bioroebe 0.10.80
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- checksums.yaml +7 -0
- data/LICENSE.md +428 -0
- data/README.md +9280 -0
- data/bin/advanced_dotplot +7 -0
- data/bin/align_open_reading_frames +12 -0
- data/bin/all_positions_of_this_nucleotide +7 -0
- data/bin/aminoacid_composition +7 -0
- data/bin/aminoacid_frequencies +12 -0
- data/bin/aminoacid_substitution +7 -0
- data/bin/automatically_rename_this_fasta_file +7 -0
- data/bin/base_composition +7 -0
- data/bin/batch_create_windows_executables +7 -0
- data/bin/biomart_console +11 -0
- data/bin/bioroebe +27 -0
- data/bin/bioroebe_controller +10 -0
- data/bin/bioshell +26 -0
- data/bin/blosum_2D_table +12 -0
- data/bin/calculate_n50_value +12 -0
- data/bin/chunked_display +12 -0
- data/bin/codon_frequency +9 -0
- data/bin/codon_to_aminoacid +30 -0
- data/bin/colourize_this_fasta_sequence +14 -0
- data/bin/compact_fasta_file +7 -0
- data/bin/complement +7 -0
- data/bin/complementary_dna_strand +12 -0
- data/bin/complementary_rna_strand +12 -0
- data/bin/compseq +7 -0
- data/bin/consensus_sequence +17 -0
- data/bin/count_AT +12 -0
- data/bin/count_GC +12 -0
- data/bin/create_random_aminoacids +7 -0
- data/bin/decode_this_aminoacid_sequence +20 -0
- data/bin/deduce_aminoacid_sequence +13 -0
- data/bin/deduce_most_likely_aminoacid_sequence +7 -0
- data/bin/display_aminoacid_table +12 -0
- data/bin/display_open_reading_frames +7 -0
- data/bin/dna_to_aminoacid_sequence +7 -0
- data/bin/dna_to_rna +7 -0
- data/bin/downcase_chunked_display +12 -0
- data/bin/download_this_pdb +7 -0
- data/bin/fasta_index +7 -0
- data/bin/fetch_data_from_uniprot +12 -0
- data/bin/filter_away_invalid_nucleotides +12 -0
- data/bin/find_substring +19 -0
- data/bin/genbank_to_fasta +7 -0
- data/bin/hamming_distance +12 -0
- data/bin/input_as_dna +12 -0
- data/bin/is_palindrome +13 -0
- data/bin/leading_five_prime +7 -0
- data/bin/levensthein +7 -0
- data/bin/longest_ORF +14 -0
- data/bin/longest_substring +12 -0
- data/bin/n_stop_codons_in_this_sequence +15 -0
- data/bin/open_reading_frames +14 -0
- data/bin/overwrite_fasta_header +7 -0
- data/bin/palindrome_2D_structure +7 -0
- data/bin/palindrome_generator +7 -0
- data/bin/parse_fasta +7 -0
- data/bin/partner_nucleotide +9 -0
- data/bin/possible_codons_for_this_aminoacid +12 -0
- data/bin/random_dna_sequence +12 -0
- data/bin/random_sequence +12 -0
- data/bin/raw_hamming_distance +12 -0
- data/bin/return_longest_substring_via_LCS_algorithm +7 -0
- data/bin/reverse_complement +7 -0
- data/bin/reverse_sequence +7 -0
- data/bin/ruler +12 -0
- data/bin/scan_this_input_for_startcodons +12 -0
- data/bin/short_aminoacid_letter_from_long_aminoacid_name +7 -0
- data/bin/show_atomic_composition +7 -0
- data/bin/show_codon_usage +12 -0
- data/bin/show_fasta_header +7 -0
- data/bin/show_nucleotide_sequence +7 -0
- data/bin/show_this_codon_table +7 -0
- data/bin/show_this_dna_sequence +7 -0
- data/bin/showorf +14 -0
- data/bin/simplify_fasta +7 -0
- data/bin/sort_aminoacid_based_on_its_hydrophobicity +7 -0
- data/bin/split_this_fasta_file_into_chromosomes +7 -0
- data/bin/strict_filter_away_invalid_aminoacids +7 -0
- data/bin/taxonomy +63 -0
- data/bin/three_to_one +7 -0
- data/bin/to_rna +7 -0
- data/bin/trailing_three_prime +7 -0
- data/bin/trypsin_digest +7 -0
- data/bin/upcase_this_aminoacid_sequence_and_remove_numbers +7 -0
- data/bioroebe.gemspec +97 -0
- data/doc/IUPAC_aminoacids_code.md +36 -0
- data/doc/IUPAC_nucleotide_code.md +19 -0
- data/doc/README.gen +9237 -0
- data/doc/blosum.md +5 -0
- data/doc/compatibility/BIO_PHP.md +37 -0
- data/doc/compatibility/README.md +3 -0
- data/doc/compatibility/emboss.md +56 -0
- data/doc/extensive_usage_example.md +35 -0
- data/doc/german_names_for_the_aminoacids.md +27 -0
- data/doc/instructions_for_the_taxonomy_subproject.md +504 -0
- data/doc/legacy_paths.md +9 -0
- data/doc/pdb_ATOM_entry.md +33 -0
- data/doc/quality_control/README.md +2 -0
- data/doc/quality_control/commandline_applications.md +13 -0
- data/doc/resources.md +23 -0
- data/doc/setup.rb +1655 -0
- data/doc/statistics/statistics.md +41 -0
- data/doc/todo/README.md +5 -0
- data/doc/todo/bioroebe_GUI_todo.md +15 -0
- data/doc/todo/bioroebe_todo.md +2823 -0
- data/doc/using_biomart.md +258 -0
- data/html/test.html +144 -0
- data/lib/bioroebe/aminoacids/aminoacid_substitution.rb +118 -0
- data/lib/bioroebe/aminoacids/aminoacids_mass_table.rb +118 -0
- data/lib/bioroebe/aminoacids/codon_percentage.rb +189 -0
- data/lib/bioroebe/aminoacids/colourize_hydrophilic_and_hydrophobic_aminoacids.rb +110 -0
- data/lib/bioroebe/aminoacids/create_random_aminoacids.rb +221 -0
- data/lib/bioroebe/aminoacids/deduce_aminoacid_sequence.rb +460 -0
- data/lib/bioroebe/aminoacids/display_aminoacid_table.rb +231 -0
- data/lib/bioroebe/aminoacids/show_hydrophobicity.rb +184 -0
- data/lib/bioroebe/annotations/README.md +2 -0
- data/lib/bioroebe/annotations/create_annotation_format.rb +208 -0
- data/lib/bioroebe/autoinclude.rb +7 -0
- data/lib/bioroebe/base/base.rb +35 -0
- data/lib/bioroebe/base/colours.rb +14 -0
- data/lib/bioroebe/base/colours_for_base/colours_for_base.rb +275 -0
- data/lib/bioroebe/base/commandline_application/README.md +7 -0
- data/lib/bioroebe/base/commandline_application/aminoacids.rb +33 -0
- data/lib/bioroebe/base/commandline_application/commandline_application.rb +37 -0
- data/lib/bioroebe/base/commandline_application/commandline_arguments.rb +144 -0
- data/lib/bioroebe/base/commandline_application/directory.rb +33 -0
- data/lib/bioroebe/base/commandline_application/extract.rb +22 -0
- data/lib/bioroebe/base/commandline_application/misc.rb +485 -0
- data/lib/bioroebe/base/commandline_application/opn.rb +47 -0
- data/lib/bioroebe/base/commandline_application/reset.rb +40 -0
- data/lib/bioroebe/base/commandline_application/warnings.rb +36 -0
- data/lib/bioroebe/base/commandline_application/write_what_into.rb +29 -0
- data/lib/bioroebe/base/initialize.rb +18 -0
- data/lib/bioroebe/base/misc.rb +94 -0
- data/lib/bioroebe/base/namespace.rb +16 -0
- data/lib/bioroebe/base/prototype/README.md +12 -0
- data/lib/bioroebe/base/prototype/e_and_ee.rb +24 -0
- data/lib/bioroebe/base/prototype/misc.rb +108 -0
- data/lib/bioroebe/base/prototype/mkdir.rb +20 -0
- data/lib/bioroebe/base/prototype/prototype.rb +21 -0
- data/lib/bioroebe/base/prototype/reset.rb +26 -0
- data/lib/bioroebe/base/reset.rb +11 -0
- data/lib/bioroebe/biomart/LICENSE.md +27 -0
- data/lib/bioroebe/biomart/attribute.rb +77 -0
- data/lib/bioroebe/biomart/biomart.rb +227 -0
- data/lib/bioroebe/biomart/database.rb +128 -0
- data/lib/bioroebe/biomart/dataset.rb +572 -0
- data/lib/bioroebe/biomart/filter.rb +97 -0
- data/lib/bioroebe/biomart/server.rb +152 -0
- data/lib/bioroebe/blosum/blosum.rb +88 -0
- data/lib/bioroebe/calculate/calculate_blosum_score.rb +145 -0
- data/lib/bioroebe/calculate/calculate_gc_content.rb +301 -0
- data/lib/bioroebe/calculate/calculate_levensthein_distance.rb +100 -0
- data/lib/bioroebe/calculate/calculate_melting_temperature.rb +398 -0
- data/lib/bioroebe/calculate/calculate_melting_temperature_for_more_than_thirteen_nucleotides.rb +304 -0
- data/lib/bioroebe/calculate/calculate_the_position_specific_scoring_matrix.rb +166 -0
- data/lib/bioroebe/cell/README.md +1 -0
- data/lib/bioroebe/cell/cell.rb +63 -0
- data/lib/bioroebe/cleave_and_digest/README.md +2 -0
- data/lib/bioroebe/cleave_and_digest/cleave.rb +80 -0
- data/lib/bioroebe/cleave_and_digest/digestion.rb +75 -0
- data/lib/bioroebe/cleave_and_digest/trypsin.rb +192 -0
- data/lib/bioroebe/codon_tables/README.md +9 -0
- data/lib/bioroebe/codon_tables/frequencies/287_Pseudomonas_aeruginosa.yml +101 -0
- data/lib/bioroebe/codon_tables/frequencies/3702_Arabidopsis_thaliana.yml +77 -0
- data/lib/bioroebe/codon_tables/frequencies/4932_Saccharomyces_cerevisiae.yml +103 -0
- data/lib/bioroebe/codon_tables/frequencies/7227_Drosophila_melanogaster.yml +71 -0
- data/lib/bioroebe/codon_tables/frequencies/83333_Escherichia_coli_K12.yml +103 -0
- data/lib/bioroebe/codon_tables/frequencies/9606_Homo_sapiens.yml +123 -0
- data/lib/bioroebe/codon_tables/frequencies/9685_Felis_catus.yml +78 -0
- data/lib/bioroebe/codon_tables/frequencies/README.md +10 -0
- data/lib/bioroebe/codon_tables/frequencies/parse_frequency_table.rb +337 -0
- data/lib/bioroebe/codons/README.md +28 -0
- data/lib/bioroebe/codons/codon_table.rb +416 -0
- data/lib/bioroebe/codons/codon_tables.rb +123 -0
- data/lib/bioroebe/codons/codons.rb +517 -0
- data/lib/bioroebe/codons/convert_this_codon_to_that_aminoacid.rb +102 -0
- data/lib/bioroebe/codons/detect_minimal_codon.rb +180 -0
- data/lib/bioroebe/codons/determine_optimal_codons.rb +74 -0
- data/lib/bioroebe/codons/possible_codons_for_this_aminoacid.rb +380 -0
- data/lib/bioroebe/codons/sanitize_codon_frequency.rb +144 -0
- data/lib/bioroebe/codons/show_codon_tables.rb +130 -0
- data/lib/bioroebe/codons/show_codon_usage.rb +197 -0
- data/lib/bioroebe/codons/show_this_codon_table.rb +573 -0
- data/lib/bioroebe/codons/start_codons.rb +105 -0
- data/lib/bioroebe/colours/colour_schemes/README.md +10 -0
- data/lib/bioroebe/colours/colour_schemes/array_available_colour_schemes.rb +38 -0
- data/lib/bioroebe/colours/colour_schemes/buried.rb +70 -0
- data/lib/bioroebe/colours/colour_schemes/colour_scheme.rb +101 -0
- data/lib/bioroebe/colours/colour_schemes/colour_scheme_demo.rb +262 -0
- data/lib/bioroebe/colours/colour_schemes/helix.rb +65 -0
- data/lib/bioroebe/colours/colour_schemes/hydropathy.rb +70 -0
- data/lib/bioroebe/colours/colour_schemes/nucleotide.rb +47 -0
- data/lib/bioroebe/colours/colour_schemes/score.rb +112 -0
- data/lib/bioroebe/colours/colour_schemes/simple.rb +42 -0
- data/lib/bioroebe/colours/colour_schemes/strand.rb +65 -0
- data/lib/bioroebe/colours/colour_schemes/taylor.rb +58 -0
- data/lib/bioroebe/colours/colour_schemes/turn.rb +65 -0
- data/lib/bioroebe/colours/colour_schemes/zappo.rb +59 -0
- data/lib/bioroebe/colours/colourize_sequence.rb +262 -0
- data/lib/bioroebe/colours/colours.rb +119 -0
- data/lib/bioroebe/colours/misc_colours.rb +80 -0
- data/lib/bioroebe/colours/rev.rb +41 -0
- data/lib/bioroebe/colours/sdir.rb +21 -0
- data/lib/bioroebe/colours/sfancy.rb +21 -0
- data/lib/bioroebe/colours/sfile.rb +21 -0
- data/lib/bioroebe/colours/simp.rb +21 -0
- data/lib/bioroebe/colours/swarn.rb +29 -0
- data/lib/bioroebe/colours/use_colours.rb +27 -0
- data/lib/bioroebe/configuration/configuration.rb +114 -0
- data/lib/bioroebe/configuration/constants.rb +35 -0
- data/lib/bioroebe/constants/GUIs.rb +79 -0
- data/lib/bioroebe/constants/aminoacids_and_proteins.rb +146 -0
- data/lib/bioroebe/constants/base_directory.rb +120 -0
- data/lib/bioroebe/constants/carriage_return.rb +14 -0
- data/lib/bioroebe/constants/codon_tables.rb +77 -0
- data/lib/bioroebe/constants/database_constants.rb +107 -0
- data/lib/bioroebe/constants/files_and_directories.rb +579 -0
- data/lib/bioroebe/constants/misc.rb +189 -0
- data/lib/bioroebe/constants/newline.rb +14 -0
- data/lib/bioroebe/constants/nucleotides.rb +114 -0
- data/lib/bioroebe/constants/regex.rb +28 -0
- data/lib/bioroebe/constants/roebe.rb +38 -0
- data/lib/bioroebe/constants/row_terminator.rb +16 -0
- data/lib/bioroebe/constants/tabulator.rb +14 -0
- data/lib/bioroebe/constants/unicode.rb +12 -0
- data/lib/bioroebe/constants/urls.rb +50 -0
- data/lib/bioroebe/conversions/README.md +3 -0
- data/lib/bioroebe/conversions/convert_aminoacid_to_dna.rb +298 -0
- data/lib/bioroebe/conversions/dna_to_aminoacid_sequence.rb +569 -0
- data/lib/bioroebe/count/README.md +1 -0
- data/lib/bioroebe/count/count_amount_of_aminoacids.rb +352 -0
- data/lib/bioroebe/count/count_amount_of_nucleotides.rb +491 -0
- data/lib/bioroebe/count/count_at.rb +39 -0
- data/lib/bioroebe/count/count_gc.rb +43 -0
- data/lib/bioroebe/css/README.md +5 -0
- data/lib/bioroebe/css/project.css +121 -0
- data/lib/bioroebe/data/README.md +10 -0
- data/lib/bioroebe/data/bam/README.md +1 -0
- data/lib/bioroebe/data/data.txt +192 -0
- data/lib/bioroebe/data/fasta/GFP_mutant_3_coding_sequence.fasta +12 -0
- data/lib/bioroebe/data/fasta/alu_elements.fasta +42 -0
- data/lib/bioroebe/data/fasta/lady_slippers_orchid.fasta +1197 -0
- data/lib/bioroebe/data/fasta/loxP.fasta +2 -0
- data/lib/bioroebe/data/fasta/ls_orchid.fasta +1197 -0
- data/lib/bioroebe/data/fasta/pax6_in_mouse.fasta +1 -0
- data/lib/bioroebe/data/fasta/test.fasta +7 -0
- data/lib/bioroebe/data/fasta/test_DNA.fasta +1 -0
- data/lib/bioroebe/data/fastq/fastq_example_file.fastq +32 -0
- data/lib/bioroebe/data/fastq/fastq_example_file_SP1.fastq +1000 -0
- data/lib/bioroebe/data/fastq/one_random_fastq_entry.fastq +4 -0
- data/lib/bioroebe/data/genbank/sample_file.genbank +15 -0
- data/lib/bioroebe/data/genbank/standard.fasta +3 -0
- data/lib/bioroebe/data/gff/Escherichia_coli_K12_plasmid_F_DNA_NC_002483.1.gff3 +345 -0
- data/lib/bioroebe/data/gff/sample.gff +2 -0
- data/lib/bioroebe/data/gff/test_gene.gff +4 -0
- data/lib/bioroebe/data/gff/transcripts.gff +16 -0
- data/lib/bioroebe/data/gtf/README.md +1 -0
- data/lib/bioroebe/data/json/example_config.json +48 -0
- data/lib/bioroebe/data/pdb/1VII.pdb +754 -0
- data/lib/bioroebe/data/pdb/ala_phe_ala.pdb +228 -0
- data/lib/bioroebe/data/pdb/rcsb_pdb_1VII.fasta +2 -0
- data/lib/bioroebe/data/phylip/README.md +11 -0
- data/lib/bioroebe/data/phylip/example.phylip +7 -0
- data/lib/bioroebe/data/svg/example.svg +301 -0
- data/lib/bioroebe/databases/README.md +1 -0
- data/lib/bioroebe/databases/download_taxonomy_database.rb +102 -0
- data/lib/bioroebe/dotplots/README.md +5 -0
- data/lib/bioroebe/dotplots/advanced_dotplot.rb +256 -0
- data/lib/bioroebe/dotplots/dotplot.rb +184 -0
- data/lib/bioroebe/electron_microscopy/coordinate_analyzer.rb +191 -0
- data/lib/bioroebe/electron_microscopy/fix_pos_file.rb +102 -0
- data/lib/bioroebe/electron_microscopy/generate_em2em_file.rb +122 -0
- data/lib/bioroebe/electron_microscopy/parse_coordinates.rb +197 -0
- data/lib/bioroebe/electron_microscopy/read_file_xmd.rb +282 -0
- data/lib/bioroebe/electron_microscopy/simple_star_file_generator.rb +131 -0
- data/lib/bioroebe/encoding/README.md +2 -0
- data/lib/bioroebe/encoding/encoding.rb +45 -0
- data/lib/bioroebe/enzymes/README.md +2 -0
- data/lib/bioroebe/enzymes/has_this_restriction_enzyme.rb +46 -0
- data/lib/bioroebe/enzymes/restriction_enzyme.rb +200 -0
- data/lib/bioroebe/enzymes/restriction_enzymes_file.rb +72 -0
- data/lib/bioroebe/enzymes/return_restriction_enzyme_sequence_and_cut_position.rb +80 -0
- data/lib/bioroebe/enzymes/return_sequence_that_is_cut_via_restriction_enzyme.rb +65 -0
- data/lib/bioroebe/enzymes/show_restriction_enzymes.rb +119 -0
- data/lib/bioroebe/exceptions/README.md +2 -0
- data/lib/bioroebe/exceptions/exceptions.rb +17 -0
- data/lib/bioroebe/ext/LICENCE.md +5 -0
- data/lib/bioroebe/ext/README.md +7 -0
- data/lib/bioroebe/ext/main.cpp +45 -0
- data/lib/bioroebe/ext/nucleotide.cpp +24 -0
- data/lib/bioroebe/ext/nussinov_algorithm.cpp +348 -0
- data/lib/bioroebe/ext/sequence +0 -0
- data/lib/bioroebe/ext/sequence.cpp +162 -0
- data/lib/bioroebe/fasta_and_fastq/README.md +6 -0
- data/lib/bioroebe/fasta_and_fastq/autocorrect_the_name_of_this_fasta_file.rb +88 -0
- data/lib/bioroebe/fasta_and_fastq/compact_fasta_file/compact_fasta_file.rb +151 -0
- data/lib/bioroebe/fasta_and_fastq/display_how_many_fasta_entries_are_in_this_directory.rb +111 -0
- data/lib/bioroebe/fasta_and_fastq/download_fasta.rb +248 -0
- data/lib/bioroebe/fasta_and_fastq/fasta_defline/README.md +2 -0
- data/lib/bioroebe/fasta_and_fastq/fasta_defline/fasta_defline.rb +113 -0
- data/lib/bioroebe/fasta_and_fastq/fasta_parser.rb +167 -0
- data/lib/bioroebe/fasta_and_fastq/fastq_format_explainer.rb +131 -0
- data/lib/bioroebe/fasta_and_fastq/length_modifier/length_modifier.rb +87 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/constants.rb +50 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/initialize.rb +86 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/menu.rb +117 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/misc.rb +981 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/parse_fasta.rb +27 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/report.rb +156 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/reset.rb +128 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fasta/run.rb +20 -0
- data/lib/bioroebe/fasta_and_fastq/parse_fastq/parse_fastq.rb +83 -0
- data/lib/bioroebe/fasta_and_fastq/return_fasta_subsection_of_this_file.rb +112 -0
- data/lib/bioroebe/fasta_and_fastq/show_fasta_headers.rb +135 -0
- data/lib/bioroebe/fasta_and_fastq/show_fasta_statistics.rb +188 -0
- data/lib/bioroebe/fasta_and_fastq/simplify_fasta_header/simplify_fasta_header.rb +111 -0
- data/lib/bioroebe/fasta_and_fastq/split_this_fasta_file_into_chromosomes/constants.rb +26 -0
- data/lib/bioroebe/fasta_and_fastq/split_this_fasta_file_into_chromosomes/menu.rb +41 -0
- data/lib/bioroebe/fasta_and_fastq/split_this_fasta_file_into_chromosomes/misc.rb +23 -0
- data/lib/bioroebe/fasta_and_fastq/split_this_fasta_file_into_chromosomes/reset.rb +68 -0
- data/lib/bioroebe/fasta_and_fastq/split_this_fasta_file_into_chromosomes/split_this_fasta_file_into_chromosomes.rb +290 -0
- data/lib/bioroebe/genbank/README.md +1 -0
- data/lib/bioroebe/genbank/genbank_flat_file_format_generator.rb +275 -0
- data/lib/bioroebe/genbank/genbank_parser.rb +291 -0
- data/lib/bioroebe/gene/gene.rb +64 -0
- data/lib/bioroebe/genomes/genome_pattern.rb +165 -0
- data/lib/bioroebe/genomes/genome_retriever.rb +79 -0
- data/lib/bioroebe/gui/experimental/README.md +1 -0
- data/lib/bioroebe/gui/experimental/snapgene/snapgene.rb +147 -0
- data/lib/bioroebe/gui/gtk3/README.md +2 -0
- data/lib/bioroebe/gui/gtk3/alignment/alignment.rb +337 -0
- data/lib/bioroebe/gui/gtk3/aminoacid_composition/aminoacid_composition.rb +510 -0
- data/lib/bioroebe/gui/gtk3/aminoacid_composition/customized_dialog.rb +55 -0
- data/lib/bioroebe/gui/gtk3/anti_sense_strand/anti_sense_strand.config +6 -0
- data/lib/bioroebe/gui/gtk3/anti_sense_strand/anti_sense_strand.rb +29 -0
- data/lib/bioroebe/gui/gtk3/blosum_matrix_viewer/blosum_matrix_viewer.rb +196 -0
- data/lib/bioroebe/gui/gtk3/calculate_cell_numbers_of_bacteria/calculate_cell_numbers_of_bacteria.config +6 -0
- data/lib/bioroebe/gui/gtk3/calculate_cell_numbers_of_bacteria/calculate_cell_numbers_of_bacteria.rb +106 -0
- data/lib/bioroebe/gui/gtk3/controller/controller.rb +406 -0
- data/lib/bioroebe/gui/gtk3/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb +609 -0
- data/lib/bioroebe/gui/gtk3/dna_to_reverse_complement_widget/dna_to_reverse_complement_widget.config +6 -0
- data/lib/bioroebe/gui/gtk3/dna_to_reverse_complement_widget/dna_to_reverse_complement_widget.rb +189 -0
- data/lib/bioroebe/gui/gtk3/fasta_table_widget/fasta_table_widget.rb +245 -0
- data/lib/bioroebe/gui/gtk3/format_converter/format_converter.rb +346 -0
- data/lib/bioroebe/gui/gtk3/gene/gene.rb +182 -0
- data/lib/bioroebe/gui/gtk3/hamming_distance/hamming_distance.config +6 -0
- data/lib/bioroebe/gui/gtk3/hamming_distance/hamming_distance.rb +370 -0
- data/lib/bioroebe/gui/gtk3/levensthein_distance/levensthein_distance.config +6 -0
- data/lib/bioroebe/gui/gtk3/levensthein_distance/levensthein_distance.rb +175 -0
- data/lib/bioroebe/gui/gtk3/nucleotide_analyser/nucleotide_analyser.rb +428 -0
- data/lib/bioroebe/gui/gtk3/parse_pdb_file/parse_pdb_file.rb +342 -0
- data/lib/bioroebe/gui/gtk3/primer_design_widget/primer_design_widget.rb +580 -0
- data/lib/bioroebe/gui/gtk3/protein_to_DNA/protein_to_DNA.config +6 -0
- data/lib/bioroebe/gui/gtk3/protein_to_DNA/protein_to_DNA.rb +182 -0
- data/lib/bioroebe/gui/gtk3/random_sequence/random_sequence.rb +566 -0
- data/lib/bioroebe/gui/gtk3/restriction_enzymes/restriction_enzymes.config +6 -0
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- data/lib/bioroebe/gui/gtk3/show_codon_table/misc.rb +556 -0
- data/lib/bioroebe/gui/gtk3/show_codon_table/show_codon_table.rb +171 -0
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- data/lib/bioroebe/gui/libui/calculate_cell_numbers_of_bacteria/calculate_cell_numbers_of_bacteria.rb +60 -0
- data/lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb +161 -0
- data/lib/bioroebe/gui/libui/dna_to_reverse_complement_widget/dna_to_reverse_complement_widget.rb +76 -0
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- data/lib/bioroebe/gui/shared_code/calculate_cell_numbers_of_bacteria/calculate_cell_numbers_of_bacteria_module.rb +216 -0
- data/lib/bioroebe/gui/shared_code/dna_to_reverse_complement_widget/dna_to_reverse_complement_widget_module.rb +284 -0
- data/lib/bioroebe/gui/shared_code/levensthein_distance/levensthein_distance_module.rb +402 -0
- data/lib/bioroebe/gui/shared_code/protein_to_DNA/protein_to_DNA_module.rb +192 -0
- data/lib/bioroebe/gui/shared_code/show_codon_table/show_codon_table_module.rb +72 -0
- data/lib/bioroebe/gui/shared_code/show_codon_usage/show_codon_usage_module.rb +213 -0
- data/lib/bioroebe/gui/tk/aminoacid_composition/aminoacid_composition.rb +206 -0
- data/lib/bioroebe/gui/tk/blosum_matrix_viewer/blosum_matrix_viewer.rb +140 -0
- data/lib/bioroebe/gui/tk/hamming_distance/hamming_distance.rb +262 -0
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- data/lib/bioroebe/gui/tk/three_to_one/three_to_one.rb +199 -0
- data/lib/bioroebe/gui/unified_widgets/anti_sense_strand/anti_sense_strand.rb +519 -0
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- data/lib/bioroebe/nucleotides/show_nucleotide_sequence.rb +556 -0
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- data/lib/bioroebe/palindromes/palindrome_finder.rb +208 -0
- data/lib/bioroebe/palindromes/palindrome_generator.rb +272 -0
- data/lib/bioroebe/parsers/biolang_parser.rb +156 -0
- data/lib/bioroebe/parsers/blosum_parser.rb +222 -0
- data/lib/bioroebe/parsers/genbank_parser.rb +78 -0
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- data/lib/bioroebe/patterns/analyse_glycosylation_pattern.rb +149 -0
- data/lib/bioroebe/patterns/is_this_sequence_a_EGF2_pattern.rb +66 -0
- data/lib/bioroebe/patterns/profile_pattern.rb +182 -0
- data/lib/bioroebe/patterns/rgg_scanner.rb +160 -0
- data/lib/bioroebe/patterns/scan_for_repeat.rb +157 -0
- data/lib/bioroebe/pdb/download_this_pdb.rb +67 -0
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- data/lib/bioroebe/pdb/report_secondary_structures_from_this_pdb_file.rb +225 -0
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- data/lib/bioroebe/project/project.rb +264 -0
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- data/lib/bioroebe/regexes/README.md +2 -0
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- data/lib/bioroebe/toplevel_methods/calculate_n50_value.rb +57 -0
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- data/lib/bioroebe/toplevel_methods/complement.rb +58 -0
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|
+
TCTTTTTTTCTTTTCTTTTTTTTTTTTTTTA
|
123
|
+
+
|
124
|
+
B?DEEEEEB?DEEB?DEEEEEEEEEEEEE<.
|
125
|
+
@cluster_117:UMI_TCAGTA
|
126
|
+
GCACTACTATATTAGATTGTGTTATCCGTTA
|
127
|
+
+
|
128
|
+
1)+-0.-0-4/82-+*45//.31--0/074.
|
129
|
+
@cluster_124:UMI_CGGCGC
|
130
|
+
GAGACGGAGTTTCACTCTTATTGCCCCCCAG
|
131
|
+
+
|
132
|
+
2///1:>7A7;B3.8C?@>.4C5><;;9A23
|
133
|
+
@cluster_126:UMI_CATGAA
|
134
|
+
CCCCCCCAGATCGGAAAAGCACACGCCTGAA
|
135
|
+
+
|
136
|
+
?.:8<;??=6?==>?:6><0;165B35;66:
|
137
|
+
@cluster_130:UMI_GTAGGG
|
138
|
+
GGTAGAGATAGGGTCTTGCTATGTAGCCCAG
|
139
|
+
+
|
140
|
+
4@:<=8=;B69;@9<9=:?87@:B:8.293;
|
141
|
+
@cluster_131:UMI_AGTGTA
|
142
|
+
GTGAGCACAGGGTACTTTATTGATGGTACAT
|
143
|
+
+
|
144
|
+
;AB=B::>4:<@57=654187B;B:=4;9?9
|
145
|
+
@cluster_134:UMI_TAGTGA
|
146
|
+
TGTTAGACAAAATAAATGTATTTTTTCACTC
|
147
|
+
+
|
148
|
+
1/32++,2668/1/5/<14/69A=@62*-40
|
149
|
+
@cluster_137:UMI_ACGGAC
|
150
|
+
GCAAATATAAACAGGTTTATCTATTCTGTCT
|
151
|
+
+
|
152
|
+
9)75?C?:@6=36:6D<B78.0.5B1<=7.5
|
153
|
+
@cluster_140:UMI_TTACTC
|
154
|
+
GGACCCCCCCCAAAGTCGGAAAACACACCCC
|
155
|
+
+
|
156
|
+
9//865/-71336003/2-566620433.2+
|
157
|
+
@cluster_144:UMI_CAGGGC
|
158
|
+
CCACCCCCCCCAAATCGGAAAAACACACCCC
|
159
|
+
+
|
160
|
+
.A=@<<<<<;AACA=49>@DDD?53==@;85
|
161
|
+
@cluster_148:UMI_GCCTGG
|
162
|
+
CATACCCCCCCCAGATCGGAAAAACACACGC
|
163
|
+
+
|
164
|
+
9@C=@47;;9<A?,<?==>?C;D3><:=?32
|
165
|
+
@cluster_149:UMI_CGGCGC
|
166
|
+
GCCACTATATCTCAAGCATTAAAATACATGT
|
167
|
+
+
|
168
|
+
3=7,.0>6287<2@47/4=5/;<62,38:18
|
169
|
+
@cluster_152:UMI_TCGAAA
|
170
|
+
GCTGTCTAGTCATCCTCGTCGGTCTTCTGCT
|
171
|
+
+
|
172
|
+
B?C@B?A=ABA@??>D=@B==@B?DB?C:?D
|
173
|
+
@cluster_153:UMI_TACAAA
|
174
|
+
TTTTTTTTACACTTTATAACACACTTTTTAT
|
175
|
+
+
|
176
|
+
EEEEEEE3995.6E848@?>=;=3:EEE3/9
|
177
|
+
@cluster_159:UMI_CGGGGG
|
178
|
+
GTCTGCACAGATAAATCTTTCTTCTCATTAC
|
179
|
+
+
|
180
|
+
4:7<+*-/0.,3@B300=;41=3=20=9;-2
|
181
|
+
@cluster_162:UMI_AACGGG
|
182
|
+
CCACAACATTCCATTTATACACAGAACTAAA
|
183
|
+
+
|
184
|
+
>A=?A@?@EB?A@EEC?C=?=??=@@?A@D4
|
185
|
+
@cluster_164:UMI_GCTGAG
|
186
|
+
TATTTTTTTTTTTTTTTTTTTTTTTTGTGTG
|
187
|
+
+
|
188
|
+
??E7EEECEEDEEEECEEEEEEEED20101*
|
189
|
+
@cluster_165:UMI_AGTCGC
|
190
|
+
TTGGCTCTTTTTCGTTTATTGCATGCCCCCC
|
191
|
+
+
|
192
|
+
CC:?<D;D?;<2-<@A<>B>2::B082,9*/
|
193
|
+
@cluster_169:UMI_TGAGCC
|
194
|
+
AAAAATGCCTGGAAATCACTTGCTAGTTACA
|
195
|
+
+
|
196
|
+
ADCB<B:>>CB>@DA?A9?DB:?A=AEC=>3
|
197
|
+
@cluster_172:UMI_GTTTCC
|
198
|
+
GGCTTTGCAACCATACTCCCCCCGGAACCCA
|
199
|
+
+
|
200
|
+
=@?DEC::A@@A@C=?D?<<<<==>@@@<A=
|
201
|
+
@cluster_176:UMI_TGGGCG
|
202
|
+
GGGTTCAAACCCCCAGATCGGAAAAGACACA
|
203
|
+
+
|
204
|
+
<=@BB;AD?96:;@?=:?<=>:>9</,-+-+
|
205
|
+
@cluster_181:UMI_CTTGCC
|
206
|
+
TAAACAGAGTCTTACTCTATTGTCCAGGCTG
|
207
|
+
+
|
208
|
+
/855.7768<0;5.084</9=191/.47/3.
|
209
|
+
@cluster_182:UMI_TATCAG
|
210
|
+
AATGTTCTTTCCTCTGTTGGCTTTGGCCATT
|
211
|
+
+
|
212
|
+
@@41EB05E1>.6140DC5@68EC70=65E3
|
213
|
+
@cluster_186:UMI_GGGTAG
|
214
|
+
CCTTTCCTTTCCCCCAGATCGGAAGAGCACA
|
215
|
+
+
|
216
|
+
>>DEB?>DEB?8<<A?=<?==>@?:=B:===
|
217
|
+
@cluster_189:UMI_GCCTTG
|
218
|
+
TTGGTATATAAACTATTTATTAACAGACAAG
|
219
|
+
+
|
220
|
+
ECB@C?C?C@D??@?EEC9EC@@>?==>A=B
|
221
|
+
@cluster_190:UMI_GGCGGA
|
222
|
+
CAAATCAATAGGTCTTTTATTGCATCATTTA
|
223
|
+
+
|
224
|
+
?AA??AAAC=?@B?DEDB>EC::@?A@EEC=
|
225
|
+
@cluster_197:UMI_AGGATG
|
226
|
+
GGCATATGAAAATTTATTACTACAGTGTTTT
|
227
|
+
+
|
228
|
+
=@:@C?BB@DDAEEC?@C=?A=??AA@DEE=
|
229
|
+
@cluster_207:UMI_TGAACA
|
230
|
+
GTTTCCCCCCCCAAATCGGAAAAACACACCC
|
231
|
+
+
|
232
|
+
;=B:9/193993=>?:88=694;555767+,
|
233
|
+
@cluster_211:UMI_ACTGGC
|
234
|
+
CCCCCCCCAAATCGGAAAAACACACCCCTAA
|
235
|
+
+
|
236
|
+
<<<<<<<AADA?==>@DDC??=?=@<;>@@?
|
237
|
+
@cluster_215:UMI_TCAAAC
|
238
|
+
TCCCCCCCAAATCGGAAAAACACACCCCTAA
|
239
|
+
+
|
240
|
+
3?<<<<<AADA?==>@DDD@?=?=@<<>A<=
|
241
|
+
@cluster_216:UMI_TATTCC
|
242
|
+
GCTTTGCAACCATACTCCCCCCAAGATCGGA
|
243
|
+
+
|
244
|
+
<>D87:-A9@::>;;9?;;<<@14;2;/=.9
|
245
|
+
@cluster_217:UMI_CTCGGC
|
246
|
+
CTAAACTTTTATTGAAAAAAAAACCGAGGAG
|
247
|
+
+
|
248
|
+
>A@D@?DEEC?ECB@DDDDDDD?@=@=A>=B
|
249
|
+
@cluster_218:UMI_TGCTCC
|
250
|
+
CCCCCCCAAAATCGGAAAAACACACCCCTAA
|
251
|
+
+
|
252
|
+
;;;<<;1/7>=?2=;@D<C=<797@7235@<
|
253
|
+
@cluster_219:UMI_ACGTGG
|
254
|
+
TGTAATTAGTAGACATGGTCTTCTACCCATA
|
255
|
+
+
|
256
|
+
A@C@AEC=AC===?@BB@B?DB?A=@<A@C=
|
257
|
+
@cluster_222:UMI_TTTGTG
|
258
|
+
TGAGACAGGGTTCGCCAGCGTGGACCCTTTA
|
259
|
+
+
|
260
|
+
4:/4+5275/34,4-060./54.+0*0472,
|
261
|
+
@cluster_223:UMI_ATTTCC
|
262
|
+
CCTTCTGTTTCTTTTTCCCTTCTTTCCTTCC
|
263
|
+
+
|
264
|
+
;>DB?C@EEB?DEEEB?<<DB?DEB?=D@=:
|
265
|
+
@cluster_228:UMI_GCCTTC
|
266
|
+
CAGGTGTTTTTTCTCCCAGATCGGAAGAGCA
|
267
|
+
+
|
268
|
+
@?A@A@EEEEEB?D?<A?=<?==>@?==B58
|
269
|
+
@cluster_229:UMI_CAAGTA
|
270
|
+
GAGGTTTGCAGCTATTTTATTTACAAGTATA
|
271
|
+
+
|
272
|
+
==A@EEC::?B?A?EEEC?EEC=?A?AB?C=
|
273
|
+
@cluster_232:UMI_TGTTCC
|
274
|
+
TCCCCCCCCCAAATCGGAAAAACACACCCCC
|
275
|
+
+
|
276
|
+
D?<<<<<<<AADA?==>@DDD@?=?=@:<5+
|
277
|
+
@cluster_238:UMI_AGGTTG
|
278
|
+
GCTTCCTACTTTTCAGGTTTAAATTTATCTT
|
279
|
+
+
|
280
|
+
@?DB?>@=?DEEB@?A@CEC@DAEEC???DB
|
281
|
+
@cluster_241:UMI_CTCTCA
|
282
|
+
CAACTTTCCCTTACCCCAGATCGGAAGAGCA
|
283
|
+
+
|
284
|
+
?A@?DEB?<>DC=@<<A?=<?==>@?==B:<
|
285
|
+
@cluster_248:UMI_TTTTTG
|
286
|
+
TAGGAAAAAATGGTTTTGGACATGGGATGAA
|
287
|
+
+
|
288
|
+
8=A>2DDDBABA@9@<BA.5>:BB=>7BA7;
|
289
|
+
@cluster_252:UMI_CAAAAG
|
290
|
+
TACCTTTGAGACAGAGTCTCGCTCTGTCACC
|
291
|
+
+
|
292
|
+
B=@>DECB==:=;==AB?D=B?D?C@BA=@;
|
293
|
+
@cluster_253:UMI_GCGCTC
|
294
|
+
TCGTCACTACCTCCCCGGGTCGGGAGTGGGG
|
295
|
+
+
|
296
|
+
D=@BA=?A<@>D?<<===@B===>=?>B1:2
|
297
|
+
@cluster_254:UMI_TGTGCC
|
298
|
+
TAATGTGCTACTTTTAATTTATTAAAATCCC
|
299
|
+
+
|
300
|
+
A@AB@A:?A=?DEEC@AEEC?E;@DDA??<<
|
301
|
+
@cluster_256:UMI_AGACAG
|
302
|
+
CCGTGATCCTTTTTCAGTGCTTCTACAATGC
|
303
|
+
+
|
304
|
+
>=@AB<??>DEEEBA?AA:?DB?A=?AAB:>
|
305
|
+
@cluster_258:UMI_TGCGGC
|
306
|
+
GTTTGTTTTTTTTTTTTTCCCAGATCGGAAG
|
307
|
+
+
|
308
|
+
>BEC;EEEEEEEEDEEC48-543197=>?.2
|
309
|
+
@cluster_265:UMI_AATTTG
|
310
|
+
TACCCCACCCAAATCGGAATAACACACCCAC
|
311
|
+
+
|
312
|
+
@5?0<;7;845773245>:1<38,1-6*8,/
|
313
|
+
@cluster_272:UMI_ACTCGA
|
314
|
+
AACTTGACACCTTTAAAATAGCATTAAACAG
|
315
|
+
+
|
316
|
+
D72D>?<==1=4EC3DD24/4.@8C1D0/48
|
317
|
+
@cluster_273:UMI_TCGAAA
|
318
|
+
GGTTTTCCTTTTTATTTAATCAAAGACTGGT
|
319
|
+
+
|
320
|
+
A@EEEB?>DEEEC?EEC@A?AAD?=+?CB@8
|
321
|
+
@cluster_281:UMI_CCGATA
|
322
|
+
TAGTCTTAGCATTTACTTTCCCCCCAGATCG
|
323
|
+
+
|
324
|
+
B=A>?DC=B:@EE@=>DEB?<;<<@?=<=8B
|
325
|
+
@cluster_286:UMI_CGGTGC
|
326
|
+
AACAATGATCAATTTTAAGAAATGGGTACAT
|
327
|
+
+
|
328
|
+
A@>AABB<?A@AEEEB@9=@DABB=@C=>@/
|
329
|
+
@cluster_287:UMI_GGATGC
|
330
|
+
GGACATAATAATAACAATTGAATGTCTGCAC
|
331
|
+
+
|
332
|
+
=>=?@C@AC@AC@@?AAECB@AB@B?C::<?
|
333
|
+
@cluster_289:UMI_CTTCTA
|
334
|
+
CCCCCTCCCAAATCGGAAAAACACACCCCTA
|
335
|
+
+
|
336
|
+
@<3<>:?:AAB@?==>@DDC??66:?8;>@2
|
337
|
+
@cluster_290:UMI_TTCCCC
|
338
|
+
ACTTTTGAGACAGGGTCTTGCTCTTGCTATG
|
339
|
+
+
|
340
|
+
=?DEECB===?>A=@B?DC:?D?DC:?A?B:
|
341
|
+
@cluster_293:UMI_CGCACC
|
342
|
+
ATCACTTCTATCAAAGATTGCTCTATTATCT
|
343
|
+
+
|
344
|
+
@?A=?DB?A??;AD?=<DA5?D?A?EA>9:D
|
345
|
+
@cluster_295:UMI_TCGGGG
|
346
|
+
CTTGGTACATGATTTTATAGCAAGCACATTT
|
347
|
+
+
|
348
|
+
?DCB@C=?@BB<EEEC?C=B:A?B:=?@EEB
|
349
|
+
@cluster_296:UMI_TTTTTC
|
350
|
+
GAGATTGAGCCTCGTTGACCAGGCTGGAGCA
|
351
|
+
+
|
352
|
+
4==<>1=5B=<D9?DC66@?77@??=>37)2
|
353
|
+
@cluster_298:UMI_TTGACA
|
354
|
+
GTCAAATATTTATTGAATGGTGGAAAACCAT
|
355
|
+
+
|
356
|
+
/AAADAC>EEC?ECB@ABB@=B>@DD@@=?:
|
357
|
+
@cluster_299:UMI_ATCGCC
|
358
|
+
GCCCCCCCCCAAATCGGAAAAACACACCCCC
|
359
|
+
+
|
360
|
+
?>;;;;<;;?@AA>==>@CCC=;<>7;095+
|
361
|
+
@cluster_301:UMI_GCGGGC
|
362
|
+
GGCTTTGGGAAGCCCCGCGGGGGACCGGCAC
|
363
|
+
+
|
364
|
+
6@>;E4B=-:.1<<;,4429==>,/6-?)24
|
365
|
+
@cluster_302:UMI_TCGGCC
|
366
|
+
TTGCTACTACCACCAAGATCCCCAGACCGGA
|
367
|
+
+
|
368
|
+
?>3=5,-25<74766=,34<;:20,/254.2
|
369
|
+
@cluster_303:UMI_AGTCAA
|
370
|
+
GTCAAAAGAAAAGCGTTTATTTAAAAAAATC
|
371
|
+
+
|
372
|
+
0100CD0745B.2/04DC3C462;DDD6A=1
|
373
|
+
@cluster_309:UMI_TTTCAA
|
374
|
+
ATAGTTTAATGTATTTTAATAGCAAACTTAC
|
375
|
+
+
|
376
|
+
AC=ADEC@AB@C>EEEC@=C;B:@C9>DB=?
|
377
|
+
@cluster_310:UMI_TAAACC
|
378
|
+
CTTATCATTTTAATCGATTTTAATGATTATT
|
379
|
+
+
|
380
|
+
=DC??A@EEEC@A?=@<EEEC@ABB<EC?E5
|
381
|
+
@cluster_316:UMI_TGCTAC
|
382
|
+
TTGAGGGATGGAAGAATATATAATCTATCAA
|
383
|
+
+
|
384
|
+
CCB=8=><BB=4>31=A:C?C@A??@?>A>5
|
385
|
+
@cluster_321:UMI_AGAGGA
|
386
|
+
TTGACGACCGCGCCATGCTGTAATATACAAC
|
387
|
+
+
|
388
|
+
8?9:10+/2:240/.1)59/1/3599-/000
|
389
|
+
@cluster_323:UMI_CAGAGC
|
390
|
+
CCCTTTTTCCCCCAGATCGGAAAAACACACC
|
391
|
+
+
|
392
|
+
<<8DEEEA?<<<6?=<?===@ACC9:<==>.
|
393
|
+
@cluster_330:UMI_TACCGC
|
394
|
+
GAGATGGAGTCTTCTCTCAGATCGGAAGAGC
|
395
|
+
+
|
396
|
+
>0=-AA<::1-5?75:3473454.576-:90
|
397
|
+
@cluster_337:UMI_TTCCCG
|
398
|
+
CCTTCCTATTTATTGCCCAGATCGGAAGAGC
|
399
|
+
+
|
400
|
+
1986:</-4<4-522702:.22674743740
|
401
|
+
@cluster_338:UMI_TTACCC
|
402
|
+
GTTGTCAAATTATCCTTTATTGAAATGTTTT
|
403
|
+
+
|
404
|
+
/3B46=9D<9408895E?17B<:D?1059D6
|
405
|
+
@cluster_339:UMI_GCCCAC
|
406
|
+
AATTTTGTAAAAAATGGTTTATCAATTCCAT
|
407
|
+
+
|
408
|
+
AAEDEC@A@DDDD7BB@EE9??A<6E<?@@?
|
409
|
+
@cluster_340:UMI_GGTTAC
|
410
|
+
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
|
411
|
+
+
|
412
|
+
>DEEEEEEEEEEEEEEEEEEEEEEEEEEEEB
|
413
|
+
@cluster_344:UMI_GAGGTG
|
414
|
+
CTTTTCCTCCGCTGCCCAGATCGGAAGAGCA
|
415
|
+
+
|
416
|
+
?DEEB?>D?=B?C:><A?=<?==>@?==B::
|
417
|
+
@cluster_347:UMI_ATCAAC
|
418
|
+
GACTGAACTAAGTGGTTTTTTTATTAGAGAA
|
419
|
+
+
|
420
|
+
>=?CB@@>A@>AAB85EEDEEC?EB<==9?5
|
421
|
+
@cluster_349:UMI_CTATGA
|
422
|
+
CAGCTTTGCAACCATACTCCCCCCGGAACCC
|
423
|
+
+
|
424
|
+
??B?DEC::A@@A@C=?D?<<<<==>@@@;0
|
425
|
+
@cluster_351:UMI_TGTTAG
|
426
|
+
CTGACTAATATGCCCCAGATCGGAAAAGCAC
|
427
|
+
+
|
428
|
+
?CB=?A@AC?B:><<A?=<?==>@DA?B:=7
|
429
|
+
@cluster_357:UMI_CGCTCA
|
430
|
+
GAGATTTTAATTAATTTTTATAAAATCTGAG
|
431
|
+
+
|
432
|
+
===<EEEC@AEC@AEEEEC?C@DDA??CB=B
|
433
|
+
@cluster_359:UMI_CTACAC
|
434
|
+
CCTAGAAACAGAATAGTCTTTACTTTTACTG
|
435
|
+
+
|
436
|
+
<>A==@D@??=@AC=AB?DEC=?DEEC=?C:
|
437
|
+
@cluster_362:UMI_TTATAA
|
438
|
+
CTTCTTTCCTGTTTTTTTTAAAATCCTTCTT
|
439
|
+
+
|
440
|
+
?DB?DEB?>C@>BDD>CEC@DDA??>DB?=6
|
441
|
+
@cluster_367:UMI_GAGGTG
|
442
|
+
CCCCCCCCCAAATCGGAAAAACACACCCCTA
|
443
|
+
+
|
444
|
+
><<<<<<<AADA?==>@DDD@?=?=@<;>A=
|
445
|
+
@cluster_368:UMI_GGGCGA
|
446
|
+
TAGGTTTTTCAGTGTATTGCTTTGAGGACCC
|
447
|
+
+
|
448
|
+
;=A@CBEE@A?A@>@?E=9>6:B>661=@,1
|
449
|
+
@cluster_373:UMI_ACTGCA
|
450
|
+
CAACTATTTAAAAACGTAAAAACTATTCTTA
|
451
|
+
+
|
452
|
+
=A??A?EEC@DDD??@C@DDD??A9EB?6:5
|
453
|
+
@cluster_375:UMI_ATCCGG
|
454
|
+
CCCCCTCCCCAAATCGGAAAAACACACCCCT
|
455
|
+
+
|
456
|
+
=;<;=D?;;:A?@<==>@C?C9>;?:@0862
|
457
|
+
@cluster_376:UMI_AAGCAC
|
458
|
+
TCTTTGTACAAAATTTTATTAAAGGTCTTTA
|
459
|
+
+
|
460
|
+
9:CDC@<<<ADD>EEE8:E2@D7A@2>DD:5
|
461
|
+
@cluster_381:UMI_GGAACA
|
462
|
+
GAGACGGAGTCTCGCTCTGTTGCCCCCAGAT
|
463
|
+
+
|
464
|
+
;===?=>=AB?D=B?B?>@DC:><<<A?=<8
|
465
|
+
@cluster_382:UMI_CGCGCG
|
466
|
+
CGGTCATAAGTTTAATGAAGTCCCCAGATCG
|
467
|
+
+
|
468
|
+
?=@;A@C@?A@EC@ABB@?;B?<<A?=<=<B
|
469
|
+
@cluster_387:UMI_TGTACG
|
470
|
+
TGCCTTTTGAAACCAAATATTTAATATTTTC
|
471
|
+
+
|
472
|
+
A:>>DEECB@D@@AADAC?EEC@AC?EEEB?
|
473
|
+
@cluster_388:UMI_GCGGGC
|
474
|
+
TCTTCCTCTTCTTTCTCCCCAGATCGGAAGA
|
475
|
+
+
|
476
|
+
C?DB?>D?DB?DEB?D?<<A?=<?==>@?==
|
477
|
+
@cluster_389:UMI_AATTCC
|
478
|
+
TTGCAACCATACTCCCCCCGGAACCCCCCAG
|
479
|
+
+
|
480
|
+
CC:7A?5=3B:?>?<<<;;0.0995;;;721
|
481
|
+
@cluster_390:UMI_CGGTGG
|
482
|
+
AGACAGAATTTCGCTCCTGTAGCCCCCCAGA
|
483
|
+
+
|
484
|
+
=<<:?=@<EE:=B>C?=C?77;<7;926?2:
|
485
|
+
@cluster_391:UMI_TCTATA
|
486
|
+
GTTCATTTTGCCATGACTAAGCCACTATAAA
|
487
|
+
+
|
488
|
+
AEBA@EEEC6>A@BB=?A@?B>A=?A?C@D?
|
489
|
+
@cluster_399:UMI_CAAACA
|
490
|
+
CTTTCTCCAGTTGTTCCCAGATCGGAAGAGC
|
491
|
+
+
|
492
|
+
9DE@?C?A?AEC@E<?<@;7<?===@?<=@9
|
493
|
+
@cluster_400:UMI_TCCGTG
|
494
|
+
GTGCGCAAAAGTTTTATTGTAAAAAAAGACC
|
495
|
+
+
|
496
|
+
00).1(/9;//=D?40=424@DB83::7359
|
497
|
+
@cluster_404:UMI_CTTAAA
|
498
|
+
TTTCACACTGAAATATCCTTTTATTGCAACT
|
499
|
+
+
|
500
|
+
EEBA=?=?CB@DAC???>DEEC?EC:9A@?9
|
501
|
+
@cluster_406:UMI_AACGGC
|
502
|
+
AGATGGAGTCTCGCTCTGTCGCCCAGGCTGG
|
503
|
+
+
|
504
|
+
?=<BB>=AB?D=B?D?C@B=B><A?A@4CB@
|
505
|
+
@cluster_408:UMI_AAACAC
|
506
|
+
CTTTTACACTGGCCACAGAGCGTTTATTGAC
|
507
|
+
+
|
508
|
+
9DEE<=>=?CB@>A=??==B?@EE<?E:A=7
|
509
|
+
@cluster_410:UMI_GTGTTA
|
510
|
+
TGGTGTGTGGGATGGAGTCTTGCTCTGTTGC
|
511
|
+
+
|
512
|
+
BB@A@A@AB=><BB>;AB?DC:?D?C@EC:>
|
513
|
+
@cluster_428:UMI_GGACCG
|
514
|
+
CCTTTTCCTTTCTCTTTTTTTTCTTTAGTGT
|
515
|
+
+
|
516
|
+
>>DEEB?>DEB?D?DEEEEEEB?DEC=AA@?
|
517
|
+
@cluster_434:UMI_CGTCAC
|
518
|
+
GACAGTCTCACTTGGTCACCCCCCAGATCGG
|
519
|
+
+
|
520
|
+
@=??AB?DA=?DCB@BA=@<<<<A>.47=</
|
521
|
+
@cluster_435:UMI_TCGTCA
|
522
|
+
GGCTTTGCAACCATACTCCCCCCGGAACCCA
|
523
|
+
+
|
524
|
+
A@?AEC::@>=A@C=?D9:;;<==>7?<;@9
|
525
|
+
@cluster_438:UMI_CCGTAA
|
526
|
+
AAAGTTCAGCTTTTTATTGAACATGTTATAA
|
527
|
+
+
|
528
|
+
DD?AEBA?B?DEEEC?ECB@@?@B@EC?C@@
|
529
|
+
@cluster_441:UMI_GCATAG
|
530
|
+
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGG
|
531
|
+
+
|
532
|
+
@?D?A===A===@C===A===@A:?A?C=A@
|
533
|
+
@cluster_444:UMI_ATAGAA
|
534
|
+
TGGTACCCCCCCAAATCGGAAAAACACACCC
|
535
|
+
+
|
536
|
+
BB@?=@<<<<;AAAA?==>@DDD??=?=@<;
|
537
|
+
@cluster_448:UMI_GAGAAC
|
538
|
+
GGAAATAAAAGCACAACTATATTTGGGCACC
|
539
|
+
+
|
540
|
+
=>@DAC@AD?>9<?A@?A>C?EECB=@:=@;
|
541
|
+
@cluster_454:UMI_GAATGG
|
542
|
+
ATTTCATAATTCTCCTTTATTAGGCACAGGT
|
543
|
+
+
|
544
|
+
;EEBA>C6?E??D?>DEB:C<<A<:<>?A=1
|
545
|
+
@cluster_455:UMI_GTGAGC
|
546
|
+
CCTTTCTTCTCTCCCCAGATCGGAAAAGCAC
|
547
|
+
+
|
548
|
+
<>DEB?DB?D?D?<<A?=<?==>@C=?B9=@
|
549
|
+
@cluster_456:UMI_ACTGTG
|
550
|
+
GCTAGCTTTCTATTTGTAAACTTTGTGTCGG
|
551
|
+
+
|
552
|
+
>?A=B?BEB?@?EEC@C@D@?DEC@A2A==@
|
553
|
+
@cluster_460:UMI_TCTCAC
|
554
|
+
GCTTTTCTTTCTTTCTCTATTCTTTCTTCCC
|
555
|
+
+
|
556
|
+
1-34461:992967.3./-410983.51-*)
|
557
|
+
@cluster_464:UMI_CCCGTG
|
558
|
+
CCCCCCCCCAAATCGGAAAAACACACCCCTA
|
559
|
+
+
|
560
|
+
><;:<<<;AA>2>=71@DCA=7797@86;@6
|
561
|
+
@cluster_467:UMI_AATCTG
|
562
|
+
GTTGGTTAAATCTTTACTCACAGTAATTTAC
|
563
|
+
+
|
564
|
+
@ECB@EC?CA??DEC=?DA=??AC@AEEC=@
|
565
|
+
@cluster_470:UMI_GCTTTC
|
566
|
+
CTGAGACGAAGTCTCACTCTGTCGCCCAGGC
|
567
|
+
+
|
568
|
+
>CB===?@@?AB?DA=?D?C@B=B><A?A@4
|
569
|
+
@cluster_472:UMI_GAGGCA
|
570
|
+
CCCTTGGACCATAAATTTTTATTGGCAGGTC
|
571
|
+
+
|
572
|
+
@<>DCB>=@A@C@DAEEEEC?ECB@:?A@9=
|
573
|
+
@cluster_475:UMI_TGTCGA
|
574
|
+
GTACCCCCCCCAAATCGGAAAAACACACCCC
|
575
|
+
+
|
576
|
+
1>:@<<<<<11AD?75=3@DDD?><<:@<64
|
577
|
+
@cluster_478:UMI_TGAGTA
|
578
|
+
CTTTGTACAAAATTTTATTAAAGGTCTTTAG
|
579
|
+
+
|
580
|
+
?DEC@C=?ADDAEEEC?EC@D>A@B?DEC=B
|
581
|
+
@cluster_485:UMI_CATTCC
|
582
|
+
CAGCTTTGCAACCATACTCCCCCCCCAGATC
|
583
|
+
+
|
584
|
+
A?B?DEC::A@@A@C=?D?<<<<<<A?=<??
|
585
|
+
@cluster_489:UMI_GGCGTG
|
586
|
+
TGTGTTCCAATTCTTTTATTATTCGGGCCTC
|
587
|
+
+
|
588
|
+
87323771148305=D6-48.:5.,.:.438
|
589
|
+
@cluster_490:UMI_TAGGCC
|
590
|
+
AGAATCTTAAACTAAATCCTTTATTTCAAAA
|
591
|
+
+
|
592
|
+
?=@A??DC@C??A@DA??2DEC?EEB9ADD=
|
593
|
+
@cluster_491:UMI_TTCCCG
|
594
|
+
GAGACAGAGTTTCGCTCTTGTCACCCAGGCT
|
595
|
+
+
|
596
|
+
>===??==AEEB=B?D?DC@BA=@<A?@@5?
|
597
|
+
@cluster_492:UMI_TCGTAC
|
598
|
+
CCCCCCCAGATCGGAAAAGCACACGTCTGAA
|
599
|
+
+
|
600
|
+
<;;7<;@?=<?==>@D;?B:=?=?@2?CB@?
|
601
|
+
@cluster_493:UMI_TTATTG
|
602
|
+
GGCCAACTGAATGTAATCTAGTTTATTCAAC
|
603
|
+
+
|
604
|
+
=@>AA@?CB@AB@C@A??A=AEEC?EBAA@@
|
605
|
+
@cluster_496:UMI_GTATCA
|
606
|
+
ACGAATGAGGCAATTTATTAACCCAGCATGG
|
607
|
+
+
|
608
|
+
@?@@ABB=A@:AAEEC?EC@@@<A?B:@BB@
|
609
|
+
@cluster_503:UMI_CGGTGA
|
610
|
+
CAGACTGAGTTTCACTCTTTGTTGCCCAGGC
|
611
|
+
+
|
612
|
+
??==?CB=AEEBA=?D?DEC@EC:><>?A@8
|
613
|
+
@cluster_510:UMI_TCGTGC
|
614
|
+
GCAACACGTTTATTGAGAGGCAGTTGTGCTC
|
615
|
+
+
|
616
|
+
=:A@?=?@ECC?ECB===:::>AEC@A:?D>
|
617
|
+
@cluster_513:UMI_TCGCTC
|
618
|
+
CACTGTTAAAAACATTTATTCTGATACATTC
|
619
|
+
+
|
620
|
+
A=?C@EB@DDD@?@EEC?EB?CB<C=?@EB4
|
621
|
+
@cluster_519:UMI_CTTAAA
|
622
|
+
GGTTGAGCACAGGGTACTTTATTGATGGTAC
|
623
|
+
+
|
624
|
+
A@ECB=B:=??A=@C=?DEC?ECB<BB@B=>
|
625
|
+
@cluster_521:UMI_TCCATA
|
626
|
+
TGTCCAGCTGCTCCTGATCGGAATACAGCAC
|
627
|
+
+
|
628
|
+
1/22@36;C-03--2674,1-/424122),/
|
629
|
+
@cluster_523:UMI_TGCCTG
|
630
|
+
TTGCAGATTTCCTTCATCAAATTAAAACAGT
|
631
|
+
+
|
632
|
+
4B::?=.DDB9<DBA@?A@DAEC@DD@>?A?
|
633
|
+
@cluster_524:UMI_AGGGAC
|
634
|
+
TTTTTTTTTTTTTTTTTTTTTTTTCTCCAGC
|
635
|
+
+
|
636
|
+
CEEEEEEEEEEEEEEEEEEEEEE415=97;-
|
637
|
+
@cluster_525:UMI_AGGGGC
|
638
|
+
GTTCGTTCAAGTGCACTTTCCAGTACACTTA
|
639
|
+
+
|
640
|
+
@EB=@EBAA?AA::=?DEB?A?AC=?=?DC<
|
641
|
+
@cluster_530:UMI_GACACA
|
642
|
+
GGTGCATATGCATAAGTGGAGCCCAGAGGGC
|
643
|
+
+
|
644
|
+
>@A::@C?B::@C@?A?B>=B>;A?==:1:>
|
645
|
+
@cluster_533:UMI_GGGGTC
|
646
|
+
GGTACCCCCCCCCAGATCGGAAAAACACACC
|
647
|
+
+
|
648
|
+
:@C=@<<<<;;;A?:<>=<9;C@A?:=:=@1
|
649
|
+
@cluster_535:UMI_CCGCTA
|
650
|
+
CTCAGCACCCATTGTAAATTATTTGTGGATG
|
651
|
+
+
|
652
|
+
9DA?B8=?<A7DC@B9D0EC?EEC@A>.<A+
|
653
|
+
@cluster_536:UMI_GTTACA
|
654
|
+
CCCCCCCCCACATCCGAAAACACACCCCCGC
|
655
|
+
+
|
656
|
+
@<;;<<;3A=./46-77@A?/231517900-
|
657
|
+
@cluster_537:UMI_GACTCC
|
658
|
+
GACGCTCACACTTAGTTTTTATTAGCCACAG
|
659
|
+
+
|
660
|
+
7;651C=9<8:D78?D>DE4855<396;1;1
|
661
|
+
@cluster_542:UMI_CCGACA
|
662
|
+
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
|
663
|
+
+
|
664
|
+
EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEB
|
665
|
+
@cluster_545:UMI_ACGATC
|
666
|
+
CTTGCTTCAGTTTTATTTGTACAAATATCAC
|
667
|
+
+
|
668
|
+
79A6?66@;A;EE52EE41?=:A56B<.547
|
669
|
+
@cluster_559:UMI_TCAACG
|
670
|
+
CCGGCACTAAGTCAAGTTCTTTACTTCCCCA
|
671
|
+
+
|
672
|
+
>==@:=?A@?ABAA?AEB?DEC=?DB?<<A=
|
673
|
+
@cluster_563:UMI_GCCTCG
|
674
|
+
CCCCCCCCCCAAATCGGAAAAACACACCCCC
|
675
|
+
+
|
676
|
+
0;;71;;;<@3:??=8>:@;?=>8>9453;/
|
677
|
+
@cluster_564:UMI_TTCGCA
|
678
|
+
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
|
679
|
+
+
|
680
|
+
EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEB
|
681
|
+
@cluster_566:UMI_CGCATA
|
682
|
+
GACGGATGAGTCTTTTAATAGAAAAACACAC
|
683
|
+
+
|
684
|
+
==?=><BB=AB?DEEC<AC==@DBC@>=?;7
|
685
|
+
@cluster_569:UMI_GGCTCC
|
686
|
+
GCAGAACACTTCTTTATTATAGCAACATATA
|
687
|
+
+
|
688
|
+
B:?=@@?=?DB?DEC?EC?C=B:A@?@C?B=
|
689
|
+
@cluster_572:UMI_AAGACC
|
690
|
+
GCAACCATACTCCCCCAGATCGGAAAAGCAC
|
691
|
+
+
|
692
|
+
B:A@@A@C=?D?<<<A?=<?==>@D6?B:=@
|
693
|
+
@cluster_578:UMI_GGGCTA
|
694
|
+
GGTACAGACAGGATCTCACTATGTTGCCCAG
|
695
|
+
+
|
696
|
+
A@C=??==??A><??DA=?A?B@EC:><A?B
|
697
|
+
@cluster_586:UMI_AATTCA
|
698
|
+
CTGCTCAGCTCTTTATTGATTGGTGTGCCCA
|
699
|
+
+
|
700
|
+
??:?>A?@2><<59=E?@<B?5?9@7:8:?6
|
701
|
+
@cluster_587:UMI_TTCCGC
|
702
|
+
CCCCCCCAGATCGGAAAAACACACGCCTGAA
|
703
|
+
+
|
704
|
+
<<<<<<A>=<64=>/DCD2>=><?<<>@;@?
|
705
|
+
@cluster_588:UMI_ACATGG
|
706
|
+
AGTTAGAGTCTCAGTCACCCAGGCTGGAATA
|
707
|
+
+
|
708
|
+
=AE?===A@=D@4AA@=?855A@>;B<@;=5
|
709
|
+
@cluster_591:UMI_CAGGGC
|
710
|
+
CCCGGTCTAATGTTGCTTTTATTATTTTGAA
|
711
|
+
+
|
712
|
+
<<==@B?A@AB@EC:?DEEC?EC?EEECB@@
|
713
|
+
@cluster_592:UMI_GCCGTC
|
714
|
+
TGTGTCTCTCTGTCCCCAGATCGGAAGAGCA
|
715
|
+
+
|
716
|
+
C?@7B?@?C1@;<;598?883846@?0792@
|
717
|
+
@cluster_597:UMI_TTTTGG
|
718
|
+
GCGTAGGGGTTTTAGGTAAATGTCCTTTGAA
|
719
|
+
+
|
720
|
+
9?@C8A==@7AEC,:/C<DA=@B=>6EB1:>
|
721
|
+
@cluster_602:UMI_CTCTCA
|
722
|
+
GGTTTCCGCCCCCCAGATCGGAAGAGCACAC
|
723
|
+
+
|
724
|
+
A@DEB<;:>695:@?=<?=//:6+790<<=:
|
725
|
+
@cluster_604:UMI_TTAAGG
|
726
|
+
GCTACTACCACCAAGATCTGCACCTGCGGCG
|
727
|
+
+
|
728
|
+
;?@=?@=@A=:A<?=;??C99=>>C:>;@;8
|
729
|
+
@cluster_607:UMI_TCCGAC
|
730
|
+
GATTAATGAAAACATTCTTGGCAAATGCTTT
|
731
|
+
+
|
732
|
+
@<EC@ABB?CB?>@DB?DCB;:ADAB::>?6
|
733
|
+
@cluster_613:UMI_CCCGTC
|
734
|
+
TGTTATATTTCACATCATTTTTTCCAGACAT
|
735
|
+
+
|
736
|
+
C3BC/C?EB22-<76><BDEE5B?A:4;:?4
|
737
|
+
@cluster_615:UMI_TGGGAC
|
738
|
+
TCTAAACCTGGAAATTTATCTGGAGTCTTCC
|
739
|
+
+
|
740
|
+
611@D@0>651@DA6E2.?377>-0?:>B/;
|
741
|
+
@cluster_619:UMI_TGTGAC
|
742
|
+
CCAGATCGGAAGAGCACACGTCTGAACTCCA
|
743
|
+
+
|
744
|
+
<A?=<?==>@?=<B:;:=?@B?CB@@?C?85
|
745
|
+
@cluster_621:UMI_TTCGTC
|
746
|
+
GTTTTTTACCCCCTCCCCAGATCGGAAGAGC
|
747
|
+
+
|
748
|
+
@EEEEEC=@:<<>C><<A7<:?=7>@?7=@8
|
749
|
+
@cluster_622:UMI_TGGCTG
|
750
|
+
GAGACAGAGTATTGCTGTGTCGCCCCCCAGA
|
751
|
+
+
|
752
|
+
====??==AC?EC:?=@A@B=B><<;<A?<:
|
753
|
+
@cluster_626:UMI_CGCGCA
|
754
|
+
CTTTTTTTTTTTAAAAACCCCCAGATCGGAA
|
755
|
+
+
|
756
|
+
?DEEEEEEEEEC@DDD?@<<<A==<?4=>@<
|
757
|
+
@cluster_632:UMI_TGGCAA
|
758
|
+
GAGATGGAGTCCCCAGATCGGAAGAGCACAC
|
759
|
+
+
|
760
|
+
===<BB>=AB?<<A?=<?==>@?9=B:=?=@
|
761
|
+
@cluster_634:UMI_AGATCA
|
762
|
+
GTTTTTTTTTTTTCTCTCCTAACACCCCAGA
|
763
|
+
+
|
764
|
+
?EEEEEEEEEEEB?D?D?>@@@?=@<<A;69
|
765
|
+
@cluster_638:UMI_CCTTAG
|
766
|
+
TACTTTAAAATGCTTTATTGGAATTATTTTG
|
767
|
+
+
|
768
|
+
?=>DE>@DC5A:?DEC?E;B>@3EC>EEE:0
|
769
|
+
@cluster_648:UMI_CCTATG
|
770
|
+
TTTTTTCCCCCCAAGATCGGAAAAACACACC
|
771
|
+
+
|
772
|
+
EEEEEB?<<<<A1?=<?9=:@DDD32121@9
|
773
|
+
@cluster_649:UMI_GACGGA
|
774
|
+
TTTTTTTTTTTTTTTTTCACACCCCACACAG
|
775
|
+
+
|
776
|
+
EEEEEEEEEEEEEEEB11,.,/<<6./-//3
|
777
|
+
@cluster_663:UMI_CAAAGG
|
778
|
+
TAAGACCCTCATCAATAGATGGAGATATACA
|
779
|
+
+
|
780
|
+
B@?==@<>DA@?AA@C==<BB>==<C?C=?5
|
781
|
+
@cluster_664:UMI_CGCCGG
|
782
|
+
TCCCCCCCCCAAATCGGAAAAACACACCCCC
|
783
|
+
+
|
784
|
+
B?<<<<<<<=ADA?==>@DDD??=>=@:<5*
|
785
|
+
@cluster_672:UMI_GGACGA
|
786
|
+
ATTTTGTCTTTTGTTTTCATTTTTTCTTGCT
|
787
|
+
+
|
788
|
+
AEEDB@A?DEEC@BEEBA;EEEEEB?DC:?D
|
789
|
+
@cluster_674:UMI_CGTTTC
|
790
|
+
AGACAAGTTCTCGCTCTGTCACCCAGGCTGG
|
791
|
+
+
|
792
|
+
?==?A?AEB?D=B?D?C@BA=@<A?A@?CB@
|
793
|
+
@cluster_675:UMI_GTATTG
|
794
|
+
CAGTTGTCAAATGATCCTTTATTGAAATGTT
|
795
|
+
+
|
796
|
+
:?AEC@BAADABB<??>DEC?ECB@DAB@DB
|
797
|
+
@cluster_676:UMI_AGGTAG
|
798
|
+
TGGCATTTTTAATTTAGGTTTGTTTTATTTA
|
799
|
+
+
|
800
|
+
AB@:@EEEEC@AEEC=A@EEC@EEEC?EEC=
|
801
|
+
@cluster_677:UMI_CCTGGA
|
802
|
+
GCACCCCCTCCCAGATCGGAAAAACACACCC
|
803
|
+
+
|
804
|
+
B:=@<<<>D?<A?,<?==>@DDD>?=?=@:>
|
805
|
+
@cluster_680:UMI_CCGCTA
|
806
|
+
TCTGATCTGACATTATTTCTATATTTTTAGA
|
807
|
+
+
|
808
|
+
??CB<??CB=?@EC?EEB?A?C?EEEEC===
|
809
|
+
@cluster_681:UMI_GGACCC
|
810
|
+
AGCTTTGCAACCATACTCCCCCCCCAGATCG
|
811
|
+
+
|
812
|
+
?B?DEC::A@@A@C=?D?<<<<<<A?=<?=B
|
813
|
+
@cluster_682:UMI_GTGCAC
|
814
|
+
GTTTTTTTTTTTTTTTTTACCCCCCCCACAC
|
815
|
+
+
|
816
|
+
8EEEEEEEEEEEEEEEEB=@<<<<<;=4/40
|
817
|
+
@cluster_684:UMI_GTTCAC
|
818
|
+
TGCAACCATACTCCCCCCCCCAGATCGGAAT
|
819
|
+
+
|
820
|
+
C::A@=A@C=?D?<3<<<<<A?=;?4.>@A/
|
821
|
+
@cluster_687:UMI_ACGAAC
|
822
|
+
GACACTACTCTCCCACATCGCGAGAGAGCAC
|
823
|
+
+
|
824
|
+
67/-01:5<::?:@5120+6531.8--2-68
|
825
|
+
@cluster_689:UMI_CCTTCA
|
826
|
+
AAAGAAGTAAGCCTTTATTTCCTTGTTTTGC
|
827
|
+
+
|
828
|
+
DD?=@?AC@?B>>DEC?EEB?>DC@EEEC:;
|
829
|
+
@cluster_690:UMI_ATTTAG
|
830
|
+
GTTTTTTTTTTTTTTTTTTTTTTTTTTTCTG
|
831
|
+
+
|
832
|
+
1EEEEEEEEEEEEEEEEEEEEEEEEEEB?:)
|
833
|
+
@cluster_692:UMI_GCGTCC
|
834
|
+
GAGGTGAAGTTTCACTTTGTCCCCAGATCGA
|
835
|
+
+
|
836
|
+
@=@@:?<3@D=A@27DDC7>?<;A?14;2<,
|
837
|
+
@cluster_693:UMI_CGGCCA
|
838
|
+
CTTTTGAGGCTTTTTCGTTGCCAGCAAGGGC
|
839
|
+
+
|
840
|
+
?DEECB=A@?DEEEB=@EC:>A?B:A?A=@<
|
841
|
+
@cluster_699:UMI_TGTTTC
|
842
|
+
CTTTCTTTCTTTCTTTTGTTTCTTTCTTGCT
|
843
|
+
+
|
844
|
+
>DEB?DEB?DEB?DEEC@EEB?DEB?DC:?D
|
845
|
+
@cluster_700:UMI_ATCGAA
|
846
|
+
GCAGTTTTTACATTTATTTAAACAGAAAACG
|
847
|
+
+
|
848
|
+
B:?AEEEEC=>@EEB?EEC@4>>?=@DD??B
|
849
|
+
@cluster_706:UMI_CCACGG
|
850
|
+
GCCCTTCTGCTCCCCCAGATCGGAAGAGCAC
|
851
|
+
+
|
852
|
+
@><>DB?C:?D?<<<A?=<?==>@?1=B:=@
|
853
|
+
@cluster_711:UMI_CTCCGA
|
854
|
+
ATTAATGAAAACATTCTTGGCAAATGCTTTC
|
855
|
+
+
|
856
|
+
=EC@ABB6DD@??=B?DCB@:@DAB5?<EB=
|
857
|
+
@cluster_714:UMI_ACGCGA
|
858
|
+
TTTTTCCCCCCCCCAGATCGAAAAAGCACAC
|
859
|
+
+
|
860
|
+
EEEEA?<<<<<<;8?=<?=@8DD4?:8<><@
|
861
|
+
@cluster_715:UMI_CTGTCG
|
862
|
+
TTTTGGGGCCCCCCCCAGATCGGAAAAGCAC
|
863
|
+
+
|
864
|
+
EEEA1<<@>;<<<<<A6=;=:67>C@=B869
|
865
|
+
@cluster_716:UMI_GGGGTC
|
866
|
+
CCCCCCCCAAAATCGAAAAAACACACCCCTA
|
867
|
+
+
|
868
|
+
<<<<<<;<1C?0.4@/DDA:;>3>8=;626<
|
869
|
+
@cluster_717:UMI_CAGCCC
|
870
|
+
TCAGCTTTGCAACCATACTCCCCCCGGAACC
|
871
|
+
+
|
872
|
+
DA?B?DEC:8A?@A@C=?D?<<<<;=>@@@;
|
873
|
+
@cluster_719:UMI_GAGAAA
|
874
|
+
GGGAGTAGTGTCTTTATTCATTAAAGCCTGA
|
875
|
+
+
|
876
|
+
A=>=AC=AA@B?DEC?EBA@EC@D?B>>CB=
|
877
|
+
@cluster_721:UMI_TTGTTC
|
878
|
+
GAGACGGAGACTCACTCTGTCGCCCCCCAGA
|
879
|
+
+
|
880
|
+
3===>:><=<8AA683<;5912.<<;;>3./
|
881
|
+
@cluster_722:UMI_TCCATA
|
882
|
+
GTTTTTTTTTTTTTTTTCAGTAAGCACAGGT
|
883
|
+
+
|
884
|
+
AEEEEEEEEEEEEEEEBA?@:@?B:=??A@4
|
885
|
+
@cluster_727:UMI_TTTACC
|
886
|
+
TTCTGAGCCTAAATGCCCTCAAAGCCCGTCC
|
887
|
+
+
|
888
|
+
DB?CB=B-=?@DA@7>;>B8AD8?>;7:<?*
|
889
|
+
@cluster_730:UMI_ACCTTG
|
890
|
+
TCCCCCCCCCCAAATCGGAAAAACACACCCC
|
891
|
+
+
|
892
|
+
B?<<<<<;<76AB@?=<5@DCD??=>2@;;6
|
893
|
+
@cluster_731:UMI_GTCACA
|
894
|
+
TTGCTTCACTGACTTAACTCAAATTTCTTAA
|
895
|
+
+
|
896
|
+
EC:?DBA;?CB=?=B@@?DAADAEEB?AC@?
|
897
|
+
@cluster_732:UMI_AGGAAG
|
898
|
+
CCCCCCCCCAAATCGGAAAAACACACCCCTA
|
899
|
+
+
|
900
|
+
6<<<<<<<AADA?==>@DAD?><?=@:;>@0
|
901
|
+
@cluster_742:UMI_GAGACC
|
902
|
+
TGAGTGGGAGTCTCGCTCTGTACCCCAGGTG
|
903
|
+
+
|
904
|
+
21,005-;,252605262746,/2231;54/
|
905
|
+
@cluster_756:UMI_TCGATA
|
906
|
+
CTTTGTTTCAAGTTTTAATCAAAGCTTGTAT
|
907
|
+
+
|
908
|
+
?DEC@EEBAA?AEEEC@A?AAD?B?DC@C??
|
909
|
+
@cluster_757:UMI_TTGCAA
|
910
|
+
TCTTTGCACACTTATATTTTTTTTTGTGTTT
|
911
|
+
+
|
912
|
+
?4?<<6:+?:16@3707EEE<E;EC1303DB
|
913
|
+
@cluster_764:UMI_ACGACC
|
914
|
+
CACGCTTAATTCACTTTATTTTTCCCCAGAT
|
915
|
+
+
|
916
|
+
>=?B?DC@AEBA=?DEC?EEEEB?<<A<=<9
|
917
|
+
@cluster_766:UMI_TATTGG
|
918
|
+
CTTCCCAGTAACTGAGAGAAAATTACCATTC
|
919
|
+
+
|
920
|
+
?DB?<A?AC@@?CB====@DDAEC=@A@EB;
|
921
|
+
@cluster_772:UMI_AGGAAA
|
922
|
+
AAGACCACAAAGATTTAATTTAAAATCACAG
|
923
|
+
+
|
924
|
+
D?==@A=?AD?=<EEC@AEEC@DDA?A=??B
|
925
|
+
@cluster_775:UMI_CCTGCA
|
926
|
+
GTGCAAAAACTGAATGTAGTCAATGGTCTTT
|
927
|
+
+
|
928
|
+
AA::ADDD?>CB>AB?C:ABAAABB@><@EA
|
929
|
+
@cluster_778:UMI_TTGGGC
|
930
|
+
ATTTAACATGAGGAAACCCCAGATCGGAAGA
|
931
|
+
+
|
932
|
+
@EEA@?>@BB;A>@D<@;:64=8?==>@?<6
|
933
|
+
@cluster_780:UMI_GTTGCA
|
934
|
+
GGAGTTCCTAACCCAACAGTAATATCATTAG
|
935
|
+
+
|
936
|
+
7.-072.0/7//33377781/46-/1371-<
|
937
|
+
@cluster_787:UMI_GCAGTC
|
938
|
+
TGATAGCATTGCGAGACGCTGGAGCCGGAGC
|
939
|
+
+
|
940
|
+
CB<C=B:;EC:?@===?B?CB><@>==>6A9
|
941
|
+
@cluster_792:UMI_CGGCAC
|
942
|
+
TGTCACCATCCTTCTTTTCTTCTTCCTCATC
|
943
|
+
+
|
944
|
+
@6>6,430:45?=;CDD:7A:7DA<9<7:70
|
945
|
+
@cluster_794:UMI_GCATCC
|
946
|
+
CCCCCCCAGATCGGAAAAGCACACGCCTGAA
|
947
|
+
+
|
948
|
+
;;9<<<A?=8>===@D;?B:=<=?B:>C><8
|
949
|
+
@cluster_796:UMI_ATTTGA
|
950
|
+
TAGTCAGCTATTTAATTAGGTTCTTAAGACA
|
951
|
+
+
|
952
|
+
@=ABA?B?A?EEC@AEC=A@EB?DC@?==?8
|
953
|
+
@cluster_799:UMI_CGTGCA
|
954
|
+
GCTCGTCTTTCTCCCCCAGATCGGAACAGTA
|
955
|
+
+
|
956
|
+
=.B10486=:2989;58/-4=255::.=684
|
957
|
+
@cluster_805:UMI_CGTGGG
|
958
|
+
GTACTGCTCAAGCGCTGTCTATATCTCTCTA
|
959
|
+
+
|
960
|
+
04904,.12:08/2/>16/74@4213<8.0.
|
961
|
+
@cluster_807:UMI_GATATG
|
962
|
+
TTTTTCCACACGTAAAATTTATAAACATTTA
|
963
|
+
+
|
964
|
+
83EEA3:620725;DD5CAB:53C3=/472-
|
965
|
+
@cluster_809:UMI_CTTTTA
|
966
|
+
CACAAGGAATATCATTTTATTACTGTAATCA
|
967
|
+
+
|
968
|
+
?=?A?A>@AC??A@EEEC?EC=?C@C@A?A=
|
969
|
+
@cluster_810:UMI_TCTCGC
|
970
|
+
GAAGAGCACACGTCTGAACTCCAGTCACCGT
|
971
|
+
+
|
972
|
+
9?<9;@23538<88>@348<396;;365/=4
|
973
|
+
@cluster_814:UMI_GGGCTG
|
974
|
+
TTCTAGGTCCAATGGTAGTTTTTATTCCCCA
|
975
|
+
+
|
976
|
+
DB?A=A@B?AAABB@@=A>DDEC?EB?;;@;
|
977
|
+
@cluster_816:UMI_ATGTAG
|
978
|
+
TGAGACAACATCTCACTCTGTTACCCCCCAA
|
979
|
+
+
|
980
|
+
AA===>A?:@>?C@=?C?C@BC3/;<;<A1.
|
981
|
+
@cluster_819:UMI_AGTATA
|
982
|
+
GCTGTAGGAACAGCAGTCTTGGTGGTTAGCA
|
983
|
+
+
|
984
|
+
B?C@C=A>@?>?B:?AB?DCB@AB@EC=B,<
|
985
|
+
@cluster_823:UMI_TTTTTA
|
986
|
+
CCATTATAATAGCCATCTTTATTTGTAAAAA
|
987
|
+
+
|
988
|
+
?A@EC?C@AC=B>A@??DEC?EEC@C@DDD:
|
989
|
+
@cluster_824:UMI_GAGTCC
|
990
|
+
AGCTTTGCAACCATACTCCCCCCGGAACCCA
|
991
|
+
+
|
992
|
+
?B?DEC::A@@A@C=?D?<<<<==>@@@<@=
|
993
|
+
@cluster_828:UMI_CTCGTA
|
994
|
+
GCCCCCCCCCAAATCGGAAAAACACACCCCC
|
995
|
+
+
|
996
|
+
B><<<<<<<AADA?==>@DDD?>=>=@;<<3
|
997
|
+
@cluster_834:UMI_TTAAGG
|
998
|
+
AGGGTGGGGGATCACATTTATTGTATTGAGG
|
999
|
+
+
|
1000
|
+
=A=@AB===>4?A=??EEB?EB@C?ECB=A?
|