>
17
- <li><a href="#label-7">Applications distributed with GPhys</a>
18
- <ul>
19
- <li><a href="ggraph.html">module NumRu::GGraph</a> : A graphic library using GPhys.</li>
20
- </ul></li>
21
- <li><a href="#label-8">Application Commands</a></li>
22
- </ul>
23
- <p>---------------------------------------------------------------------</p>
24
- <h2><a name="label-2" id="label-2">GPhys and its components</a></h2><!-- RDLabel: "GPhys and its components" -->
25
- <h4><a name="label-3" id="label-3">GPhys Core Part</a></h4><!-- RDLabel: "GPhys Core Part" -->
26
- <p>A GPhys object has the following structure:</p>
27
- <pre>-
28
- has 1
29
- a GPhys --------- array-like data (VArray)
30
- | has 1
31
- --------- grid (Grid)
32
- | has rank
33
- ------------ axis (Axis)
34
- | has 1
35
- -------- 1D position data (VArray)
36
- | has 0..
37
- -------- ancillary data (VArray)</pre>
38
- <p>That is, a GPhys object consists of data (whose class is VArray) and
39
- grid (whose class is Grid). The latter consists of axes (whose class is
40
- Axis), which consist of VArray objects (such as ones that have
41
- 1-dimensional grid-point position data). To use GPhys, it is
42
- useful to know these four classes.</p>
43
- <ul>
44
- <li><a href="varray.html">class NumRu::VArray</a> :
45
- Virtual Array class, which holds multi-dimensional data of various
46
- format and media (on memory or in file).
47
- <ul>
48
- <li><a href="varraycomposite.html">class NumRu::VArrayComposite</a> :
49
- Subclass of VArray to bundle multiple VArrays by "tiling".</li>
50
- </ul></li>
51
- <li><a href="axis.html">class NumRu::Axis</a> : A class to represent a discretized physical coordinate.</li>
52
- <li><a href="grid.html">class NumRu::Grid</a> : A class to represent discretized grids of physical quantities.</li>
53
- <li><a href="gphys.html">class NumRu::GPhys</a> : Core part of the GPhys class</li>
54
- </ul>
55
- <h4><a name="label-4" id="label-4">Miscellaneous Extensions of GPhys</a></h4><!-- RDLabel: "Miscellaneous Extensions of GPhys" -->
56
- <ul>
57
- <li><a href="coordtransform.html">coordinate transformation</a> :
58
- Extension of the NumRu::GPhys class for coordinate transformation.</li>
59
- <li><a href="gphys_fft.html">FFT</a> :
60
- Extension of the NumRu::GPhys class
61
- for the Fast Fourier Transformation and its applications</li>
62
- <li><a href="derivative/index.html">module NumRu::GPhys::Derivative</a> :
63
- Module functions to make differentiation of GPhys objects.</li>
64
- <li><a href="ep_flux/index.html">module NumRu::GPhys::EP_Flux</a> :
65
- Module functions to derive the Eliassen-Palm flux and related
66
- quantities (such as the residual circulation and its mass stream function).</li>
67
- <li><a href="interpolate/index.html">intepolation</a> : Interpolation library</li>
68
- <li><a href="ganalysis_met/index.html">GAnalysis::Met</a> : Meteorological analysis library</li>
69
- </ul>
70
- <h4><a name="label-5" id="label-5">Miscellaneous Dependent Libraries Distributed with GPhys</a></h4><!-- RDLabel: "Miscellaneous Dependent Libraries Distributed with GPhys" -->
71
- <ul>
72
- <li><a href="unumeric.html">class NumRu::UNumeric</a> :
73
- Numeric with units (combination of Numeric and Units)</li>
74
- <li><a href="derivative/index.html">module NumRu::Derivative</a> :
75
- Module functions to make differentiation using NArray.</li>
76
- <li><!-- Reference, RDLabel "class NumRu::SubsetMapping" doesn't exist --><em class="label-not-found">class NumRu::SubsetMapping</em><!-- Reference end --> : Sorry, yet to be written.</li>
77
- <li><a href="attribute.html">class NumRu::Attribute</a> : A Hash class compatible with NetCDF attributes.</li>
78
- <li><a href="coordmapping.html">class NumRu::CoordMapping</a> :
79
- <ul>
80
- <li><a href="coordmapping.html">class NumRu::LinearCoordMapping</a> :</li>
81
- </ul></li>
82
- <li><a href="grads_gridded.html">class NumRu::GrADS_Gridded</a> :
83
- Class to handle GrADS data.</li>
84
- <li><a href="grib.html">class NumRu::Grib</a> :
85
- a class for Grib datasets.</li>
86
- <li><a href="htdir.html">class NumRu::GDir::HtDir</a> :
87
- A class to treat the URL of a "directory" as a directory (used in
88
- GDir).</li>
89
- </ul>
90
- <h4><a name="label-6" id="label-6">External File Handlers of GPhys</a></h4><!-- RDLabel: "External File Handlers of GPhys" -->
91
- <ul>
92
- <li><a href="gphys_io.html">module NumRu::GPhys::IO</a> :
93
- GPhys file IO module for all file types.</li>
94
- <li><a href="gphys_netcdf_io.html">module NumRu::GPhys::NetCDF_IO</a> :
95
- NetCDF data input/output.</li>
96
- <li><a href="netcdf_convention.html">module NumRu::NetCDF_Conventions,
97
- module NumRu::NetCDF_Convention_Users_Guide etc.
98
- </a> :
99
- NetCDF convention handler.</li>
100
- <li><a href="gphys_grads_io.html">module NumRu::GPhys::GrADS_IO</a> :
101
- GrADS data input/output.</li>
102
- <li><a href="gphys_grib_io.html">module NumRu::GPhys::Grib_IO</a> :
103
- Grib data IO.</li>
104
- </ul>
105
- <h2><a name="label-7" id="label-7">Applications distributed with GPhys</a></h2><!-- RDLabel: "Applications distributed with GPhys" -->
106
- <p>To use the following, you have to <var>require</var> explicitly. </p>
107
- <ul>
108
- <li><a href="ggraph.html">module NumRu::GGraph</a> :
109
- A graphic library using GPhys.</li>
110
- <li><a href="gdir.html">class NumRu::GDir</a> :
111
- A class to represent diretories and data files for GPhys.</li>
112
- <li><a href="gdir_connect_ftp-like.html">irb start-up program gdir_connect_ftp-like</a> A library to be required
113
- to interactively connect with a <a href="gdir_server.html">gdir_server</a>.</li>
114
- </ul>
115
- <h2><a name="label-8" id="label-8">Application Commands</a></h2><!-- RDLabel: "Application Commands" -->
116
- <ul>
117
- <li><a href="grads2nc_with_gphys.html">grads2nc_with_gphys</a> file converter
118
- from the GrADS format to NetCDF</li>
119
- <li><a href="gdir_server.html">gdir_server</a> A dRuby server with a GDir
120
- at the front end.</li>
121
- <li><a href="gdir_client.html">gdir_client</a> : A client of gdir_server
122
- using irb with <a href="gdir_connect_ftp-like.html">gdir_connect_ftp-like</a></li>
123
- <li><a href="gpcat.html">gpcat</a> Read a variable in multiple NetCDF files, concatenate and write them to a single netcdf file. </li>
124
- <li><a href="gpcut.html">gpcut</a> extract, slicing and thinning a GPhys variable</li>
125
- <li><a href="gplist.html">gplist</a> print out variables and their dimnsions</li>
126
- <li><a href="gpmath.html">gpmath</a> operate a math function to a GPhys variable</li>
127
- <li><a href="gpmaxmin.html">gpmaxmin</a> prints maximum and minimum values of a GPhys variable</li>
128
- <li><a href="gpprint.html">gpprint</a> prints the values of a GPhys variable </li>
129
- <li><a href="gpview.html">gpview</a> visualizer (2D, 1D)</li>
130
- </ul>
131
-
132
- </body>
133
- </html>
data/doc/index.rd DELETED
@@ -1,127 +0,0 @@
1
- =begin
2
-
3
- =Reference manuals of the GPhys library
4
-
5
- ==Index
6
- * ((<GPhys and its components>))
7
- * ((<class NumRu::GPhys|URL:gphys.html>)) : Core part of the GPhys class
8
- * ((<Applications distributed with GPhys>))
9
- * ((<module NumRu::GGraph|URL:ggraph.html>)) : A graphic library using GPhys.
10
- * ((<Application Commands>))
11
-
12
- ---------------------------------------------------------------------
13
-
14
- ==GPhys and its components
15
-
16
- ====GPhys Core Part
17
-
18
- A GPhys object has the following structure:
19
-
20
- -
21
- has 1
22
- a GPhys --------- array-like data (VArray)
23
- | has 1
24
- --------- grid (Grid)
25
- | has rank
26
- ------------ axis (Axis)
27
- | has 1
28
- -------- 1D position data (VArray)
29
- | has 0..
30
- -------- ancillary data (VArray)
31
-
32
- That is, a GPhys object consists of data (whose class is VArray) and
33
- grid (whose class is Grid). The latter consists of axes (whose class is
34
- Axis), which consist of VArray objects (such as ones that have
35
- 1-dimensional grid-point position data). To use GPhys, it is
36
- useful to know these four classes.
37
-
38
- * ((<class NumRu::VArray|URL:varray.html>)) :
39
- Virtual Array class, which holds multi-dimensional data of various
40
- format and media (on memory or in file).
41
-
42
- * ((<class NumRu::VArrayComposite|URL:varraycomposite.html>)) :
43
- Subclass of VArray to bundle multiple VArrays by "tiling".
44
-
45
- * ((<class NumRu::Axis|URL:axis.html>)) : A class to represent a discretized physical coordinate.
46
- * ((<class NumRu::Grid|URL:grid.html>)) : A class to represent discretized grids of physical quantities.
47
- * ((<class NumRu::GPhys|URL:gphys.html>)) : Core part of the GPhys class
48
-
49
- ====Miscellaneous Extensions of GPhys
50
-
51
- * ((<coordinate transformation|URL:coordtransform.html>)) :
52
- Extension of the NumRu::GPhys class for coordinate transformation.
53
- * ((<FFT|URL:gphys_fft.html>)) :
54
- Extension of the NumRu::GPhys class
55
- for the Fast Fourier Transformation and its applications
56
- * ((<module NumRu::GPhys::Derivative|URL:derivative/index.html>)) :
57
- Module functions to make differentiation of GPhys objects.
58
- * ((<module NumRu::GPhys::EP_Flux|URL:ep_flux/index.html>)) :
59
- Module functions to derive the Eliassen-Palm flux and related
60
- quantities (such as the residual circulation and its mass stream function).
61
- * ((<intepolation|URL:interpolate/index.html>)) : Interpolation library
62
- * ((<GAnalysis::Met|URL:ganalysis_met/index.html>)) : Meteorological analysis library
63
-
64
- ====Miscellaneous Dependent Libraries Distributed with GPhys
65
-
66
- * ((<class NumRu::UNumeric|URL:unumeric.html>)) :
67
- Numeric with units (combination of Numeric and Units)
68
- * ((<module NumRu::Derivative|URL:derivative/index.html>)) :
69
- Module functions to make differentiation using NArray.
70
- * ((<class NumRu::SubsetMapping>)) : Sorry, yet to be written.
71
- * ((<class NumRu::Attribute|URL:attribute.html>)) : A Hash class compatible with NetCDF attributes.
72
- * ((<class NumRu::CoordMapping|URL:coordmapping.html>)) :
73
- * ((<class NumRu::LinearCoordMapping|URL:coordmapping.html>)) :
74
- * ((<class NumRu::GrADS_Gridded|URL:grads_gridded.html>)) :
75
- Class to handle GrADS data.
76
- * ((<class NumRu::Grib|URL:grib.html>)) :
77
- a class for Grib datasets.
78
- * ((<class NumRu::GDir::HtDir|URL:htdir.html>)) :
79
- A class to treat the URL of a "directory" as a directory (used in
80
- GDir).
81
-
82
- ====External File Handlers of GPhys
83
-
84
- * ((<module NumRu::GPhys::IO|URL:gphys_io.html>)) :
85
- GPhys file IO module for all file types.
86
- * ((<module NumRu::GPhys::NetCDF_IO|URL:gphys_netcdf_io.html>)) :
87
- NetCDF data input/output.
88
- * ((<module NumRu::NetCDF_Conventions,
89
- module NumRu::NetCDF_Convention_Users_Guide etc.
90
- |URL:netcdf_convention.html>)) :
91
- NetCDF convention handler.
92
- * ((<module NumRu::GPhys::GrADS_IO|URL:gphys_grads_io.html>)) :
93
- GrADS data input/output.
94
- * ((<module NumRu::GPhys::Grib_IO|URL:gphys_grib_io.html>)) :
95
- Grib data IO.
96
-
97
- ==Applications distributed with GPhys
98
-
99
- To use the following, you have to ((|require|)) explicitly.
100
-
101
- * ((<module NumRu::GGraph|URL:ggraph.html>)) :
102
- A graphic library using GPhys.
103
-
104
- * ((<class NumRu::GDir|URL:gdir.html>)) :
105
- A class to represent diretories and data files for GPhys.
106
-
107
- * ((<irb start-up program gdir_connect_ftp-like|URL:gdir_connect_ftp-like.html>)) A library to be required
108
- to interactively connect with a ((<gdir_server|URL:gdir_server.html>)).
109
-
110
- ==Application Commands
111
-
112
- * ((<grads2nc_with_gphys|URL:grads2nc_with_gphys.html>)) file converter
113
- from the GrADS format to NetCDF
114
- * ((<gdir_server|URL:gdir_server.html>)) A dRuby server with a GDir
115
- at the front end.
116
- * ((<gdir_client|URL:gdir_client.html>)) : A client of gdir_server
117
- using irb with ((<gdir_connect_ftp-like|URL:gdir_connect_ftp-like.html>))
118
-
119
- * ((<gpcat|URL:gpcat.html>)) Read a variable in multiple NetCDF files, concatenate and write them to a single netcdf file.
120
- * ((<gpcut|URL:gpcut.html>)) extract, slicing and thinning a GPhys variable
121
- * ((<gplist|URL:gplist.html>)) print out variables and their dimnsions
122
- * ((<gpmath|URL:gpmath.html>)) operate a math function to a GPhys variable
123
- * ((<gpmaxmin|URL:gpmaxmin.html>)) prints maximum and minimum values of a GPhys variable
124
- * ((<gpprint|URL:gpprint.html>)) prints the values of a GPhys variable
125
- * ((<gpview|URL:gpview.html>)) visualizer (2D, 1D)
126
-
127
- =end