gphys 1.1.1 → 1.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (369) hide show
  1. data/.gitignore +17 -0
  2. data/ChangeLog +221 -0
  3. data/Gemfile +4 -0
  4. data/LICENSE.txt +18 -30
  5. data/README +23 -26
  6. data/README.md +29 -0
  7. data/Rakefile +1 -56
  8. data/bin/gpaop +2 -1
  9. data/bin/gpcut +3 -2
  10. data/bin/gpedit +6 -2
  11. data/bin/gpmath +3 -2
  12. data/bin/gpmaxmin +3 -2
  13. data/bin/gpprint +2 -1
  14. data/bin/gpvect +28 -5
  15. data/bin/gpview +43 -5
  16. data/extconf.rb +5 -6
  17. data/gphys.gemspec +34 -0
  18. data/interpo.c +63 -24
  19. data/lib/gphys.rb +2 -0
  20. data/lib/numru/dclext.rb +2636 -0
  21. data/lib/numru/derivative.rb +53 -12
  22. data/lib/numru/ganalysis/eof.rb +4 -0
  23. data/lib/numru/ganalysis/histogram.rb +73 -5
  24. data/lib/numru/ganalysis/met.rb +163 -2
  25. data/lib/numru/ganalysis/planet.rb +230 -20
  26. data/lib/numru/ggraph.rb +147 -2247
  27. data/lib/numru/gphys/assoccoords.rb +19 -3
  28. data/lib/numru/gphys/axis.rb +1 -1
  29. data/lib/numru/gphys/coordmapping.rb +2 -2
  30. data/lib/numru/gphys/derivative.rb +56 -13
  31. data/lib/numru/gphys/gphys.rb +17 -1
  32. data/lib/numru/gphys/gphys_grads_io.rb +6 -5
  33. data/lib/numru/gphys/gphys_grib_io.rb +6 -6
  34. data/lib/numru/gphys/gphys_io.rb +25 -6
  35. data/lib/numru/gphys/grads_gridded.rb +31 -29
  36. data/lib/numru/gphys/grib.rb +13 -9
  37. data/lib/numru/gphys/interpolate.rb +153 -29
  38. data/lib/numru/gphys/unumeric.rb +29 -6
  39. data/lib/numru/gphys/varray.rb +9 -0
  40. data/lib/numru/gphys/varraygrib.rb +70 -8
  41. data/lib/version.rb +3 -0
  42. metadata +247 -531
  43. data/doc/attribute.html +0 -19
  44. data/doc/attributenetcdf.html +0 -15
  45. data/doc/axis.html +0 -376
  46. data/doc/coordmapping.html +0 -111
  47. data/doc/coordtransform.html +0 -36
  48. data/doc/derivative/gphys-derivative.html +0 -80
  49. data/doc/derivative/index.html +0 -21
  50. data/doc/derivative/index.rd +0 -14
  51. data/doc/derivative/math-doc/document/document.css +0 -30
  52. data/doc/derivative/math-doc/document/document.html +0 -57
  53. data/doc/derivative/math-doc/document/images.aux +0 -1
  54. data/doc/derivative/math-doc/document/images.log +0 -385
  55. data/doc/derivative/math-doc/document/images.pl +0 -186
  56. data/doc/derivative/math-doc/document/images.tex +0 -364
  57. data/doc/derivative/math-doc/document/img1.png +0 -0
  58. data/doc/derivative/math-doc/document/img10.png +0 -0
  59. data/doc/derivative/math-doc/document/img11.png +0 -0
  60. data/doc/derivative/math-doc/document/img12.png +0 -0
  61. data/doc/derivative/math-doc/document/img13.png +0 -0
  62. data/doc/derivative/math-doc/document/img14.png +0 -0
  63. data/doc/derivative/math-doc/document/img15.png +0 -0
  64. data/doc/derivative/math-doc/document/img16.png +0 -0
  65. data/doc/derivative/math-doc/document/img17.png +0 -0
  66. data/doc/derivative/math-doc/document/img18.png +0 -0
  67. data/doc/derivative/math-doc/document/img19.png +0 -0
  68. data/doc/derivative/math-doc/document/img2.png +0 -0
  69. data/doc/derivative/math-doc/document/img20.png +0 -0
  70. data/doc/derivative/math-doc/document/img21.png +0 -0
  71. data/doc/derivative/math-doc/document/img22.png +0 -0
  72. data/doc/derivative/math-doc/document/img23.png +0 -0
  73. data/doc/derivative/math-doc/document/img24.png +0 -0
  74. data/doc/derivative/math-doc/document/img25.png +0 -0
  75. data/doc/derivative/math-doc/document/img26.png +0 -0
  76. data/doc/derivative/math-doc/document/img27.png +0 -0
  77. data/doc/derivative/math-doc/document/img28.png +0 -0
  78. data/doc/derivative/math-doc/document/img29.png +0 -0
  79. data/doc/derivative/math-doc/document/img3.png +0 -0
  80. data/doc/derivative/math-doc/document/img30.png +0 -0
  81. data/doc/derivative/math-doc/document/img4.png +0 -0
  82. data/doc/derivative/math-doc/document/img5.png +0 -0
  83. data/doc/derivative/math-doc/document/img6.png +0 -0
  84. data/doc/derivative/math-doc/document/img7.png +0 -0
  85. data/doc/derivative/math-doc/document/img8.png +0 -0
  86. data/doc/derivative/math-doc/document/img9.png +0 -0
  87. data/doc/derivative/math-doc/document/index.html +0 -57
  88. data/doc/derivative/math-doc/document/labels.pl +0 -13
  89. data/doc/derivative/math-doc/document/next.png +0 -0
  90. data/doc/derivative/math-doc/document/next_g.png +0 -0
  91. data/doc/derivative/math-doc/document/node1.html +0 -238
  92. data/doc/derivative/math-doc/document/node2.html +0 -75
  93. data/doc/derivative/math-doc/document/prev.png +0 -0
  94. data/doc/derivative/math-doc/document/prev_g.png +0 -0
  95. data/doc/derivative/math-doc/document/up.png +0 -0
  96. data/doc/derivative/math-doc/document/up_g.png +0 -0
  97. data/doc/derivative/math-doc/document.pdf +0 -0
  98. data/doc/derivative/math-doc/document.tex +0 -158
  99. data/doc/derivative/numru-derivative.html +0 -129
  100. data/doc/ep_flux/ep_flux.html +0 -469
  101. data/doc/ep_flux/ggraph_on_merdional_section.html +0 -71
  102. data/doc/ep_flux/index.html +0 -31
  103. data/doc/ep_flux/index.rd +0 -24
  104. data/doc/ep_flux/math-doc/document/WARNINGS +0 -1
  105. data/doc/ep_flux/math-doc/document/contents.png +0 -0
  106. data/doc/ep_flux/math-doc/document/crossref.png +0 -0
  107. data/doc/ep_flux/math-doc/document/document.css +0 -30
  108. data/doc/ep_flux/math-doc/document/document.html +0 -101
  109. data/doc/ep_flux/math-doc/document/images.aux +0 -1
  110. data/doc/ep_flux/math-doc/document/images.log +0 -1375
  111. data/doc/ep_flux/math-doc/document/images.pl +0 -1328
  112. data/doc/ep_flux/math-doc/document/images.tex +0 -1471
  113. data/doc/ep_flux/math-doc/document/img1.png +0 -0
  114. data/doc/ep_flux/math-doc/document/img10.png +0 -0
  115. data/doc/ep_flux/math-doc/document/img100.png +0 -0
  116. data/doc/ep_flux/math-doc/document/img101.png +0 -0
  117. data/doc/ep_flux/math-doc/document/img102.png +0 -0
  118. data/doc/ep_flux/math-doc/document/img103.png +0 -0
  119. data/doc/ep_flux/math-doc/document/img104.png +0 -0
  120. data/doc/ep_flux/math-doc/document/img105.png +0 -0
  121. data/doc/ep_flux/math-doc/document/img106.png +0 -0
  122. data/doc/ep_flux/math-doc/document/img107.png +0 -0
  123. data/doc/ep_flux/math-doc/document/img108.png +0 -0
  124. data/doc/ep_flux/math-doc/document/img109.png +0 -0
  125. data/doc/ep_flux/math-doc/document/img11.png +0 -0
  126. data/doc/ep_flux/math-doc/document/img110.png +0 -0
  127. data/doc/ep_flux/math-doc/document/img111.png +0 -0
  128. data/doc/ep_flux/math-doc/document/img112.png +0 -0
  129. data/doc/ep_flux/math-doc/document/img113.png +0 -0
  130. data/doc/ep_flux/math-doc/document/img114.png +0 -0
  131. data/doc/ep_flux/math-doc/document/img115.png +0 -0
  132. data/doc/ep_flux/math-doc/document/img116.png +0 -0
  133. data/doc/ep_flux/math-doc/document/img117.png +0 -0
  134. data/doc/ep_flux/math-doc/document/img118.png +0 -0
  135. data/doc/ep_flux/math-doc/document/img119.png +0 -0
  136. data/doc/ep_flux/math-doc/document/img12.png +0 -0
  137. data/doc/ep_flux/math-doc/document/img120.png +0 -0
  138. data/doc/ep_flux/math-doc/document/img121.png +0 -0
  139. data/doc/ep_flux/math-doc/document/img122.png +0 -0
  140. data/doc/ep_flux/math-doc/document/img123.png +0 -0
  141. data/doc/ep_flux/math-doc/document/img124.png +0 -0
  142. data/doc/ep_flux/math-doc/document/img125.png +0 -0
  143. data/doc/ep_flux/math-doc/document/img126.png +0 -0
  144. data/doc/ep_flux/math-doc/document/img127.png +0 -0
  145. data/doc/ep_flux/math-doc/document/img128.png +0 -0
  146. data/doc/ep_flux/math-doc/document/img129.png +0 -0
  147. data/doc/ep_flux/math-doc/document/img13.png +0 -0
  148. data/doc/ep_flux/math-doc/document/img130.png +0 -0
  149. data/doc/ep_flux/math-doc/document/img131.png +0 -0
  150. data/doc/ep_flux/math-doc/document/img132.png +0 -0
  151. data/doc/ep_flux/math-doc/document/img133.png +0 -0
  152. data/doc/ep_flux/math-doc/document/img134.png +0 -0
  153. data/doc/ep_flux/math-doc/document/img135.png +0 -0
  154. data/doc/ep_flux/math-doc/document/img136.png +0 -0
  155. data/doc/ep_flux/math-doc/document/img137.png +0 -0
  156. data/doc/ep_flux/math-doc/document/img138.png +0 -0
  157. data/doc/ep_flux/math-doc/document/img139.png +0 -0
  158. data/doc/ep_flux/math-doc/document/img14.png +0 -0
  159. data/doc/ep_flux/math-doc/document/img140.png +0 -0
  160. data/doc/ep_flux/math-doc/document/img141.png +0 -0
  161. data/doc/ep_flux/math-doc/document/img142.png +0 -0
  162. data/doc/ep_flux/math-doc/document/img143.png +0 -0
  163. data/doc/ep_flux/math-doc/document/img144.png +0 -0
  164. data/doc/ep_flux/math-doc/document/img145.png +0 -0
  165. data/doc/ep_flux/math-doc/document/img146.png +0 -0
  166. data/doc/ep_flux/math-doc/document/img147.png +0 -0
  167. data/doc/ep_flux/math-doc/document/img148.png +0 -0
  168. data/doc/ep_flux/math-doc/document/img149.png +0 -0
  169. data/doc/ep_flux/math-doc/document/img15.png +0 -0
  170. data/doc/ep_flux/math-doc/document/img150.png +0 -0
  171. data/doc/ep_flux/math-doc/document/img151.png +0 -0
  172. data/doc/ep_flux/math-doc/document/img152.png +0 -0
  173. data/doc/ep_flux/math-doc/document/img153.png +0 -0
  174. data/doc/ep_flux/math-doc/document/img154.png +0 -0
  175. data/doc/ep_flux/math-doc/document/img155.png +0 -0
  176. data/doc/ep_flux/math-doc/document/img156.png +0 -0
  177. data/doc/ep_flux/math-doc/document/img157.png +0 -0
  178. data/doc/ep_flux/math-doc/document/img158.png +0 -0
  179. data/doc/ep_flux/math-doc/document/img159.png +0 -0
  180. data/doc/ep_flux/math-doc/document/img16.png +0 -0
  181. data/doc/ep_flux/math-doc/document/img160.png +0 -0
  182. data/doc/ep_flux/math-doc/document/img161.png +0 -0
  183. data/doc/ep_flux/math-doc/document/img162.png +0 -0
  184. data/doc/ep_flux/math-doc/document/img163.png +0 -0
  185. data/doc/ep_flux/math-doc/document/img164.png +0 -0
  186. data/doc/ep_flux/math-doc/document/img165.png +0 -0
  187. data/doc/ep_flux/math-doc/document/img166.png +0 -0
  188. data/doc/ep_flux/math-doc/document/img167.png +0 -0
  189. data/doc/ep_flux/math-doc/document/img168.png +0 -0
  190. data/doc/ep_flux/math-doc/document/img169.png +0 -0
  191. data/doc/ep_flux/math-doc/document/img17.png +0 -0
  192. data/doc/ep_flux/math-doc/document/img170.png +0 -0
  193. data/doc/ep_flux/math-doc/document/img171.png +0 -0
  194. data/doc/ep_flux/math-doc/document/img172.png +0 -0
  195. data/doc/ep_flux/math-doc/document/img173.png +0 -0
  196. data/doc/ep_flux/math-doc/document/img174.png +0 -0
  197. data/doc/ep_flux/math-doc/document/img175.png +0 -0
  198. data/doc/ep_flux/math-doc/document/img176.png +0 -0
  199. data/doc/ep_flux/math-doc/document/img177.png +0 -0
  200. data/doc/ep_flux/math-doc/document/img178.png +0 -0
  201. data/doc/ep_flux/math-doc/document/img179.png +0 -0
  202. data/doc/ep_flux/math-doc/document/img18.png +0 -0
  203. data/doc/ep_flux/math-doc/document/img180.png +0 -0
  204. data/doc/ep_flux/math-doc/document/img181.png +0 -0
  205. data/doc/ep_flux/math-doc/document/img182.png +0 -0
  206. data/doc/ep_flux/math-doc/document/img183.png +0 -0
  207. data/doc/ep_flux/math-doc/document/img184.png +0 -0
  208. data/doc/ep_flux/math-doc/document/img185.png +0 -0
  209. data/doc/ep_flux/math-doc/document/img186.png +0 -0
  210. data/doc/ep_flux/math-doc/document/img187.png +0 -0
  211. data/doc/ep_flux/math-doc/document/img188.png +0 -0
  212. data/doc/ep_flux/math-doc/document/img189.png +0 -0
  213. data/doc/ep_flux/math-doc/document/img19.png +0 -0
  214. data/doc/ep_flux/math-doc/document/img190.png +0 -0
  215. data/doc/ep_flux/math-doc/document/img191.png +0 -0
  216. data/doc/ep_flux/math-doc/document/img192.png +0 -0
  217. data/doc/ep_flux/math-doc/document/img193.png +0 -0
  218. data/doc/ep_flux/math-doc/document/img194.png +0 -0
  219. data/doc/ep_flux/math-doc/document/img195.png +0 -0
  220. data/doc/ep_flux/math-doc/document/img196.png +0 -0
  221. data/doc/ep_flux/math-doc/document/img197.png +0 -0
  222. data/doc/ep_flux/math-doc/document/img198.png +0 -0
  223. data/doc/ep_flux/math-doc/document/img199.png +0 -0
  224. data/doc/ep_flux/math-doc/document/img2.png +0 -0
  225. data/doc/ep_flux/math-doc/document/img20.png +0 -0
  226. data/doc/ep_flux/math-doc/document/img200.png +0 -0
  227. data/doc/ep_flux/math-doc/document/img21.png +0 -0
  228. data/doc/ep_flux/math-doc/document/img22.png +0 -0
  229. data/doc/ep_flux/math-doc/document/img23.png +0 -0
  230. data/doc/ep_flux/math-doc/document/img24.png +0 -0
  231. data/doc/ep_flux/math-doc/document/img25.png +0 -0
  232. data/doc/ep_flux/math-doc/document/img26.png +0 -0
  233. data/doc/ep_flux/math-doc/document/img27.png +0 -0
  234. data/doc/ep_flux/math-doc/document/img28.png +0 -0
  235. data/doc/ep_flux/math-doc/document/img29.png +0 -0
  236. data/doc/ep_flux/math-doc/document/img3.png +0 -0
  237. data/doc/ep_flux/math-doc/document/img30.png +0 -0
  238. data/doc/ep_flux/math-doc/document/img31.png +0 -0
  239. data/doc/ep_flux/math-doc/document/img32.png +0 -0
  240. data/doc/ep_flux/math-doc/document/img33.png +0 -0
  241. data/doc/ep_flux/math-doc/document/img34.png +0 -0
  242. data/doc/ep_flux/math-doc/document/img35.png +0 -0
  243. data/doc/ep_flux/math-doc/document/img36.png +0 -0
  244. data/doc/ep_flux/math-doc/document/img37.png +0 -0
  245. data/doc/ep_flux/math-doc/document/img38.png +0 -0
  246. data/doc/ep_flux/math-doc/document/img39.png +0 -0
  247. data/doc/ep_flux/math-doc/document/img4.png +0 -0
  248. data/doc/ep_flux/math-doc/document/img40.png +0 -0
  249. data/doc/ep_flux/math-doc/document/img41.png +0 -0
  250. data/doc/ep_flux/math-doc/document/img42.png +0 -0
  251. data/doc/ep_flux/math-doc/document/img43.png +0 -0
  252. data/doc/ep_flux/math-doc/document/img44.png +0 -0
  253. data/doc/ep_flux/math-doc/document/img45.png +0 -0
  254. data/doc/ep_flux/math-doc/document/img46.png +0 -0
  255. data/doc/ep_flux/math-doc/document/img47.png +0 -0
  256. data/doc/ep_flux/math-doc/document/img48.png +0 -0
  257. data/doc/ep_flux/math-doc/document/img49.png +0 -0
  258. data/doc/ep_flux/math-doc/document/img5.png +0 -0
  259. data/doc/ep_flux/math-doc/document/img50.png +0 -0
  260. data/doc/ep_flux/math-doc/document/img51.png +0 -0
  261. data/doc/ep_flux/math-doc/document/img52.png +0 -0
  262. data/doc/ep_flux/math-doc/document/img53.png +0 -0
  263. data/doc/ep_flux/math-doc/document/img54.png +0 -0
  264. data/doc/ep_flux/math-doc/document/img55.png +0 -0
  265. data/doc/ep_flux/math-doc/document/img56.png +0 -0
  266. data/doc/ep_flux/math-doc/document/img57.png +0 -0
  267. data/doc/ep_flux/math-doc/document/img58.png +0 -0
  268. data/doc/ep_flux/math-doc/document/img59.png +0 -0
  269. data/doc/ep_flux/math-doc/document/img6.png +0 -0
  270. data/doc/ep_flux/math-doc/document/img60.png +0 -0
  271. data/doc/ep_flux/math-doc/document/img61.png +0 -0
  272. data/doc/ep_flux/math-doc/document/img62.png +0 -0
  273. data/doc/ep_flux/math-doc/document/img63.png +0 -0
  274. data/doc/ep_flux/math-doc/document/img64.png +0 -0
  275. data/doc/ep_flux/math-doc/document/img65.png +0 -0
  276. data/doc/ep_flux/math-doc/document/img66.png +0 -0
  277. data/doc/ep_flux/math-doc/document/img67.png +0 -0
  278. data/doc/ep_flux/math-doc/document/img68.png +0 -0
  279. data/doc/ep_flux/math-doc/document/img69.png +0 -0
  280. data/doc/ep_flux/math-doc/document/img7.png +0 -0
  281. data/doc/ep_flux/math-doc/document/img70.png +0 -0
  282. data/doc/ep_flux/math-doc/document/img71.png +0 -0
  283. data/doc/ep_flux/math-doc/document/img72.png +0 -0
  284. data/doc/ep_flux/math-doc/document/img73.png +0 -0
  285. data/doc/ep_flux/math-doc/document/img74.png +0 -0
  286. data/doc/ep_flux/math-doc/document/img75.png +0 -0
  287. data/doc/ep_flux/math-doc/document/img76.png +0 -0
  288. data/doc/ep_flux/math-doc/document/img77.png +0 -0
  289. data/doc/ep_flux/math-doc/document/img78.png +0 -0
  290. data/doc/ep_flux/math-doc/document/img79.png +0 -0
  291. data/doc/ep_flux/math-doc/document/img8.png +0 -0
  292. data/doc/ep_flux/math-doc/document/img80.png +0 -0
  293. data/doc/ep_flux/math-doc/document/img81.png +0 -0
  294. data/doc/ep_flux/math-doc/document/img82.png +0 -0
  295. data/doc/ep_flux/math-doc/document/img83.png +0 -0
  296. data/doc/ep_flux/math-doc/document/img84.png +0 -0
  297. data/doc/ep_flux/math-doc/document/img85.png +0 -0
  298. data/doc/ep_flux/math-doc/document/img86.png +0 -0
  299. data/doc/ep_flux/math-doc/document/img87.png +0 -0
  300. data/doc/ep_flux/math-doc/document/img88.png +0 -0
  301. data/doc/ep_flux/math-doc/document/img89.png +0 -0
  302. data/doc/ep_flux/math-doc/document/img9.png +0 -0
  303. data/doc/ep_flux/math-doc/document/img90.png +0 -0
  304. data/doc/ep_flux/math-doc/document/img91.png +0 -0
  305. data/doc/ep_flux/math-doc/document/img92.png +0 -0
  306. data/doc/ep_flux/math-doc/document/img93.png +0 -0
  307. data/doc/ep_flux/math-doc/document/img94.png +0 -0
  308. data/doc/ep_flux/math-doc/document/img95.png +0 -0
  309. data/doc/ep_flux/math-doc/document/img96.png +0 -0
  310. data/doc/ep_flux/math-doc/document/img97.png +0 -0
  311. data/doc/ep_flux/math-doc/document/img98.png +0 -0
  312. data/doc/ep_flux/math-doc/document/img99.png +0 -0
  313. data/doc/ep_flux/math-doc/document/index.html +0 -101
  314. data/doc/ep_flux/math-doc/document/internals.pl +0 -258
  315. data/doc/ep_flux/math-doc/document/labels.pl +0 -265
  316. data/doc/ep_flux/math-doc/document/next.png +0 -0
  317. data/doc/ep_flux/math-doc/document/next_g.png +0 -0
  318. data/doc/ep_flux/math-doc/document/node1.html +0 -104
  319. data/doc/ep_flux/math-doc/document/node10.html +0 -164
  320. data/doc/ep_flux/math-doc/document/node11.html +0 -86
  321. data/doc/ep_flux/math-doc/document/node12.html +0 -166
  322. data/doc/ep_flux/math-doc/document/node13.html +0 -897
  323. data/doc/ep_flux/math-doc/document/node14.html +0 -1065
  324. data/doc/ep_flux/math-doc/document/node15.html +0 -72
  325. data/doc/ep_flux/math-doc/document/node16.html +0 -81
  326. data/doc/ep_flux/math-doc/document/node2.html +0 -82
  327. data/doc/ep_flux/math-doc/document/node3.html +0 -91
  328. data/doc/ep_flux/math-doc/document/node4.html +0 -149
  329. data/doc/ep_flux/math-doc/document/node5.html +0 -330
  330. data/doc/ep_flux/math-doc/document/node6.html +0 -99
  331. data/doc/ep_flux/math-doc/document/node7.html +0 -98
  332. data/doc/ep_flux/math-doc/document/node8.html +0 -83
  333. data/doc/ep_flux/math-doc/document/node9.html +0 -140
  334. data/doc/ep_flux/math-doc/document/prev.png +0 -0
  335. data/doc/ep_flux/math-doc/document/prev_g.png +0 -0
  336. data/doc/ep_flux/math-doc/document/up.png +0 -0
  337. data/doc/ep_flux/math-doc/document/up_g.png +0 -0
  338. data/doc/ep_flux/math-doc/document.pdf +0 -0
  339. data/doc/ep_flux/math-doc/document.tex +0 -2018
  340. data/doc/gdir.html +0 -412
  341. data/doc/gdir_client.html +0 -16
  342. data/doc/gdir_connect_ftp-like.html +0 -61
  343. data/doc/gdir_server.html +0 -45
  344. data/doc/ggraph.html +0 -1615
  345. data/doc/gpcat.html +0 -44
  346. data/doc/gpcut.html +0 -41
  347. data/doc/gphys.html +0 -532
  348. data/doc/gphys_fft.html +0 -324
  349. data/doc/gphys_grads_io.html +0 -69
  350. data/doc/gphys_grib_io.html +0 -82
  351. data/doc/gphys_io.html +0 -120
  352. data/doc/gphys_io_common.html +0 -18
  353. data/doc/gphys_netcdf_io.html +0 -283
  354. data/doc/gplist.html +0 -24
  355. data/doc/gpmath.html +0 -51
  356. data/doc/gpmaxmin.html +0 -31
  357. data/doc/gpprint.html +0 -34
  358. data/doc/gpview.html +0 -270
  359. data/doc/grads2nc_with_gphys.html +0 -21
  360. data/doc/grads_gridded.html +0 -307
  361. data/doc/grib.html +0 -144
  362. data/doc/grid.html +0 -212
  363. data/doc/index.html +0 -133
  364. data/doc/index.rd +0 -127
  365. data/doc/netcdf_convention.html +0 -136
  366. data/doc/unumeric.html +0 -176
  367. data/doc/update +0 -64
  368. data/doc/varray.html +0 -299
  369. data/doc/varraycomposite.html +0 -67
data/doc/attribute.html DELETED
@@ -1,19 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/attribute.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label-0" id="label-0">class Attribute &lt; Hash</a></h1><!-- RDLabel: "class Attribute < Hash" -->
11
- <p>A Hash class compatible with NetCDF attributes.</p>
12
- <ul>
13
- <li>Values are restricted to NetCDFAttr values</li>
14
- <li>Keys must be String or Symbol (Symbol is converted into String such that
15
- they are used interchangeably. E.g., attr[:units] == attr["units"] )</li>
16
- </ul>
17
-
18
- </body>
19
- </html>
data/doc/attributenetcdf.html DELETED
@@ -1,15 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/attributenetcdf.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label:0" id="label:0">class Attribute_NetCDF</a></h1><!-- RDLabel: "class Attribute_NetCDF" -->
11
- <p>A class to handle NetCDF attributes in the same way as in the
12
- NumRu::Attribute class.</p>
13
-
14
- </body>
15
- </html>
data/doc/axis.html DELETED
@@ -1,376 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/axis.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label-0" id="label-0">class NumRu::Axis</a></h1><!-- RDLabel: "class NumRu::Axis" -->
11
- <p>A class of to handle a descretized physical coordinate.</p>
12
- <h2><a name="label-1" id="label-1">Overview</a></h2><!-- RDLabel: "Overview" -->
13
- <p>An NumRu::Axis object is meant to represent a dimension in a NumRu::Grid
14
- object, which is used in NumRu::Grid (Hereafter, NumRu:: is omitted).
15
- An Axis has 1-dimensional data on grid-point posisions as a VArray.
16
- In addition, it can have supplementary data (as VArray objects).</p>
17
- <p>Three types of axes are supported in this class:</p>
18
- <pre>1. Simple (mostly point-sampled) axes
19
- 2. Cell-type axes. In this case, grid points are either
20
- at cell boundaries or within the cells (oftern at the center).
21
- 3. Simple ("bare") indexing (without particular physical meaning)</pre>
22
- <p>In most applications, the 1st type would be enough, but
23
- the 2nd type would be useful for some type of numerical
24
- simulation. The 3rd is not physical and may not be considered as
25
- "axes", but this could be convenient for some practical applications.</p>
26
- <h2><a name="label-2" id="label-2">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
27
- <dl>
28
- <dt><h4><a name="label-3" id="label-3"><code>Axis.new(<var>cell</var>=<var>false</var>,<var>bare_index</var>=<var>false</var>,<var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "Axis.new" -->
29
- <dd>
30
- <p>Constructor. The first two arguments are to specify one of the
31
- types explained above.</p>
32
- <p>ARGUMENTS</p>
33
- <ul>
34
- <li>cell (true or false)</li>
35
- <li>bare_index (true or false)</li>
36
- <li>name (String or nil): the default name (when nil) is "noname"</li>
37
- </ul>
38
- <p>RETURN VALUE</p>
39
- <ul>
40
- <li>an Axis</li>
41
- </ul></dd>
42
- <dt><h4><a name="label-4" id="label-4"><code>Axis.defined_operations</code></a></h4></dt><!-- RDLabel: "Axis.defined_operations" -->
43
- <dd>
44
- <p>Returns the name of the methods defined in Axis to do
45
- some operation along the axis.</p>
46
- <p>RETURN VALUE</p>
47
- <ul>
48
- <li>an Array of String. Current default value is ["integrate","average"].</li>
49
- </ul></dd>
50
- <dt><h4><a name="label-5" id="label-5"><code>Axis.humane_messaging = <var>t_or_f</var></code></a></h4></dt><!-- RDLabel: "Axis.humane_messaging = t_or_f" -->
51
- <dd>
52
- If false is given, the [] method is changed to return a naive
53
- straightforward message if the axis is lost. -- By default,
54
- it returns a fancy but sometimes unwanted message if the
55
- axis is the time with since field in the form of yyyy-mm-dd.... </dd>
56
- </dl>
57
- <h2><a name="label-6" id="label-6">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
58
- <dl>
59
- <dt><h4><a name="label-7" id="label-7"><code>name=(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "name=" -->
60
- <dd>
61
- <p>Set a name.</p>
62
- <p>ARGUMENTS</p>
63
- <ul>
64
- <li>name (String)</li>
65
- </ul>
66
- <p>RETURN VALUE</p>
67
- <ul>
68
- <li>name (the argument)</li>
69
- </ul></dd>
70
- <dt><h4><a name="label-8" id="label-8"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
71
- <dd>
72
- <p>Returns the name.</p>
73
- <p>RETURN VALUE</p>
74
- <ul>
75
- <li>a String</li>
76
- </ul></dd>
77
- <dt><h4><a name="label-9" id="label-9"><code>cell?</code></a></h4></dt><!-- RDLabel: "cell?" -->
78
- <dd>
79
- <p>Whether or not self is a cell-type axis.</p>
80
- <p>RETURN VALUE</p>
81
- <ul>
82
- <li>true or false</li>
83
- </ul></dd>
84
- <dt><h4><a name="label-10" id="label-10"><code>cell_center?</code></a></h4></dt><!-- RDLabel: "cell_center?" -->
85
- <dd>
86
- <p>Whether or not self represents data points within the cells (which is
87
- often, but not necessarily, the centers of the cells).</p>
88
- <p>RETURN VALUE</p>
89
- <ul>
90
- <li>true, false, or nil (when the axis is not cell-type)</li>
91
- </ul></dd>
92
- <dt><h4><a name="label-11" id="label-11"><code>cell_bounds?</code></a></h4></dt><!-- RDLabel: "cell_bounds?" -->
93
- <dd>
94
- <p>Whether or not self represents data points at the cell bondaries.</p>
95
- <p>RETURN VALUE</p>
96
- <ul>
97
- <li>true, false, or nil (when the axis is not cell-type)</li>
98
- </ul></dd>
99
- <dt><h4><a name="label-12" id="label-12"><code>bare_index?</code></a></h4></dt><!-- RDLabel: "bare_index?" -->
100
- <dd>
101
- <p>Whether or not self is of the bare-index type.</p>
102
- <p>RETURN VALUE</p>
103
- <ul>
104
- <li>true or false.</li>
105
- </ul></dd>
106
- <dt><h4><a name="label-13" id="label-13"><code>flatten</code></a></h4></dt><!-- RDLabel: "flatten" -->
107
- <dd>
108
- <p>Returns the VArray objects in self as a flat Array. No cloning is made.</p>
109
- <p>RETURN VALUE</p>
110
- <ul>
111
- <li>an Array of VArray objects.</li>
112
- </ul></dd>
113
- <dt><h4><a name="label-14" id="label-14"><code>each_varray</code></a></h4></dt><!-- RDLabel: "each_varray" -->
114
- <dd>
115
- <p>Iterator for each VArray object in self (dependent on <a href="#label-13">flatten</a>.</p>
116
- <p>RETURN VALUE</p>
117
- <ul>
118
- <li>an Array of VArray objects (same as <a href="#label-13">flatten</a>).</li>
119
- </ul></dd>
120
- <dt><h4><a name="label-15" id="label-15"><code>copy</code></a></h4></dt><!-- RDLabel: "copy" -->
121
- <dd>
122
- <p>Make a deep clone onto memory.
123
- All the VArray objects in the return value will be
124
- of the root class of VArray.</p>
125
- <p>RETURN VALUE</p>
126
- <ul>
127
- <li>an Axis</li>
128
- </ul></dd>
129
- <dt><h4><a name="label-16" id="label-16"><code>collect</code></a></h4></dt><!-- RDLabel: "collect" -->
130
- <dd>
131
- <p>This method is like <a href="#label-15">copy</a>, but it is the 'collect'
132
- iterator for each VArray in self (block required).</p>
133
- <p>RETURN VALUE</p>
134
- <ul>
135
- <li>an Axis</li>
136
- </ul></dd>
137
- <dt><h4><a name="label-17" id="label-17"><code>pos=(<var>pos</var>)</code></a></h4></dt><!-- RDLabel: "pos=" -->
138
- <dd>
139
- <p>Sets the grid-point positions (disretized coordinate values).</p>
140
- <p>ARGUMENTS</p>
141
- <ul>
142
- <li>pos (a 1D VArray)</li>
143
- </ul>
144
- <p>RETURN VALUE</p>
145
- <ul>
146
- <li>pos (the argument)</li>
147
- </ul></dd>
148
- <dt><h4><a name="label-18" id="label-18"><code>set_pos(<var>pos</var>)</code></a></h4></dt><!-- RDLabel: "set_pos" -->
149
- <dd>
150
- <p>Sets the grid-point positions (disretized coordinate values).</p>
151
- <p>ARGUMENTS</p>
152
- <ul>
153
- <li>pos (a 1D VArray)</li>
154
- </ul>
155
- <p>RETURN VALUE</p>
156
- <ul>
157
- <li>self</li>
158
- </ul></dd>
159
- <dt><h4><a name="label-19" id="label-19"><code>pos</code></a></h4></dt><!-- RDLabel: "pos" -->
160
- <dd>
161
- <p>Returns the grid-point positions (disretized coordinate values).</p>
162
- <p>RETURN VALUE</p>
163
- <ul>
164
- <li>a VArray (no duplication is made)</li>
165
- </ul></dd>
166
- <dt><h4><a name="label-20" id="label-20"><code>cell_center</code></a></h4></dt><!-- RDLabel: "cell_center" -->
167
- <dd>
168
- <p>When cell-type, returns the positions of grid points at cell centers.</p>
169
- <p>RETURN VALUE</p>
170
- <ul>
171
- <li>a VArray (no duplication is made)</li>
172
- </ul></dd>
173
- <dt><h4><a name="label-21" id="label-21"><code>cell_bounds</code></a></h4></dt><!-- RDLabel: "cell_bounds" -->
174
- <dd>
175
- <p>When cell-type, returns the positions of grid points at cell boundaries.</p>
176
- <p>RETURN VALUE</p>
177
- <ul>
178
- <li>a VArray (no duplication is made)</li>
179
- </ul></dd>
180
- <dt><h4><a name="label-22" id="label-22"><code>length</code></a></h4></dt><!-- RDLabel: "length" -->
181
- <dd>
182
- <p>Returns the length of the axis.</p>
183
- <p>RETURN VALUE</p>
184
- <ul>
185
- <li>an Integer</li>
186
- </ul></dd>
187
- <dt><h4><a name="label-23" id="label-23"><code>set_cell(<var>center</var>, <var>bounds</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "set_cell" -->
188
- <dd>
189
- <p>Set up cell-type axis, by giving both the cell centers and boundaries.
190
- Completion of the set up is deferred until one of <a href="#label-25">set_pos_to_center</a>
191
- and <a href="#label-26">set_pos_to_bounds</a> is called.</p>
192
- <p>ARGUMENTS</p>
193
- <ul>
194
- <li>center (a 1D VArray)</li>
195
- <li>bounds (a 1D VArray)</li>
196
- <li>name (String)</li>
197
- </ul>
198
- <p>RETURN VALUE</p>
199
- <ul>
200
- <li>self</li>
201
- </ul></dd>
202
- <dt><h4><a name="label-24" id="label-24"><code>set_cell_guess_bounds(<var>center</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "set_cell_guess_bounds" -->
203
- <dd>
204
- <p>Set up cell-type axis, by specifing only the cell centers
205
- and deriving bounds with a naive assumption.</p>
206
- <p>ARGUMENTS</p>
207
- <ul>
208
- <li>center (a 1D VArray)</li>
209
- <li>name (String)</li>
210
- </ul>
211
- <p>RETURN VALUE</p>
212
- <ul>
213
- <li>self</li>
214
- </ul></dd>
215
- <dt><h4><a name="label-25" id="label-25"><code>set_pos_to_center</code></a></h4></dt><!-- RDLabel: "set_pos_to_center" -->
216
- <dd>
217
- Set the position of the current axis to the centers of the cells.
218
- This or <a href="#label-26">set_pos_to_bounds</a> is needed to complete the set up
219
- with set_cell_* methods.</dd>
220
- <dt><h4><a name="label-26" id="label-26"><code>set_pos_to_bounds</code></a></h4></dt><!-- RDLabel: "set_pos_to_bounds" -->
221
- <dd>
222
- Set the position of the current axis to the cell bondaries.
223
- This or <a href="#label-25">set_pos_to_center</a> is needed to complete the set up
224
- with set_cell_* methods.</dd>
225
- <dt><h4><a name="label-27" id="label-27"><code>set_aux(<var>name</var>,<var>vary</var>)</code></a></h4></dt><!-- RDLabel: "set_aux" -->
226
- <dd>
227
- <p>Set auxiliary data</p>
228
- <p>ARGUMENTS</p>
229
- <ul>
230
- <li>name (String) a tag to express the kind of the data</li>
231
- <li>vary (a VArray) the data</li>
232
- </ul>
233
- <p>RETURN VALUE</p>
234
- <ul>
235
- <li>vary (the 2nd argument)</li>
236
- </ul></dd>
237
- <dt><h4><a name="label-28" id="label-28"><code>get_aux(<var>name</var>)</code></a></h4></dt><!-- RDLabel: "get_aux" -->
238
- <dd>
239
- <p>Returns auxiliary data</p>
240
- <p>ARGUMENTS</p>
241
- <ul>
242
- <li>name (String) a tag to express the kind of the data (see <a href="#label-27">set_aux</a>).</li>
243
- </ul>
244
- <p>RETURN VALUE</p>
245
- <ul>
246
- <li>a VArray</li>
247
- </ul></dd>
248
- <dt><h4><a name="label-29" id="label-29"><code>aux_names</code></a></h4></dt><!-- RDLabel: "aux_names" -->
249
- <dd>
250
- <p>Returns a list of the names of auxiliary data</p>
251
- <p>RETURN VALUE</p>
252
- <ul>
253
- <li>an Array of String</li>
254
- </ul></dd>
255
- <dt><h4><a name="label-30" id="label-30"><code>to_gphys(<var>datavary1d</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "to_gphys" -->
256
- <dd>
257
- <p>To construct a GPhys object from an Axis.</p>
258
- <p>ARGUMENTS</p>
259
- <ul>
260
- <li>datavary1d (nil or VArray) :
261
- If nil, the position object of self becomes the main data object.
262
- If a VArray, it is used as the main data object.</li>
263
- </ul>
264
- <p>RETURN VALUE</p>
265
- <ul>
266
- <li>a GPhys</li>
267
- </ul></dd>
268
- <dt><h4><a name="label-31" id="label-31"><code>[<var>slicer</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
269
- <dd>
270
- <p>Returns a subset. Its specification is the same as in NArray.</p>
271
- <p>RETURN VALUE</p>
272
- <ul>
273
- <li>an Axis</li>
274
- </ul></dd>
275
- <dt><h4><a name="label-32" id="label-32"><code>cut(<var>coord_cutter</var>)</code></a></h4></dt><!-- RDLabel: "cut" -->
276
- <dd>
277
- <p>Similar to <a href="#label-31">[]</a>, but is based on the physical coordinate.</p>
278
- <p>RETURN VALUE</p>
279
- <ul>
280
- <li>an Axis</li>
281
- </ul></dd>
282
- <dt><h4><a name="label-33" id="label-33"><code>cut_rank_conserving(<var>coord_cutter</var>)</code></a></h4></dt><!-- RDLabel: "cut_rank_conserving" -->
283
- <dd>
284
- <p>Similar to <a href="#label-32">cut</a>, but is always rank-conserving. That is,
285
- a subset specification like [i] is treated as [i..i]</p>
286
- <p>RETURN VALUE</p>
287
- <ul>
288
- <li>an Axis</li>
289
- </ul></dd>
290
- <dt><h4><a name="label-34" id="label-34"><code>integrate(<var>ary</var>,<var>dim</var>)</code></a></h4></dt><!-- RDLabel: "integrate" -->
291
- <dd>
292
- <p>Does integration along the axis</p>
293
- <p>ARGUMENTS</p>
294
- <ul>
295
- <li>ary (NArray or NArray-like multi-dimensional data class)
296
- the data, whose dim-th dimension must have the same length as the axis.</li>
297
- <li>dim (Integer) : The dimension of ary, to which the operation is applied.</li>
298
- </ul>
299
- <p>RETURN VALUE</p>
300
- <ul>
301
- <li>an obejct with the same class as ary, or of a Numeric
302
- class if ary is 1D.</li>
303
- </ul></dd>
304
- <dt><h4><a name="label-35" id="label-35"><code>integ_weight</code></a></h4></dt><!-- RDLabel: "integ_weight" -->
305
- <dd>
306
- Returns the integration weight (whose default is nil).</dd>
307
- <dt><h4><a name="label-36" id="label-36"><code>integ_weight=(<var>wgt</var>)</code></a></h4></dt><!-- RDLabel: "integ_weight=" -->
308
- <dd>
309
- Sets the integration weight (whose default is nil).</dd>
310
- <dt><h4><a name="label-37" id="label-37"><code>average(<var>ary</var>,<var>dim</var>)</code></a></h4></dt><!-- RDLabel: "average" -->
311
- <dd>
312
- <p>Similar to <a href="#label-34">integrate</a>, but does averaging</p>
313
- <p>ARGUMENTS</p>
314
- <ul>
315
- <li>see <a href="#label-34">integrate</a></li>
316
- </ul>
317
- <p>RETURN VALUE</p>
318
- <ul>
319
- <li>see <a href="#label-34">integrate</a></li>
320
- </ul></dd>
321
- <dt><h4><a name="label-38" id="label-38"><code>average_weight</code></a></h4></dt><!-- RDLabel: "average_weight" -->
322
- <dd>
323
- Returns the integration weight (whose default is nil).</dd>
324
- <dt><h4><a name="label-39" id="label-39"><code>average_weight=(<var>wgt</var>)</code></a></h4></dt><!-- RDLabel: "average_weight=" -->
325
- <dd>
326
- Sets the integration weight (whose default is nil).</dd>
327
- <dt><h4><a name="label-40" id="label-40"><code>draw_positive</code></a></h4></dt><!-- RDLabel: "draw_positive" -->
328
- <dd>
329
- <p>Returns the direction to plot the axis, which relies on the
330
- VArray#axis_draw_positive method.</p>
331
- <p>RETURN VALUE</p>
332
- <ul>
333
- <li>one of the following:
334
- <ul>
335
- <li>true: axis should be drawn in the increasing order (to right/upward)</li>
336
- <li>false: axis should be drawn in the decreasing order</li>
337
- <li>nil: not specified</li>
338
- </ul></li>
339
- </ul></dd>
340
- <dt><h4><a name="label-41" id="label-41"><code>cyclic?</code></a></h4></dt><!-- RDLabel: "cyclic?" -->
341
- <dd>
342
- <p>Returns whether the axis is cyclic.
343
- (Relies on the VArray#axis_cyclic? method.)</p>
344
- <p>RETURN VALUE</p>
345
- <ul>
346
- <li>one of the following:
347
- <ul>
348
- <li>true: cyclic</li>
349
- <li>false: not cyclic</li>
350
- <li>nil: not specified</li>
351
- </ul></li>
352
- </ul></dd>
353
- <dt><h4><a name="label-42" id="label-42"><code>modulo</code></a></h4></dt><!-- RDLabel: "modulo" -->
354
- <dd>
355
- <p>Returns the modulo of a cyclic axis
356
- (Relies on the VArray#axis_modulo method.)</p>
357
- <p>RETURN VALUE</p>
358
- <ul>
359
- <li>one of the following:
360
- <ul>
361
- <li>Float if the modulo is defined</li>
362
- <li>nil if modulo is not found</li>
363
- </ul></li>
364
- </ul></dd>
365
- <dt><h4><a name="label-43" id="label-43"><code>cyclic_extendible?</code></a></h4></dt><!-- RDLabel: "cyclic_extendible?" -->
366
- <dd>
367
- <p>Returns whether the axis is cyclic and appropriate to extend.
368
- (Relies on the VArray#axis_cyclic_extendible? method.)</p>
369
- <p>RETURN VALUE</p>
370
- <ul>
371
- <li>true or false</li>
372
- </ul></dd>
373
- </dl>
374
-
375
- </body>
376
- </html>
data/doc/coordmapping.html DELETED
@@ -1,111 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/coordmapping.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label:0" id="label:0">class CoordMapping</a></h1><!-- RDLabel: "class CoordMapping" -->
11
- <h2><a name="label:1" id="label:1">Overview</a></h2><!-- RDLabel: "Overview" -->
12
- <p>Mapping of a coordinate to another. It supports analytic and
13
- grid-point-based mapping in subclasses. Here in this root
14
- CoordMapping class only the invariant unity mapping (or no mapping)
15
- is defined.</p>
16
- <h2><a name="label:2" id="label:2">Class methods</a></h2><!-- RDLabel: "Class methods" -->
17
- <dl>
18
- <dt><h4><a name="label:3" id="label:3"><code>CoordMapping.new</code></a></h4></dt><!-- RDLabel: "CoordMapping.new" -->
19
- <dd>
20
- <p>Constructor. One or more arguments can be needed in subclasses</p></dd>
21
- </dl>
22
- <h2><a name="label:4" id="label:4">Methods</a></h2><!-- RDLabel: "Methods" -->
23
- <dl>
24
- <dt><h4><a name="label:5" id="label:5"><code>map(<var>x</var>,<var>y</var>,<var>z</var>,...)</code></a></h4></dt><!-- RDLabel: "map" -->
25
- <dd>
26
- <p>Maps data point(s)</p>
27
- <p>ARGUMENTS</p>
28
- <ul>
29
- <li>x,y,z,... (one or more Numeric or NArray) : data points.
30
- Mapping is made of [x,y,z,..] (if Numeric) or
31
- [x[0],y[0],z[0],..], [x[1],y[1],z[1],..], ..(if NArray).
32
- Thus, the number of arguments must be equal to the rank of
33
- the mapping. Also, their lengths must agree with each other.</li>
34
- </ul>
35
- <p>RETURN VALUE</p>
36
- <ul>
37
- <li>Array of p,q,r,... (Numeric or NArray) : mapping result</li>
38
- </ul></dd>
39
- <dt><h4><a name="label:6" id="label:6"><code>map_grid(<var>x</var>,<var>y</var>,<var>z</var>,...)</code></a></h4></dt><!-- RDLabel: "map_grid" -->
40
- <dd>
41
- <p>Same as <a href="#label:5">map</a> but for a regular grid.</p>
42
- <p>ARGUMENTS</p>
43
- <ul>
44
- <li>x,y,z,... (one or more 1D NArray) : coordinate values of
45
- a regular grid [x_i, y_j, z_k,..]. The shape of the grid is thus
46
- [x.length, y.length, z.length,..]. This method needs no redefinition,
47
- since it calls <a href="#label:5">map</a> inside.</li>
48
- </ul></dd>
49
- <dt><h4><a name="label:7" id="label:7"><code>inverse_map(<var>p</var>,<var>q</var>,<var>r</var>,...)</code></a></h4></dt><!-- RDLabel: "inverse_map" -->
50
- <dd>
51
- <p>Inversely maps data point(s).</p>
52
- <p>ARGUMENTS</p>
53
- <ul>
54
- <li>p,q,r,... (one or more Numeric or NArray) : data points.
55
- Inverse mapping is made of [p,q,r,..] (if Numeric) or
56
- [p[0],q[0],r[0],..], [p[1],q[1],r[1],..], ..(if NArray).
57
- Thus, the number of arguments must be equal to the rank of
58
- the mapping. Also, if NArray, their lengths must agree with each other.</li>
59
- </ul>
60
- <p>RETURN VALUE</p>
61
- <ul>
62
- <li>Array of x,y,z,... (Numeric or NArray) : inverse mapping result</li>
63
- </ul></dd>
64
- <dt><h4><a name="label:8" id="label:8"><code>inverse</code></a></h4></dt><!-- RDLabel: "inverse" -->
65
- <dd>
66
- <p>Returns the inverse mapping.</p>
67
- <p>RETURN VALUE</p>
68
- <ul>
69
- <li>a CoordMapping</li>
70
- </ul></dd>
71
- <dt><h4><a name="label:9" id="label:9"><code>inversion_rigorous?</code></a></h4></dt><!-- RDLabel: "inversion_rigorous?" -->
72
- <dd>
73
- <p>Whether the inversion is rigorous (analytical)</p>
74
- <p>RETURN VALUE</p>
75
- <ul>
76
- <li>true or false</li>
77
- </ul></dd>
78
- </dl>
79
- <h1><a name="label:10" id="label:10">class LinearCoordMapping &lt; CoordMapping</a></h1><!-- RDLabel: "class LinearCoordMapping < CoordMapping" -->
80
- <h2><a name="label:11" id="label:11">Overview</a></h2><!-- RDLabel: "Overview" -->
81
- <p>Linear coordinate mapping expressed as offset + factor*x,
82
- where offset is a vector (NVect) and factor is a matrix (NMatrix).</p>
83
- <p>Methods listed below are only those newly defined or those whose
84
- arguments are changed.</p>
85
- <h2><a name="label:12" id="label:12">Class methods</a></h2><!-- RDLabel: "Class methods" -->
86
- <dl>
87
- <dt><h4><a name="label:13" id="label:13"><code>LinearCoordMapping.new(<var>offset</var>=<var>nil</var>, <var>factor</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "LinearCoordMapping.new" -->
88
- <dd>
89
- <p>Constructor. If one of offset and factor is not
90
- specified (nil), a zero vector / a unit matrix is used (at least
91
- one of them must be given).</p>
92
- <p>ARGUMENTS</p>
93
- <ul>
94
- <li>offset (NVector or nil) : the offset. Its length represents the rank
95
- of mapping. (if nil a zero vector is assumed)</li>
96
- <li>factor (NMatrix or nil) : the factor. For consistency,
97
- ( offset.length == factor.shape[0] == factor.shape[1] ) is required.</li>
98
- </ul></dd>
99
- </dl>
100
- <h2><a name="label:14" id="label:14">Methods</a></h2><!-- RDLabel: "Methods" -->
101
- <dl>
102
- <dt><h4><a name="label:15" id="label:15"><code>offset</code></a></h4></dt><!-- RDLabel: "offset" -->
103
- <dd>
104
- <p>Returns the internally stored offset.</p></dd>
105
- <dt><h4><a name="label:16" id="label:16"><code>factor</code></a></h4></dt><!-- RDLabel: "factor" -->
106
- <dd>
107
- <p>Returns the internally stored factor.</p></dd>
108
- </dl>
109
-
110
- </body>
111
- </html>
data/doc/coordtransform.html DELETED
@@ -1,36 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../lib/numru/gphys/coordtransform.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label:0" id="label:0">class NumRu::GPhys</a></h1><!-- RDLabel: "class NumRu::GPhys" -->
11
- <p>Additional methods regarding coordinate transformation.</p>
12
- <h2><a name="label:1" id="label:1">Methods</a></h2><!-- RDLabel: "Methods" -->
13
- <dl>
14
- <dt><h4><a name="label:2" id="label:2"><code>coordtransform( <var>coordmapping</var>, <var>axes_to</var>, *<var>dims</var> )</code></a></h4></dt><!-- RDLabel: "coordtransform" -->
15
- <dd>
16
- <p>Coordinate transformation with <var>coordmapping</var> into <var>axes_to</var>.</p>
17
- <p>ARGUMENTS</p>
18
- <ul>
19
- <li><var>coordmapping</var> (CoordMapping) : relation between the new and
20
- original coordinate systems. Mapping is defined from the new one to
21
- the orinal one. If the rank of the mapping is smaller than
22
- the rank of self, <var>dims</var> must be used to specify the
23
- correspondence. e.g., if the rank of the mapping is 2 and that
24
- of self is 3 and the mapping is regarding the first 2 dimensions
25
- of the three, <var>dims</var> must be [0,1].</li>
26
- <li><var>axes_to</var> (Array of Axis) : grid in the new coordinate system.
27
- Its length must be the same as the rank of <var>coordmapping</var></li>
28
- <li><var>dims</var> (integers) : Specifies the dimensions to which
29
- <var>coordmapping</var> is applied. Needed if
30
- <code>self.rank!=coordmapping.rank</code> (neglected otherwise).
31
- The number of integers must agree with the rank of the mapping.</li>
32
- </ul></dd>
33
- </dl>
34
-
35
- </body>
36
- </html>
data/doc/derivative/gphys-derivative.html DELETED
@@ -1,80 +0,0 @@
1
- <?xml version="1.0" ?>
2
- <!DOCTYPE html
3
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
- <html xmlns="http://www.w3.org/1999/xhtml">
6
- <head>
7
- <title>../../lib/numru/gphys/derivative.rb</title>
8
- </head>
9
- <body>
10
- <h1><a name="label:0" id="label:0">module NumRu::GPhys::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative in derivative.rb" -->
11
- <h2><a name="label:1" id="label:1">Index</a></h2><!-- RDLabel: "Index" -->
12
- <ul>
13
- <li><a href="#label:2">module NumRu::GPhys::Derivative</a>
14
- <ul>
15
- <li><a href="#label:3">threepoint_O2nd_deriv</a>
16
- <ul>
17
- <li>First derivative (2nd Order difference use three point.)</li>
18
- </ul></li>
19
- <li><a href="#label:4">cderiv</a>
20
- <ul>
21
- <li>First derivative (using center difference method)</li>
22
- </ul></li>
23
- </ul></li>
24
- </ul>
25
- <h1><a name="label:2" id="label:2">module NumRu::GPhys::Derivative</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative" -->
26
- <p>Module functions of Derivative Operater for GPhys.</p>
27
- <dl>
28
- <dt><a name="label:3" id="label:3"><code>threepoint_O2nd_deriv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>NumRu</var>::<var>Derivative</var>::<var>LINEAR_EXT</var>))</code></a></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
29
- <dd>
30
- <p>Derivate <code>z</code> respect to <code>dim</code> th dimension with 2nd Order difference.
31
- return an NArray which result of the difference <!-- Reference, RDLabel "z" doesn't exist --><em class="label-not-found">z</em><!-- Reference end --> divided difference
32
- <code>x</code> (in other wards, </p>
33
- <pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t)):
34
- now s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
35
- and _{i} represents the suffix of {i} th element in the ((&lt;dim&gt;)) th
36
- dimension of array. ).</pre>
37
- <p>ARGUMENTS</p>
38
- <ul>
39
- <li>z (NArray): a NArray which you want to derivative.</li>
40
- <li>x (NArray): a NArray represents the dimension which derivative respect
41
- to. z.rank must be 1.</li>
42
- <li>dim (Numeric): a Numeric represents the dimention which derivative
43
- respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
44
- <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
45
- <li>bc (Numeric) : a Numeric which represent boundary condition.
46
- now only LINEAR_EXT(=1) supported. LINEAR_EXT load <!-- Reference, RDLabel "b_expand_linear_ext" doesn't exist --><em class="label-not-found">b_expand_linear_ext</em><!-- Reference end -->
47
- which extend boundary with lenear value.</li>
48
- </ul>
49
- <p>RETURN VALUE</p>
50
- <ul>
51
- <li>O2nd_deriv_data (NArray):
52
- (s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
53
- </ul></dd>
54
- <dt><a name="label:4" id="label:4"><code>cderiv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>NumRu</var>::<var>Derivative</var>::<var>LINEAR_EXT</var>)</code></a></dt><!-- RDLabel: "cderiv" -->
55
- <dd>
56
- <p>Derivate <code>gp</code> respect to <code>dim</code> th or <code>dimname</code> dimension
57
- with center difference. return a GPhys which result of the difference
58
- <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> divided difference axis.
59
- ( in other wards, (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1}): now x is
60
- axis array which you wants to respects to, _{i} represents the suffix
61
- of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension of array. ).</p>
62
- <p>ARGUMENTS</p>
63
- <ul>
64
- <li>gp (GPhys): a GPhys which you want to derivative.</li>
65
- <li>dim_or_dimname (Numeric or String): a Numeric or String represents
66
- the dimension which derivate respect to. you can give number count
67
- backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
68
- <li>bc (Numeric) : a Numeric which represent boundary condition.
69
- now only NumRu::Derivative::LINEAR_EXT(=1) supported. LINEAR_EXT load
70
- <!-- Reference, RDLabel "NumRu::Derivative::b_expand_linear_ext" doesn't exist --><em class="label-not-found">NumRu::Derivative::b_expand_linear_ext</em><!-- Reference end --> which extend boundary
71
- with linear value.</li>
72
- </ul>
73
- <p>RETURN VALUE</p>
74
- <ul>
75
- <li>a GPhys</li>
76
- </ul></dd>
77
- </dl>
78
-
79
- </body>
80
- </html>