sequenzo 0.1.18__cp310-cp310-win_amd64.whl → 0.1.19__cp310-cp310-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (396) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +107 -5
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
  12. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  13. sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
  14. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  15. sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
  16. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  17. sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
  18. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  19. sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
  20. sequenzo/multidomain/cat.py +0 -53
  21. sequenzo/multidomain/idcd.py +0 -1
  22. sequenzo/openmp_setup.py +233 -0
  23. sequenzo/visualization/plot_transition_matrix.py +21 -22
  24. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
  25. sequenzo-0.1.19.dist-info/RECORD +272 -0
  26. sequenzo/dissimilarity_measures/setup.py +0 -35
  27. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  169. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  170. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  171. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  172. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  173. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  174. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  175. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  176. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  177. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  178. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  179. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  180. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  181. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  182. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  183. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  184. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  185. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  186. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  187. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  188. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  189. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  190. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  191. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  192. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  197. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  198. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  199. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  200. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  201. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  202. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  203. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  206. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  207. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  208. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  209. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  210. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  211. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  212. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  213. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
  214. sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
  215. sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
  216. sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
  217. sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
  218. sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
  219. sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
  220. sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
  221. sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
  222. sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
  223. sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  393. sequenzo-0.1.18.dist-info/RECORD +0 -638
  394. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  395. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  396. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,1102 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorReshaping
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor reshaping class.
19
- *
20
- *
21
- */
22
- namespace internal {
23
- template<typename NewDimensions, typename XprType>
24
- struct traits<TensorReshapingOp<NewDimensions, XprType> > : public traits<XprType>
25
- {
26
- typedef typename XprType::Scalar Scalar;
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = array_size<NewDimensions>::value;
33
- static const int Layout = XprTraits::Layout;
34
- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
37
- template<typename NewDimensions, typename XprType>
38
- struct eval<TensorReshapingOp<NewDimensions, XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorReshapingOp<NewDimensions, XprType>EIGEN_DEVICE_REF type;
41
- };
42
-
43
- template<typename NewDimensions, typename XprType>
44
- struct nested<TensorReshapingOp<NewDimensions, XprType>, 1, typename eval<TensorReshapingOp<NewDimensions, XprType> >::type>
45
- {
46
- typedef TensorReshapingOp<NewDimensions, XprType> type;
47
- };
48
-
49
- } // end namespace internal
50
-
51
-
52
-
53
- template<typename NewDimensions, typename XprType>
54
- class TensorReshapingOp : public TensorBase<TensorReshapingOp<NewDimensions, XprType>, WriteAccessors>
55
- {
56
- public:
57
- typedef TensorBase<TensorReshapingOp<NewDimensions, XprType>, WriteAccessors> Base;
58
- typedef typename Eigen::internal::traits<TensorReshapingOp>::Scalar Scalar;
59
- typedef typename internal::remove_const<typename XprType::CoeffReturnType>::type CoeffReturnType;
60
- typedef typename Eigen::internal::nested<TensorReshapingOp>::type Nested;
61
- typedef typename Eigen::internal::traits<TensorReshapingOp>::StorageKind StorageKind;
62
- typedef typename Eigen::internal::traits<TensorReshapingOp>::Index Index;
63
-
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorReshapingOp(const XprType& expr, const NewDimensions& dims)
65
- : m_xpr(expr), m_dims(dims) {}
66
-
67
- EIGEN_DEVICE_FUNC
68
- const NewDimensions& dimensions() const { return m_dims; }
69
-
70
- EIGEN_DEVICE_FUNC
71
- const typename internal::remove_all<typename XprType::Nested>::type&
72
- expression() const { return m_xpr; }
73
-
74
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorReshapingOp)
75
-
76
- protected:
77
- typename XprType::Nested m_xpr;
78
- const NewDimensions m_dims;
79
- };
80
-
81
-
82
- // Eval as rvalue
83
- template<typename NewDimensions, typename ArgType, typename Device>
84
- struct TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device>
85
- {
86
- typedef TensorReshapingOp<NewDimensions, ArgType> XprType;
87
- typedef NewDimensions Dimensions;
88
-
89
- typedef typename XprType::Index Index;
90
- typedef typename XprType::Scalar Scalar;
91
- typedef typename XprType::CoeffReturnType CoeffReturnType;
92
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
93
- typedef StorageMemory<CoeffReturnType, Device> Storage;
94
- typedef typename Storage::Type EvaluatorPointerType;
95
- typedef StorageMemory<typename internal::remove_const<CoeffReturnType>::type, Device> ConstCastStorage;
96
-
97
- static const int NumOutputDims = internal::array_size<Dimensions>::value;
98
- static const int NumInputDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
99
-
100
- enum ReshapingKind {
101
- // We do not use layout information to determine reshaping kind.
102
- // Depending on the layout `N` can be inner or outer dimension.
103
- OneByN = 0, // expr.reshape(1, N)
104
- NByOne = 1, // expr.reshape(N, 1)
105
- Runtime = 2 // Reshape dimensions are dynamic (specified at runtime).
106
- };
107
-
108
- // clang-format off
109
- static const ReshapingKind kind =
110
- #if defined(EIGEN_HAS_INDEX_LIST)
111
- (NumOutputDims == 2 && internal::index_statically_eq<NewDimensions>(/*index=*/0, /*value=*/1)) ? OneByN
112
- : (NumOutputDims == 2 && internal::index_statically_eq<NewDimensions>(/*index=*/1, /*value=*/1)) ? NByOne
113
- : Runtime;
114
- #else
115
- Runtime;
116
- #endif
117
- // clang-format on
118
-
119
- enum {
120
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
121
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
122
- // For trivial reshapes with raw access to underlying data we will provide
123
- // zero overhead block access.
124
- // TODO(ezhulenev): Consider adding block access without raw access?
125
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess &&
126
- NumInputDims > 0 && NumOutputDims > 0,
127
- PreferBlockAccess = false,
128
- Layout = TensorEvaluator<ArgType, Device>::Layout,
129
- CoordAccess = false, // to be implemented
130
- RawAccess = TensorEvaluator<ArgType, Device>::RawAccess
131
- };
132
-
133
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
134
-
135
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
136
- typedef internal::TensorBlockDescriptor<NumOutputDims, Index> TensorBlockDesc;
137
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
138
-
139
- typedef
140
- typename internal::TensorMaterializedBlock<ScalarNoConst, NumOutputDims,
141
- Layout, Index>
142
- TensorBlock;
143
- //===--------------------------------------------------------------------===//
144
-
145
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
146
- : m_impl(op.expression(), device), m_dimensions(op.dimensions())
147
- {
148
- // The total size of the reshaped tensor must be equal to the total size
149
- // of the input tensor.
150
- eigen_assert(internal::array_prod(m_impl.dimensions()) == internal::array_prod(op.dimensions()));
151
- }
152
-
153
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
154
-
155
- #ifdef EIGEN_USE_THREADS
156
- template <typename EvalSubExprsCallback>
157
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
158
- EvaluatorPointerType data, EvalSubExprsCallback done) {
159
- m_impl.evalSubExprsIfNeededAsync(data, std::move(done));
160
- }
161
- #endif
162
-
163
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
164
- return m_impl.evalSubExprsIfNeeded(data);
165
- }
166
- EIGEN_STRONG_INLINE void cleanup() {
167
- m_impl.cleanup();
168
- }
169
-
170
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
171
- {
172
- return m_impl.coeff(index);
173
- }
174
-
175
- template<int LoadMode>
176
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
177
- {
178
- return m_impl.template packet<LoadMode>(index);
179
- }
180
-
181
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
182
- return m_impl.costPerCoeff(vectorized);
183
- }
184
-
185
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
186
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
187
- return internal::TensorBlockResourceRequirements::any();
188
- }
189
-
190
- // required in block(OutputTensorBlock* output_block) const
191
- // For C++03 compatibility this must be defined outside the method
192
- struct BlockIteratorState {
193
- Index stride;
194
- Index span;
195
- Index size;
196
- Index count;
197
- };
198
-
199
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
200
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
201
- bool /*root_of_expr_ast*/ = false) const {
202
- eigen_assert(m_impl.data() != NULL);
203
- eigen_assert((kind == Runtime) ||
204
- (kind == OneByN && desc.dimensions()[0] == 1) ||
205
- (kind == NByOne && desc.dimensions()[1] == 1));
206
-
207
- if (kind == OneByN || kind == NByOne) {
208
- // We can guarantee at compile time that block is just a contiguous slice
209
- // of the underlying expression memory buffer.
210
- return TensorBlock(internal::TensorBlockKind::kView,
211
- m_impl.data() + desc.offset(), desc.dimensions());
212
- } else {
213
- // This will do additional runtime checks, and in the end it might be also
214
- // a view, or it might be a block materialized in the temporary buffer.
215
- return TensorBlock::materialize(m_impl.data(), m_dimensions, desc,
216
- scratch);
217
- }
218
- }
219
-
220
- EIGEN_DEVICE_FUNC typename Storage::Type data() const {
221
- return constCast(m_impl.data());
222
- }
223
-
224
- EIGEN_DEVICE_FUNC const TensorEvaluator<ArgType, Device>& impl() const { return m_impl; }
225
-
226
- #ifdef EIGEN_USE_SYCL
227
- // binding placeholder accessors to a command group handler for SYCL
228
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
229
- m_impl.bind(cgh);
230
- }
231
- #endif
232
- protected:
233
- TensorEvaluator<ArgType, Device> m_impl;
234
- NewDimensions m_dimensions;
235
- };
236
-
237
-
238
- // Eval as lvalue
239
- template<typename NewDimensions, typename ArgType, typename Device>
240
- struct TensorEvaluator<TensorReshapingOp<NewDimensions, ArgType>, Device>
241
- : public TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device>
242
-
243
- {
244
- typedef TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device> Base;
245
- typedef TensorReshapingOp<NewDimensions, ArgType> XprType;
246
- typedef NewDimensions Dimensions;
247
-
248
- enum {
249
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
250
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
251
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess,
252
- PreferBlockAccess = false,
253
- Layout = TensorEvaluator<ArgType, Device>::Layout,
254
- CoordAccess = false, // to be implemented
255
- RawAccess = TensorEvaluator<ArgType, Device>::RawAccess
256
- };
257
-
258
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
259
- : Base(op, device)
260
- { }
261
-
262
- typedef typename XprType::Index Index;
263
- typedef typename XprType::Scalar Scalar;
264
- typedef typename XprType::CoeffReturnType CoeffReturnType;
265
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
266
-
267
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
268
- typedef internal::TensorBlockDescriptor<TensorEvaluator::NumOutputDims, Index>
269
- TensorBlockDesc;
270
- //===--------------------------------------------------------------------===//
271
-
272
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
273
- {
274
- return this->m_impl.coeffRef(index);
275
- }
276
-
277
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
278
- void writePacket(Index index, const PacketReturnType& x)
279
- {
280
- this->m_impl.template writePacket<StoreMode>(index, x);
281
- }
282
-
283
- template <typename TensorBlock>
284
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
285
- const TensorBlockDesc& desc, const TensorBlock& block) {
286
- assert(this->m_impl.data() != NULL);
287
-
288
- typedef typename TensorBlock::XprType TensorBlockExpr;
289
- typedef internal::TensorBlockAssignment<
290
- Scalar, TensorEvaluator::NumOutputDims, TensorBlockExpr, Index>
291
- TensorBlockAssign;
292
-
293
- TensorBlockAssign::Run(
294
- TensorBlockAssign::target(desc.dimensions(),
295
- internal::strides<Layout>(this->dimensions()),
296
- this->m_impl.data(), desc.offset()),
297
- block.expr());
298
- }
299
- };
300
-
301
-
302
- /** \class TensorSlicing
303
- * \ingroup CXX11_Tensor_Module
304
- *
305
- * \brief Tensor slicing class.
306
- *
307
- *
308
- */
309
- namespace internal {
310
- template<typename StartIndices, typename Sizes, typename XprType>
311
- struct traits<TensorSlicingOp<StartIndices, Sizes, XprType> > : public traits<XprType>
312
- {
313
- typedef typename XprType::Scalar Scalar;
314
- typedef traits<XprType> XprTraits;
315
- typedef typename XprTraits::StorageKind StorageKind;
316
- typedef typename XprTraits::Index Index;
317
- typedef typename XprType::Nested Nested;
318
- typedef typename remove_reference<Nested>::type _Nested;
319
- static const int NumDimensions = array_size<StartIndices>::value;
320
- static const int Layout = XprTraits::Layout;
321
- typedef typename XprTraits::PointerType PointerType;
322
- };
323
-
324
- template<typename StartIndices, typename Sizes, typename XprType>
325
- struct eval<TensorSlicingOp<StartIndices, Sizes, XprType>, Eigen::Dense>
326
- {
327
- typedef const TensorSlicingOp<StartIndices, Sizes, XprType>EIGEN_DEVICE_REF type;
328
- };
329
-
330
- template<typename StartIndices, typename Sizes, typename XprType>
331
- struct nested<TensorSlicingOp<StartIndices, Sizes, XprType>, 1, typename eval<TensorSlicingOp<StartIndices, Sizes, XprType> >::type>
332
- {
333
- typedef TensorSlicingOp<StartIndices, Sizes, XprType> type;
334
- };
335
-
336
- } // end namespace internal
337
-
338
-
339
-
340
- template<typename StartIndices, typename Sizes, typename XprType>
341
- class TensorSlicingOp : public TensorBase<TensorSlicingOp<StartIndices, Sizes, XprType> >
342
- {
343
- public:
344
- typedef TensorBase<TensorSlicingOp<StartIndices, Sizes, XprType> > Base;
345
- typedef typename Eigen::internal::traits<TensorSlicingOp>::Scalar Scalar;
346
- typedef typename XprType::CoeffReturnType CoeffReturnType;
347
- typedef typename Eigen::internal::nested<TensorSlicingOp>::type Nested;
348
- typedef typename Eigen::internal::traits<TensorSlicingOp>::StorageKind StorageKind;
349
- typedef typename Eigen::internal::traits<TensorSlicingOp>::Index Index;
350
-
351
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorSlicingOp(const XprType& expr, const StartIndices& indices, const Sizes& sizes)
352
- : m_xpr(expr), m_indices(indices), m_sizes(sizes) {}
353
-
354
- EIGEN_DEVICE_FUNC
355
- const StartIndices& startIndices() const { return m_indices; }
356
- EIGEN_DEVICE_FUNC
357
- const Sizes& sizes() const { return m_sizes; }
358
-
359
- EIGEN_DEVICE_FUNC
360
- const typename internal::remove_all<typename XprType::Nested>::type&
361
- expression() const { return m_xpr; }
362
-
363
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorSlicingOp)
364
-
365
- protected:
366
- typename XprType::Nested m_xpr;
367
- const StartIndices m_indices;
368
- const Sizes m_sizes;
369
- };
370
-
371
-
372
- // Fixme: figure out the exact threshold
373
- namespace {
374
- template <typename Index, typename Device, bool BlockAccess> struct MemcpyTriggerForSlicing {
375
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const Device& device) : threshold_(2 * device.numThreads()) { }
376
- EIGEN_DEVICE_FUNC bool operator ()(Index total, Index contiguous) const {
377
- const bool prefer_block_evaluation = BlockAccess && total > 32*1024;
378
- return !prefer_block_evaluation && contiguous > threshold_;
379
- }
380
-
381
- private:
382
- Index threshold_;
383
- };
384
-
385
- // It is very expensive to start the memcpy kernel on GPU: we therefore only
386
- // use it for large copies.
387
- #ifdef EIGEN_USE_GPU
388
- template <typename Index, bool BlockAccess> struct MemcpyTriggerForSlicing<Index, GpuDevice, BlockAccess> {
389
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const GpuDevice&) { }
390
- EIGEN_DEVICE_FUNC bool operator ()(Index, Index contiguous) const { return contiguous > 4*1024*1024; }
391
- };
392
- #endif
393
-
394
- // It is very expensive to start the memcpy kernel on GPU: we therefore only
395
- // use it for large copies.
396
- #ifdef EIGEN_USE_SYCL
397
- template <typename Index, bool BlockAccess> struct MemcpyTriggerForSlicing<Index, Eigen::SyclDevice, BlockAccess> {
398
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const SyclDevice&) { }
399
- EIGEN_DEVICE_FUNC bool operator ()(Index, Index contiguous) const { return contiguous > 4*1024*1024; }
400
- };
401
- #endif
402
-
403
- }
404
-
405
- // Eval as rvalue
406
- template<typename StartIndices, typename Sizes, typename ArgType, typename Device>
407
- struct TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
408
- {
409
- typedef TensorSlicingOp<StartIndices, Sizes, ArgType> XprType;
410
- static const int NumDims = internal::array_size<Sizes>::value;
411
-
412
- typedef typename XprType::Index Index;
413
- typedef typename XprType::Scalar Scalar;
414
- typedef typename XprType::CoeffReturnType CoeffReturnType;
415
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
416
- typedef Sizes Dimensions;
417
- typedef StorageMemory<CoeffReturnType, Device> Storage;
418
- typedef StorageMemory<typename internal::remove_const<CoeffReturnType>::type, Device> ConstCastStorage;
419
- typedef typename Storage::Type EvaluatorPointerType;
420
-
421
- enum {
422
- // Alignment can't be guaranteed at compile time since it depends on the
423
- // slice offsets and sizes.
424
- IsAligned = false,
425
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
426
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess &&
427
- // FIXME: Temporary workaround for bug in slicing of bool tensors.
428
- !internal::is_same<typename internal::remove_const<Scalar>::type, bool>::value,
429
- PreferBlockAccess = true,
430
- Layout = TensorEvaluator<ArgType, Device>::Layout,
431
- CoordAccess = false,
432
- RawAccess = false
433
- };
434
-
435
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
436
-
437
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
438
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
439
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
440
-
441
- // Tensor slicing does not change the block type.
442
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
443
- TensorBlock;
444
- //===--------------------------------------------------------------------===//
445
-
446
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
447
- : m_impl(op.expression(), device), m_device(device), m_dimensions(op.sizes()), m_offsets(op.startIndices())
448
- {
449
- m_is_identity = true;
450
- for (int i = 0; i < internal::array_size<Dimensions>::value; ++i) {
451
- eigen_assert(m_impl.dimensions()[i] >=
452
- op.sizes()[i] + op.startIndices()[i]);
453
- if (m_impl.dimensions()[i] != op.sizes()[i] ||
454
- op.startIndices()[i] != 0) {
455
- m_is_identity = false;
456
- }
457
- }
458
-
459
- // No strides for scalars.
460
- if (NumDims == 0) return;
461
-
462
- const typename TensorEvaluator<ArgType, Device>::Dimensions& input_dims = m_impl.dimensions();
463
- const Sizes& output_dims = op.sizes();
464
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
465
- m_inputStrides[0] = 1;
466
- for (int i = 1; i < NumDims; ++i) {
467
- m_inputStrides[i] = m_inputStrides[i-1] * input_dims[i-1];
468
- }
469
-
470
- // Don't initialize m_fastOutputStrides[0] since it won't ever be accessed.
471
- m_outputStrides[0] = 1;
472
- for (int i = 1; i < NumDims; ++i) {
473
- m_outputStrides[i] = m_outputStrides[i-1] * output_dims[i-1];
474
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
475
- }
476
- } else {
477
- m_inputStrides[NumDims-1] = 1;
478
- for (int i = NumDims - 2; i >= 0; --i) {
479
- m_inputStrides[i] = m_inputStrides[i+1] * input_dims[i+1];
480
- }
481
-
482
- // Don't initialize m_fastOutputStrides[NumDims-1] since it won't ever be accessed.
483
- m_outputStrides[NumDims-1] = 1;
484
- for (int i = NumDims - 2; i >= 0; --i) {
485
- m_outputStrides[i] = m_outputStrides[i+1] * output_dims[i+1];
486
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
487
- }
488
- }
489
- }
490
-
491
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
492
-
493
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
494
- m_impl.evalSubExprsIfNeeded(NULL);
495
- if (!NumTraits<typename internal::remove_const<Scalar>::type>::RequireInitialization
496
- && data && m_impl.data()) {
497
- Index contiguous_values = 1;
498
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
499
- for (int i = 0; i < NumDims; ++i) {
500
- contiguous_values *= dimensions()[i];
501
- if (dimensions()[i] != m_impl.dimensions()[i]) {
502
- break;
503
- }
504
- }
505
- } else {
506
- for (int i = NumDims-1; i >= 0; --i) {
507
- contiguous_values *= dimensions()[i];
508
- if (dimensions()[i] != m_impl.dimensions()[i]) {
509
- break;
510
- }
511
- }
512
- }
513
- // Use memcpy if it's going to be faster than using the regular evaluation.
514
- const MemcpyTriggerForSlicing<Index, Device, BlockAccess> trigger(m_device);
515
- if (trigger(internal::array_prod(dimensions()), contiguous_values)) {
516
- EvaluatorPointerType src = (EvaluatorPointerType)m_impl.data();
517
- for (Index i = 0; i < internal::array_prod(dimensions()); i += contiguous_values) {
518
- Index offset = srcCoeff(i);
519
- m_device.memcpy((void*)(m_device.get(data + i)), m_device.get(src+offset), contiguous_values * sizeof(Scalar));
520
- }
521
- return false;
522
- }
523
- }
524
- return true;
525
- }
526
-
527
- #ifdef EIGEN_USE_THREADS
528
- template <typename EvalSubExprsCallback>
529
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
530
- EvaluatorPointerType /*data*/, EvalSubExprsCallback done) {
531
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
532
- }
533
- #endif // EIGEN_USE_THREADS
534
-
535
- EIGEN_STRONG_INLINE void cleanup() {
536
- m_impl.cleanup();
537
- }
538
-
539
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
540
- {
541
- if (m_is_identity) {
542
- return m_impl.coeff(index);
543
- } else {
544
- return m_impl.coeff(srcCoeff(index));
545
- }
546
- }
547
-
548
- template<int LoadMode>
549
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
550
- {
551
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
552
- EIGEN_STATIC_ASSERT((packetSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
553
- eigen_assert(index+packetSize-1 < internal::array_prod(dimensions()));
554
-
555
- if (m_is_identity) {
556
- return m_impl.template packet<LoadMode>(index);
557
- }
558
-
559
- Index inputIndices[] = {0, 0};
560
- Index indices[] = {index, index + packetSize - 1};
561
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
562
- EIGEN_UNROLL_LOOP
563
- for (int i = NumDims - 1; i > 0; --i) {
564
- const Index idx0 = indices[0] / m_fastOutputStrides[i];
565
- const Index idx1 = indices[1] / m_fastOutputStrides[i];
566
- inputIndices[0] += (idx0 + m_offsets[i]) * m_inputStrides[i];
567
- inputIndices[1] += (idx1 + m_offsets[i]) * m_inputStrides[i];
568
- indices[0] -= idx0 * m_outputStrides[i];
569
- indices[1] -= idx1 * m_outputStrides[i];
570
- }
571
- inputIndices[0] += (indices[0] + m_offsets[0]);
572
- inputIndices[1] += (indices[1] + m_offsets[0]);
573
- } else {
574
- EIGEN_UNROLL_LOOP
575
- for (int i = 0; i < NumDims - 1; ++i) {
576
- const Index idx0 = indices[0] / m_fastOutputStrides[i];
577
- const Index idx1 = indices[1] / m_fastOutputStrides[i];
578
- inputIndices[0] += (idx0 + m_offsets[i]) * m_inputStrides[i];
579
- inputIndices[1] += (idx1 + m_offsets[i]) * m_inputStrides[i];
580
- indices[0] -= idx0 * m_outputStrides[i];
581
- indices[1] -= idx1 * m_outputStrides[i];
582
- }
583
- inputIndices[0] += (indices[0] + m_offsets[NumDims-1]);
584
- inputIndices[1] += (indices[1] + m_offsets[NumDims-1]);
585
- }
586
- if (inputIndices[1] - inputIndices[0] == packetSize - 1) {
587
- PacketReturnType rslt = m_impl.template packet<Unaligned>(inputIndices[0]);
588
- return rslt;
589
- }
590
- else {
591
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[packetSize];
592
- values[0] = m_impl.coeff(inputIndices[0]);
593
- values[packetSize-1] = m_impl.coeff(inputIndices[1]);
594
- EIGEN_UNROLL_LOOP
595
- for (int i = 1; i < packetSize-1; ++i) {
596
- values[i] = coeff(index+i);
597
- }
598
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
599
- return rslt;
600
- }
601
- }
602
-
603
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
604
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, m_is_identity ? 1 : NumDims);
605
- }
606
-
607
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
608
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
609
- const size_t target_size = m_device.lastLevelCacheSize();
610
- return internal::TensorBlockResourceRequirements::merge(
611
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size),
612
- m_impl.getResourceRequirements());
613
- }
614
-
615
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
616
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
617
- bool /*root_of_expr_ast*/ = false) const {
618
- TensorBlockDesc arg_desc = desc.WithOffset(srcCoeff(desc.offset()));
619
- TensorBlock block = m_impl.block(arg_desc, scratch);
620
- if (!arg_desc.HasDestinationBuffer()) desc.DropDestinationBuffer();
621
- return block;
622
- }
623
-
624
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
625
- typename Storage::Type result = constCast(m_impl.data());
626
- if (result) {
627
- Index offset = 0;
628
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
629
- for (int i = 0; i < NumDims; ++i) {
630
- if (m_dimensions[i] != m_impl.dimensions()[i]) {
631
- offset += m_offsets[i] * m_inputStrides[i];
632
- for (int j = i+1; j < NumDims; ++j) {
633
- if (m_dimensions[j] > 1) {
634
- return NULL;
635
- }
636
- offset += m_offsets[j] * m_inputStrides[j];
637
- }
638
- break;
639
- }
640
- }
641
- } else {
642
- for (int i = NumDims - 1; i >= 0; --i) {
643
- if (m_dimensions[i] != m_impl.dimensions()[i]) {
644
- offset += m_offsets[i] * m_inputStrides[i];
645
- for (int j = i-1; j >= 0; --j) {
646
- if (m_dimensions[j] > 1) {
647
- return NULL;
648
- }
649
- offset += m_offsets[j] * m_inputStrides[j];
650
- }
651
- break;
652
- }
653
- }
654
- }
655
- return result + offset;
656
- }
657
- return NULL;
658
- }
659
- #ifdef EIGEN_USE_SYCL
660
- // binding placeholder accessors to a command group handler for SYCL
661
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
662
- m_impl.bind(cgh);
663
- }
664
- #endif
665
-
666
- protected:
667
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
668
- {
669
- Index inputIndex = 0;
670
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
671
- EIGEN_UNROLL_LOOP
672
- for (int i = NumDims - 1; i > 0; --i) {
673
- const Index idx = index / m_fastOutputStrides[i];
674
- inputIndex += (idx + m_offsets[i]) * m_inputStrides[i];
675
- index -= idx * m_outputStrides[i];
676
- }
677
- inputIndex += (index + m_offsets[0]);
678
- } else {
679
- EIGEN_UNROLL_LOOP
680
- for (int i = 0; i < NumDims - 1; ++i) {
681
- const Index idx = index / m_fastOutputStrides[i];
682
- inputIndex += (idx + m_offsets[i]) * m_inputStrides[i];
683
- index -= idx * m_outputStrides[i];
684
- }
685
- inputIndex += (index + m_offsets[NumDims-1]);
686
- }
687
- return inputIndex;
688
- }
689
-
690
- array<Index, NumDims> m_outputStrides;
691
- array<internal::TensorIntDivisor<Index>, NumDims> m_fastOutputStrides;
692
- array<Index, NumDims> m_inputStrides;
693
- TensorEvaluator<ArgType, Device> m_impl;
694
- const Device EIGEN_DEVICE_REF m_device;
695
- Dimensions m_dimensions;
696
- bool m_is_identity;
697
- const StartIndices m_offsets;
698
- };
699
-
700
-
701
- // Eval as lvalue
702
- template<typename StartIndices, typename Sizes, typename ArgType, typename Device>
703
- struct TensorEvaluator<TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
704
- : public TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
705
- {
706
- typedef TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device> Base;
707
- typedef TensorSlicingOp<StartIndices, Sizes, ArgType> XprType;
708
- static const int NumDims = internal::array_size<Sizes>::value;
709
-
710
- typedef typename XprType::Index Index;
711
- typedef typename XprType::Scalar Scalar;
712
- typedef typename XprType::CoeffReturnType CoeffReturnType;
713
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
714
- typedef Sizes Dimensions;
715
-
716
- enum {
717
- IsAligned = false,
718
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
719
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
720
- PreferBlockAccess = true,
721
- Layout = TensorEvaluator<ArgType, Device>::Layout,
722
- CoordAccess = false,
723
- RawAccess = (NumDims == 1) & TensorEvaluator<ArgType, Device>::RawAccess
724
- };
725
-
726
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
727
-
728
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
729
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
730
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
731
- //===--------------------------------------------------------------------===//
732
-
733
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
734
- : Base(op, device)
735
- { }
736
-
737
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
738
- {
739
- if (this->m_is_identity) {
740
- return this->m_impl.coeffRef(index);
741
- } else {
742
- return this->m_impl.coeffRef(this->srcCoeff(index));
743
- }
744
- }
745
-
746
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
747
- void writePacket(Index index, const PacketReturnType& x)
748
- {
749
- if (this->m_is_identity) {
750
- this->m_impl.template writePacket<StoreMode>(index, x);
751
- return;
752
- }
753
-
754
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
755
- Index inputIndices[] = {0, 0};
756
- Index indices[] = {index, index + packetSize - 1};
757
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
758
- EIGEN_UNROLL_LOOP
759
- for (int i = NumDims - 1; i > 0; --i) {
760
- const Index idx0 = indices[0] / this->m_fastOutputStrides[i];
761
- const Index idx1 = indices[1] / this->m_fastOutputStrides[i];
762
- inputIndices[0] += (idx0 + this->m_offsets[i]) * this->m_inputStrides[i];
763
- inputIndices[1] += (idx1 + this->m_offsets[i]) * this->m_inputStrides[i];
764
- indices[0] -= idx0 * this->m_outputStrides[i];
765
- indices[1] -= idx1 * this->m_outputStrides[i];
766
- }
767
- inputIndices[0] += (indices[0] + this->m_offsets[0]);
768
- inputIndices[1] += (indices[1] + this->m_offsets[0]);
769
- } else {
770
- EIGEN_UNROLL_LOOP
771
- for (int i = 0; i < NumDims - 1; ++i) {
772
- const Index idx0 = indices[0] / this->m_fastOutputStrides[i];
773
- const Index idx1 = indices[1] / this->m_fastOutputStrides[i];
774
- inputIndices[0] += (idx0 + this->m_offsets[i]) * this->m_inputStrides[i];
775
- inputIndices[1] += (idx1 + this->m_offsets[i]) * this->m_inputStrides[i];
776
- indices[0] -= idx0 * this->m_outputStrides[i];
777
- indices[1] -= idx1 * this->m_outputStrides[i];
778
- }
779
- inputIndices[0] += (indices[0] + this->m_offsets[NumDims-1]);
780
- inputIndices[1] += (indices[1] + this->m_offsets[NumDims-1]);
781
- }
782
- if (inputIndices[1] - inputIndices[0] == packetSize - 1) {
783
- this->m_impl.template writePacket<StoreMode>(inputIndices[0], x);
784
- }
785
- else {
786
- EIGEN_ALIGN_MAX CoeffReturnType values[packetSize];
787
- internal::pstore<CoeffReturnType, PacketReturnType>(values, x);
788
- this->m_impl.coeffRef(inputIndices[0]) = values[0];
789
- this->m_impl.coeffRef(inputIndices[1]) = values[packetSize-1];
790
- EIGEN_UNROLL_LOOP
791
- for (int i = 1; i < packetSize-1; ++i) {
792
- this->coeffRef(index+i) = values[i];
793
- }
794
- }
795
- }
796
-
797
- template<typename TensorBlock>
798
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
799
- const TensorBlockDesc& desc, const TensorBlock& block) {
800
- TensorBlockDesc arg_desc = desc.WithOffset(this->srcCoeff(desc.offset()));
801
- this->m_impl.writeBlock(arg_desc, block);
802
- }
803
- };
804
-
805
- namespace internal {
806
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
807
- struct traits<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> > : public traits<XprType>
808
- {
809
- typedef typename XprType::Scalar Scalar;
810
- typedef traits<XprType> XprTraits;
811
- typedef typename XprTraits::StorageKind StorageKind;
812
- typedef typename XprTraits::Index Index;
813
- typedef typename XprType::Nested Nested;
814
- typedef typename remove_reference<Nested>::type _Nested;
815
- static const int NumDimensions = array_size<StartIndices>::value;
816
- static const int Layout = XprTraits::Layout;
817
- typedef typename XprTraits::PointerType PointerType;
818
- };
819
-
820
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
821
- struct eval<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>, Eigen::Dense>
822
- {
823
- typedef const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>EIGEN_DEVICE_REF type;
824
- };
825
-
826
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
827
- struct nested<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>, 1, typename eval<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> >::type>
828
- {
829
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> type;
830
- };
831
-
832
- } // end namespace internal
833
-
834
-
835
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
836
- class TensorStridingSlicingOp : public TensorBase<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> >
837
- {
838
- public:
839
- typedef TensorBase<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> > Base;
840
- typedef typename internal::traits<TensorStridingSlicingOp>::Scalar Scalar;
841
- typedef typename XprType::CoeffReturnType CoeffReturnType;
842
- typedef typename internal::nested<TensorStridingSlicingOp>::type Nested;
843
- typedef typename internal::traits<TensorStridingSlicingOp>::StorageKind StorageKind;
844
- typedef typename internal::traits<TensorStridingSlicingOp>::Index Index;
845
-
846
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorStridingSlicingOp(
847
- const XprType& expr, const StartIndices& startIndices,
848
- const StopIndices& stopIndices, const Strides& strides)
849
- : m_xpr(expr), m_startIndices(startIndices), m_stopIndices(stopIndices),
850
- m_strides(strides) {}
851
-
852
- EIGEN_DEVICE_FUNC
853
- const StartIndices& startIndices() const { return m_startIndices; }
854
- EIGEN_DEVICE_FUNC
855
- const StartIndices& stopIndices() const { return m_stopIndices; }
856
- EIGEN_DEVICE_FUNC
857
- const StartIndices& strides() const { return m_strides; }
858
-
859
- EIGEN_DEVICE_FUNC
860
- const typename internal::remove_all<typename XprType::Nested>::type&
861
- expression() const { return m_xpr; }
862
-
863
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorStridingSlicingOp)
864
-
865
- protected:
866
- typename XprType::Nested m_xpr;
867
- const StartIndices m_startIndices;
868
- const StopIndices m_stopIndices;
869
- const Strides m_strides;
870
- };
871
-
872
- // Eval as rvalue
873
- template<typename StartIndices, typename StopIndices, typename Strides, typename ArgType, typename Device>
874
- struct TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
875
- {
876
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType> XprType;
877
- static const int NumDims = internal::array_size<Strides>::value;
878
- typedef typename XprType::Index Index;
879
- typedef typename XprType::Scalar Scalar;
880
- typedef typename XprType::CoeffReturnType CoeffReturnType;
881
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
882
- typedef StorageMemory<CoeffReturnType, Device> Storage;
883
- typedef typename Storage::Type EvaluatorPointerType;
884
- typedef Strides Dimensions;
885
-
886
- enum {
887
- // Alignment can't be guaranteed at compile time since it depends on the
888
- // slice offsets and sizes.
889
- IsAligned = false,
890
- PacketAccess = false,
891
- BlockAccess = false,
892
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
893
- Layout = TensorEvaluator<ArgType, Device>::Layout,
894
- RawAccess = false
895
- };
896
-
897
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
898
- typedef internal::TensorBlockNotImplemented TensorBlock;
899
- //===--------------------------------------------------------------------===//
900
-
901
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
902
- : m_impl(op.expression(), device),
903
- m_device(device),
904
- m_strides(op.strides())
905
- {
906
- // Handle degenerate intervals by gracefully clamping and allowing m_dimensions to be zero
907
- DSizes<Index, NumDims> startIndicesClamped, stopIndicesClamped;
908
- for (ptrdiff_t i = 0; i < internal::array_size<Dimensions>::value; ++i) {
909
- eigen_assert(m_strides[i] != 0 && "0 stride is invalid");
910
- if (m_strides[i] > 0) {
911
- startIndicesClamped[i] =
912
- clamp(op.startIndices()[i], 0, m_impl.dimensions()[i]);
913
- stopIndicesClamped[i] =
914
- clamp(op.stopIndices()[i], 0, m_impl.dimensions()[i]);
915
- } else {
916
- /* implies m_strides[i] < 0 by assert */
917
- startIndicesClamped[i] =
918
- clamp(op.startIndices()[i], -1, m_impl.dimensions()[i] - 1);
919
- stopIndicesClamped[i] =
920
- clamp(op.stopIndices()[i], -1, m_impl.dimensions()[i] - 1);
921
- }
922
- m_startIndices[i] = startIndicesClamped[i];
923
- }
924
-
925
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions InputDimensions;
926
- const InputDimensions& input_dims = m_impl.dimensions();
927
-
928
- // compute output tensor shape
929
- m_is_identity = true;
930
- for (int i = 0; i < NumDims; i++) {
931
- Index interval = stopIndicesClamped[i] - startIndicesClamped[i];
932
- if (interval == 0 || ((interval < 0) != (m_strides[i] < 0))) {
933
- m_dimensions[i] = 0;
934
- } else {
935
- m_dimensions[i] =
936
- (interval / m_strides[i]) + (interval % m_strides[i] != 0 ? 1 : 0);
937
- eigen_assert(m_dimensions[i] >= 0);
938
- }
939
- if (m_strides[i] != 1 || interval != m_impl.dimensions()[i]) {
940
- m_is_identity = false;
941
- }
942
- }
943
-
944
- Strides output_dims = m_dimensions;
945
-
946
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
947
- m_inputStrides[0] = m_strides[0];
948
- m_offsets[0] = startIndicesClamped[0];
949
- Index previousDimProduct = 1;
950
- for (int i = 1; i < NumDims; ++i) {
951
- previousDimProduct *= input_dims[i-1];
952
- m_inputStrides[i] = previousDimProduct * m_strides[i];
953
- m_offsets[i] = startIndicesClamped[i] * previousDimProduct;
954
- }
955
-
956
- // Don't initialize m_fastOutputStrides[0] since it won't ever be accessed.
957
- m_outputStrides[0] = 1;
958
- for (int i = 1; i < NumDims; ++i) {
959
- m_outputStrides[i] = m_outputStrides[i-1] * output_dims[i-1];
960
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
961
- }
962
- } else {
963
- m_inputStrides[NumDims-1] = m_strides[NumDims-1];
964
- m_offsets[NumDims-1] = startIndicesClamped[NumDims-1];
965
- Index previousDimProduct = 1;
966
- for (int i = NumDims - 2; i >= 0; --i) {
967
- previousDimProduct *= input_dims[i+1];
968
- m_inputStrides[i] = previousDimProduct * m_strides[i];
969
- m_offsets[i] = startIndicesClamped[i] * previousDimProduct;
970
- }
971
-
972
- m_outputStrides[NumDims-1] = 1;
973
- for (int i = NumDims - 2; i >= 0; --i) {
974
- m_outputStrides[i] = m_outputStrides[i+1] * output_dims[i+1];
975
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
976
- }
977
- }
978
- }
979
-
980
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
981
-
982
-
983
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
984
- m_impl.evalSubExprsIfNeeded(NULL);
985
- return true;
986
- }
987
-
988
- EIGEN_STRONG_INLINE void cleanup() {
989
- m_impl.cleanup();
990
- }
991
-
992
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
993
- {
994
- if (m_is_identity) {
995
- return m_impl.coeff(index);
996
- } else {
997
- return m_impl.coeff(srcCoeff(index));
998
- }
999
- }
1000
-
1001
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
1002
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, m_is_identity ? 1 : NumDims);
1003
- }
1004
-
1005
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
1006
- return NULL;
1007
- }
1008
- #ifdef EIGEN_USE_SYCL
1009
- // binding placeholder accessors to a command group handler for SYCL
1010
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
1011
- m_impl.bind(cgh);
1012
- }
1013
- #endif
1014
- protected:
1015
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
1016
- {
1017
- Index inputIndex = 0;
1018
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
1019
- EIGEN_UNROLL_LOOP
1020
- for (int i = NumDims - 1; i >= 0; --i) {
1021
- const Index idx = index / m_fastOutputStrides[i];
1022
- inputIndex += idx * m_inputStrides[i] + m_offsets[i];
1023
- index -= idx * m_outputStrides[i];
1024
- }
1025
- } else {
1026
- EIGEN_UNROLL_LOOP
1027
- for (int i = 0; i < NumDims; ++i) {
1028
- const Index idx = index / m_fastOutputStrides[i];
1029
- inputIndex += idx * m_inputStrides[i] + m_offsets[i];
1030
- index -= idx * m_outputStrides[i];
1031
- }
1032
- }
1033
- return inputIndex;
1034
- }
1035
-
1036
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index clamp(Index value, Index min, Index max) {
1037
- #ifndef SYCL_DEVICE_ONLY
1038
- return numext::maxi(min, numext::mini(max,value));
1039
- #else
1040
- return cl::sycl::clamp(value, min, max);
1041
- #endif
1042
- }
1043
-
1044
- array<Index, NumDims> m_outputStrides;
1045
- array<internal::TensorIntDivisor<Index>, NumDims> m_fastOutputStrides;
1046
- array<Index, NumDims> m_inputStrides;
1047
- bool m_is_identity;
1048
- TensorEvaluator<ArgType, Device> m_impl;
1049
- const Device EIGEN_DEVICE_REF m_device;
1050
- DSizes<Index, NumDims> m_startIndices; // clamped startIndices
1051
- DSizes<Index, NumDims> m_dimensions;
1052
- DSizes<Index, NumDims> m_offsets; // offset in a flattened shape
1053
- const Strides m_strides;
1054
- };
1055
-
1056
- // Eval as lvalue
1057
- template<typename StartIndices, typename StopIndices, typename Strides, typename ArgType, typename Device>
1058
- struct TensorEvaluator<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
1059
- : public TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
1060
- {
1061
- typedef TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device> Base;
1062
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType> XprType;
1063
- static const int NumDims = internal::array_size<Strides>::value;
1064
-
1065
- enum {
1066
- IsAligned = false,
1067
- PacketAccess = false,
1068
- BlockAccess = false,
1069
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
1070
- Layout = TensorEvaluator<ArgType, Device>::Layout,
1071
- CoordAccess = TensorEvaluator<ArgType, Device>::CoordAccess,
1072
- RawAccess = false
1073
- };
1074
-
1075
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
1076
- typedef internal::TensorBlockNotImplemented TensorBlock;
1077
- //===--------------------------------------------------------------------===//
1078
-
1079
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
1080
- : Base(op, device)
1081
- { }
1082
-
1083
- typedef typename XprType::Index Index;
1084
- typedef typename XprType::Scalar Scalar;
1085
- typedef typename XprType::CoeffReturnType CoeffReturnType;
1086
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
1087
- typedef Strides Dimensions;
1088
-
1089
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
1090
- {
1091
- if (this->m_is_identity) {
1092
- return this->m_impl.coeffRef(index);
1093
- } else {
1094
- return this->m_impl.coeffRef(this->srcCoeff(index));
1095
- }
1096
- }
1097
- };
1098
-
1099
-
1100
- } // end namespace Eigen
1101
-
1102
- #endif // EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H