sequenzo 0.1.18__cp310-cp310-win_amd64.whl → 0.1.19__cp310-cp310-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (396) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +107 -5
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
  12. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  13. sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
  14. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  15. sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
  16. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  17. sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
  18. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  19. sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
  20. sequenzo/multidomain/cat.py +0 -53
  21. sequenzo/multidomain/idcd.py +0 -1
  22. sequenzo/openmp_setup.py +233 -0
  23. sequenzo/visualization/plot_transition_matrix.py +21 -22
  24. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
  25. sequenzo-0.1.19.dist-info/RECORD +272 -0
  26. sequenzo/dissimilarity_measures/setup.py +0 -35
  27. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  169. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  170. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  171. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  172. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  173. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  174. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  175. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  176. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  177. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  178. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  179. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  180. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  181. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  182. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  183. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  184. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  185. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  186. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  187. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  188. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  189. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  190. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  191. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  192. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  197. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  198. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  199. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  200. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  201. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  202. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  203. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  206. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  207. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  208. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  209. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  210. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  211. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  212. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  213. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
  214. sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
  215. sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
  216. sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
  217. sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
  218. sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
  219. sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
  220. sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
  221. sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
  222. sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
  223. sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  393. sequenzo-0.1.18.dist-info/RECORD +0 -638
  394. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  395. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  396. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,537 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2013 Christian Seiler <christian@iwakd.de>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11META_H
11
- #define EIGEN_CXX11META_H
12
-
13
- #include <vector>
14
- #include "EmulateArray.h"
15
-
16
- #include "CXX11Workarounds.h"
17
-
18
- namespace Eigen {
19
-
20
- namespace internal {
21
-
22
- /** \internal
23
- * \file CXX11/util/CXX11Meta.h
24
- * This file contains generic metaprogramming classes which are not specifically related to Eigen.
25
- * This file expands upon Core/util/Meta.h and adds support for C++11 specific features.
26
- */
27
-
28
- template<typename... tt>
29
- struct type_list { constexpr static int count = sizeof...(tt); };
30
-
31
- template<typename t, typename... tt>
32
- struct type_list<t, tt...> { constexpr static int count = sizeof...(tt) + 1; typedef t first_type; };
33
-
34
- template<typename T, T... nn>
35
- struct numeric_list { constexpr static std::size_t count = sizeof...(nn); };
36
-
37
- template<typename T, T n, T... nn>
38
- struct numeric_list<T, n, nn...> { static const std::size_t count = sizeof...(nn) + 1; const static T first_value = n; };
39
-
40
- #ifndef EIGEN_PARSED_BY_DOXYGEN
41
- /* numeric list constructors
42
- *
43
- * equivalencies:
44
- * constructor result
45
- * typename gen_numeric_list<int, 5>::type numeric_list<int, 0,1,2,3,4>
46
- * typename gen_numeric_list_reversed<int, 5>::type numeric_list<int, 4,3,2,1,0>
47
- * typename gen_numeric_list_swapped_pair<int, 5,1,2>::type numeric_list<int, 0,2,1,3,4>
48
- * typename gen_numeric_list_repeated<int, 0, 5>::type numeric_list<int, 0,0,0,0,0>
49
- */
50
-
51
- template<typename T, std::size_t n, T start = 0, T... ii> struct gen_numeric_list : gen_numeric_list<T, n-1, start, start + n-1, ii...> {};
52
- template<typename T, T start, T... ii> struct gen_numeric_list<T, 0, start, ii...> { typedef numeric_list<T, ii...> type; };
53
-
54
- template<typename T, std::size_t n, T start = 0, T... ii> struct gen_numeric_list_reversed : gen_numeric_list_reversed<T, n-1, start, ii..., start + n-1> {};
55
- template<typename T, T start, T... ii> struct gen_numeric_list_reversed<T, 0, start, ii...> { typedef numeric_list<T, ii...> type; };
56
-
57
- template<typename T, std::size_t n, T a, T b, T start = 0, T... ii> struct gen_numeric_list_swapped_pair : gen_numeric_list_swapped_pair<T, n-1, a, b, start, (start + n-1) == a ? b : ((start + n-1) == b ? a : (start + n-1)), ii...> {};
58
- template<typename T, T a, T b, T start, T... ii> struct gen_numeric_list_swapped_pair<T, 0, a, b, start, ii...> { typedef numeric_list<T, ii...> type; };
59
-
60
- template<typename T, std::size_t n, T V, T... nn> struct gen_numeric_list_repeated : gen_numeric_list_repeated<T, n-1, V, V, nn...> {};
61
- template<typename T, T V, T... nn> struct gen_numeric_list_repeated<T, 0, V, nn...> { typedef numeric_list<T, nn...> type; };
62
-
63
- /* list manipulation: concatenate */
64
-
65
- template<class a, class b> struct concat;
66
-
67
- template<typename... as, typename... bs> struct concat<type_list<as...>, type_list<bs...>> { typedef type_list<as..., bs...> type; };
68
- template<typename T, T... as, T... bs> struct concat<numeric_list<T, as...>, numeric_list<T, bs...> > { typedef numeric_list<T, as..., bs...> type; };
69
-
70
- template<typename... p> struct mconcat;
71
- template<typename a> struct mconcat<a> { typedef a type; };
72
- template<typename a, typename b> struct mconcat<a, b> : concat<a, b> {};
73
- template<typename a, typename b, typename... cs> struct mconcat<a, b, cs...> : concat<a, typename mconcat<b, cs...>::type> {};
74
-
75
- /* list manipulation: extract slices */
76
-
77
- template<int n, typename x> struct take;
78
- template<int n, typename a, typename... as> struct take<n, type_list<a, as...>> : concat<type_list<a>, typename take<n-1, type_list<as...>>::type> {};
79
- template<int n> struct take<n, type_list<>> { typedef type_list<> type; };
80
- template<typename a, typename... as> struct take<0, type_list<a, as...>> { typedef type_list<> type; };
81
- template<> struct take<0, type_list<>> { typedef type_list<> type; };
82
-
83
- template<typename T, int n, T a, T... as> struct take<n, numeric_list<T, a, as...>> : concat<numeric_list<T, a>, typename take<n-1, numeric_list<T, as...>>::type> {};
84
- template<typename T, int n> struct take<n, numeric_list<T>> { typedef numeric_list<T> type; };
85
- template<typename T, T a, T... as> struct take<0, numeric_list<T, a, as...>> { typedef numeric_list<T> type; };
86
- template<typename T> struct take<0, numeric_list<T>> { typedef numeric_list<T> type; };
87
-
88
- template<typename T, int n, T... ii> struct h_skip_helper_numeric;
89
- template<typename T, int n, T i, T... ii> struct h_skip_helper_numeric<T, n, i, ii...> : h_skip_helper_numeric<T, n-1, ii...> {};
90
- template<typename T, T i, T... ii> struct h_skip_helper_numeric<T, 0, i, ii...> { typedef numeric_list<T, i, ii...> type; };
91
- template<typename T, int n> struct h_skip_helper_numeric<T, n> { typedef numeric_list<T> type; };
92
- template<typename T> struct h_skip_helper_numeric<T, 0> { typedef numeric_list<T> type; };
93
-
94
- template<int n, typename... tt> struct h_skip_helper_type;
95
- template<int n, typename t, typename... tt> struct h_skip_helper_type<n, t, tt...> : h_skip_helper_type<n-1, tt...> {};
96
- template<typename t, typename... tt> struct h_skip_helper_type<0, t, tt...> { typedef type_list<t, tt...> type; };
97
- template<int n> struct h_skip_helper_type<n> { typedef type_list<> type; };
98
- template<> struct h_skip_helper_type<0> { typedef type_list<> type; };
99
- #endif //not EIGEN_PARSED_BY_DOXYGEN
100
-
101
- template<int n>
102
- struct h_skip {
103
- template<typename T, T... ii>
104
- constexpr static EIGEN_STRONG_INLINE typename h_skip_helper_numeric<T, n, ii...>::type helper(numeric_list<T, ii...>) { return typename h_skip_helper_numeric<T, n, ii...>::type(); }
105
- template<typename... tt>
106
- constexpr static EIGEN_STRONG_INLINE typename h_skip_helper_type<n, tt...>::type helper(type_list<tt...>) { return typename h_skip_helper_type<n, tt...>::type(); }
107
- };
108
-
109
- template<int n, typename a> struct skip { typedef decltype(h_skip<n>::helper(a())) type; };
110
-
111
- template<int start, int count, typename a> struct slice : take<count, typename skip<start, a>::type> {};
112
-
113
- /* list manipulation: retrieve single element from list */
114
-
115
- template<int n, typename x> struct get;
116
-
117
- template<int n, typename a, typename... as> struct get<n, type_list<a, as...>> : get<n-1, type_list<as...>> {};
118
- template<typename a, typename... as> struct get<0, type_list<a, as...>> { typedef a type; };
119
-
120
- template<typename T, int n, T a, T... as> struct get<n, numeric_list<T, a, as...>> : get<n-1, numeric_list<T, as...>> {};
121
- template<typename T, T a, T... as> struct get<0, numeric_list<T, a, as...>> { constexpr static T value = a; };
122
-
123
- template<std::size_t n, typename T, T a, T... as> constexpr T array_get(const numeric_list<T, a, as...>&) {
124
- return get<(int)n, numeric_list<T, a, as...>>::value;
125
- }
126
-
127
- /* always get type, regardless of dummy; good for parameter pack expansion */
128
-
129
- template<typename T, T dummy, typename t> struct id_numeric { typedef t type; };
130
- template<typename dummy, typename t> struct id_type { typedef t type; };
131
-
132
- /* equality checking, flagged version */
133
-
134
- template<typename a, typename b> struct is_same_gf : is_same<a, b> { constexpr static int global_flags = 0; };
135
-
136
- /* apply_op to list */
137
-
138
- template<
139
- bool from_left, // false
140
- template<typename, typename> class op,
141
- typename additional_param,
142
- typename... values
143
- >
144
- struct h_apply_op_helper { typedef type_list<typename op<values, additional_param>::type...> type; };
145
- template<
146
- template<typename, typename> class op,
147
- typename additional_param,
148
- typename... values
149
- >
150
- struct h_apply_op_helper<true, op, additional_param, values...> { typedef type_list<typename op<additional_param, values>::type...> type; };
151
-
152
- template<
153
- bool from_left,
154
- template<typename, typename> class op,
155
- typename additional_param
156
- >
157
- struct h_apply_op
158
- {
159
- template<typename... values>
160
- constexpr static typename h_apply_op_helper<from_left, op, additional_param, values...>::type helper(type_list<values...>)
161
- { return typename h_apply_op_helper<from_left, op, additional_param, values...>::type(); }
162
- };
163
-
164
- template<
165
- template<typename, typename> class op,
166
- typename additional_param,
167
- typename a
168
- >
169
- struct apply_op_from_left { typedef decltype(h_apply_op<true, op, additional_param>::helper(a())) type; };
170
-
171
- template<
172
- template<typename, typename> class op,
173
- typename additional_param,
174
- typename a
175
- >
176
- struct apply_op_from_right { typedef decltype(h_apply_op<false, op, additional_param>::helper(a())) type; };
177
-
178
- /* see if an element is in a list */
179
-
180
- template<
181
- template<typename, typename> class test,
182
- typename check_against,
183
- typename h_list,
184
- bool last_check_positive = false
185
- >
186
- struct contained_in_list;
187
-
188
- template<
189
- template<typename, typename> class test,
190
- typename check_against,
191
- typename h_list
192
- >
193
- struct contained_in_list<test, check_against, h_list, true>
194
- {
195
- constexpr static bool value = true;
196
- };
197
-
198
- template<
199
- template<typename, typename> class test,
200
- typename check_against,
201
- typename a,
202
- typename... as
203
- >
204
- struct contained_in_list<test, check_against, type_list<a, as...>, false> : contained_in_list<test, check_against, type_list<as...>, test<check_against, a>::value> {};
205
-
206
- template<
207
- template<typename, typename> class test,
208
- typename check_against
209
- EIGEN_TPL_PP_SPEC_HACK_DEFC(typename, empty)
210
- >
211
- struct contained_in_list<test, check_against, type_list<EIGEN_TPL_PP_SPEC_HACK_USE(empty)>, false> { constexpr static bool value = false; };
212
-
213
- /* see if an element is in a list and check for global flags */
214
-
215
- template<
216
- template<typename, typename> class test,
217
- typename check_against,
218
- typename h_list,
219
- int default_flags = 0,
220
- bool last_check_positive = false,
221
- int last_check_flags = default_flags
222
- >
223
- struct contained_in_list_gf;
224
-
225
- template<
226
- template<typename, typename> class test,
227
- typename check_against,
228
- typename h_list,
229
- int default_flags,
230
- int last_check_flags
231
- >
232
- struct contained_in_list_gf<test, check_against, h_list, default_flags, true, last_check_flags>
233
- {
234
- constexpr static bool value = true;
235
- constexpr static int global_flags = last_check_flags;
236
- };
237
-
238
- template<
239
- template<typename, typename> class test,
240
- typename check_against,
241
- typename a,
242
- typename... as,
243
- int default_flags,
244
- int last_check_flags
245
- >
246
- struct contained_in_list_gf<test, check_against, type_list<a, as...>, default_flags, false, last_check_flags> : contained_in_list_gf<test, check_against, type_list<as...>, default_flags, test<check_against, a>::value, test<check_against, a>::global_flags> {};
247
-
248
- template<
249
- template<typename, typename> class test,
250
- typename check_against
251
- EIGEN_TPL_PP_SPEC_HACK_DEFC(typename, empty),
252
- int default_flags,
253
- int last_check_flags
254
- >
255
- struct contained_in_list_gf<test, check_against, type_list<EIGEN_TPL_PP_SPEC_HACK_USE(empty)>, default_flags, false, last_check_flags> { constexpr static bool value = false; constexpr static int global_flags = default_flags; };
256
-
257
- /* generic reductions */
258
-
259
- template<
260
- typename Reducer,
261
- typename... Ts
262
- > struct reduce;
263
-
264
- template<
265
- typename Reducer
266
- > struct reduce<Reducer>
267
- {
268
- EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE int run() { return Reducer::Identity; }
269
- };
270
-
271
- template<
272
- typename Reducer,
273
- typename A
274
- > struct reduce<Reducer, A>
275
- {
276
- EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE A run(A a) { return a; }
277
- };
278
-
279
- template<
280
- typename Reducer,
281
- typename A,
282
- typename... Ts
283
- > struct reduce<Reducer, A, Ts...>
284
- {
285
- EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE auto run(A a, Ts... ts) -> decltype(Reducer::run(a, reduce<Reducer, Ts...>::run(ts...))) {
286
- return Reducer::run(a, reduce<Reducer, Ts...>::run(ts...));
287
- }
288
- };
289
-
290
- /* generic binary operations */
291
-
292
- struct sum_op {
293
- template<typename A, typename B> EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a + b) { return a + b; }
294
- static constexpr int Identity = 0;
295
- };
296
- struct product_op {
297
- template<typename A, typename B> EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a * b) { return a * b; }
298
- static constexpr int Identity = 1;
299
- };
300
-
301
- struct logical_and_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a && b) { return a && b; } };
302
- struct logical_or_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a || b) { return a || b; } };
303
-
304
- struct equal_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a == b) { return a == b; } };
305
- struct not_equal_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a != b) { return a != b; } };
306
- struct lesser_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a < b) { return a < b; } };
307
- struct lesser_equal_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a <= b) { return a <= b; } };
308
- struct greater_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a > b) { return a > b; } };
309
- struct greater_equal_op { template<typename A, typename B> constexpr static EIGEN_STRONG_INLINE auto run(A a, B b) -> decltype(a >= b) { return a >= b; } };
310
-
311
- /* generic unary operations */
312
-
313
- struct not_op { template<typename A> constexpr static EIGEN_STRONG_INLINE auto run(A a) -> decltype(!a) { return !a; } };
314
- struct negation_op { template<typename A> constexpr static EIGEN_STRONG_INLINE auto run(A a) -> decltype(-a) { return -a; } };
315
- struct greater_equal_zero_op { template<typename A> constexpr static EIGEN_STRONG_INLINE auto run(A a) -> decltype(a >= 0) { return a >= 0; } };
316
-
317
-
318
- /* reductions for lists */
319
-
320
- // using auto -> return value spec makes ICC 13.0 and 13.1 crash here, so we have to hack it
321
- // together in front... (13.0 doesn't work with array_prod/array_reduce/... anyway, but 13.1
322
- // does...
323
- template<typename... Ts>
324
- EIGEN_DEVICE_FUNC constexpr EIGEN_STRONG_INLINE decltype(reduce<product_op, Ts...>::run((*((Ts*)0))...)) arg_prod(Ts... ts)
325
- {
326
- return reduce<product_op, Ts...>::run(ts...);
327
- }
328
-
329
- template<typename... Ts>
330
- constexpr EIGEN_STRONG_INLINE decltype(reduce<sum_op, Ts...>::run((*((Ts*)0))...)) arg_sum(Ts... ts)
331
- {
332
- return reduce<sum_op, Ts...>::run(ts...);
333
- }
334
-
335
- /* reverse arrays */
336
-
337
- template<typename Array, int... n>
338
- constexpr EIGEN_STRONG_INLINE Array h_array_reverse(Array arr, numeric_list<int, n...>)
339
- {
340
- return {{array_get<sizeof...(n) - n - 1>(arr)...}};
341
- }
342
-
343
- template<typename T, std::size_t N>
344
- constexpr EIGEN_STRONG_INLINE array<T, N> array_reverse(array<T, N> arr)
345
- {
346
- return h_array_reverse(arr, typename gen_numeric_list<int, N>::type());
347
- }
348
-
349
-
350
- /* generic array reductions */
351
-
352
- // can't reuse standard reduce() interface above because Intel's Compiler
353
- // *really* doesn't like it, so we just reimplement the stuff
354
- // (start from N - 1 and work down to 0 because specialization for
355
- // n == N - 1 also doesn't work in Intel's compiler, so it goes into
356
- // an infinite loop)
357
- template<typename Reducer, typename T, std::size_t N, std::size_t n = N - 1>
358
- struct h_array_reduce {
359
- EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE auto run(array<T, N> arr, T identity) -> decltype(Reducer::run(h_array_reduce<Reducer, T, N, n - 1>::run(arr, identity), array_get<n>(arr)))
360
- {
361
- return Reducer::run(h_array_reduce<Reducer, T, N, n - 1>::run(arr, identity), array_get<n>(arr));
362
- }
363
- };
364
-
365
- template<typename Reducer, typename T, std::size_t N>
366
- struct h_array_reduce<Reducer, T, N, 0>
367
- {
368
- EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE T run(const array<T, N>& arr, T)
369
- {
370
- return array_get<0>(arr);
371
- }
372
- };
373
-
374
- template<typename Reducer, typename T>
375
- struct h_array_reduce<Reducer, T, 0>
376
- {
377
- EIGEN_DEVICE_FUNC constexpr static EIGEN_STRONG_INLINE T run(const array<T, 0>&, T identity)
378
- {
379
- return identity;
380
- }
381
- };
382
-
383
- template<typename Reducer, typename T, std::size_t N>
384
- EIGEN_DEVICE_FUNC constexpr EIGEN_STRONG_INLINE auto array_reduce(const array<T, N>& arr, T identity) -> decltype(h_array_reduce<Reducer, T, N>::run(arr, identity))
385
- {
386
- return h_array_reduce<Reducer, T, N>::run(arr, identity);
387
- }
388
-
389
- /* standard array reductions */
390
-
391
- template<typename T, std::size_t N>
392
- EIGEN_DEVICE_FUNC constexpr EIGEN_STRONG_INLINE auto array_sum(const array<T, N>& arr) -> decltype(array_reduce<sum_op, T, N>(arr, static_cast<T>(0)))
393
- {
394
- return array_reduce<sum_op, T, N>(arr, static_cast<T>(0));
395
- }
396
-
397
- template<typename T, std::size_t N>
398
- EIGEN_DEVICE_FUNC constexpr EIGEN_STRONG_INLINE auto array_prod(const array<T, N>& arr) -> decltype(array_reduce<product_op, T, N>(arr, static_cast<T>(1)))
399
- {
400
- return array_reduce<product_op, T, N>(arr, static_cast<T>(1));
401
- }
402
-
403
- template<typename t>
404
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE t array_prod(const std::vector<t>& a) {
405
- eigen_assert(a.size() > 0);
406
- t prod = 1;
407
- for (size_t i = 0; i < a.size(); ++i) { prod *= a[i]; }
408
- return prod;
409
- }
410
-
411
- /* zip an array */
412
-
413
- template<typename Op, typename A, typename B, std::size_t N, int... n>
414
- constexpr EIGEN_STRONG_INLINE array<decltype(Op::run(A(), B())),N> h_array_zip(array<A, N> a, array<B, N> b, numeric_list<int, n...>)
415
- {
416
- return array<decltype(Op::run(A(), B())),N>{{ Op::run(array_get<n>(a), array_get<n>(b))... }};
417
- }
418
-
419
- template<typename Op, typename A, typename B, std::size_t N>
420
- constexpr EIGEN_STRONG_INLINE array<decltype(Op::run(A(), B())),N> array_zip(array<A, N> a, array<B, N> b)
421
- {
422
- return h_array_zip<Op>(a, b, typename gen_numeric_list<int, N>::type());
423
- }
424
-
425
- /* zip an array and reduce the result */
426
-
427
- template<typename Reducer, typename Op, typename A, typename B, std::size_t N, int... n>
428
- constexpr EIGEN_STRONG_INLINE auto h_array_zip_and_reduce(array<A, N> a, array<B, N> b, numeric_list<int, n...>) -> decltype(reduce<Reducer, typename id_numeric<int,n,decltype(Op::run(A(), B()))>::type...>::run(Op::run(array_get<n>(a), array_get<n>(b))...))
429
- {
430
- return reduce<Reducer, typename id_numeric<int,n,decltype(Op::run(A(), B()))>::type...>::run(Op::run(array_get<n>(a), array_get<n>(b))...);
431
- }
432
-
433
- template<typename Reducer, typename Op, typename A, typename B, std::size_t N>
434
- constexpr EIGEN_STRONG_INLINE auto array_zip_and_reduce(array<A, N> a, array<B, N> b) -> decltype(h_array_zip_and_reduce<Reducer, Op, A, B, N>(a, b, typename gen_numeric_list<int, N>::type()))
435
- {
436
- return h_array_zip_and_reduce<Reducer, Op, A, B, N>(a, b, typename gen_numeric_list<int, N>::type());
437
- }
438
-
439
- /* apply stuff to an array */
440
-
441
- template<typename Op, typename A, std::size_t N, int... n>
442
- constexpr EIGEN_STRONG_INLINE array<decltype(Op::run(A())),N> h_array_apply(array<A, N> a, numeric_list<int, n...>)
443
- {
444
- return array<decltype(Op::run(A())),N>{{ Op::run(array_get<n>(a))... }};
445
- }
446
-
447
- template<typename Op, typename A, std::size_t N>
448
- constexpr EIGEN_STRONG_INLINE array<decltype(Op::run(A())),N> array_apply(array<A, N> a)
449
- {
450
- return h_array_apply<Op>(a, typename gen_numeric_list<int, N>::type());
451
- }
452
-
453
- /* apply stuff to an array and reduce */
454
-
455
- template<typename Reducer, typename Op, typename A, std::size_t N, int... n>
456
- constexpr EIGEN_STRONG_INLINE auto h_array_apply_and_reduce(array<A, N> arr, numeric_list<int, n...>) -> decltype(reduce<Reducer, typename id_numeric<int,n,decltype(Op::run(A()))>::type...>::run(Op::run(array_get<n>(arr))...))
457
- {
458
- return reduce<Reducer, typename id_numeric<int,n,decltype(Op::run(A()))>::type...>::run(Op::run(array_get<n>(arr))...);
459
- }
460
-
461
- template<typename Reducer, typename Op, typename A, std::size_t N>
462
- constexpr EIGEN_STRONG_INLINE auto array_apply_and_reduce(array<A, N> a) -> decltype(h_array_apply_and_reduce<Reducer, Op, A, N>(a, typename gen_numeric_list<int, N>::type()))
463
- {
464
- return h_array_apply_and_reduce<Reducer, Op, A, N>(a, typename gen_numeric_list<int, N>::type());
465
- }
466
-
467
- /* repeat a value n times (and make an array out of it
468
- * usage:
469
- * array<int, 16> = repeat<16>(42);
470
- */
471
-
472
- template<int n>
473
- struct h_repeat
474
- {
475
- template<typename t, int... ii>
476
- constexpr static EIGEN_STRONG_INLINE array<t, n> run(t v, numeric_list<int, ii...>)
477
- {
478
- return {{ typename id_numeric<int, ii, t>::type(v)... }};
479
- }
480
- };
481
-
482
- template<int n, typename t>
483
- constexpr array<t, n> repeat(t v) { return h_repeat<n>::run(v, typename gen_numeric_list<int, n>::type()); }
484
-
485
- /* instantiate a class by a C-style array */
486
- template<class InstType, typename ArrType, std::size_t N, bool Reverse, typename... Ps>
487
- struct h_instantiate_by_c_array;
488
-
489
- template<class InstType, typename ArrType, std::size_t N, typename... Ps>
490
- struct h_instantiate_by_c_array<InstType, ArrType, N, false, Ps...>
491
- {
492
- static InstType run(ArrType* arr, Ps... args)
493
- {
494
- return h_instantiate_by_c_array<InstType, ArrType, N - 1, false, Ps..., ArrType>::run(arr + 1, args..., arr[0]);
495
- }
496
- };
497
-
498
- template<class InstType, typename ArrType, std::size_t N, typename... Ps>
499
- struct h_instantiate_by_c_array<InstType, ArrType, N, true, Ps...>
500
- {
501
- static InstType run(ArrType* arr, Ps... args)
502
- {
503
- return h_instantiate_by_c_array<InstType, ArrType, N - 1, false, ArrType, Ps...>::run(arr + 1, arr[0], args...);
504
- }
505
- };
506
-
507
- template<class InstType, typename ArrType, typename... Ps>
508
- struct h_instantiate_by_c_array<InstType, ArrType, 0, false, Ps...>
509
- {
510
- static InstType run(ArrType* arr, Ps... args)
511
- {
512
- (void)arr;
513
- return InstType(args...);
514
- }
515
- };
516
-
517
- template<class InstType, typename ArrType, typename... Ps>
518
- struct h_instantiate_by_c_array<InstType, ArrType, 0, true, Ps...>
519
- {
520
- static InstType run(ArrType* arr, Ps... args)
521
- {
522
- (void)arr;
523
- return InstType(args...);
524
- }
525
- };
526
-
527
- template<class InstType, typename ArrType, std::size_t N, bool Reverse = false>
528
- InstType instantiate_by_c_array(ArrType* arr)
529
- {
530
- return h_instantiate_by_c_array<InstType, ArrType, N, Reverse>::run(arr);
531
- }
532
-
533
- } // end namespace internal
534
-
535
- } // end namespace Eigen
536
-
537
- #endif // EIGEN_CXX11META_H
@@ -1,88 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2013 Christian Seiler <christian@iwakd.de>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11WORKAROUNDS_H
11
- #define EIGEN_CXX11WORKAROUNDS_H
12
-
13
- /* COMPATIBILITY CHECKS
14
- * (so users of compilers that are too old get some realistic error messages)
15
- */
16
- #if defined(__INTEL_COMPILER) && (__INTEL_COMPILER < 1310)
17
- #error Intel Compiler only supports required C++ features since version 13.1.
18
- // note that most stuff in principle works with 13.0 but when combining
19
- // some features, at some point 13.0 will just fail with an internal assertion
20
- #elif defined(__GNUC__) && !defined(__clang__) && !defined(__INTEL_COMPILER) && (__GNUC__ < 4 || (__GNUC__ == 4 && __GNUC_MINOR__ < 6))
21
- // G++ < 4.6 by default will continue processing the source files - even if we use #error to make
22
- // it error out. For this reason, we use the pragma to make sure G++ aborts at the first error
23
- // it sees. Unfortunately, that is still not our #error directive, but at least the output is
24
- // short enough the user has a chance to see that the compiler version is not sufficient for
25
- // the funky template mojo we use.
26
- #pragma GCC diagnostic error "-Wfatal-errors"
27
- #error GNU C++ Compiler (g++) only supports required C++ features since version 4.6.
28
- #endif
29
-
30
- /* Check that the compiler at least claims to support C++11. It might not be sufficient
31
- * because the compiler may not implement it correctly, but at least we'll know.
32
- * On the other hand, visual studio still doesn't claim to support C++11 although it's
33
- * compliant enugh for our purpose.
34
- */
35
- #if (EIGEN_COMP_CXXVER < 11)
36
- #if defined(__GNUC__) && !defined(__clang__) && !defined(__INTEL_COMPILER)
37
- #pragma GCC diagnostic error "-Wfatal-errors"
38
- #endif
39
- #error This library needs at least a C++11 compliant compiler. If you use g++/clang, please enable the -std=c++11 compiler flag. (-std=c++0x on older versions.)
40
- #endif
41
-
42
- namespace Eigen {
43
-
44
- namespace internal {
45
-
46
- /* std::get is only constexpr in C++14, not yet in C++11
47
- */
48
-
49
-
50
- template<std::size_t I_, class T> constexpr inline T& array_get(std::vector<T>& a) { return a[I_]; }
51
- template<std::size_t I_, class T> constexpr inline T&& array_get(std::vector<T>&& a) { return a[I_]; }
52
- template<std::size_t I_, class T> constexpr inline T const& array_get(std::vector<T> const& a) { return a[I_]; }
53
-
54
- /* Suppose you have a template of the form
55
- * template<typename T> struct X;
56
- * And you want to specialize it in such a way:
57
- * template<typename S1, typename... SN> struct X<Foo<S1, SN...>> { ::: };
58
- * template<> struct X<Foo<>> { ::: };
59
- * This will work in Intel's compiler 13.0, but only to some extent in g++ 4.6, since
60
- * g++ can only match templates called with parameter packs if the number of template
61
- * arguments is not a fixed size (so inside the first specialization, referencing
62
- * X<Foo<Sn...>> will fail in g++). On the other hand, g++ will accept the following:
63
- * template<typename S...> struct X<Foo<S...>> { ::: }:
64
- * as an additional (!) specialization, which will then only match the empty case.
65
- * But Intel's compiler 13.0 won't accept that, it will only accept the empty syntax,
66
- * so we have to create a workaround for this.
67
- */
68
- #if defined(__GNUC__) && !defined(__INTEL_COMPILER)
69
- #define EIGEN_TPL_PP_SPEC_HACK_DEF(mt, n) mt... n
70
- #define EIGEN_TPL_PP_SPEC_HACK_DEFC(mt, n) , EIGEN_TPL_PP_SPEC_HACK_DEF(mt, n)
71
- #define EIGEN_TPL_PP_SPEC_HACK_USE(n) n...
72
- #define EIGEN_TPL_PP_SPEC_HACK_USEC(n) , n...
73
- #else
74
- #define EIGEN_TPL_PP_SPEC_HACK_DEF(mt, n)
75
- #define EIGEN_TPL_PP_SPEC_HACK_DEFC(mt, n)
76
- #define EIGEN_TPL_PP_SPEC_HACK_USE(n)
77
- #define EIGEN_TPL_PP_SPEC_HACK_USEC(n)
78
- #endif
79
-
80
- } // end namespace internal
81
-
82
- } // end namespace Eigen
83
-
84
- #endif // EIGEN_CXX11WORKAROUNDS_H
85
-
86
- /*
87
- * kate: space-indent on; indent-width 2; mixedindent off; indent-mode cstyle;
88
- */