sequenzo 0.1.18__cp310-cp310-win_amd64.whl → 0.1.19__cp310-cp310-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (396) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +107 -5
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
  12. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  13. sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
  14. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  15. sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
  16. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  17. sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
  18. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  19. sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
  20. sequenzo/multidomain/cat.py +0 -53
  21. sequenzo/multidomain/idcd.py +0 -1
  22. sequenzo/openmp_setup.py +233 -0
  23. sequenzo/visualization/plot_transition_matrix.py +21 -22
  24. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/METADATA +43 -10
  25. sequenzo-0.1.19.dist-info/RECORD +272 -0
  26. sequenzo/dissimilarity_measures/setup.py +0 -35
  27. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  28. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  29. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  169. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  170. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  171. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  172. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  173. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  174. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  175. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  176. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  177. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  178. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  179. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  180. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  181. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  182. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  183. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  184. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  185. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  186. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  187. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  188. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  189. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  190. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  191. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  192. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  197. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  198. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  199. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  200. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  201. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  202. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  203. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  206. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  207. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  208. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  209. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  210. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  211. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  212. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  213. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
  214. sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
  215. sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
  216. sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
  217. sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
  218. sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
  219. sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
  220. sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
  221. sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
  222. sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
  223. sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
  224. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  225. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  226. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  393. sequenzo-0.1.18.dist-info/RECORD +0 -638
  394. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  395. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  396. {sequenzo-0.1.18.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,575 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_MAPPER_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_MAPPER_H
12
-
13
- namespace Eigen {
14
-
15
- namespace internal {
16
-
17
- enum {
18
- Rhs = 0,
19
- Lhs = 1
20
- };
21
-
22
- /*
23
- * Implementation of the Eigen blas_data_mapper class for tensors.
24
- */
25
- /// The make pointer class is used by sycl in order to build the mapper class on the device. For other platform the default make pointer is used which
26
- /// is scalar * for CoeffLoader.
27
- template <typename Tensor, bool HasRawAccess, template <class> class MakePointer_ = MakePointer>
28
- struct CoeffLoader;
29
-
30
- template <typename Scalar, typename Index, int side, typename Tensor,
31
- typename nocontract_t, typename contract_t, int packet_size,
32
- bool inner_dim_contiguous, bool inner_dim_reordered, int Alignment,
33
- template <class> class MakePointer_ = MakePointer>
34
- class BaseTensorContractionMapper;
35
-
36
- template <typename Tensor, bool HasRawAccess, template <class> class MakePointer_>
37
- struct CoeffLoader {
38
- enum {
39
- DirectOffsets = false
40
- };
41
-
42
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE CoeffLoader(const Tensor& tensor) : m_tensor(tensor) { }
43
-
44
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void offsetBuffer(typename Tensor::Index) {
45
- eigen_assert(false && "unsupported");
46
- }
47
-
48
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE const typename MakePointer_<const typename Tensor::Scalar>::Type
49
- data() const {
50
- eigen_assert(false && "unsupported");
51
- return NULL;
52
- }
53
-
54
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE typename Tensor::Scalar coeff(typename Tensor::Index index) const { return m_tensor.coeff(index); }
55
-
56
- template<int LoadMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
57
- typename Tensor::PacketReturnType packet(typename Tensor::Index index) const
58
- {
59
- return m_tensor.template packet<LoadMode>(index);
60
- }
61
-
62
- #ifdef EIGEN_USE_SYCL
63
- // The placeholder accessors require to be bound to a command group handler for SYCL
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
65
- m_tensor.bind(cgh);
66
- }
67
- #endif
68
-
69
- private:
70
- const Tensor m_tensor;
71
- };
72
-
73
- template <typename Tensor, template <class> class MakePointer_>
74
- struct CoeffLoader<Tensor, true, MakePointer_> {
75
- enum {
76
- DirectOffsets = true
77
- };
78
-
79
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE CoeffLoader(const Tensor& tensor) : m_data(tensor.data()) {}
80
-
81
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void offsetBuffer(typename Tensor::Index offset) {
82
- m_data += offset;
83
- }
84
-
85
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE const typename MakePointer_<const typename Tensor::Scalar>::Type
86
- data() const {
87
- return m_data;
88
- }
89
-
90
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE typename Tensor::Scalar coeff(typename Tensor::Index index) const { return loadConstant(m_data+index); }
91
-
92
- template<int LoadMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
93
- typename Tensor::PacketReturnType packet(typename Tensor::Index index) const
94
- {
95
- return internal::ploadt_ro<typename Tensor::PacketReturnType, LoadMode>(m_data + index);
96
- }
97
-
98
- #ifdef EIGEN_USE_SYCL
99
- // The placeholder accessors require to be bound to a command group handler for SYCL
100
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
101
- m_data.bind(cgh);
102
- }
103
- #endif
104
- private:
105
- typedef typename Tensor::Scalar Scalar;
106
-
107
- typename MakePointer_<const Scalar>::Type m_data;
108
- };
109
-
110
- template<typename Scalar, typename Index, int side,
111
- typename Tensor,
112
- typename nocontract_t, typename contract_t,
113
- int packet_size, bool inner_dim_contiguous, int Alignment, template <class> class MakePointer_ = MakePointer>
114
- class SimpleTensorContractionMapper {
115
- public:
116
- EIGEN_DEVICE_FUNC
117
- SimpleTensorContractionMapper(const Tensor& tensor,
118
- const nocontract_t& nocontract_strides,
119
- const nocontract_t& ij_strides,
120
- const contract_t& contract_strides,
121
- const contract_t& k_strides) :
122
- m_tensor(tensor),
123
- m_nocontract_strides(nocontract_strides),
124
- m_ij_strides(ij_strides),
125
- m_contract_strides(contract_strides),
126
- m_k_strides(k_strides) { }
127
-
128
- enum {
129
- DirectOffsets = CoeffLoader<Tensor, Tensor::RawAccess, MakePointer_>::DirectOffsets
130
- };
131
-
132
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void offsetBuffer(typename Tensor::Index offset) {
133
- m_tensor.offsetBuffer(offset);
134
- }
135
-
136
- EIGEN_DEVICE_FUNC
137
- EIGEN_STRONG_INLINE void prefetch(Index /*i*/) { }
138
-
139
- EIGEN_DEVICE_FUNC
140
- EIGEN_STRONG_INLINE Scalar operator()(Index row) const {
141
- // column major assumption
142
- return operator()(row, 0);
143
- }
144
-
145
- EIGEN_DEVICE_FUNC
146
- EIGEN_STRONG_INLINE Scalar operator()(Index row, Index col) const {
147
- return m_tensor.coeff(computeIndex(row, col));
148
- }
149
-
150
- EIGEN_DEVICE_FUNC
151
- EIGEN_STRONG_INLINE Index computeIndex(Index row, Index col) const {
152
- const bool left = (side == Lhs);
153
- EIGEN_UNUSED_VARIABLE(left); // annoying bug in g++8.1: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=85963
154
- Index nocontract_val = left ? row : col;
155
- Index linidx = 0;
156
- EIGEN_UNROLL_LOOP
157
- for (int i = static_cast<int>(array_size<nocontract_t>::value) - 1; i > 0; i--) {
158
- const Index idx = nocontract_val / m_ij_strides[i];
159
- linidx += idx * m_nocontract_strides[i];
160
- nocontract_val -= idx * m_ij_strides[i];
161
- }
162
- if (array_size<typename Tensor::Dimensions>::value > array_size<contract_t>::value) {
163
- if (side == Lhs && inner_dim_contiguous) {
164
- eigen_assert(m_nocontract_strides[0] == 1);
165
- linidx += nocontract_val;
166
- } else {
167
- linidx += nocontract_val * m_nocontract_strides[0];
168
- }
169
- }
170
-
171
- Index contract_val = left ? col : row;
172
- if(array_size<contract_t>::value > 0) {
173
- EIGEN_UNROLL_LOOP
174
- for (int i = static_cast<int>(array_size<contract_t>::value) - 1; i > 0; i--) {
175
- const Index idx = contract_val / m_k_strides[i];
176
- linidx += idx * m_contract_strides[i];
177
- contract_val -= idx * m_k_strides[i];
178
- }
179
-
180
- if (side == Rhs && inner_dim_contiguous) {
181
- eigen_assert(m_contract_strides[0] == 1);
182
- linidx += contract_val;
183
- } else {
184
- linidx += contract_val * m_contract_strides[0];
185
- }
186
- }
187
-
188
- return linidx;
189
- }
190
-
191
- EIGEN_DEVICE_FUNC
192
- EIGEN_STRONG_INLINE IndexPair<Index> computeIndexPair(Index row, Index col, const Index distance) const {
193
- const bool left = (side == Lhs);
194
- EIGEN_UNUSED_VARIABLE(left); // annoying bug in g++8.1: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=85963
195
- Index nocontract_val[2] = {left ? row : col, left ? row + distance : col};
196
- Index linidx[2] = {0, 0};
197
- if (array_size<typename Tensor::Dimensions>::value > array_size<contract_t>::value) {
198
- EIGEN_UNROLL_LOOP
199
- for (int i = static_cast<int>(array_size<nocontract_t>::value) - 1; i > 0; i--) {
200
- const Index idx0 = nocontract_val[0] / m_ij_strides[i];
201
- const Index idx1 = nocontract_val[1] / m_ij_strides[i];
202
- linidx[0] += idx0 * m_nocontract_strides[i];
203
- linidx[1] += idx1 * m_nocontract_strides[i];
204
- nocontract_val[0] -= idx0 * m_ij_strides[i];
205
- nocontract_val[1] -= idx1 * m_ij_strides[i];
206
- }
207
- if (side == Lhs && inner_dim_contiguous) {
208
- eigen_assert(m_nocontract_strides[0] == 1);
209
- linidx[0] += nocontract_val[0];
210
- linidx[1] += nocontract_val[1];
211
- } else {
212
- linidx[0] += nocontract_val[0] * m_nocontract_strides[0];
213
- linidx[1] += nocontract_val[1] * m_nocontract_strides[0];
214
- }
215
- }
216
-
217
- Index contract_val[2] = {left ? col : row, left ? col : row + distance};
218
- if (array_size<contract_t>::value> 0) {
219
- EIGEN_UNROLL_LOOP
220
- for (int i = static_cast<int>(array_size<contract_t>::value) - 1; i > 0; i--) {
221
- const Index idx0 = contract_val[0] / m_k_strides[i];
222
- const Index idx1 = contract_val[1] / m_k_strides[i];
223
- linidx[0] += idx0 * m_contract_strides[i];
224
- linidx[1] += idx1 * m_contract_strides[i];
225
- contract_val[0] -= idx0 * m_k_strides[i];
226
- contract_val[1] -= idx1 * m_k_strides[i];
227
- }
228
-
229
- if (side == Rhs && inner_dim_contiguous) {
230
- eigen_assert(m_contract_strides[0] == 1);
231
- linidx[0] += contract_val[0];
232
- linidx[1] += contract_val[1];
233
- } else {
234
- linidx[0] += contract_val[0] * m_contract_strides[0];
235
- linidx[1] += contract_val[1] * m_contract_strides[0];
236
- }
237
- }
238
- return IndexPair<Index>(linidx[0], linidx[1]);
239
- }
240
-
241
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Index firstAligned(Index size) const {
242
- // Only claim alignment when we can compute the actual stride (ie when we're
243
- // dealing with the lhs with inner_dim_contiguous. This is because the
244
- // matrix-vector product relies on the stride when dealing with aligned inputs.
245
- return (Alignment == Aligned) && (side == Lhs) && inner_dim_contiguous ? 0 : size;
246
- }
247
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Index stride() const {
248
- return ((side == Lhs) && inner_dim_contiguous && array_size<contract_t>::value > 0) ? m_contract_strides[0] : 1;
249
- }
250
-
251
- #ifdef EIGEN_USE_SYCL
252
- // The placeholder accessors require to be bound to a command group handler for SYCL
253
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
254
- m_tensor.bind(cgh);
255
- }
256
- #endif
257
-
258
- const CoeffLoader<Tensor, Tensor::RawAccess, MakePointer_>& tensor() const {
259
- return m_tensor;
260
- }
261
-
262
- const nocontract_t& nocontract_strides() const {
263
- return m_nocontract_strides;
264
- }
265
- const nocontract_t& ij_strides() const { return m_ij_strides; }
266
- const contract_t& contract_strides() const { return m_contract_strides; }
267
- const contract_t& k_strides() const { return m_k_strides; }
268
-
269
- protected:
270
- CoeffLoader<Tensor, Tensor::RawAccess, MakePointer_> m_tensor;
271
- const nocontract_t m_nocontract_strides;
272
- const nocontract_t m_ij_strides;
273
- const contract_t m_contract_strides;
274
- const contract_t m_k_strides;
275
- };
276
-
277
- template<typename Scalar, typename Index, int side,
278
- typename Tensor,
279
- typename nocontract_t, typename contract_t,
280
- int packet_size, bool inner_dim_contiguous,
281
- bool inner_dim_reordered, int Alignment, template <class> class MakePointer_>
282
- class BaseTensorContractionMapper : public SimpleTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, Alignment, MakePointer_>
283
- {
284
- public:
285
- typedef SimpleTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, Alignment, MakePointer_> ParentMapper;
286
-
287
- EIGEN_DEVICE_FUNC
288
- BaseTensorContractionMapper(const Tensor& tensor,
289
- const nocontract_t& nocontract_strides,
290
- const nocontract_t& ij_strides,
291
- const contract_t& contract_strides,
292
- const contract_t& k_strides) :
293
- ParentMapper(tensor, nocontract_strides, ij_strides, contract_strides, k_strides) { }
294
-
295
- template <typename PacketT,int AlignmentType>
296
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
297
- typename internal::enable_if<internal::unpacket_traits<PacketT>::size==packet_size,PacketT>::type
298
- load(Index i, Index j) const
299
- {
300
- // whole method makes column major assumption
301
-
302
- // don't need to add offsets for now (because operator handles that)
303
- // current code assumes packet size must be a multiple of 2
304
- EIGEN_STATIC_ASSERT(packet_size % 2 == 0, YOU_MADE_A_PROGRAMMING_MISTAKE);
305
-
306
- if (Tensor::PacketAccess && inner_dim_contiguous && !inner_dim_reordered) {
307
- const Index index = this->computeIndex(i, j);
308
- eigen_assert(this->computeIndex(i+packet_size-1, j) == index + packet_size-1);
309
- return this->m_tensor.template packet<AlignmentType>(index);
310
- }
311
-
312
- const IndexPair<Index> indexPair = this->computeIndexPair(i, j, packet_size - 1);
313
- const Index first = indexPair.first;
314
- const Index lastIdx = indexPair.second;
315
-
316
- // We can always do optimized packet reads from left hand side right now, because
317
- // the vertical matrix dimension on the left hand side is never contracting.
318
- // On the right hand side we need to check if the contracting dimensions may have
319
- // been shuffled first.
320
- if (Tensor::PacketAccess &&
321
- (side == Lhs || internal::array_size<contract_t>::value <= 1 || !inner_dim_reordered) &&
322
- (lastIdx - first) == (packet_size - 1)) {
323
-
324
- return this->m_tensor.template packet<AlignmentType>(first);
325
- }
326
-
327
- EIGEN_ALIGN_MAX Scalar data[packet_size];
328
-
329
- data[0] = this->m_tensor.coeff(first);
330
- EIGEN_UNROLL_LOOP
331
- for (Index k = 1; k < packet_size - 1; k += 2) {
332
- const IndexPair<Index> internal_pair = this->computeIndexPair(i + k, j, 1);
333
- data[k] = this->m_tensor.coeff(internal_pair.first);
334
- data[k + 1] = this->m_tensor.coeff(internal_pair.second);
335
- }
336
- data[packet_size - 1] = this->m_tensor.coeff(lastIdx);
337
-
338
- return pload<PacketT>(data);
339
- }
340
-
341
- template <typename PacketT,int AlignmentType>
342
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
343
- typename internal::enable_if<internal::unpacket_traits<PacketT>::size!=packet_size,PacketT>::type
344
- load(Index i, Index j) const
345
- {
346
- const Index requested_packet_size = internal::unpacket_traits<PacketT>::size;
347
- EIGEN_ALIGN_MAX Scalar data[requested_packet_size];
348
-
349
- const IndexPair<Index> indexPair = this->computeIndexPair(i, j, requested_packet_size - 1);
350
- const Index first = indexPair.first;
351
- const Index lastIdx = indexPair.second;
352
-
353
- data[0] = this->m_tensor.coeff(first);
354
- for (Index k = 1; k < requested_packet_size - 1; k += 2) {
355
- const IndexPair<Index> internal_pair = this->computeIndexPair(i + k, j, 1);
356
- data[k] = this->m_tensor.coeff(internal_pair.first);
357
- data[k + 1] = this->m_tensor.coeff(internal_pair.second);
358
- }
359
- data[requested_packet_size - 1] = this->m_tensor.coeff(lastIdx);
360
-
361
- return pload<PacketT>(data);
362
- }
363
-
364
- template <typename PacketT,int AlignmentType>
365
- EIGEN_DEVICE_FUNC
366
- EIGEN_STRONG_INLINE PacketT loadPacket(Index i, Index j) const {
367
- return this->load<PacketT,AlignmentType>(i,j);
368
- }
369
- };
370
-
371
-
372
- template<typename Scalar, typename Index, int side,
373
- typename Tensor,
374
- typename nocontract_t, typename contract_t,
375
- bool inner_dim_contiguous,
376
- bool inner_dim_reordered, int Alignment, template <class> class MakePointer_>
377
- class BaseTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, 1, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_>
378
- : public SimpleTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, 1, inner_dim_contiguous, Alignment, MakePointer_>
379
- {
380
- public:
381
- typedef SimpleTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, 1, inner_dim_contiguous, Alignment, MakePointer_> ParentMapper;
382
-
383
- EIGEN_DEVICE_FUNC
384
- BaseTensorContractionMapper(const Tensor& tensor,
385
- const nocontract_t& nocontract_strides,
386
- const nocontract_t& ij_strides,
387
- const contract_t& contract_strides,
388
- const contract_t& k_strides) :
389
- ParentMapper(tensor, nocontract_strides, ij_strides, contract_strides, k_strides) { }
390
-
391
- template <typename PacketT,int> EIGEN_DEVICE_FUNC
392
- EIGEN_STRONG_INLINE PacketT loadPacket(Index i, Index j) const {
393
- EIGEN_ALIGN_MAX Scalar data[1];
394
- data[0] = this->m_tensor.coeff(this->computeIndex(i, j));
395
- return pload<PacketT>(data);
396
- }
397
- template <typename PacketT,int> EIGEN_DEVICE_FUNC
398
- EIGEN_STRONG_INLINE PacketT load(Index i, Index j) const {
399
- EIGEN_ALIGN_MAX Scalar data[1];
400
- data[0] = this->m_tensor.coeff(this->computeIndex(i, j));
401
- return pload<PacketT>(data);
402
- }
403
- };
404
-
405
-
406
- template<typename Scalar, typename Index, int side,
407
- typename Tensor,
408
- typename nocontract_t, typename contract_t,
409
- int packet_size,
410
- bool inner_dim_contiguous, bool inner_dim_reordered, int Alignment, template <class> class MakePointer_=MakePointer>
411
- class TensorContractionSubMapper {
412
- public:
413
-
414
- typedef BaseTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_> ParentMapper;
415
- typedef TensorContractionSubMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_> Self;
416
- typedef Self LinearMapper;
417
-
418
- enum {
419
- // We can use direct offsets iff the parent mapper supports then and we can compute the strides.
420
- // TODO: we should also enable direct offsets for the Rhs case.
421
- UseDirectOffsets = ParentMapper::DirectOffsets && (side == Lhs) && inner_dim_contiguous && (array_size<contract_t>::value > 0)
422
- };
423
-
424
- EIGEN_DEVICE_FUNC TensorContractionSubMapper(const ParentMapper& base_mapper, Index vert_offset, Index horiz_offset)
425
- : m_base_mapper(base_mapper), m_vert_offset(vert_offset), m_horiz_offset(horiz_offset) {
426
- // Bake the offsets into the buffer used by the base mapper whenever possible. This avoids the need to recompute
427
- // this offset every time we attempt to access a coefficient.
428
- if (UseDirectOffsets) {
429
- Index stride = m_base_mapper.stride();
430
- m_base_mapper.offsetBuffer(vert_offset + horiz_offset * stride);
431
- }
432
- }
433
-
434
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Scalar operator()(Index i) const {
435
- if (UseDirectOffsets) {
436
- return m_base_mapper(i, 0);
437
- }
438
- return m_base_mapper(i + m_vert_offset, m_horiz_offset);
439
- }
440
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Scalar operator()(Index i, Index j) const {
441
- if (UseDirectOffsets) {
442
- return m_base_mapper(i, j);
443
- }
444
- return m_base_mapper(i + m_vert_offset, j + m_horiz_offset);
445
- }
446
-
447
- template <typename PacketT>
448
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketT loadPacket(Index i) const {
449
- if (UseDirectOffsets) {
450
- return m_base_mapper.template loadPacket<PacketT,Alignment>(i, 0);
451
- }
452
- return m_base_mapper.template loadPacket<PacketT,Alignment>(i + m_vert_offset, m_horiz_offset);
453
- }
454
-
455
- template <typename PacketT>
456
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketT loadPacket(Index i, Index j) const {
457
- if (UseDirectOffsets) {
458
- return m_base_mapper.template loadPacket<PacketT,Alignment>(i, j);
459
- }
460
- return m_base_mapper.template loadPacket<PacketT,Alignment>(i + m_vert_offset, j + m_horiz_offset);
461
- }
462
-
463
- template <typename PacketT, int AlignmentType>
464
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketT loadPacket(Index i, Index j) const {
465
- if (UseDirectOffsets) {
466
- return m_base_mapper.template load<PacketT,AlignmentType>(i, j);
467
- }
468
- return m_base_mapper.template loadPacket<PacketT,AlignmentType>(i + m_vert_offset, j + m_horiz_offset);
469
- }
470
-
471
- template <typename PacketT>
472
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void storePacket(Index i, const PacketT& p) const {
473
- if (UseDirectOffsets) {
474
- m_base_mapper.storePacket(i, 0, p);
475
- }
476
- m_base_mapper.storePacket(i + m_vert_offset, m_horiz_offset, p);
477
- }
478
-
479
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE LinearMapper getLinearMapper(Index i, Index j) const {
480
- if (UseDirectOffsets) {
481
- return LinearMapper(m_base_mapper, i, j);
482
- }
483
- return LinearMapper(m_base_mapper, i + m_vert_offset, j + m_horiz_offset);
484
- }
485
-
486
- template <typename PacketT, int AlignmentType>
487
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketT load(Index i) const {
488
- EIGEN_STATIC_ASSERT((internal::is_same<PacketT, PacketT>::value), YOU_MADE_A_PROGRAMMING_MISTAKE);
489
- const int ActualAlignment = (AlignmentType == Aligned) && (Alignment == Aligned) ? Aligned : Unaligned;
490
- if (UseDirectOffsets) {
491
- return m_base_mapper.template loadPacket<PacketT,ActualAlignment>(i, 0);
492
- }
493
- return m_base_mapper.template loadPacket<PacketT,ActualAlignment>(i + m_vert_offset, m_horiz_offset);
494
- }
495
-
496
- template <typename PacketT>
497
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool aligned(Index) const {
498
- return false;
499
- }
500
-
501
- #ifdef EIGEN_USE_SYCL
502
- // The placeholder accessors require to be bound to a command group handler for SYCL
503
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
504
- m_base_mapper.bind(cgh);
505
- }
506
- #endif
507
-
508
- const ParentMapper& base_mapper() const { return m_base_mapper; }
509
- Index vert_offset() const { return m_vert_offset; }
510
- Index horiz_offset() const { return m_horiz_offset; }
511
-
512
- private:
513
- ParentMapper m_base_mapper;
514
- const Index m_vert_offset;
515
- const Index m_horiz_offset;
516
- };
517
-
518
-
519
- template<typename Scalar_, typename Index, int side,
520
- typename Tensor,
521
- typename nocontract_t, typename contract_t,
522
- int packet_size,
523
- bool inner_dim_contiguous, bool inner_dim_reordered, int Alignment, template <class> class MakePointer_=MakePointer>
524
- class TensorContractionInputMapper
525
- : public BaseTensorContractionMapper<Scalar_, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_> {
526
-
527
- public:
528
- typedef Scalar_ Scalar;
529
- typedef BaseTensorContractionMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_> Base;
530
- typedef TensorContractionSubMapper<Scalar, Index, side, Tensor, nocontract_t, contract_t, packet_size, inner_dim_contiguous, inner_dim_reordered, Alignment, MakePointer_> SubMapper;
531
- typedef SubMapper VectorMapper;
532
-
533
- EIGEN_DEVICE_FUNC TensorContractionInputMapper(const Tensor& tensor,
534
- const nocontract_t& nocontract_strides,
535
- const nocontract_t& ij_strides,
536
- const contract_t& contract_strides,
537
- const contract_t& k_strides)
538
- : Base(tensor, nocontract_strides, ij_strides, contract_strides, k_strides) { }
539
-
540
- EIGEN_DEVICE_FUNC
541
- EIGEN_STRONG_INLINE SubMapper getSubMapper(Index i, Index j) const {
542
- return SubMapper(*this, i, j);
543
- }
544
-
545
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE VectorMapper getVectorMapper(Index i, Index j) const {
546
- return VectorMapper(*this, i, j);
547
- }
548
-
549
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE const CoeffLoader<Tensor, Tensor::RawAccess, MakePointer_>& get_tensor() const {
550
- return Base::m_tensor;
551
- }
552
- };
553
-
554
-
555
- template <typename T> struct TensorContractionInputMapperTrait;
556
-
557
- template<typename Scalar_, typename Index_, int side_,
558
- typename Tensor_,
559
- typename nocontract_t_, typename contract_t_,
560
- int packet_size_,
561
- bool inner_dim_contiguous_, bool inner_dim_reordered_, int Alignment_, template <class> class MakePointer_>
562
- struct TensorContractionInputMapperTrait<TensorContractionInputMapper<Scalar_, Index_, side_, Tensor_,
563
- nocontract_t_, contract_t_, packet_size_, inner_dim_contiguous_,
564
- inner_dim_reordered_, Alignment_, MakePointer_> > {
565
-
566
- typedef Tensor_ XprType;
567
- static const bool inner_dim_contiguous = inner_dim_contiguous_;
568
- static const bool inner_dim_reordered = inner_dim_reordered_;
569
- };
570
-
571
-
572
- } // end namespace internal
573
- } // end namespace Eigen
574
-
575
- #endif // EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_MAPPER_H