sequenzo 0.1.18__cp310-cp310-win_amd64.whl → 0.1.19__cp310-cp310-win_amd64.whl

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  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +107 -5
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
  12. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  13. sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
  14. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  15. sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
  16. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  17. sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
  18. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  19. sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
  20. sequenzo/multidomain/cat.py +0 -53
  21. sequenzo/multidomain/idcd.py +0 -1
  22. sequenzo/openmp_setup.py +233 -0
  23. sequenzo/visualization/plot_transition_matrix.py +21 -22
  24. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
  25. sequenzo-0.1.19.dist-info/RECORD +272 -0
  26. sequenzo/dissimilarity_measures/setup.py +0 -35
  27. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  169. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  170. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  171. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  172. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  173. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  174. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  175. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  176. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  177. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  178. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  179. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  180. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  181. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  182. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  183. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  184. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  185. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  186. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  187. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  188. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  189. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  190. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  191. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  192. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  197. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  198. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  199. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  200. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  201. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  202. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  203. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  206. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  207. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  208. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  209. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  210. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  211. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  212. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  213. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
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  395. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
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@@ -1,1413 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2014-2015 Benoit Steiner <benoit.steiner.goog@gmail.com>
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- // Copyright (C) 2015 Navdeep Jaitly <ndjaitly@google.com>
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- // Copyright (C) 2014 Eric Martin <eric@ericmart.in>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_GPU_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_GPU_H
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-
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- #if defined(EIGEN_USE_GPU) && defined(EIGEN_GPUCC)
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-
17
- namespace Eigen {
18
-
19
- template<typename Scalar, typename Index, typename LhsMapper,
20
- typename RhsMapper, typename OutputMapper, bool needs_edge_check>
21
- __device__ EIGEN_STRONG_INLINE void
22
- EigenContractionKernelInternal(const LhsMapper lhs, const RhsMapper rhs,
23
- const OutputMapper output, Scalar* lhs_shmem, Scalar* rhs_shmem,
24
- const Index m_size, const Index n_size, const Index k_size) {
25
-
26
- const Index m_block_idx = blockIdx.x;
27
- const Index n_block_idx = blockIdx.y;
28
-
29
- const Index base_m = 64 * m_block_idx;
30
- const Index base_n = 64 * n_block_idx;
31
-
32
- // declare and initialize 64 registers for output 8x8 block
33
-
34
- // prefetch registers
35
- Scalar lhs_pf0;
36
- Scalar lhs_pf1;
37
- Scalar lhs_pf2;
38
- Scalar lhs_pf3;
39
- Scalar lhs_pf4;
40
- Scalar lhs_pf5;
41
- Scalar lhs_pf6;
42
- Scalar lhs_pf7;
43
-
44
- Scalar rhs_pf0;
45
- Scalar rhs_pf1;
46
- Scalar rhs_pf2;
47
- Scalar rhs_pf3;
48
- Scalar rhs_pf4;
49
- Scalar rhs_pf5;
50
- Scalar rhs_pf6;
51
- Scalar rhs_pf7;
52
-
53
- // shared memory is formatted
54
- // (contract idx in block, nocontract idx in block, block idx)
55
- // where block idx is column major. This transposition limits the number of
56
- // bank conflicts when reading the LHS. The core idea is that since the contracting
57
- // index is shared by both sides, then the contracting index should be in threadIdx.x.
58
-
59
- // On the LHS, we pad each row inside of each block with an extra element. This makes
60
- // each block 8 rows of 9 elements, which is 72 elements. This gives no bank conflicts
61
- // on writes and very few 2-way conflicts on reads. There is an 8x8 grid of these blocks.
62
-
63
- // On the RHS we just add 8 padding elements to the end of each block. This gives no bank
64
- // conflicts on writes and also none on reads.
65
-
66
- // storage indices
67
- const Index lhs_store_idx_base = threadIdx.y * 72 + threadIdx.x * 9 + threadIdx.z;
68
- const Index rhs_store_idx_base = threadIdx.y * 72 + threadIdx.z * 8 + threadIdx.x;
69
-
70
- const Index lhs_store_idx_0 = lhs_store_idx_base + 576 * 0;
71
- const Index lhs_store_idx_1 = lhs_store_idx_base + 576 * 1;
72
- const Index lhs_store_idx_2 = lhs_store_idx_base + 576 * 2;
73
- const Index lhs_store_idx_3 = lhs_store_idx_base + 576 * 3;
74
- const Index lhs_store_idx_4 = lhs_store_idx_base + 576 * 4;
75
- const Index lhs_store_idx_5 = lhs_store_idx_base + 576 * 5;
76
- const Index lhs_store_idx_6 = lhs_store_idx_base + 576 * 6;
77
- const Index lhs_store_idx_7 = lhs_store_idx_base + 576 * 7;
78
-
79
- const Index rhs_store_idx_0 = rhs_store_idx_base + 576 * 0;
80
- const Index rhs_store_idx_1 = rhs_store_idx_base + 576 * 1;
81
- const Index rhs_store_idx_2 = rhs_store_idx_base + 576 * 2;
82
- const Index rhs_store_idx_3 = rhs_store_idx_base + 576 * 3;
83
- const Index rhs_store_idx_4 = rhs_store_idx_base + 576 * 4;
84
- const Index rhs_store_idx_5 = rhs_store_idx_base + 576 * 5;
85
- const Index rhs_store_idx_6 = rhs_store_idx_base + 576 * 6;
86
- const Index rhs_store_idx_7 = rhs_store_idx_base + 576 * 7;
87
-
88
- // in the loading code, the following variables are important:
89
- // threadIdx.x: the vertical position in an 8x8 block
90
- // threadIdx.y: the vertical index of the 8x8 block in the grid
91
- // threadIdx.z: the horizontal position in an 8x8 block
92
- // k: the horizontal index of the 8x8 block in the grid
93
- //
94
- // The k parameter is implicit (it was the loop counter for a loop that went
95
- // from 0 to <8, but now that loop is unrolled in the below code.
96
-
97
- const Index load_idx_vert = threadIdx.x + 8 * threadIdx.y;
98
- const Index lhs_vert = base_m + load_idx_vert;
99
-
100
- #define prefetchIntoRegisters(base_k) \
101
- { \
102
- lhs_pf0 = conv(0); \
103
- lhs_pf1 = conv(0); \
104
- lhs_pf2 = conv(0); \
105
- lhs_pf3 = conv(0); \
106
- lhs_pf4 = conv(0); \
107
- lhs_pf5 = conv(0); \
108
- lhs_pf6 = conv(0); \
109
- lhs_pf7 = conv(0); \
110
- \
111
- rhs_pf0 = conv(0); \
112
- rhs_pf1 = conv(0); \
113
- rhs_pf2 = conv(0); \
114
- rhs_pf3 = conv(0); \
115
- rhs_pf4 = conv(0); \
116
- rhs_pf5 = conv(0); \
117
- rhs_pf6 = conv(0); \
118
- rhs_pf7 = conv(0); \
119
- \
120
- if (!needs_edge_check || lhs_vert < m_size) { \
121
- const Index lhs_horiz_0 = base_k + threadIdx.z + 0 * 8; \
122
- const Index lhs_horiz_1 = base_k + threadIdx.z + 1 * 8; \
123
- const Index lhs_horiz_2 = base_k + threadIdx.z + 2 * 8; \
124
- const Index lhs_horiz_3 = base_k + threadIdx.z + 3 * 8; \
125
- const Index lhs_horiz_4 = base_k + threadIdx.z + 4 * 8; \
126
- const Index lhs_horiz_5 = base_k + threadIdx.z + 5 * 8; \
127
- const Index lhs_horiz_6 = base_k + threadIdx.z + 6 * 8; \
128
- const Index lhs_horiz_7 = base_k + threadIdx.z + 7 * 8; \
129
- \
130
- if (!needs_edge_check || lhs_horiz_7 < k_size) { \
131
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
132
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
133
- lhs_pf2 = lhs(lhs_vert, lhs_horiz_2); \
134
- lhs_pf3 = lhs(lhs_vert, lhs_horiz_3); \
135
- lhs_pf4 = lhs(lhs_vert, lhs_horiz_4); \
136
- lhs_pf5 = lhs(lhs_vert, lhs_horiz_5); \
137
- lhs_pf6 = lhs(lhs_vert, lhs_horiz_6); \
138
- lhs_pf7 = lhs(lhs_vert, lhs_horiz_7); \
139
- } else if (lhs_horiz_6 < k_size) { \
140
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
141
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
142
- lhs_pf2 = lhs(lhs_vert, lhs_horiz_2); \
143
- lhs_pf3 = lhs(lhs_vert, lhs_horiz_3); \
144
- lhs_pf4 = lhs(lhs_vert, lhs_horiz_4); \
145
- lhs_pf5 = lhs(lhs_vert, lhs_horiz_5); \
146
- lhs_pf6 = lhs(lhs_vert, lhs_horiz_6); \
147
- } else if (lhs_horiz_5 < k_size) { \
148
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
149
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
150
- lhs_pf2 = lhs(lhs_vert, lhs_horiz_2); \
151
- lhs_pf3 = lhs(lhs_vert, lhs_horiz_3); \
152
- lhs_pf4 = lhs(lhs_vert, lhs_horiz_4); \
153
- lhs_pf5 = lhs(lhs_vert, lhs_horiz_5); \
154
- } else if (lhs_horiz_4 < k_size) { \
155
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
156
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
157
- lhs_pf2 = lhs(lhs_vert, lhs_horiz_2); \
158
- lhs_pf3 = lhs(lhs_vert, lhs_horiz_3); \
159
- lhs_pf4 = lhs(lhs_vert, lhs_horiz_4); \
160
- } else if (lhs_horiz_3 < k_size) { \
161
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
162
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
163
- lhs_pf2 = lhs(lhs_vert, lhs_horiz_2); \
164
- lhs_pf3 = lhs(lhs_vert, lhs_horiz_3); \
165
- } else if (lhs_horiz_2 < k_size) { \
166
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
167
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
168
- lhs_pf2 = lhs(lhs_vert, lhs_horiz_2); \
169
- } else if (lhs_horiz_1 < k_size) { \
170
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
171
- lhs_pf1 = lhs(lhs_vert, lhs_horiz_1); \
172
- } else if (lhs_horiz_0 < k_size) { \
173
- lhs_pf0 = lhs(lhs_vert, lhs_horiz_0); \
174
- } \
175
- } \
176
- \
177
- const Index rhs_vert = base_k + load_idx_vert; \
178
- if (!needs_edge_check || rhs_vert < k_size) { \
179
- const Index rhs_horiz_0 = base_n + threadIdx.z + 0 * 8; \
180
- const Index rhs_horiz_1 = base_n + threadIdx.z + 1 * 8; \
181
- const Index rhs_horiz_2 = base_n + threadIdx.z + 2 * 8; \
182
- const Index rhs_horiz_3 = base_n + threadIdx.z + 3 * 8; \
183
- const Index rhs_horiz_4 = base_n + threadIdx.z + 4 * 8; \
184
- const Index rhs_horiz_5 = base_n + threadIdx.z + 5 * 8; \
185
- const Index rhs_horiz_6 = base_n + threadIdx.z + 6 * 8; \
186
- const Index rhs_horiz_7 = base_n + threadIdx.z + 7 * 8; \
187
- \
188
- if (rhs_horiz_7 < n_size) { \
189
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
190
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
191
- rhs_pf2 = rhs(rhs_vert, rhs_horiz_2); \
192
- rhs_pf3 = rhs(rhs_vert, rhs_horiz_3); \
193
- rhs_pf4 = rhs(rhs_vert, rhs_horiz_4); \
194
- rhs_pf5 = rhs(rhs_vert, rhs_horiz_5); \
195
- rhs_pf6 = rhs(rhs_vert, rhs_horiz_6); \
196
- rhs_pf7 = rhs(rhs_vert, rhs_horiz_7); \
197
- } else if (rhs_horiz_6 < n_size) { \
198
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
199
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
200
- rhs_pf2 = rhs(rhs_vert, rhs_horiz_2); \
201
- rhs_pf3 = rhs(rhs_vert, rhs_horiz_3); \
202
- rhs_pf4 = rhs(rhs_vert, rhs_horiz_4); \
203
- rhs_pf5 = rhs(rhs_vert, rhs_horiz_5); \
204
- rhs_pf6 = rhs(rhs_vert, rhs_horiz_6); \
205
- } else if (rhs_horiz_5 < n_size) { \
206
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
207
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
208
- rhs_pf2 = rhs(rhs_vert, rhs_horiz_2); \
209
- rhs_pf3 = rhs(rhs_vert, rhs_horiz_3); \
210
- rhs_pf4 = rhs(rhs_vert, rhs_horiz_4); \
211
- rhs_pf5 = rhs(rhs_vert, rhs_horiz_5); \
212
- } else if (rhs_horiz_4 < n_size) { \
213
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
214
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
215
- rhs_pf2 = rhs(rhs_vert, rhs_horiz_2); \
216
- rhs_pf3 = rhs(rhs_vert, rhs_horiz_3); \
217
- rhs_pf4 = rhs(rhs_vert, rhs_horiz_4); \
218
- } else if (rhs_horiz_3 < n_size) { \
219
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
220
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
221
- rhs_pf2 = rhs(rhs_vert, rhs_horiz_2); \
222
- rhs_pf3 = rhs(rhs_vert, rhs_horiz_3); \
223
- } else if (rhs_horiz_2 < n_size) { \
224
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
225
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
226
- rhs_pf2 = rhs(rhs_vert, rhs_horiz_2); \
227
- } else if (rhs_horiz_1 < n_size) { \
228
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
229
- rhs_pf1 = rhs(rhs_vert, rhs_horiz_1); \
230
- } else if (rhs_horiz_0 < n_size) { \
231
- rhs_pf0 = rhs(rhs_vert, rhs_horiz_0); \
232
- } \
233
- } \
234
- } \
235
-
236
- #define writeRegToShmem(_) \
237
- lhs_shmem[lhs_store_idx_0] = lhs_pf0; \
238
- rhs_shmem[rhs_store_idx_0] = rhs_pf0; \
239
- \
240
- lhs_shmem[lhs_store_idx_1] = lhs_pf1; \
241
- rhs_shmem[rhs_store_idx_1] = rhs_pf1; \
242
- \
243
- lhs_shmem[lhs_store_idx_2] = lhs_pf2; \
244
- rhs_shmem[rhs_store_idx_2] = rhs_pf2; \
245
- \
246
- lhs_shmem[lhs_store_idx_3] = lhs_pf3; \
247
- rhs_shmem[rhs_store_idx_3] = rhs_pf3; \
248
- \
249
- lhs_shmem[lhs_store_idx_4] = lhs_pf4; \
250
- rhs_shmem[rhs_store_idx_4] = rhs_pf4; \
251
- \
252
- lhs_shmem[lhs_store_idx_5] = lhs_pf5; \
253
- rhs_shmem[rhs_store_idx_5] = rhs_pf5; \
254
- \
255
- lhs_shmem[lhs_store_idx_6] = lhs_pf6; \
256
- rhs_shmem[rhs_store_idx_6] = rhs_pf6; \
257
- \
258
- lhs_shmem[lhs_store_idx_7] = lhs_pf7; \
259
- rhs_shmem[rhs_store_idx_7] = rhs_pf7; \
260
-
261
- // declare and initialize result array
262
- #define res(i, j) _res_##i##j
263
- #define initResultRow(i) \
264
- Scalar res(i, 0) = conv(0); \
265
- Scalar res(i, 1) = conv(0); \
266
- Scalar res(i, 2) = conv(0); \
267
- Scalar res(i, 3) = conv(0); \
268
- Scalar res(i, 4) = conv(0); \
269
- Scalar res(i, 5) = conv(0); \
270
- Scalar res(i, 6) = conv(0); \
271
- Scalar res(i, 7) = conv(0); \
272
-
273
- internal::scalar_cast_op<int, Scalar> conv;
274
- initResultRow(0);
275
- initResultRow(1);
276
- initResultRow(2);
277
- initResultRow(3);
278
- initResultRow(4);
279
- initResultRow(5);
280
- initResultRow(6);
281
- initResultRow(7);
282
- #undef initResultRow
283
-
284
- for (Index base_k = 0; base_k < k_size; base_k += 64) {
285
- // wait for previous iteration to finish with shmem. Despite common sense,
286
- // the code is a bit faster with this here then at bottom of loop
287
- __syncthreads();
288
-
289
- prefetchIntoRegisters(base_k);
290
- writeRegToShmem();
291
-
292
- #undef prefetchIntoRegisters
293
- #undef writeRegToShmem
294
-
295
- // wait for shared mem packing to be done before starting computation
296
- __syncthreads();
297
-
298
- // compute 8x8 matrix product by outer product. This involves packing one column
299
- // of LHS and one row of RHS into registers (takes 16 registers).
300
-
301
- #define lcol(i) _lcol##i
302
- Scalar lcol(0);
303
- Scalar lcol(1);
304
- Scalar lcol(2);
305
- Scalar lcol(3);
306
- Scalar lcol(4);
307
- Scalar lcol(5);
308
- Scalar lcol(6);
309
- Scalar lcol(7);
310
-
311
- #define rrow(j) _rrow##j
312
- Scalar rrow(0);
313
- Scalar rrow(1);
314
- Scalar rrow(2);
315
- Scalar rrow(3);
316
- Scalar rrow(4);
317
- Scalar rrow(5);
318
- Scalar rrow(6);
319
- Scalar rrow(7);
320
-
321
- // Now x corresponds to k, y to m, and z to n
322
- const Scalar* lhs_block = &lhs_shmem[threadIdx.x + 9 * threadIdx.y];
323
- const Scalar* rhs_block = &rhs_shmem[threadIdx.x + 8 * threadIdx.z];
324
-
325
- #define lhs_element(i, j) lhs_block[72 * ((i) + 8 * (j))]
326
- #define rhs_element(i, j) rhs_block[72 * ((i) + 8 * (j))]
327
-
328
- #define loadData(i, j) \
329
- lcol(0) = lhs_element(0, j); \
330
- rrow(0) = rhs_element(i, 0); \
331
- lcol(1) = lhs_element(1, j); \
332
- rrow(1) = rhs_element(i, 1); \
333
- lcol(2) = lhs_element(2, j); \
334
- rrow(2) = rhs_element(i, 2); \
335
- lcol(3) = lhs_element(3, j); \
336
- rrow(3) = rhs_element(i, 3); \
337
- lcol(4) = lhs_element(4, j); \
338
- rrow(4) = rhs_element(i, 4); \
339
- lcol(5) = lhs_element(5, j); \
340
- rrow(5) = rhs_element(i, 5); \
341
- lcol(6) = lhs_element(6, j); \
342
- rrow(6) = rhs_element(i, 6); \
343
- lcol(7) = lhs_element(7, j); \
344
- rrow(7) = rhs_element(i, 7); \
345
-
346
- #define computeCol(j) \
347
- res(0, j) += lcol(0) * rrow(j); \
348
- res(1, j) += lcol(1) * rrow(j); \
349
- res(2, j) += lcol(2) * rrow(j); \
350
- res(3, j) += lcol(3) * rrow(j); \
351
- res(4, j) += lcol(4) * rrow(j); \
352
- res(5, j) += lcol(5) * rrow(j); \
353
- res(6, j) += lcol(6) * rrow(j); \
354
- res(7, j) += lcol(7) * rrow(j); \
355
-
356
- #define computePass(i) \
357
- loadData(i, i); \
358
- \
359
- computeCol(0); \
360
- computeCol(1); \
361
- computeCol(2); \
362
- computeCol(3); \
363
- computeCol(4); \
364
- computeCol(5); \
365
- computeCol(6); \
366
- computeCol(7); \
367
-
368
- computePass(0);
369
- computePass(1);
370
- computePass(2);
371
- computePass(3);
372
- computePass(4);
373
- computePass(5);
374
- computePass(6);
375
- computePass(7);
376
-
377
- #undef lcol
378
- #undef rrow
379
- #undef lhs_element
380
- #undef rhs_element
381
- #undef loadData
382
- #undef computeCol
383
- #undef computePass
384
- } // end loop over k
385
-
386
- // we've now iterated over all of the large (ie width 64) k blocks and
387
- // accumulated results in registers. At this point thread (x, y, z) contains
388
- // the sum across all big k blocks of the product of little k block of index (x, y)
389
- // with block of index (y, z). To compute the final output, we need to reduce
390
- // the 8 threads over y by summation.
391
- #if defined(EIGEN_HIPCC) || (defined(EIGEN_CUDA_SDK_VER) && EIGEN_CUDA_SDK_VER < 90000)
392
- #define shuffleInc(i, j, mask) res(i, j) += __shfl_xor(res(i, j), mask)
393
- #else
394
- #define shuffleInc(i, j, mask) res(i, j) += __shfl_xor_sync(0xFFFFFFFF, res(i, j), mask)
395
- #endif
396
-
397
- #define reduceRow(i, mask) \
398
- shuffleInc(i, 0, mask); \
399
- shuffleInc(i, 1, mask); \
400
- shuffleInc(i, 2, mask); \
401
- shuffleInc(i, 3, mask); \
402
- shuffleInc(i, 4, mask); \
403
- shuffleInc(i, 5, mask); \
404
- shuffleInc(i, 6, mask); \
405
- shuffleInc(i, 7, mask); \
406
-
407
- #define reduceMatrix(mask) \
408
- reduceRow(0, mask); \
409
- reduceRow(1, mask); \
410
- reduceRow(2, mask); \
411
- reduceRow(3, mask); \
412
- reduceRow(4, mask); \
413
- reduceRow(5, mask); \
414
- reduceRow(6, mask); \
415
- reduceRow(7, mask); \
416
-
417
- // actually perform the reduction, now each thread of index (_, y, z)
418
- // contains the correct values in its registers that belong in the output
419
- // block
420
- reduceMatrix(1);
421
- reduceMatrix(2);
422
- reduceMatrix(4);
423
-
424
- #undef shuffleInc
425
- #undef reduceRow
426
- #undef reduceMatrix
427
-
428
- // now we need to copy the 64 values into main memory. We can't split work
429
- // among threads because all variables are in registers. There's 2 ways
430
- // to do this:
431
- // (1) have 1 thread do 64 writes from registers into global memory
432
- // (2) have 1 thread do 64 writes into shared memory, and then 8 threads
433
- // each do 8 writes into global memory. We can just overwrite the shared
434
- // memory from the problem we just solved.
435
- // (2) is slightly faster than (1) due to less branching and more ILP
436
-
437
- // TODO: won't yield much gain, but could just use currently unused shared mem
438
- // and then we won't have to sync
439
- // wait for shared mem to be out of use
440
- __syncthreads();
441
-
442
- #define writeResultShmem(i, j) \
443
- lhs_shmem[i + 8 * threadIdx.y + 64 * threadIdx.z + 512 * j] = res(i, j); \
444
-
445
- #define writeRow(i) \
446
- writeResultShmem(i, 0); \
447
- writeResultShmem(i, 1); \
448
- writeResultShmem(i, 2); \
449
- writeResultShmem(i, 3); \
450
- writeResultShmem(i, 4); \
451
- writeResultShmem(i, 5); \
452
- writeResultShmem(i, 6); \
453
- writeResultShmem(i, 7); \
454
-
455
- if (threadIdx.x == 0) {
456
- writeRow(0);
457
- writeRow(1);
458
- writeRow(2);
459
- writeRow(3);
460
- writeRow(4);
461
- writeRow(5);
462
- writeRow(6);
463
- writeRow(7);
464
- }
465
- #undef writeResultShmem
466
- #undef writeRow
467
-
468
- const int max_i_write = numext::mini((int)((m_size - base_m - threadIdx.y + 7) / 8), 8);
469
- const int max_j_write = numext::mini((int)((n_size - base_n - threadIdx.z + 7) / 8), 8);
470
-
471
- if (threadIdx.x < max_i_write) {
472
- if (max_j_write == 8) {
473
- // TODO: can i trade bank conflicts for coalesced writes?
474
- Scalar val0 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 0];
475
- Scalar val1 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 1];
476
- Scalar val2 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 2];
477
- Scalar val3 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 3];
478
- Scalar val4 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 4];
479
- Scalar val5 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 5];
480
- Scalar val6 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 6];
481
- Scalar val7 = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * 7];
482
-
483
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 0) = val0;
484
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 1) = val1;
485
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 2) = val2;
486
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 3) = val3;
487
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 4) = val4;
488
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 5) = val5;
489
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 6) = val6;
490
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * 7) = val7;
491
- } else {
492
- #pragma unroll 7
493
- for (int j = 0; j < max_j_write; j++) {
494
- Scalar val = lhs_shmem[threadIdx.x + 8 * threadIdx.y + 64 * threadIdx.z + 512 * j];
495
- output(base_m + threadIdx.y + 8 * threadIdx.x, base_n + threadIdx.z + 8 * j) = val;
496
- }
497
- }
498
- }
499
- #undef res
500
- }
501
-
502
-
503
- template<typename Scalar, typename Index, typename LhsMapper,
504
- typename RhsMapper, typename OutputMapper>
505
- __global__ void
506
- #if defined(EIGEN_HIPCC)
507
- __launch_bounds__(512, 1)
508
- #else
509
- __launch_bounds__(512)
510
- #endif
511
- EigenContractionKernel(const LhsMapper lhs, const RhsMapper rhs,
512
- const OutputMapper output,
513
- const Index m_size, const Index n_size, const Index k_size) {
514
- __shared__ Scalar lhs_shmem[72 * 64];
515
- __shared__ Scalar rhs_shmem[72 * 64];
516
-
517
- const Index m_block_idx = blockIdx.x;
518
- const Index n_block_idx = blockIdx.y;
519
-
520
- const Index base_m = 64 * m_block_idx;
521
- const Index base_n = 64 * n_block_idx;
522
-
523
- if (base_m + 63 < m_size && base_n + 63 < n_size) {
524
- EigenContractionKernelInternal<Scalar, Index, LhsMapper, RhsMapper, OutputMapper, false>(lhs, rhs, output, lhs_shmem, rhs_shmem, m_size, n_size, k_size);
525
- } else {
526
- EigenContractionKernelInternal<Scalar, Index, LhsMapper, RhsMapper, OutputMapper, true>(lhs, rhs, output, lhs_shmem, rhs_shmem, m_size, n_size, k_size);
527
- }
528
- }
529
-
530
-
531
- template<typename Index, typename LhsMapper,
532
- typename RhsMapper, typename OutputMapper, bool CHECK_LHS_BOUNDARY,
533
- bool CHECK_RHS_BOUNDARY>
534
- __device__ __forceinline__ void
535
- EigenFloatContractionKernelInternal16x16(const LhsMapper lhs, const RhsMapper rhs,
536
- const OutputMapper output, float2 lhs_shmem2[][16],
537
- float2 rhs_shmem2[][8], const Index m_size,
538
- const Index n_size, const Index k_size,
539
- const Index base_m, const Index base_n) {
540
-
541
- // prefetch registers
542
- float4 lhs_pf0, rhs_pf0;
543
-
544
- float4 results[4];
545
- for (int i=0; i < 4; i++) {
546
- results[i].x = results[i].y = results[i].z = results[i].w = 0;
547
- }
548
-
549
- #define prefetch_lhs(reg, row, col) \
550
- if (!CHECK_LHS_BOUNDARY) { \
551
- if (col < k_size) { \
552
- reg =lhs.template loadPacket<float4,Unaligned>(row, col); \
553
- } \
554
- } else { \
555
- if (col < k_size) { \
556
- if (row + 3 < m_size) { \
557
- reg =lhs.template loadPacket<float4,Unaligned>(row, col); \
558
- } else if (row + 2 < m_size) { \
559
- reg.x =lhs(row + 0, col); \
560
- reg.y =lhs(row + 1, col); \
561
- reg.z =lhs(row + 2, col); \
562
- } else if (row + 1 < m_size) { \
563
- reg.x =lhs(row + 0, col); \
564
- reg.y =lhs(row + 1, col); \
565
- } else if (row < m_size) { \
566
- reg.x =lhs(row + 0, col); \
567
- } \
568
- } \
569
- } \
570
-
571
- Index lhs_vert = base_m+threadIdx.x*4;
572
-
573
- for (Index k = 0; k < k_size; k += 16) {
574
-
575
- lhs_pf0 = internal::pset1<float4>(0);
576
- rhs_pf0 = internal::pset1<float4>(0);
577
-
578
- Index lhs_horiz = threadIdx.y+k;
579
- prefetch_lhs(lhs_pf0, lhs_vert, lhs_horiz)
580
-
581
- Index rhs_vert = k+(threadIdx.x%4)*4;
582
- Index rhs_horiz0 = (threadIdx.x>>2)+threadIdx.y*4+base_n;
583
-
584
- if (!CHECK_RHS_BOUNDARY) {
585
- if ((rhs_vert + 3) < k_size) {
586
- // just CHECK_RHS_BOUNDARY
587
- rhs_pf0 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz0);
588
- } else if (rhs_vert + 2 < k_size) {
589
- // just CHECK_RHS_BOUNDARY
590
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
591
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
592
- rhs_pf0.z = rhs(rhs_vert + 2, rhs_horiz0);
593
- } else if (rhs_vert + 1 < k_size) {
594
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
595
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
596
- } else if (rhs_vert < k_size) {
597
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
598
- }
599
- } else {
600
- if (rhs_horiz0 < n_size) {
601
- if ((rhs_vert + 3) < k_size) {
602
- rhs_pf0 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz0);
603
- } else if ((rhs_vert + 2) < k_size) {
604
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
605
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
606
- rhs_pf0.z = rhs(rhs_vert + 2, rhs_horiz0);
607
- } else if ((rhs_vert + 1) < k_size) {
608
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
609
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
610
- } else if (rhs_vert < k_size) {
611
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
612
- }
613
- }
614
- }
615
- float x1, x2 ;
616
- // the following can be a bitwise operation..... some day.
617
- if((threadIdx.x%8) < 4) {
618
- x1 = rhs_pf0.y;
619
- x2 = rhs_pf0.w;
620
- } else {
621
- x1 = rhs_pf0.x;
622
- x2 = rhs_pf0.z;
623
- }
624
- #if defined(EIGEN_HIPCC) || (defined(EIGEN_CUDA_SDK_VER) && EIGEN_CUDA_SDK_VER < 90000)
625
- x1 = __shfl_xor(x1, 4);
626
- x2 = __shfl_xor(x2, 4);
627
- #else
628
- x1 = __shfl_xor_sync(0xFFFFFFFF, x1, 4);
629
- x2 = __shfl_xor_sync(0xFFFFFFFF, x2, 4);
630
- #endif
631
- if((threadIdx.x%8) < 4) {
632
- rhs_pf0.y = x1;
633
- rhs_pf0.w = x2;
634
- } else {
635
- rhs_pf0.x = x1;
636
- rhs_pf0.z = x2;
637
- }
638
-
639
- // We have 64 features.
640
- // Row 0 -> times (0, 4, 8, 12, 1, 5, 9, 13) for features 0, 1.
641
- // Row 1 -> times (0, 4, 8, 12, 1, 5, 9, 13) for features 2, 3.
642
- // ...
643
- // Row 31 -> times (0, 4, 8, 12, 1, 5, 9, 13) for features 62, 63
644
- // Row 32 -> times (2, 6, 10, 14, 3, 7, 11, 15) for features 0, 1
645
- // ...
646
- rhs_shmem2[(threadIdx.x>>3)+ threadIdx.y*2][threadIdx.x%8] = make_float2(rhs_pf0.x, rhs_pf0.y);
647
- rhs_shmem2[(threadIdx.x>>3)+ threadIdx.y*2+32][threadIdx.x%8] = make_float2(rhs_pf0.z, rhs_pf0.w);
648
-
649
- // Row 0 (time 0) -> features (0, 1), (4, 5), .. (28, 29), (32, 33), .. (60, 61)
650
- // Row 1 (time 1) -> features (0, 1), (4, 5), .. (28, 29), (32, 33), .. (60, 61)
651
- // ...
652
- // Row 15 (time 15) -> features (0, 1), (4, 5), .. (28, 29), (32, 33), .. (60, 61)
653
- // Row 16 (time 0) -> features (2, 3), (6, 7), .. (30, 31), (34, 35), .. (62, 63)
654
- // ...
655
-
656
- lhs_shmem2[threadIdx.y][threadIdx.x] = make_float2(lhs_pf0.x, lhs_pf0.y);
657
- lhs_shmem2[threadIdx.y+16][threadIdx.x] = make_float2(lhs_pf0.z, lhs_pf0.w);
658
-
659
-
660
- #define add_vals(fl1, fl2, fr1, fr2)\
661
- results[0].x += fl1.x * fr1.x;\
662
- results[0].y += fl1.y * fr1.x;\
663
- results[0].z += fl2.x * fr1.x;\
664
- results[0].w += fl2.y * fr1.x;\
665
- \
666
- results[1].x += fl1.x * fr1.y;\
667
- results[1].y += fl1.y * fr1.y;\
668
- results[1].z += fl2.x * fr1.y;\
669
- results[1].w += fl2.y * fr1.y;\
670
- \
671
- results[2].x += fl1.x * fr2.x;\
672
- results[2].y += fl1.y * fr2.x;\
673
- results[2].z += fl2.x * fr2.x;\
674
- results[2].w += fl2.y * fr2.x;\
675
- \
676
- results[3].x += fl1.x * fr2.y;\
677
- results[3].y += fl1.y * fr2.y;\
678
- results[3].z += fl2.x * fr2.y;\
679
- results[3].w += fl2.y * fr2.y;\
680
-
681
- __syncthreads();
682
-
683
- // Do the multiplies.
684
- #pragma unroll
685
- for (int koff = 0; koff < 16; koff ++) {
686
- // 32 x threads.
687
- float2 fl1 = lhs_shmem2[koff][threadIdx.x];
688
- float2 fl2 = lhs_shmem2[koff + 16][threadIdx.x];
689
-
690
- int start_feature = threadIdx.y * 4;
691
- float2 fr1 = rhs_shmem2[(start_feature>>1) + 32*((koff%4)/2)][koff/4 + (koff%2)*4];
692
- float2 fr2 = rhs_shmem2[(start_feature>>1) + 1 + 32*((koff%4)/2)][koff/4 + (koff%2)*4];
693
-
694
- add_vals(fl1, fl2, fr1, fr2)
695
- }
696
- __syncthreads();
697
- }
698
-
699
- #undef prefetch_lhs
700
- #undef add_vals
701
-
702
- Index horiz_base = threadIdx.y*4+base_n;
703
- if (!CHECK_LHS_BOUNDARY && !CHECK_RHS_BOUNDARY) {
704
- for (int i = 0; i < 4; i++) {
705
- output(lhs_vert, horiz_base + i) = results[i].x;
706
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
707
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
708
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
709
- }
710
- } else if (!CHECK_RHS_BOUNDARY) {
711
- // CHECK LHS
712
- if (lhs_vert + 3 < m_size) {
713
- for (int i = 0; i < 4; i++) {
714
- output(lhs_vert, horiz_base + i) = results[i].x;
715
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
716
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
717
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
718
- }
719
- } else if (lhs_vert + 2 < m_size) {
720
- for (int i = 0; i < 4; i++) {
721
- output(lhs_vert, horiz_base + i) = results[i].x;
722
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
723
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
724
- }
725
- } else if (lhs_vert + 1 < m_size) {
726
- for (int i = 0; i < 4; i++) {
727
- output(lhs_vert, horiz_base + i) = results[i].x;
728
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
729
- }
730
- } else if (lhs_vert < m_size) {
731
- for (int i = 0; i < 4; i++) {
732
- output(lhs_vert, horiz_base + i) = results[i].x;
733
- }
734
- }
735
- } else if (!CHECK_LHS_BOUNDARY) {
736
- // CHECK RHS
737
- /*
738
- int ncols_rem = fminf(n_size- horiz_base, 4);
739
- for (int i = 0; i < ncols_rem; i++) {
740
- output(lhs_vert, horiz_base + i) = results[i].x;
741
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
742
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
743
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
744
- }*/
745
- for (int i = 0; i < 4; i++) {
746
- if (horiz_base+i < n_size) {
747
- output(lhs_vert, horiz_base + i) = results[i].x;
748
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
749
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
750
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
751
- }
752
- }
753
- } else {
754
- // CHECK both boundaries.
755
- for (int i = 0; i < 4; i++) {
756
- if (horiz_base+i < n_size) {
757
- if (lhs_vert < m_size)
758
- output(lhs_vert, horiz_base + i) = results[i].x;
759
- if (lhs_vert + 1 < m_size)
760
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
761
- if (lhs_vert + 2 < m_size)
762
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
763
- if (lhs_vert + 3 < m_size)
764
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
765
- }
766
- }
767
- }
768
- }
769
-
770
-
771
- template<typename Index, typename LhsMapper,
772
- typename RhsMapper, typename OutputMapper, bool CHECK_LHS_BOUNDARY,
773
- bool CHECK_RHS_BOUNDARY>
774
- __device__ __forceinline__ void
775
- EigenFloatContractionKernelInternal(const LhsMapper lhs, const RhsMapper rhs,
776
- const OutputMapper output, float2 lhs_shmem2[][32],
777
- float2 rhs_shmem2[][8], const Index m_size,
778
- const Index n_size, const Index k_size,
779
- const Index base_m, const Index base_n) {
780
-
781
- // prefetch registers
782
- float4 lhs_pf0, lhs_pf1, lhs_pf2, lhs_pf3;
783
- float4 rhs_pf0, rhs_pf1;
784
-
785
- float4 results[8];
786
- for (int i=0; i < 8; i++) {
787
- results[i].x = results[i].y = results[i].z = results[i].w = 0;
788
- }
789
-
790
- Index lhs_vert = base_m+threadIdx.x*4+(threadIdx.y%4)*32;
791
- for (Index k = 0; k < k_size; k += 32) {
792
- lhs_pf0 = internal::pset1<float4>(0);
793
- lhs_pf1 = internal::pset1<float4>(0);
794
- lhs_pf2 = internal::pset1<float4>(0);
795
- lhs_pf3 = internal::pset1<float4>(0);
796
-
797
- rhs_pf0 = internal::pset1<float4>(0);
798
- rhs_pf1 = internal::pset1<float4>(0);
799
-
800
- if (!CHECK_LHS_BOUNDARY) {
801
- if ((threadIdx.y/4+k+24) < k_size) {
802
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
803
- lhs_pf1 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+8));
804
- lhs_pf2 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+16));
805
- lhs_pf3 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+24));
806
- } else if ((threadIdx.y/4+k+16) < k_size) {
807
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
808
- lhs_pf1 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+8));
809
- lhs_pf2 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+16));
810
- } else if ((threadIdx.y/4+k+8) < k_size) {
811
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
812
- lhs_pf1 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+8));
813
- } else if ((threadIdx.y/4+k) < k_size) {
814
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
815
- }
816
- } else {
817
- // just CHECK_LHS_BOUNDARY
818
- if (lhs_vert + 3 < m_size) {
819
- if ((threadIdx.y/4+k+24) < k_size) {
820
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
821
- lhs_pf1 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+8));
822
- lhs_pf2 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+16));
823
- lhs_pf3 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+24));
824
- } else if ((threadIdx.y/4+k+16) < k_size) {
825
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
826
- lhs_pf1 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+8));
827
- lhs_pf2 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+16));
828
- } else if ((threadIdx.y/4+k+8) < k_size) {
829
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
830
- lhs_pf1 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k+8));
831
- } else if ((threadIdx.y/4+k) < k_size) {
832
- lhs_pf0 =lhs.template loadPacket<float4,Unaligned>(lhs_vert, (threadIdx.y/4+k));
833
- }
834
- } else if (lhs_vert + 2 < m_size) {
835
- if ((threadIdx.y/4+k+24) < k_size) {
836
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
837
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
838
- lhs_pf0.z =lhs(lhs_vert + 2, (threadIdx.y/4+k));
839
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
840
- lhs_pf1.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+8));
841
- lhs_pf1.z =lhs(lhs_vert + 2, (threadIdx.y/4+k+8));
842
- lhs_pf2.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+16));
843
- lhs_pf2.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+16));
844
- lhs_pf2.z =lhs(lhs_vert + 2, (threadIdx.y/4+k+16));
845
- lhs_pf3.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+24));
846
- lhs_pf3.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+24));
847
- lhs_pf3.z =lhs(lhs_vert + 2, (threadIdx.y/4+k+24));
848
- } else if ((threadIdx.y/4+k+16) < k_size) {
849
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
850
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
851
- lhs_pf0.z =lhs(lhs_vert + 2, (threadIdx.y/4+k));
852
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
853
- lhs_pf1.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+8));
854
- lhs_pf1.z =lhs(lhs_vert + 2, (threadIdx.y/4+k+8));
855
- lhs_pf2.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+16));
856
- lhs_pf2.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+16));
857
- lhs_pf2.z =lhs(lhs_vert + 2, (threadIdx.y/4+k+16));
858
- } else if ((threadIdx.y/4+k+8) < k_size) {
859
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
860
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
861
- lhs_pf0.z =lhs(lhs_vert + 2, (threadIdx.y/4+k));
862
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
863
- lhs_pf1.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+8));
864
- lhs_pf1.z =lhs(lhs_vert + 2, (threadIdx.y/4+k+8));
865
- } else if ((threadIdx.y/4+k) < k_size) {
866
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
867
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
868
- lhs_pf0.z =lhs(lhs_vert + 2, (threadIdx.y/4+k));
869
- }
870
- } else if (lhs_vert + 1 < m_size) {
871
- if ((threadIdx.y/4+k+24) < k_size) {
872
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
873
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
874
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
875
- lhs_pf1.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+8));
876
- lhs_pf2.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+16));
877
- lhs_pf2.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+16));
878
- lhs_pf3.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+24));
879
- lhs_pf3.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+24));
880
- } else if ((threadIdx.y/4+k+16) < k_size) {
881
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
882
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
883
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
884
- lhs_pf1.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+8));
885
- lhs_pf2.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+16));
886
- lhs_pf2.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+16));
887
- } else if ((threadIdx.y/4+k+8) < k_size) {
888
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
889
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
890
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
891
- lhs_pf1.y =lhs(lhs_vert + 1, (threadIdx.y/4+k+8));
892
- } else if ((threadIdx.y/4+k) < k_size) {
893
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
894
- lhs_pf0.y =lhs(lhs_vert + 1, (threadIdx.y/4+k));
895
- }
896
- } else if (lhs_vert < m_size) {
897
- if ((threadIdx.y/4+k+24) < k_size) {
898
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
899
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
900
- lhs_pf2.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+16));
901
- lhs_pf3.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+24));
902
- } else if ((threadIdx.y/4+k+16) < k_size) {
903
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
904
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
905
- lhs_pf2.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+16));
906
- } else if ((threadIdx.y/4+k+8) < k_size) {
907
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
908
- lhs_pf1.x =lhs(lhs_vert + 0, (threadIdx.y/4+k+8));
909
- } else if ((threadIdx.y/4+k) < k_size) {
910
- lhs_pf0.x =lhs(lhs_vert + 0, (threadIdx.y/4+k));
911
- }
912
- }
913
- }
914
- __syncthreads();
915
- Index rhs_vert = k+threadIdx.x*4;
916
- Index rhs_horiz0 = threadIdx.y*2+base_n;
917
- Index rhs_horiz1 = threadIdx.y*2+1+base_n;
918
- if (!CHECK_RHS_BOUNDARY) {
919
- if ((rhs_vert + 3) < k_size) {
920
- // just CHECK_RHS_BOUNDARY
921
- rhs_pf0 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz0);
922
- rhs_pf1 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz1);
923
- } else if (rhs_vert + 2 < k_size) {
924
- // just CHECK_RHS_BOUNDARY
925
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
926
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
927
- rhs_pf0.z = rhs(rhs_vert + 2, rhs_horiz0);
928
- rhs_pf1.x = rhs(rhs_vert, rhs_horiz1);
929
- rhs_pf1.y = rhs(rhs_vert + 1, rhs_horiz1);
930
- rhs_pf1.z = rhs(rhs_vert + 2, rhs_horiz1);
931
- } else if (rhs_vert + 1 < k_size) {
932
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
933
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
934
- rhs_pf1.x = rhs(rhs_vert, rhs_horiz1);
935
- rhs_pf1.y = rhs(rhs_vert + 1, rhs_horiz1);
936
- } else if (rhs_vert < k_size) {
937
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
938
- rhs_pf1.x = rhs(rhs_vert, rhs_horiz1);
939
- }
940
- } else {
941
- if (rhs_horiz1 < n_size) {
942
- if ((rhs_vert + 3) < k_size) {
943
- // just CHECK_RHS_BOUNDARY
944
- rhs_pf0 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz0);
945
- rhs_pf1 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz1);
946
- } else if (rhs_vert + 2 < k_size) {
947
- // just CHECK_RHS_BOUNDARY
948
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
949
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
950
- rhs_pf0.z = rhs(rhs_vert + 2, rhs_horiz0);
951
- rhs_pf1.x = rhs(rhs_vert, rhs_horiz1);
952
- rhs_pf1.y = rhs(rhs_vert + 1, rhs_horiz1);
953
- rhs_pf1.z = rhs(rhs_vert + 2, rhs_horiz1);
954
- } else if (k+threadIdx.x*4 + 1 < k_size) {
955
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
956
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
957
- rhs_pf1.x = rhs(rhs_vert, rhs_horiz1);
958
- rhs_pf1.y = rhs(rhs_vert + 1, rhs_horiz1);
959
- } else if (k+threadIdx.x*4 < k_size) {
960
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
961
- rhs_pf1.x = rhs(rhs_vert, rhs_horiz1);
962
- }
963
- } else if (rhs_horiz0 < n_size) {
964
- if ((rhs_vert + 3) < k_size) {
965
- // just CHECK_RHS_BOUNDARY
966
- rhs_pf0 = rhs.template loadPacket<float4,Unaligned>(rhs_vert, rhs_horiz0);
967
- } else if ((rhs_vert + 2) < k_size) {
968
- // just CHECK_RHS_BOUNDARY
969
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
970
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
971
- rhs_pf0.z = rhs(rhs_vert + 2, rhs_horiz0);
972
- } else if ((rhs_vert + 1) < k_size) {
973
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
974
- rhs_pf0.y = rhs(rhs_vert + 1, rhs_horiz0);
975
- } else if (rhs_vert < k_size) {
976
- rhs_pf0.x = rhs(rhs_vert, rhs_horiz0);
977
- }
978
- }
979
- }
980
- __syncthreads();
981
- // Loaded. Do computation
982
- // Row 0 -> times (0, 4, 8, .. 28) for features 0, 1.
983
- // Row 1 -> times (0, 4, 8, .. 28) for features 2, 3.
984
- // ..
985
- // Row 31 -> times (0, 4, 8, .. 28) for features 62, 63
986
- rhs_shmem2[threadIdx.y][threadIdx.x] = make_float2(rhs_pf0.x, rhs_pf1.x);
987
- // Row 32 -> times (1, 5, 9, .. 29) for features 0, 1.
988
- // Row 33 -> times (1, 5, 9, .. 29) for features 2, 3.
989
- // ..
990
- rhs_shmem2[threadIdx.y+32][threadIdx.x] = make_float2(rhs_pf0.y, rhs_pf1.y);
991
- // Row 64 -> times (2, 6, 10, .. 30) for features 0, 1.
992
- // Row 65 -> times (2, 6, 10, .. 30) for features 2, 3.
993
- rhs_shmem2[threadIdx.y+64][threadIdx.x] = make_float2(rhs_pf0.z, rhs_pf1.z);
994
- // Row 96 -> times (3, 7, 11, .. 31) for features 0, 1.
995
- // Row 97 -> times (3, 7, 11, .. 31) for features 2, 3.
996
- rhs_shmem2[threadIdx.y+96][threadIdx.x] = make_float2(rhs_pf0.w, rhs_pf1.w);
997
-
998
- // LHS.
999
- // Row 0 (time 0) -> features (0, 1), (4, 5), .. (28, 29), (32, 33), .. (60, 61) .. (124, 125)
1000
- // Row 1 (time 1) -> features (0, 1), (4, 5), .. (28, 29), (32, 33), .. (60, 61) .. (124, 125)
1001
- // ...
1002
- // Row 8 (time 0) -> features (2, 3), (6, 7), .. (30, 31), (34, 35), .. (62, 63) .. (126, 127)
1003
- // Row 15 (time 7) -> features (2, 3), (6, 7), .. (30, 31), (34, 35), .. (62, 63) .. (126, 127)
1004
-
1005
-
1006
- #define add_vals(a_feat1, a_feat2, f1, f2, f3, f4)\
1007
- results[0].x += a_feat1.x * f1.x;\
1008
- results[1].x += a_feat1.x * f1.y;\
1009
- results[2].x += a_feat1.x * f2.x;\
1010
- results[3].x += a_feat1.x * f2.y;\
1011
- results[4].x += a_feat1.x * f3.x;\
1012
- results[5].x += a_feat1.x * f3.y;\
1013
- results[6].x += a_feat1.x * f4.x;\
1014
- results[7].x += a_feat1.x * f4.y;\
1015
- \
1016
- results[0].y += a_feat1.y * f1.x;\
1017
- results[1].y += a_feat1.y * f1.y;\
1018
- results[2].y += a_feat1.y * f2.x;\
1019
- results[3].y += a_feat1.y * f2.y;\
1020
- results[4].y += a_feat1.y * f3.x;\
1021
- results[5].y += a_feat1.y * f3.y;\
1022
- results[6].y += a_feat1.y * f4.x;\
1023
- results[7].y += a_feat1.y * f4.y;\
1024
- \
1025
- results[0].z += a_feat2.x * f1.x;\
1026
- results[1].z += a_feat2.x * f1.y;\
1027
- results[2].z += a_feat2.x * f2.x;\
1028
- results[3].z += a_feat2.x * f2.y;\
1029
- results[4].z += a_feat2.x * f3.x;\
1030
- results[5].z += a_feat2.x * f3.y;\
1031
- results[6].z += a_feat2.x * f4.x;\
1032
- results[7].z += a_feat2.x * f4.y;\
1033
- \
1034
- results[0].w += a_feat2.y * f1.x;\
1035
- results[1].w += a_feat2.y * f1.y;\
1036
- results[2].w += a_feat2.y * f2.x;\
1037
- results[3].w += a_feat2.y * f2.y;\
1038
- results[4].w += a_feat2.y * f3.x;\
1039
- results[5].w += a_feat2.y * f3.y;\
1040
- results[6].w += a_feat2.y * f4.x;\
1041
- results[7].w += a_feat2.y * f4.y;\
1042
-
1043
- lhs_shmem2[threadIdx.y/4][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf0.x, lhs_pf0.y);
1044
- lhs_shmem2[threadIdx.y/4+8][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf1.x, lhs_pf1.y);
1045
- lhs_shmem2[threadIdx.y/4+16][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf2.x, lhs_pf2.y);
1046
- lhs_shmem2[threadIdx.y/4+24][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf3.x, lhs_pf3.y);
1047
-
1048
- lhs_shmem2[threadIdx.y/4 + 32][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf0.z, lhs_pf0.w);
1049
- lhs_shmem2[threadIdx.y/4 + 40][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf1.z, lhs_pf1.w);
1050
- lhs_shmem2[threadIdx.y/4 + 48][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf2.z, lhs_pf2.w);
1051
- lhs_shmem2[threadIdx.y/4 + 56][threadIdx.x+(threadIdx.y%4)*8] = make_float2(lhs_pf3.z, lhs_pf3.w);
1052
-
1053
- __syncthreads();
1054
-
1055
- // Do the multiplies.
1056
- #pragma unroll
1057
- for (int koff = 0; koff < 32; koff ++) {
1058
- float2 a3 = lhs_shmem2[koff][threadIdx.x + (threadIdx.y % 4) * 8];
1059
- float2 a4 = lhs_shmem2[koff + 32][threadIdx.x + (threadIdx.y % 4) * 8];
1060
-
1061
- // first feature is at (threadIdx.y/4) * 8 last is at start + 8.
1062
- int start_feature = (threadIdx.y / 4) * 8;
1063
-
1064
- float2 br1 = rhs_shmem2[start_feature/2 + (koff % 4) * 32][koff/4];
1065
- float2 br2 = rhs_shmem2[start_feature/2 + 1 + (koff % 4) * 32][koff/4];
1066
- float2 br3 = rhs_shmem2[start_feature/2 + 2 + (koff % 4) * 32][koff/4];
1067
- float2 br4 = rhs_shmem2[start_feature/2 + 3 + (koff % 4) * 32][koff/4];
1068
-
1069
- add_vals(a3, a4, br1, br2, br3, br4)
1070
- }
1071
- __syncthreads();
1072
- } // end loop over k
1073
-
1074
- __syncthreads();
1075
- Index horiz_base = (threadIdx.y/4)*8+base_n;
1076
- if (!CHECK_LHS_BOUNDARY && !CHECK_RHS_BOUNDARY) {
1077
- for (int i = 0; i < 8; i++) {
1078
- output(lhs_vert, horiz_base + i) = results[i].x;
1079
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
1080
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
1081
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
1082
- }
1083
- } else if (!CHECK_RHS_BOUNDARY) {
1084
- if (lhs_vert + 3 < m_size) {
1085
- for (int i = 0; i < 8; i++) {
1086
- output(lhs_vert, horiz_base + i) = results[i].x;
1087
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
1088
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
1089
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
1090
- }
1091
- } else if (lhs_vert + 2 < m_size) {
1092
- for (int i = 0; i < 8; i++) {
1093
- output(lhs_vert, horiz_base + i) = results[i].x;
1094
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
1095
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
1096
- }
1097
- } else if (lhs_vert + 1 < m_size) {
1098
- for (int i = 0; i < 8; i++) {
1099
- output(lhs_vert, horiz_base + i) = results[i].x;
1100
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
1101
- }
1102
- } else if (lhs_vert < m_size) {
1103
- for (int i = 0; i < 8; i++) {
1104
- output(lhs_vert, horiz_base + i) = results[i].x;
1105
- }
1106
- }
1107
- } else if (!CHECK_LHS_BOUNDARY) {
1108
- // CHECK BOUNDARY_B
1109
- for (int i = 0; i < 8; i++) {
1110
- if (horiz_base + i < n_size) {
1111
- output(lhs_vert, horiz_base + i) = results[i].x;
1112
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
1113
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
1114
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
1115
- }
1116
- }
1117
- } else {
1118
- // CHECK both boundaries.
1119
- for (int i = 0; i < 8; i++) {
1120
- if (horiz_base + i < n_size) {
1121
- if (lhs_vert < m_size)
1122
- output(lhs_vert, horiz_base + i) = results[i].x;
1123
- if (lhs_vert + 1 < m_size)
1124
- output(lhs_vert + 1, horiz_base + i) = results[i].y;
1125
- if (lhs_vert + 2 < m_size)
1126
- output(lhs_vert + 2, horiz_base + i) = results[i].z;
1127
- if (lhs_vert + 3 < m_size)
1128
- output(lhs_vert + 3, horiz_base + i) = results[i].w;
1129
- }
1130
- }
1131
- }
1132
- }
1133
-
1134
-
1135
- template<typename Index, typename LhsMapper,
1136
- typename RhsMapper, typename OutputMapper>
1137
- __global__ void
1138
- #if defined(EIGEN_HIPCC)
1139
- __launch_bounds__(256, 1)
1140
- #else
1141
- __launch_bounds__(256)
1142
- #endif
1143
- EigenFloatContractionKernel(const LhsMapper lhs, const RhsMapper rhs,
1144
- const OutputMapper output,
1145
- const Index m_size, const Index n_size, const Index k_size) {
1146
- __shared__ float2 lhs_shmem[64*32];
1147
- __shared__ float2 rhs_shmem[128*8];
1148
-
1149
- typedef float2 LHS_MEM[64][32];
1150
- typedef float2 RHS_MEM[128][8];
1151
-
1152
- const Index m_block_idx = blockIdx.x;
1153
- const Index n_block_idx = blockIdx.y;
1154
-
1155
- const Index base_m = 128 * m_block_idx;
1156
- const Index base_n = 64 * n_block_idx;
1157
-
1158
- bool check_rhs = (base_n + 63) >= n_size;
1159
- bool check_lhs128 = (base_m + 127) >= m_size;
1160
-
1161
- if (!check_rhs) {
1162
- if (!check_lhs128) {
1163
- // >= 128 rows left
1164
- EigenFloatContractionKernelInternal<Index, LhsMapper, RhsMapper, OutputMapper, false, false>(
1165
- lhs, rhs, output, *((LHS_MEM *) lhs_shmem), *((RHS_MEM *) rhs_shmem), m_size, n_size, k_size, base_m, base_n);
1166
- } else {
1167
- EigenFloatContractionKernelInternal<Index, LhsMapper, RhsMapper, OutputMapper, true, false>(
1168
- lhs, rhs, output, *((LHS_MEM *) lhs_shmem), *((RHS_MEM *) rhs_shmem), m_size, n_size, k_size, base_m, base_n);
1169
- }
1170
- } else {
1171
- if (!check_lhs128) {
1172
- // >= 128 rows left
1173
- EigenFloatContractionKernelInternal<Index, LhsMapper, RhsMapper, OutputMapper, false, true>(
1174
- lhs, rhs, output, *((LHS_MEM *) lhs_shmem), *((RHS_MEM *) rhs_shmem), m_size, n_size, k_size, base_m, base_n);
1175
- } else {
1176
- EigenFloatContractionKernelInternal<Index, LhsMapper, RhsMapper, OutputMapper, true, true>(
1177
- lhs, rhs, output, *((LHS_MEM *) lhs_shmem), *((RHS_MEM *) rhs_shmem), m_size, n_size, k_size, base_m, base_n);
1178
- }
1179
- }
1180
- }
1181
-
1182
- template<typename Index, typename LhsMapper,
1183
- typename RhsMapper, typename OutputMapper>
1184
- __global__ void
1185
- #if defined(EIGEN_HIPCC)
1186
- __launch_bounds__(256, 1)
1187
- #else
1188
- __launch_bounds__(256)
1189
- #endif
1190
- EigenFloatContractionKernel16x16(const LhsMapper lhs, const RhsMapper rhs,
1191
- const OutputMapper output,
1192
- const Index m_size, const Index n_size, const Index k_size) {
1193
- __shared__ float2 lhs_shmem[32][16];
1194
- __shared__ float2 rhs_shmem[64][8];
1195
-
1196
- const Index m_block_idx = blockIdx.x;
1197
- const Index n_block_idx = blockIdx.y;
1198
-
1199
- const Index base_m = 64 * m_block_idx;
1200
- const Index base_n = 64 * n_block_idx;
1201
-
1202
- if (base_m + 63 < m_size) {
1203
- if (base_n + 63 < n_size) {
1204
- EigenFloatContractionKernelInternal16x16<Index, LhsMapper, RhsMapper, OutputMapper, false, false>(lhs, rhs, output, lhs_shmem, rhs_shmem, m_size, n_size, k_size, base_m, base_n);
1205
- } else {
1206
- EigenFloatContractionKernelInternal16x16<Index, LhsMapper, RhsMapper, OutputMapper, false, true>(lhs, rhs, output, lhs_shmem, rhs_shmem, m_size, n_size, k_size, base_m, base_n);
1207
- }
1208
- } else {
1209
- if (base_n + 63 < n_size) {
1210
- EigenFloatContractionKernelInternal16x16<Index, LhsMapper, RhsMapper, OutputMapper, true, false>(lhs, rhs, output, lhs_shmem, rhs_shmem, m_size, n_size, k_size, base_m, base_n);
1211
- } else {
1212
- EigenFloatContractionKernelInternal16x16<Index, LhsMapper, RhsMapper, OutputMapper, true, true>(lhs, rhs, output, lhs_shmem, rhs_shmem, m_size, n_size, k_size, base_m, base_n);
1213
- }
1214
- }
1215
- }
1216
-
1217
-
1218
- template<typename Indices, typename LeftArgType, typename RightArgType, typename OutputKernelType>
1219
- struct TensorEvaluator<const TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType>, GpuDevice> :
1220
- public TensorContractionEvaluatorBase<TensorEvaluator<const TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType>, GpuDevice> > {
1221
-
1222
- typedef GpuDevice Device;
1223
-
1224
- typedef TensorEvaluator<const TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType>, Device> Self;
1225
- typedef TensorContractionEvaluatorBase<Self> Base;
1226
-
1227
- typedef TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType> XprType;
1228
- typedef typename internal::remove_const<typename XprType::Scalar>::type Scalar;
1229
- typedef typename XprType::Index Index;
1230
- typedef typename XprType::CoeffReturnType CoeffReturnType;
1231
- typedef typename PacketType<CoeffReturnType, GpuDevice>::type PacketReturnType;
1232
-
1233
- enum {
1234
- Layout = TensorEvaluator<LeftArgType, Device>::Layout,
1235
- };
1236
-
1237
- // Most of the code is assuming that both input tensors are ColMajor. If the
1238
- // inputs are RowMajor, we will "cheat" by swapping the LHS and RHS:
1239
- // If we want to compute A * B = C, where A is LHS and B is RHS, the code
1240
- // will pretend B is LHS and A is RHS.
1241
- typedef typename internal::conditional<
1242
- static_cast<int>(Layout) == static_cast<int>(ColMajor), LeftArgType, RightArgType>::type EvalLeftArgType;
1243
- typedef typename internal::conditional<
1244
- static_cast<int>(Layout) == static_cast<int>(ColMajor), RightArgType, LeftArgType>::type EvalRightArgType;
1245
-
1246
- static const int LDims =
1247
- internal::array_size<typename TensorEvaluator<EvalLeftArgType, Device>::Dimensions>::value;
1248
- static const int RDims =
1249
- internal::array_size<typename TensorEvaluator<EvalRightArgType, Device>::Dimensions>::value;
1250
- static const int ContractDims = internal::array_size<Indices>::value;
1251
-
1252
- typedef array<Index, LDims> left_dim_mapper_t;
1253
- typedef array<Index, RDims> right_dim_mapper_t;
1254
-
1255
- typedef array<Index, ContractDims> contract_t;
1256
- typedef array<Index, LDims - ContractDims> left_nocontract_t;
1257
- typedef array<Index, RDims - ContractDims> right_nocontract_t;
1258
-
1259
- static const int NumDims = LDims + RDims - 2 * ContractDims;
1260
-
1261
- typedef DSizes<Index, NumDims> Dimensions;
1262
-
1263
- // typedefs needed in evalTo
1264
- typedef typename internal::remove_const<typename EvalLeftArgType::Scalar>::type LhsScalar;
1265
- typedef typename internal::remove_const<typename EvalRightArgType::Scalar>::type RhsScalar;
1266
-
1267
- typedef TensorEvaluator<EvalLeftArgType, Device> LeftEvaluator;
1268
- typedef TensorEvaluator<EvalRightArgType, Device> RightEvaluator;
1269
-
1270
- typedef typename LeftEvaluator::Dimensions LeftDimensions;
1271
- typedef typename RightEvaluator::Dimensions RightDimensions;
1272
-
1273
- TensorEvaluator(const XprType& op, const Device& device) :
1274
- Base(op, device)
1275
- {
1276
- EIGEN_STATIC_ASSERT( (internal::is_same<OutputKernelType, const NoOpOutputKernel>::value),
1277
- GPU_TENSOR_CONTRACTION_DOES_NOT_SUPPORT_OUTPUT_KERNELS);
1278
- }
1279
-
1280
- // We need to redefine this method to make nvcc happy
1281
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(Scalar* data) {
1282
- this->m_leftImpl.evalSubExprsIfNeeded(NULL);
1283
- this->m_rightImpl.evalSubExprsIfNeeded(NULL);
1284
- if (data) {
1285
- evalTo(data);
1286
- return false;
1287
- } else {
1288
- this->m_result = static_cast<Scalar *>(this->m_device.allocate(this->dimensions().TotalSize() * sizeof(Scalar)));
1289
- evalTo(this->m_result);
1290
- return true;
1291
- }
1292
- }
1293
-
1294
- void evalTo(Scalar* buffer) const {
1295
- if (this->m_lhs_inner_dim_contiguous) {
1296
- if (this->m_rhs_inner_dim_contiguous) {
1297
- if (this->m_rhs_inner_dim_reordered) {
1298
- evalTyped<true, true, true, Unaligned>(buffer);
1299
- }
1300
- else {
1301
- evalTyped<true, true, false, Unaligned>(buffer);
1302
- }
1303
- }
1304
- else {
1305
- if (this->m_rhs_inner_dim_reordered) {
1306
- evalTyped<true, false, true, Unaligned>(buffer);
1307
- }
1308
- else {
1309
- evalTyped<true, false, false, Unaligned>(buffer);
1310
- }
1311
- }
1312
- }
1313
- else {
1314
- if (this->m_rhs_inner_dim_contiguous) {
1315
- if (this->m_rhs_inner_dim_reordered) {
1316
- evalTyped<false, true, true, Unaligned>(buffer);
1317
- }
1318
- else {
1319
- evalTyped<false, true, false, Unaligned>(buffer);
1320
- }
1321
- }
1322
- else {
1323
- if (this->m_rhs_inner_dim_reordered) {
1324
- evalTyped<false, false, true, Unaligned>(buffer);
1325
- }
1326
- else {
1327
- evalTyped<false, false, false, Unaligned>(buffer);
1328
- }
1329
- }
1330
- }
1331
- }
1332
-
1333
- template <typename LhsScalar, typename RhsScalar, typename Index, typename LhsMapper, typename RhsMapper, typename OutputMapper> struct LaunchKernels {
1334
- static void Run(const LhsMapper& lhs, const RhsMapper& rhs, const OutputMapper& output, Index m, Index n, Index k, const GpuDevice& device) {
1335
- const Index m_blocks = (m + 63) / 64;
1336
- const Index n_blocks = (n + 63) / 64;
1337
- const dim3 num_blocks(m_blocks, n_blocks, 1);
1338
- const dim3 block_size(8, 8, 8);
1339
- LAUNCH_GPU_KERNEL((EigenContractionKernel<Scalar, Index, LhsMapper, RhsMapper, OutputMapper>), num_blocks, block_size, 0, device, lhs, rhs, output, m, n, k);
1340
- }
1341
- };
1342
-
1343
- template <typename Index, typename LhsMapper, typename RhsMapper, typename OutputMapper> struct LaunchKernels<float, float, Index, LhsMapper, RhsMapper, OutputMapper> {
1344
- static void Run(const LhsMapper& lhs, const RhsMapper& rhs, const OutputMapper& output, Index m, Index n, Index k, const GpuDevice& device) {
1345
- if (m < 768 || n < 768) {
1346
- const Index m_blocks = (m + 63) / 64;
1347
- const Index n_blocks = (n + 63) / 64;
1348
- const dim3 num_blocks(m_blocks, n_blocks, 1);
1349
- const dim3 block_size(16, 16, 1);
1350
- LAUNCH_GPU_KERNEL((EigenFloatContractionKernel16x16<Index, LhsMapper, RhsMapper, OutputMapper>), num_blocks, block_size, 0, device, lhs, rhs, output, m, n, k);
1351
- } else {
1352
- const Index m_blocks = (m + 127) / 128;
1353
- const Index n_blocks = (n + 63) / 64;
1354
- const dim3 num_blocks(m_blocks, n_blocks, 1);
1355
- const dim3 block_size(8, 32, 1);
1356
- LAUNCH_GPU_KERNEL((EigenFloatContractionKernel<Index, LhsMapper, RhsMapper, OutputMapper>), num_blocks, block_size, 0, device, lhs, rhs, output, m, n, k);
1357
- }
1358
- }
1359
- };
1360
-
1361
- template <bool lhs_inner_dim_contiguous, bool rhs_inner_dim_contiguous, bool rhs_inner_dim_reordered, int Alignment>
1362
- void evalTyped(Scalar* buffer) const {
1363
- // columns in left side, rows in right side
1364
- const Index k = this->m_k_size;
1365
- EIGEN_UNUSED_VARIABLE(k)
1366
-
1367
- // rows in left side
1368
- const Index m = this->m_i_size;
1369
-
1370
- // columns in right side
1371
- const Index n = this->m_j_size;
1372
-
1373
- // zero out the result buffer (which must be of size at least m * n * sizeof(Scalar)
1374
- this->m_device.memset(buffer, 0, m * n * sizeof(Scalar));
1375
-
1376
- typedef internal::TensorContractionInputMapper<LhsScalar, Index, internal::Lhs,
1377
- LeftEvaluator, left_nocontract_t,
1378
- contract_t, 4,
1379
- lhs_inner_dim_contiguous,
1380
- false, Unaligned> LhsMapper;
1381
-
1382
- typedef internal::TensorContractionInputMapper<RhsScalar, Index, internal::Rhs,
1383
- RightEvaluator, right_nocontract_t,
1384
- contract_t, 4,
1385
- rhs_inner_dim_contiguous,
1386
- rhs_inner_dim_reordered, Unaligned> RhsMapper;
1387
-
1388
- typedef internal::blas_data_mapper<Scalar, Index, ColMajor> OutputMapper;
1389
-
1390
-
1391
- // initialize data mappers
1392
- LhsMapper lhs(this->m_leftImpl, this->m_left_nocontract_strides, this->m_i_strides,
1393
- this->m_left_contracting_strides, this->m_k_strides);
1394
-
1395
- RhsMapper rhs(this->m_rightImpl, this->m_right_nocontract_strides, this->m_j_strides,
1396
- this->m_right_contracting_strides, this->m_k_strides);
1397
-
1398
- OutputMapper output(buffer, m);
1399
-
1400
- #if defined(EIGEN_USE_HIP)
1401
- setGpuSharedMemConfig(hipSharedMemBankSizeEightByte);
1402
- #else
1403
- setGpuSharedMemConfig(cudaSharedMemBankSizeEightByte);
1404
- #endif
1405
-
1406
- LaunchKernels<LhsScalar, RhsScalar, Index, LhsMapper, RhsMapper, OutputMapper>::Run(lhs, rhs, output, m, n, k, this->m_device);
1407
- }
1408
- };
1409
-
1410
- } // end namespace Eigen
1411
-
1412
- #endif // EIGEN_USE_GPU and EIGEN_GPUCC
1413
- #endif // EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_GPU_H