sequenzo 0.1.18__cp310-cp310-win_amd64.whl → 0.1.19__cp310-cp310-win_amd64.whl
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- sequenzo/__init__.py +39 -7
- sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
- sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
- sequenzo/clustering/KMedoids.py +39 -0
- sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
- sequenzo/clustering/hierarchical_clustering.py +107 -5
- sequenzo/define_sequence_data.py +10 -1
- sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
- sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
- sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
- sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
- sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
- sequenzo/multidomain/cat.py +0 -53
- sequenzo/multidomain/idcd.py +0 -1
- sequenzo/openmp_setup.py +233 -0
- sequenzo/visualization/plot_transition_matrix.py +21 -22
- {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
- sequenzo-0.1.19.dist-info/RECORD +272 -0
- sequenzo/dissimilarity_measures/setup.py +0 -35
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
- sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
- sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
- sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
- sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
- sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
- sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
- sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
- sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
- sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
- sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
- sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
- sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
- sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
- sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
- sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
- sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
- sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
- sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
- sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
- sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
- sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
- sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
- sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
- sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
- sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
- sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
- sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
- sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
- sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
- sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
- sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
- sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
- sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
- sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
- sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
- sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
- sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
- sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
- sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
- sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
- sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
- sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
- sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
- sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
- sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
- sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
- sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
- sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
- sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
- sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
- sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
- sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
- sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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(general_matrix_vector_product_wrapper<int,Scalar,RowMajor,false,false>::run),
|
|
35
|
-
// array index: ADJ
|
|
36
|
-
(general_matrix_vector_product_wrapper<int,Scalar,RowMajor,Conj ,false>::run),
|
|
37
|
-
0
|
|
38
|
-
};
|
|
39
|
-
|
|
40
|
-
const Scalar* a = reinterpret_cast<const Scalar*>(pa);
|
|
41
|
-
const Scalar* b = reinterpret_cast<const Scalar*>(pb);
|
|
42
|
-
Scalar* c = reinterpret_cast<Scalar*>(pc);
|
|
43
|
-
Scalar alpha = *reinterpret_cast<const Scalar*>(palpha);
|
|
44
|
-
Scalar beta = *reinterpret_cast<const Scalar*>(pbeta);
|
|
45
|
-
|
|
46
|
-
// check arguments
|
|
47
|
-
int info = 0;
|
|
48
|
-
if(OP(*opa)==INVALID) info = 1;
|
|
49
|
-
else if(*m<0) info = 2;
|
|
50
|
-
else if(*n<0) info = 3;
|
|
51
|
-
else if(*lda<std::max(1,*m)) info = 6;
|
|
52
|
-
else if(*incb==0) info = 8;
|
|
53
|
-
else if(*incc==0) info = 11;
|
|
54
|
-
if(info)
|
|
55
|
-
return xerbla_(SCALAR_SUFFIX_UP"GEMV ",&info,6);
|
|
56
|
-
|
|
57
|
-
if(*m==0 || *n==0 || (alpha==Scalar(0) && beta==Scalar(1)))
|
|
58
|
-
return 0;
|
|
59
|
-
|
|
60
|
-
int actual_m = *m;
|
|
61
|
-
int actual_n = *n;
|
|
62
|
-
int code = OP(*opa);
|
|
63
|
-
if(code!=NOTR)
|
|
64
|
-
std::swap(actual_m,actual_n);
|
|
65
|
-
|
|
66
|
-
const Scalar* actual_b = get_compact_vector(b,actual_n,*incb);
|
|
67
|
-
Scalar* actual_c = get_compact_vector(c,actual_m,*incc);
|
|
68
|
-
|
|
69
|
-
if(beta!=Scalar(1))
|
|
70
|
-
{
|
|
71
|
-
if(beta==Scalar(0)) make_vector(actual_c, actual_m).setZero();
|
|
72
|
-
else make_vector(actual_c, actual_m) *= beta;
|
|
73
|
-
}
|
|
74
|
-
|
|
75
|
-
if(code>=4 || func[code]==0)
|
|
76
|
-
return 0;
|
|
77
|
-
|
|
78
|
-
func[code](actual_m, actual_n, a, *lda, actual_b, 1, actual_c, 1, alpha);
|
|
79
|
-
|
|
80
|
-
if(actual_b!=b) delete[] actual_b;
|
|
81
|
-
if(actual_c!=c) delete[] copy_back(actual_c,c,actual_m,*incc);
|
|
82
|
-
|
|
83
|
-
return 1;
|
|
84
|
-
}
|
|
85
|
-
|
|
86
|
-
int EIGEN_BLAS_FUNC(trsv)(const char *uplo, const char *opa, const char *diag, const int *n, const RealScalar *pa, const int *lda, RealScalar *pb, const int *incb)
|
|
87
|
-
{
|
|
88
|
-
typedef void (*functype)(int, const Scalar *, int, Scalar *);
|
|
89
|
-
static const functype func[16] = {
|
|
90
|
-
// array index: NOTR | (UP << 2) | (NUNIT << 3)
|
|
91
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,ColMajor>::run),
|
|
92
|
-
// array index: TR | (UP << 2) | (NUNIT << 3)
|
|
93
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,RowMajor>::run),
|
|
94
|
-
// array index: ADJ | (UP << 2) | (NUNIT << 3)
|
|
95
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, Conj, RowMajor>::run),
|
|
96
|
-
0,
|
|
97
|
-
// array index: NOTR | (LO << 2) | (NUNIT << 3)
|
|
98
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,ColMajor>::run),
|
|
99
|
-
// array index: TR | (LO << 2) | (NUNIT << 3)
|
|
100
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,RowMajor>::run),
|
|
101
|
-
// array index: ADJ | (LO << 2) | (NUNIT << 3)
|
|
102
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, Conj, RowMajor>::run),
|
|
103
|
-
0,
|
|
104
|
-
// array index: NOTR | (UP << 2) | (UNIT << 3)
|
|
105
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,ColMajor>::run),
|
|
106
|
-
// array index: TR | (UP << 2) | (UNIT << 3)
|
|
107
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,RowMajor>::run),
|
|
108
|
-
// array index: ADJ | (UP << 2) | (UNIT << 3)
|
|
109
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,Conj, RowMajor>::run),
|
|
110
|
-
0,
|
|
111
|
-
// array index: NOTR | (LO << 2) | (UNIT << 3)
|
|
112
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,ColMajor>::run),
|
|
113
|
-
// array index: TR | (LO << 2) | (UNIT << 3)
|
|
114
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,RowMajor>::run),
|
|
115
|
-
// array index: ADJ | (LO << 2) | (UNIT << 3)
|
|
116
|
-
(internal::triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,Conj, RowMajor>::run),
|
|
117
|
-
0
|
|
118
|
-
};
|
|
119
|
-
|
|
120
|
-
const Scalar* a = reinterpret_cast<const Scalar*>(pa);
|
|
121
|
-
Scalar* b = reinterpret_cast<Scalar*>(pb);
|
|
122
|
-
|
|
123
|
-
int info = 0;
|
|
124
|
-
if(UPLO(*uplo)==INVALID) info = 1;
|
|
125
|
-
else if(OP(*opa)==INVALID) info = 2;
|
|
126
|
-
else if(DIAG(*diag)==INVALID) info = 3;
|
|
127
|
-
else if(*n<0) info = 4;
|
|
128
|
-
else if(*lda<std::max(1,*n)) info = 6;
|
|
129
|
-
else if(*incb==0) info = 8;
|
|
130
|
-
if(info)
|
|
131
|
-
return xerbla_(SCALAR_SUFFIX_UP"TRSV ",&info,6);
|
|
132
|
-
|
|
133
|
-
Scalar* actual_b = get_compact_vector(b,*n,*incb);
|
|
134
|
-
|
|
135
|
-
int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
|
|
136
|
-
func[code](*n, a, *lda, actual_b);
|
|
137
|
-
|
|
138
|
-
if(actual_b!=b) delete[] copy_back(actual_b,b,*n,*incb);
|
|
139
|
-
|
|
140
|
-
return 0;
|
|
141
|
-
}
|
|
142
|
-
|
|
143
|
-
|
|
144
|
-
|
|
145
|
-
int EIGEN_BLAS_FUNC(trmv)(const char *uplo, const char *opa, const char *diag, const int *n, const RealScalar *pa, const int *lda, RealScalar *pb, const int *incb)
|
|
146
|
-
{
|
|
147
|
-
typedef void (*functype)(int, int, const Scalar *, int, const Scalar *, int, Scalar *, int, const Scalar&);
|
|
148
|
-
static const functype func[16] = {
|
|
149
|
-
// array index: NOTR | (UP << 2) | (NUNIT << 3)
|
|
150
|
-
(internal::triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,ColMajor>::run),
|
|
151
|
-
// array index: TR | (UP << 2) | (NUNIT << 3)
|
|
152
|
-
(internal::triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,RowMajor>::run),
|
|
153
|
-
// array index: ADJ | (UP << 2) | (NUNIT << 3)
|
|
154
|
-
(internal::triangular_matrix_vector_product<int,Lower|0, Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
155
|
-
0,
|
|
156
|
-
// array index: NOTR | (LO << 2) | (NUNIT << 3)
|
|
157
|
-
(internal::triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,ColMajor>::run),
|
|
158
|
-
// array index: TR | (LO << 2) | (NUNIT << 3)
|
|
159
|
-
(internal::triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,RowMajor>::run),
|
|
160
|
-
// array index: ADJ | (LO << 2) | (NUNIT << 3)
|
|
161
|
-
(internal::triangular_matrix_vector_product<int,Upper|0, Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
162
|
-
0,
|
|
163
|
-
// array index: NOTR | (UP << 2) | (UNIT << 3)
|
|
164
|
-
(internal::triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
|
|
165
|
-
// array index: TR | (UP << 2) | (UNIT << 3)
|
|
166
|
-
(internal::triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
|
|
167
|
-
// array index: ADJ | (UP << 2) | (UNIT << 3)
|
|
168
|
-
(internal::triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
169
|
-
0,
|
|
170
|
-
// array index: NOTR | (LO << 2) | (UNIT << 3)
|
|
171
|
-
(internal::triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
|
|
172
|
-
// array index: TR | (LO << 2) | (UNIT << 3)
|
|
173
|
-
(internal::triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
|
|
174
|
-
// array index: ADJ | (LO << 2) | (UNIT << 3)
|
|
175
|
-
(internal::triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
176
|
-
0
|
|
177
|
-
};
|
|
178
|
-
|
|
179
|
-
const Scalar* a = reinterpret_cast<const Scalar*>(pa);
|
|
180
|
-
Scalar* b = reinterpret_cast<Scalar*>(pb);
|
|
181
|
-
|
|
182
|
-
int info = 0;
|
|
183
|
-
if(UPLO(*uplo)==INVALID) info = 1;
|
|
184
|
-
else if(OP(*opa)==INVALID) info = 2;
|
|
185
|
-
else if(DIAG(*diag)==INVALID) info = 3;
|
|
186
|
-
else if(*n<0) info = 4;
|
|
187
|
-
else if(*lda<std::max(1,*n)) info = 6;
|
|
188
|
-
else if(*incb==0) info = 8;
|
|
189
|
-
if(info)
|
|
190
|
-
return xerbla_(SCALAR_SUFFIX_UP"TRMV ",&info,6);
|
|
191
|
-
|
|
192
|
-
if(*n==0)
|
|
193
|
-
return 1;
|
|
194
|
-
|
|
195
|
-
Scalar* actual_b = get_compact_vector(b,*n,*incb);
|
|
196
|
-
Matrix<Scalar,Dynamic,1> res(*n);
|
|
197
|
-
res.setZero();
|
|
198
|
-
|
|
199
|
-
int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
|
|
200
|
-
if(code>=16 || func[code]==0)
|
|
201
|
-
return 0;
|
|
202
|
-
|
|
203
|
-
func[code](*n, *n, a, *lda, actual_b, 1, res.data(), 1, Scalar(1));
|
|
204
|
-
|
|
205
|
-
copy_back(res.data(),b,*n,*incb);
|
|
206
|
-
if(actual_b!=b) delete[] actual_b;
|
|
207
|
-
|
|
208
|
-
return 1;
|
|
209
|
-
}
|
|
210
|
-
|
|
211
|
-
/** GBMV performs one of the matrix-vector operations
|
|
212
|
-
*
|
|
213
|
-
* y := alpha*A*x + beta*y, or y := alpha*A'*x + beta*y,
|
|
214
|
-
*
|
|
215
|
-
* where alpha and beta are scalars, x and y are vectors and A is an
|
|
216
|
-
* m by n band matrix, with kl sub-diagonals and ku super-diagonals.
|
|
217
|
-
*/
|
|
218
|
-
int EIGEN_BLAS_FUNC(gbmv)(char *trans, int *m, int *n, int *kl, int *ku, RealScalar *palpha, RealScalar *pa, int *lda,
|
|
219
|
-
RealScalar *px, int *incx, RealScalar *pbeta, RealScalar *py, int *incy)
|
|
220
|
-
{
|
|
221
|
-
const Scalar* a = reinterpret_cast<const Scalar*>(pa);
|
|
222
|
-
const Scalar* x = reinterpret_cast<const Scalar*>(px);
|
|
223
|
-
Scalar* y = reinterpret_cast<Scalar*>(py);
|
|
224
|
-
Scalar alpha = *reinterpret_cast<const Scalar*>(palpha);
|
|
225
|
-
Scalar beta = *reinterpret_cast<const Scalar*>(pbeta);
|
|
226
|
-
int coeff_rows = *kl+*ku+1;
|
|
227
|
-
|
|
228
|
-
int info = 0;
|
|
229
|
-
if(OP(*trans)==INVALID) info = 1;
|
|
230
|
-
else if(*m<0) info = 2;
|
|
231
|
-
else if(*n<0) info = 3;
|
|
232
|
-
else if(*kl<0) info = 4;
|
|
233
|
-
else if(*ku<0) info = 5;
|
|
234
|
-
else if(*lda<coeff_rows) info = 8;
|
|
235
|
-
else if(*incx==0) info = 10;
|
|
236
|
-
else if(*incy==0) info = 13;
|
|
237
|
-
if(info)
|
|
238
|
-
return xerbla_(SCALAR_SUFFIX_UP"GBMV ",&info,6);
|
|
239
|
-
|
|
240
|
-
if(*m==0 || *n==0 || (alpha==Scalar(0) && beta==Scalar(1)))
|
|
241
|
-
return 0;
|
|
242
|
-
|
|
243
|
-
int actual_m = *m;
|
|
244
|
-
int actual_n = *n;
|
|
245
|
-
if(OP(*trans)!=NOTR)
|
|
246
|
-
std::swap(actual_m,actual_n);
|
|
247
|
-
|
|
248
|
-
const Scalar* actual_x = get_compact_vector(x,actual_n,*incx);
|
|
249
|
-
Scalar* actual_y = get_compact_vector(y,actual_m,*incy);
|
|
250
|
-
|
|
251
|
-
if(beta!=Scalar(1))
|
|
252
|
-
{
|
|
253
|
-
if(beta==Scalar(0)) make_vector(actual_y, actual_m).setZero();
|
|
254
|
-
else make_vector(actual_y, actual_m) *= beta;
|
|
255
|
-
}
|
|
256
|
-
|
|
257
|
-
ConstMatrixType mat_coeffs(a,coeff_rows,*n,*lda);
|
|
258
|
-
|
|
259
|
-
int nb = std::min(*n,(*m)+(*ku));
|
|
260
|
-
for(int j=0; j<nb; ++j)
|
|
261
|
-
{
|
|
262
|
-
int start = std::max(0,j - *ku);
|
|
263
|
-
int end = std::min((*m)-1,j + *kl);
|
|
264
|
-
int len = end - start + 1;
|
|
265
|
-
int offset = (*ku) - j + start;
|
|
266
|
-
if(OP(*trans)==NOTR)
|
|
267
|
-
make_vector(actual_y+start,len) += (alpha*actual_x[j]) * mat_coeffs.col(j).segment(offset,len);
|
|
268
|
-
else if(OP(*trans)==TR)
|
|
269
|
-
actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).transpose() * make_vector(actual_x+start,len) ).value();
|
|
270
|
-
else
|
|
271
|
-
actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).adjoint() * make_vector(actual_x+start,len) ).value();
|
|
272
|
-
}
|
|
273
|
-
|
|
274
|
-
if(actual_x!=x) delete[] actual_x;
|
|
275
|
-
if(actual_y!=y) delete[] copy_back(actual_y,y,actual_m,*incy);
|
|
276
|
-
|
|
277
|
-
return 0;
|
|
278
|
-
}
|
|
279
|
-
|
|
280
|
-
#if 0
|
|
281
|
-
/** TBMV performs one of the matrix-vector operations
|
|
282
|
-
*
|
|
283
|
-
* x := A*x, or x := A'*x,
|
|
284
|
-
*
|
|
285
|
-
* where x is an n element vector and A is an n by n unit, or non-unit,
|
|
286
|
-
* upper or lower triangular band matrix, with ( k + 1 ) diagonals.
|
|
287
|
-
*/
|
|
288
|
-
int EIGEN_BLAS_FUNC(tbmv)(char *uplo, char *opa, char *diag, int *n, int *k, RealScalar *pa, int *lda, RealScalar *px, int *incx)
|
|
289
|
-
{
|
|
290
|
-
Scalar* a = reinterpret_cast<Scalar*>(pa);
|
|
291
|
-
Scalar* x = reinterpret_cast<Scalar*>(px);
|
|
292
|
-
int coeff_rows = *k + 1;
|
|
293
|
-
|
|
294
|
-
int info = 0;
|
|
295
|
-
if(UPLO(*uplo)==INVALID) info = 1;
|
|
296
|
-
else if(OP(*opa)==INVALID) info = 2;
|
|
297
|
-
else if(DIAG(*diag)==INVALID) info = 3;
|
|
298
|
-
else if(*n<0) info = 4;
|
|
299
|
-
else if(*k<0) info = 5;
|
|
300
|
-
else if(*lda<coeff_rows) info = 7;
|
|
301
|
-
else if(*incx==0) info = 9;
|
|
302
|
-
if(info)
|
|
303
|
-
return xerbla_(SCALAR_SUFFIX_UP"TBMV ",&info,6);
|
|
304
|
-
|
|
305
|
-
if(*n==0)
|
|
306
|
-
return 0;
|
|
307
|
-
|
|
308
|
-
int actual_n = *n;
|
|
309
|
-
|
|
310
|
-
Scalar* actual_x = get_compact_vector(x,actual_n,*incx);
|
|
311
|
-
|
|
312
|
-
MatrixType mat_coeffs(a,coeff_rows,*n,*lda);
|
|
313
|
-
|
|
314
|
-
int ku = UPLO(*uplo)==UPPER ? *k : 0;
|
|
315
|
-
int kl = UPLO(*uplo)==LOWER ? *k : 0;
|
|
316
|
-
|
|
317
|
-
for(int j=0; j<*n; ++j)
|
|
318
|
-
{
|
|
319
|
-
int start = std::max(0,j - ku);
|
|
320
|
-
int end = std::min((*m)-1,j + kl);
|
|
321
|
-
int len = end - start + 1;
|
|
322
|
-
int offset = (ku) - j + start;
|
|
323
|
-
|
|
324
|
-
if(OP(*trans)==NOTR)
|
|
325
|
-
make_vector(actual_y+start,len) += (alpha*actual_x[j]) * mat_coeffs.col(j).segment(offset,len);
|
|
326
|
-
else if(OP(*trans)==TR)
|
|
327
|
-
actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).transpose() * make_vector(actual_x+start,len) ).value();
|
|
328
|
-
else
|
|
329
|
-
actual_y[j] += alpha * ( mat_coeffs.col(j).segment(offset,len).adjoint() * make_vector(actual_x+start,len) ).value();
|
|
330
|
-
}
|
|
331
|
-
|
|
332
|
-
if(actual_x!=x) delete[] actual_x;
|
|
333
|
-
if(actual_y!=y) delete[] copy_back(actual_y,y,actual_m,*incy);
|
|
334
|
-
|
|
335
|
-
return 0;
|
|
336
|
-
}
|
|
337
|
-
#endif
|
|
338
|
-
|
|
339
|
-
/** DTBSV solves one of the systems of equations
|
|
340
|
-
*
|
|
341
|
-
* A*x = b, or A'*x = b,
|
|
342
|
-
*
|
|
343
|
-
* where b and x are n element vectors and A is an n by n unit, or
|
|
344
|
-
* non-unit, upper or lower triangular band matrix, with ( k + 1 )
|
|
345
|
-
* diagonals.
|
|
346
|
-
*
|
|
347
|
-
* No test for singularity or near-singularity is included in this
|
|
348
|
-
* routine. Such tests must be performed before calling this routine.
|
|
349
|
-
*/
|
|
350
|
-
int EIGEN_BLAS_FUNC(tbsv)(char *uplo, char *op, char *diag, int *n, int *k, RealScalar *pa, int *lda, RealScalar *px, int *incx)
|
|
351
|
-
{
|
|
352
|
-
typedef void (*functype)(int, int, const Scalar *, int, Scalar *);
|
|
353
|
-
static const functype func[16] = {
|
|
354
|
-
// array index: NOTR | (UP << 2) | (NUNIT << 3)
|
|
355
|
-
(internal::band_solve_triangular_selector<int,Upper|0, Scalar,false,Scalar,ColMajor>::run),
|
|
356
|
-
// array index: TR | (UP << 2) | (NUNIT << 3)
|
|
357
|
-
(internal::band_solve_triangular_selector<int,Lower|0, Scalar,false,Scalar,RowMajor>::run),
|
|
358
|
-
// array index: ADJ | (UP << 2) | (NUNIT << 3)
|
|
359
|
-
(internal::band_solve_triangular_selector<int,Lower|0, Scalar,Conj, Scalar,RowMajor>::run),
|
|
360
|
-
0,
|
|
361
|
-
// array index: NOTR | (LO << 2) | (NUNIT << 3)
|
|
362
|
-
(internal::band_solve_triangular_selector<int,Lower|0, Scalar,false,Scalar,ColMajor>::run),
|
|
363
|
-
// array index: TR | (LO << 2) | (NUNIT << 3)
|
|
364
|
-
(internal::band_solve_triangular_selector<int,Upper|0, Scalar,false,Scalar,RowMajor>::run),
|
|
365
|
-
// array index: ADJ | (LO << 2) | (NUNIT << 3)
|
|
366
|
-
(internal::band_solve_triangular_selector<int,Upper|0, Scalar,Conj, Scalar,RowMajor>::run),
|
|
367
|
-
0,
|
|
368
|
-
// array index: NOTR | (UP << 2) | (UNIT << 3)
|
|
369
|
-
(internal::band_solve_triangular_selector<int,Upper|UnitDiag,Scalar,false,Scalar,ColMajor>::run),
|
|
370
|
-
// array index: TR | (UP << 2) | (UNIT << 3)
|
|
371
|
-
(internal::band_solve_triangular_selector<int,Lower|UnitDiag,Scalar,false,Scalar,RowMajor>::run),
|
|
372
|
-
// array index: ADJ | (UP << 2) | (UNIT << 3)
|
|
373
|
-
(internal::band_solve_triangular_selector<int,Lower|UnitDiag,Scalar,Conj, Scalar,RowMajor>::run),
|
|
374
|
-
0,
|
|
375
|
-
// array index: NOTR | (LO << 2) | (UNIT << 3)
|
|
376
|
-
(internal::band_solve_triangular_selector<int,Lower|UnitDiag,Scalar,false,Scalar,ColMajor>::run),
|
|
377
|
-
// array index: TR | (LO << 2) | (UNIT << 3)
|
|
378
|
-
(internal::band_solve_triangular_selector<int,Upper|UnitDiag,Scalar,false,Scalar,RowMajor>::run),
|
|
379
|
-
// array index: ADJ | (LO << 2) | (UNIT << 3)
|
|
380
|
-
(internal::band_solve_triangular_selector<int,Upper|UnitDiag,Scalar,Conj, Scalar,RowMajor>::run),
|
|
381
|
-
0,
|
|
382
|
-
};
|
|
383
|
-
|
|
384
|
-
Scalar* a = reinterpret_cast<Scalar*>(pa);
|
|
385
|
-
Scalar* x = reinterpret_cast<Scalar*>(px);
|
|
386
|
-
int coeff_rows = *k+1;
|
|
387
|
-
|
|
388
|
-
int info = 0;
|
|
389
|
-
if(UPLO(*uplo)==INVALID) info = 1;
|
|
390
|
-
else if(OP(*op)==INVALID) info = 2;
|
|
391
|
-
else if(DIAG(*diag)==INVALID) info = 3;
|
|
392
|
-
else if(*n<0) info = 4;
|
|
393
|
-
else if(*k<0) info = 5;
|
|
394
|
-
else if(*lda<coeff_rows) info = 7;
|
|
395
|
-
else if(*incx==0) info = 9;
|
|
396
|
-
if(info)
|
|
397
|
-
return xerbla_(SCALAR_SUFFIX_UP"TBSV ",&info,6);
|
|
398
|
-
|
|
399
|
-
if(*n==0 || (*k==0 && DIAG(*diag)==UNIT))
|
|
400
|
-
return 0;
|
|
401
|
-
|
|
402
|
-
int actual_n = *n;
|
|
403
|
-
|
|
404
|
-
Scalar* actual_x = get_compact_vector(x,actual_n,*incx);
|
|
405
|
-
|
|
406
|
-
int code = OP(*op) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
|
|
407
|
-
if(code>=16 || func[code]==0)
|
|
408
|
-
return 0;
|
|
409
|
-
|
|
410
|
-
func[code](*n, *k, a, *lda, actual_x);
|
|
411
|
-
|
|
412
|
-
if(actual_x!=x) delete[] copy_back(actual_x,x,actual_n,*incx);
|
|
413
|
-
|
|
414
|
-
return 0;
|
|
415
|
-
}
|
|
416
|
-
|
|
417
|
-
/** DTPMV performs one of the matrix-vector operations
|
|
418
|
-
*
|
|
419
|
-
* x := A*x, or x := A'*x,
|
|
420
|
-
*
|
|
421
|
-
* where x is an n element vector and A is an n by n unit, or non-unit,
|
|
422
|
-
* upper or lower triangular matrix, supplied in packed form.
|
|
423
|
-
*/
|
|
424
|
-
int EIGEN_BLAS_FUNC(tpmv)(char *uplo, char *opa, char *diag, int *n, RealScalar *pap, RealScalar *px, int *incx)
|
|
425
|
-
{
|
|
426
|
-
typedef void (*functype)(int, const Scalar*, const Scalar*, Scalar*, Scalar);
|
|
427
|
-
static const functype func[16] = {
|
|
428
|
-
// array index: NOTR | (UP << 2) | (NUNIT << 3)
|
|
429
|
-
(internal::packed_triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,ColMajor>::run),
|
|
430
|
-
// array index: TR | (UP << 2) | (NUNIT << 3)
|
|
431
|
-
(internal::packed_triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,RowMajor>::run),
|
|
432
|
-
// array index: ADJ | (UP << 2) | (NUNIT << 3)
|
|
433
|
-
(internal::packed_triangular_matrix_vector_product<int,Lower|0, Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
434
|
-
0,
|
|
435
|
-
// array index: NOTR | (LO << 2) | (NUNIT << 3)
|
|
436
|
-
(internal::packed_triangular_matrix_vector_product<int,Lower|0, Scalar,false,Scalar,false,ColMajor>::run),
|
|
437
|
-
// array index: TR | (LO << 2) | (NUNIT << 3)
|
|
438
|
-
(internal::packed_triangular_matrix_vector_product<int,Upper|0, Scalar,false,Scalar,false,RowMajor>::run),
|
|
439
|
-
// array index: ADJ | (LO << 2) | (NUNIT << 3)
|
|
440
|
-
(internal::packed_triangular_matrix_vector_product<int,Upper|0, Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
441
|
-
0,
|
|
442
|
-
// array index: NOTR | (UP << 2) | (UNIT << 3)
|
|
443
|
-
(internal::packed_triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
|
|
444
|
-
// array index: TR | (UP << 2) | (UNIT << 3)
|
|
445
|
-
(internal::packed_triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
|
|
446
|
-
// array index: ADJ | (UP << 2) | (UNIT << 3)
|
|
447
|
-
(internal::packed_triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
448
|
-
0,
|
|
449
|
-
// array index: NOTR | (LO << 2) | (UNIT << 3)
|
|
450
|
-
(internal::packed_triangular_matrix_vector_product<int,Lower|UnitDiag,Scalar,false,Scalar,false,ColMajor>::run),
|
|
451
|
-
// array index: TR | (LO << 2) | (UNIT << 3)
|
|
452
|
-
(internal::packed_triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,false,Scalar,false,RowMajor>::run),
|
|
453
|
-
// array index: ADJ | (LO << 2) | (UNIT << 3)
|
|
454
|
-
(internal::packed_triangular_matrix_vector_product<int,Upper|UnitDiag,Scalar,Conj, Scalar,false,RowMajor>::run),
|
|
455
|
-
0
|
|
456
|
-
};
|
|
457
|
-
|
|
458
|
-
Scalar* ap = reinterpret_cast<Scalar*>(pap);
|
|
459
|
-
Scalar* x = reinterpret_cast<Scalar*>(px);
|
|
460
|
-
|
|
461
|
-
int info = 0;
|
|
462
|
-
if(UPLO(*uplo)==INVALID) info = 1;
|
|
463
|
-
else if(OP(*opa)==INVALID) info = 2;
|
|
464
|
-
else if(DIAG(*diag)==INVALID) info = 3;
|
|
465
|
-
else if(*n<0) info = 4;
|
|
466
|
-
else if(*incx==0) info = 7;
|
|
467
|
-
if(info)
|
|
468
|
-
return xerbla_(SCALAR_SUFFIX_UP"TPMV ",&info,6);
|
|
469
|
-
|
|
470
|
-
if(*n==0)
|
|
471
|
-
return 1;
|
|
472
|
-
|
|
473
|
-
Scalar* actual_x = get_compact_vector(x,*n,*incx);
|
|
474
|
-
Matrix<Scalar,Dynamic,1> res(*n);
|
|
475
|
-
res.setZero();
|
|
476
|
-
|
|
477
|
-
int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
|
|
478
|
-
if(code>=16 || func[code]==0)
|
|
479
|
-
return 0;
|
|
480
|
-
|
|
481
|
-
func[code](*n, ap, actual_x, res.data(), Scalar(1));
|
|
482
|
-
|
|
483
|
-
copy_back(res.data(),x,*n,*incx);
|
|
484
|
-
if(actual_x!=x) delete[] actual_x;
|
|
485
|
-
|
|
486
|
-
return 1;
|
|
487
|
-
}
|
|
488
|
-
|
|
489
|
-
/** DTPSV solves one of the systems of equations
|
|
490
|
-
*
|
|
491
|
-
* A*x = b, or A'*x = b,
|
|
492
|
-
*
|
|
493
|
-
* where b and x are n element vectors and A is an n by n unit, or
|
|
494
|
-
* non-unit, upper or lower triangular matrix, supplied in packed form.
|
|
495
|
-
*
|
|
496
|
-
* No test for singularity or near-singularity is included in this
|
|
497
|
-
* routine. Such tests must be performed before calling this routine.
|
|
498
|
-
*/
|
|
499
|
-
int EIGEN_BLAS_FUNC(tpsv)(char *uplo, char *opa, char *diag, int *n, RealScalar *pap, RealScalar *px, int *incx)
|
|
500
|
-
{
|
|
501
|
-
typedef void (*functype)(int, const Scalar*, Scalar*);
|
|
502
|
-
static const functype func[16] = {
|
|
503
|
-
// array index: NOTR | (UP << 2) | (NUNIT << 3)
|
|
504
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,ColMajor>::run),
|
|
505
|
-
// array index: TR | (UP << 2) | (NUNIT << 3)
|
|
506
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,RowMajor>::run),
|
|
507
|
-
// array index: ADJ | (UP << 2) | (NUNIT << 3)
|
|
508
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, Conj, RowMajor>::run),
|
|
509
|
-
0,
|
|
510
|
-
// array index: NOTR | (LO << 2) | (NUNIT << 3)
|
|
511
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|0, false,ColMajor>::run),
|
|
512
|
-
// array index: TR | (LO << 2) | (NUNIT << 3)
|
|
513
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, false,RowMajor>::run),
|
|
514
|
-
// array index: ADJ | (LO << 2) | (NUNIT << 3)
|
|
515
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|0, Conj, RowMajor>::run),
|
|
516
|
-
0,
|
|
517
|
-
// array index: NOTR | (UP << 2) | (UNIT << 3)
|
|
518
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,ColMajor>::run),
|
|
519
|
-
// array index: TR | (UP << 2) | (UNIT << 3)
|
|
520
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,RowMajor>::run),
|
|
521
|
-
// array index: ADJ | (UP << 2) | (UNIT << 3)
|
|
522
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,Conj, RowMajor>::run),
|
|
523
|
-
0,
|
|
524
|
-
// array index: NOTR | (LO << 2) | (UNIT << 3)
|
|
525
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Lower|UnitDiag,false,ColMajor>::run),
|
|
526
|
-
// array index: TR | (LO << 2) | (UNIT << 3)
|
|
527
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,false,RowMajor>::run),
|
|
528
|
-
// array index: ADJ | (LO << 2) | (UNIT << 3)
|
|
529
|
-
(internal::packed_triangular_solve_vector<Scalar,Scalar,int,OnTheLeft, Upper|UnitDiag,Conj, RowMajor>::run),
|
|
530
|
-
0
|
|
531
|
-
};
|
|
532
|
-
|
|
533
|
-
Scalar* ap = reinterpret_cast<Scalar*>(pap);
|
|
534
|
-
Scalar* x = reinterpret_cast<Scalar*>(px);
|
|
535
|
-
|
|
536
|
-
int info = 0;
|
|
537
|
-
if(UPLO(*uplo)==INVALID) info = 1;
|
|
538
|
-
else if(OP(*opa)==INVALID) info = 2;
|
|
539
|
-
else if(DIAG(*diag)==INVALID) info = 3;
|
|
540
|
-
else if(*n<0) info = 4;
|
|
541
|
-
else if(*incx==0) info = 7;
|
|
542
|
-
if(info)
|
|
543
|
-
return xerbla_(SCALAR_SUFFIX_UP"TPSV ",&info,6);
|
|
544
|
-
|
|
545
|
-
Scalar* actual_x = get_compact_vector(x,*n,*incx);
|
|
546
|
-
|
|
547
|
-
int code = OP(*opa) | (UPLO(*uplo) << 2) | (DIAG(*diag) << 3);
|
|
548
|
-
func[code](*n, ap, actual_x);
|
|
549
|
-
|
|
550
|
-
if(actual_x!=x) delete[] copy_back(actual_x,x,*n,*incx);
|
|
551
|
-
|
|
552
|
-
return 1;
|
|
553
|
-
}
|