scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +19 -8
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +2 -1
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +6 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +6 -12
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +4 -9
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +5 -1
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
- scitex/io/_load_modules/_pdf.py +38 -29
- scitex/io/_load_modules/_sqlite3.py +1 -0
- scitex/io/_load_modules/_txt.py +2 -0
- scitex/io/_load_modules/_xml.py +9 -9
- scitex/io/_load_modules/_zarr.py +12 -10
- scitex/io/_metadata.py +76 -37
- scitex/io/_qr_utils.py +18 -13
- scitex/io/_save.py +220 -63
- scitex/io/_save_modules/__init__.py +7 -2
- scitex/io/_save_modules/_bibtex.py +66 -61
- scitex/io/_save_modules/_canvas.py +5 -6
- scitex/io/_save_modules/_catboost.py +2 -2
- scitex/io/_save_modules/_csv.py +4 -4
- scitex/io/_save_modules/_excel.py +5 -9
- scitex/io/_save_modules/_hdf5.py +9 -21
- scitex/io/_save_modules/_html.py +5 -5
- scitex/io/_save_modules/_image.py +105 -8
- scitex/io/_save_modules/_joblib.py +2 -2
- scitex/io/_save_modules/_json.py +51 -6
- scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
- scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
- scitex/io/_save_modules/_matlab.py +2 -2
- scitex/io/_save_modules/_numpy.py +6 -8
- scitex/io/_save_modules/_pickle.py +4 -4
- scitex/io/_save_modules/_plotly.py +3 -3
- scitex/io/_save_modules/_tex.py +23 -25
- scitex/io/_save_modules/_text.py +2 -2
- scitex/io/_save_modules/_yaml.py +9 -9
- scitex/io/_save_modules/_zarr.py +15 -15
- scitex/io/utils/__init__.py +2 -1
- scitex/io/utils/h5_to_zarr.py +173 -155
- scitex/linalg/__init__.py +1 -1
- scitex/linalg/_geometric_median.py +4 -3
- scitex/logging/_Tee.py +5 -7
- scitex/logging/__init__.py +18 -19
- scitex/logging/_config.py +4 -1
- scitex/logging/_context.py +6 -5
- scitex/logging/_formatters.py +2 -3
- scitex/logging/_handlers.py +19 -20
- scitex/logging/_levels.py +9 -17
- scitex/logging/_logger.py +74 -15
- scitex/logging/_print_capture.py +17 -17
- scitex/nn/_BNet.py +1 -3
- scitex/nn/_Filters.py +6 -2
- scitex/nn/_ModulationIndex.py +3 -1
- scitex/nn/_PAC.py +3 -2
- scitex/nn/_PSD.py +0 -1
- scitex/nn/__init__.py +16 -3
- scitex/path/_clean.py +10 -8
- scitex/path/_find.py +1 -1
- scitex/path/_get_spath.py +1 -2
- scitex/path/_mk_spath.py +1 -1
- scitex/path/_symlink.py +5 -10
- scitex/pd/__init__.py +4 -1
- scitex/pd/_force_df.py +24 -24
- scitex/pd/_get_unique.py +1 -0
- scitex/pd/_merge_columns.py +1 -1
- scitex/pd/_round.py +11 -7
- scitex/pd/_to_xy.py +0 -1
- scitex/plt/REQUESTS.md +191 -0
- scitex/plt/__init__.py +185 -87
- scitex/plt/_subplots/_AxesWrapper.py +22 -6
- scitex/plt/_subplots/_AxisWrapper.py +100 -39
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
- scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
- scitex/plt/_subplots/_FigWrapper.py +93 -60
- scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
- scitex/plt/_subplots/__init__.py +10 -0
- scitex/plt/_subplots/_export_as_csv.py +89 -47
- scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
- scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
- scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
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- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/vis/__init__.py +0 -0
- scitex/vis/backend/__init__.py +3 -3
- scitex/vis/backend/{export.py → _export.py} +1 -1
- scitex/vis/backend/{parser.py → _parser.py} +1 -3
- scitex/vis/backend/{render.py → _render.py} +1 -1
- scitex/vis/canvas.py +15 -3
- scitex/vis/editor/__init__.py +0 -0
- scitex/vis/editor/_dearpygui_editor.py +450 -304
- scitex/vis/editor/_defaults.py +114 -123
- scitex/vis/editor/_edit.py +38 -26
- scitex/vis/editor/_flask_editor.py +8 -8
- scitex/vis/editor/_mpl_editor.py +63 -48
- scitex/vis/editor/_qt_editor.py +210 -159
- scitex/vis/editor/_tkinter_editor.py +146 -89
- scitex/vis/editor/flask_editor/__init__.py +10 -10
- scitex/vis/editor/flask_editor/_bbox.py +529 -0
- scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
- scitex/vis/editor/flask_editor/_plotter.py +567 -0
- scitex/vis/editor/flask_editor/_renderer.py +393 -0
- scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
- scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
- scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
- scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
- scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
- scitex/vis/io/__init__.py +5 -5
- scitex/vis/io/{canvas.py → _canvas.py} +8 -4
- scitex/vis/io/{data.py → _data.py} +13 -9
- scitex/vis/io/{directory.py → _directory.py} +7 -4
- scitex/vis/io/{export.py → _export.py} +15 -12
- scitex/vis/io/{load.py → _load.py} +1 -1
- scitex/vis/io/{panel.py → _panel.py} +21 -13
- scitex/vis/io/{save.py → _save.py} +0 -0
- scitex/vis/model/__init__.py +7 -7
- scitex/vis/model/{annotations.py → _annotations.py} +2 -4
- scitex/vis/model/{axes.py → _axes.py} +1 -1
- scitex/vis/model/{figure.py → _figure.py} +0 -0
- scitex/vis/model/{guides.py → _guides.py} +1 -1
- scitex/vis/model/{plot.py → _plot.py} +2 -4
- scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
- scitex/vis/model/{styles.py → _styles.py} +0 -0
- scitex/vis/utils/__init__.py +2 -2
- scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
- scitex/vis/utils/{validate.py → _validate.py} +3 -9
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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# File: ./src/scitex/vis/editor/flask_editor/bbox.py
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"""Bounding box extraction for figure elements."""
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from typing import Dict, Any
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def extract_bboxes(fig, ax, renderer, img_width: int, img_height: int) -> Dict[str, Any]:
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"""Extract bounding boxes for all figure elements."""
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from matplotlib.transforms import Bbox
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# Get figure tight bbox in inches
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fig_bbox = fig.get_tightbbox(renderer)
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tight_x0 = fig_bbox.x0
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tight_y0 = fig_bbox.y0
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tight_width = fig_bbox.width
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tight_height = fig_bbox.height
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# bbox_inches='tight' adds pad_inches (default 0.1) around the tight bbox
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pad_inches = 0.1
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saved_width_inches = tight_width + 2 * pad_inches
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saved_height_inches = tight_height + 2 * pad_inches
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# Scale factors for converting inches to pixels
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scale_x = img_width / saved_width_inches
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scale_y = img_height / saved_height_inches
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bboxes = {}
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def get_element_bbox(element, name):
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"""Get element bbox in image pixel coordinates."""
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try:
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bbox = element.get_window_extent(renderer)
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elem_x0_inches = bbox.x0 / fig.dpi
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elem_x1_inches = bbox.x1 / fig.dpi
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elem_y0_inches = bbox.y0 / fig.dpi
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elem_y1_inches = bbox.y1 / fig.dpi
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x0_rel = elem_x0_inches - tight_x0 + pad_inches
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x1_rel = elem_x1_inches - tight_x0 + pad_inches
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y0_rel = saved_height_inches - (elem_y1_inches - tight_y0 + pad_inches)
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y1_rel = saved_height_inches - (elem_y0_inches - tight_y0 + pad_inches)
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bboxes[name] = {
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'x0': max(0, int(x0_rel * scale_x)),
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'y0': max(0, int(y0_rel * scale_y)),
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'x1': min(img_width, int(x1_rel * scale_x)),
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'y1': min(img_height, int(y1_rel * scale_y)),
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'label': name.replace('_', ' ').title()
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}
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except Exception as e:
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print(f"Error getting bbox for {name}: {e}")
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def bbox_to_img_coords(bbox):
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"""Convert matplotlib bbox to image pixel coordinates."""
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x0_inches = bbox.x0 / fig.dpi
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y0_inches = bbox.y0 / fig.dpi
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x1_inches = bbox.x1 / fig.dpi
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y1_inches = bbox.y1 / fig.dpi
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x0_rel = x0_inches - tight_x0 + pad_inches
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y0_rel = y0_inches - tight_y0 + pad_inches
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x1_rel = x1_inches - tight_x0 + pad_inches
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y1_rel = y1_inches - tight_y0 + pad_inches
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return {
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'x0': int(x0_rel * scale_x),
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'y0': int((saved_height_inches - y1_rel) * scale_y),
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'x1': int(x1_rel * scale_x),
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'y1': int((saved_height_inches - y0_rel) * scale_y),
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}
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# Get bboxes for title, labels
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if ax.title.get_text():
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get_element_bbox(ax.title, 'title')
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if ax.xaxis.label.get_text():
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get_element_bbox(ax.xaxis.label, 'xlabel')
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if ax.yaxis.label.get_text():
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get_element_bbox(ax.yaxis.label, 'ylabel')
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# Get axis bboxes
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_extract_axis_bboxes(ax, renderer, bboxes, bbox_to_img_coords, Bbox)
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# Get legend bbox
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legend = ax.get_legend()
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if legend:
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get_element_bbox(legend, 'legend')
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# Get trace (line) bboxes
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_extract_trace_bboxes(ax, fig, renderer, bboxes, get_element_bbox,
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tight_x0, tight_y0, saved_height_inches, scale_x, scale_y, pad_inches)
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return bboxes
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def _extract_axis_bboxes(ax, renderer, bboxes, bbox_to_img_coords, Bbox):
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"""Extract bboxes for X and Y axis elements."""
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try:
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# X-axis: combine spine and tick labels into one bbox
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x_axis_bboxes = []
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for ticklabel in ax.xaxis.get_ticklabels():
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if ticklabel.get_visible():
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try:
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tb = ticklabel.get_window_extent(renderer)
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if tb.width > 0:
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x_axis_bboxes.append(tb)
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except Exception:
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pass
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for tick in ax.xaxis.get_major_ticks():
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if tick.tick1line.get_visible():
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try:
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tb = tick.tick1line.get_window_extent(renderer)
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if tb.width > 0 or tb.height > 0:
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x_axis_bboxes.append(tb)
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except Exception:
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pass
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spine_bbox = ax.spines['bottom'].get_window_extent(renderer)
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if spine_bbox.width > 0:
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if x_axis_bboxes:
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tick_union = Bbox.union(x_axis_bboxes)
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constrained_spine = Bbox.from_extents(
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tick_union.x0, spine_bbox.y0,
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tick_union.x1, spine_bbox.y1
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)
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x_axis_bboxes.append(constrained_spine)
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else:
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x_axis_bboxes.append(spine_bbox)
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if x_axis_bboxes:
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combined = Bbox.union(x_axis_bboxes)
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bboxes['xaxis_ticks'] = bbox_to_img_coords(combined)
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bboxes['xaxis_ticks']['label'] = 'X Spine & Ticks'
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# Y-axis: combine spine and tick labels into one bbox
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y_axis_bboxes = []
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for ticklabel in ax.yaxis.get_ticklabels():
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if ticklabel.get_visible():
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try:
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tb = ticklabel.get_window_extent(renderer)
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if tb.width > 0:
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y_axis_bboxes.append(tb)
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except Exception:
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pass
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for tick in ax.yaxis.get_major_ticks():
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if tick.tick1line.get_visible():
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try:
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tb = tick.tick1line.get_window_extent(renderer)
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if tb.width > 0 or tb.height > 0:
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y_axis_bboxes.append(tb)
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except Exception:
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pass
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spine_bbox = ax.spines['left'].get_window_extent(renderer)
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if spine_bbox.height > 0:
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if y_axis_bboxes:
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tick_union = Bbox.union(y_axis_bboxes)
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constrained_spine = Bbox.from_extents(
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spine_bbox.x0, tick_union.y0,
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spine_bbox.x1, tick_union.y1
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)
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y_axis_bboxes.append(constrained_spine)
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else:
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y_axis_bboxes.append(spine_bbox)
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if y_axis_bboxes:
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combined = Bbox.union(y_axis_bboxes)
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padded = Bbox.from_extents(
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combined.x0 - 10,
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combined.y0 - 5,
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combined.x1 + 5,
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combined.y1 + 5
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)
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bboxes['yaxis_ticks'] = bbox_to_img_coords(padded)
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bboxes['yaxis_ticks']['label'] = 'Y Spine & Ticks'
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except Exception as e:
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print(f"Error getting axis bboxes: {e}")
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def _extract_trace_bboxes(ax, fig, renderer, bboxes, get_element_bbox,
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tight_x0, tight_y0, saved_height_inches, scale_x, scale_y, pad_inches):
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"""Extract bboxes for trace (line) elements with proximity detection points."""
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for idx, line in enumerate(ax.get_lines()):
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try:
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label = line.get_label()
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if label.startswith('_'):
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continue
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get_element_bbox(line, f'trace_{idx}')
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if f'trace_{idx}' in bboxes:
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bboxes[f'trace_{idx}']['label'] = label or f'Trace {idx}'
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bboxes[f'trace_{idx}']['trace_idx'] = idx
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# Get line data points in pixel coordinates for proximity detection
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xdata, ydata = line.get_xdata(), line.get_ydata()
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if len(xdata) > 0:
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transform = ax.transData
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points_display = transform.transform(list(zip(xdata, ydata)))
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points_img = []
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for px, py in points_display:
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px_inches = px / fig.dpi
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py_inches = py / fig.dpi
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x_rel = px_inches - tight_x0 + pad_inches
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y_rel = saved_height_inches - (py_inches - tight_y0 + pad_inches)
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x_img = int(x_rel * scale_x)
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y_img = int(y_rel * scale_y)
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points_img.append([x_img, y_img])
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# Downsample points if too many
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if len(points_img) > 100:
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step = len(points_img) // 100
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points_img = points_img[::step]
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-
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211
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bboxes[f'trace_{idx}']['points'] = points_img
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except Exception as e:
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print(f"Error getting trace bbox: {e}")
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# EOF
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@@ -1,130 +0,0 @@
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1
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#!/usr/bin/env python3
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2
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# -*- coding: utf-8 -*-
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3
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# File: ./src/scitex/vis/editor/flask_editor/plotter.py
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4
|
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"""CSV plotting functionality for Flask editor."""
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5
|
-
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6
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from typing import Dict, Any, Optional
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7
|
-
import pandas as pd
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8
|
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9
|
-
|
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10
|
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def plot_from_csv(ax, csv_data: Optional[pd.DataFrame], overrides: Dict[str, Any], linewidth: float = 1.0):
|
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11
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"""Reconstruct plot from CSV data using trace info from overrides.
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13
|
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Args:
|
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14
|
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ax: Matplotlib axes object
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15
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csv_data: DataFrame containing CSV data
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16
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overrides: Dictionary with override settings including traces
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17
|
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linewidth: Default line width in points
|
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18
|
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"""
|
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19
|
-
if csv_data is None or not isinstance(csv_data, pd.DataFrame):
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20
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return
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|
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22
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df = csv_data
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|
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o = overrides
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24
|
-
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25
|
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# Get legend settings from overrides
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|
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legend_fontsize = o.get('legend_fontsize', 6)
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|
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legend_visible = o.get('legend_visible', True)
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28
|
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legend_frameon = o.get('legend_frameon', False)
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29
|
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legend_loc = o.get('legend_loc', 'best')
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|
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legend_x = o.get('legend_x', 0.5)
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31
|
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legend_y = o.get('legend_y', 0.5)
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32
|
-
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33
|
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# Get traces from overrides (which may have been edited by user)
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|
34
|
-
traces = o.get('traces', [])
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|
35
|
-
|
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36
|
-
if traces:
|
|
37
|
-
_plot_with_traces(ax, df, traces, linewidth, legend_fontsize, legend_visible,
|
|
38
|
-
legend_frameon, legend_loc, legend_x, legend_y)
|
|
39
|
-
else:
|
|
40
|
-
_plot_fallback(ax, df, linewidth, legend_fontsize, legend_visible,
|
|
41
|
-
legend_frameon, legend_loc, legend_x, legend_y)
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
def _plot_with_traces(ax, df, traces, linewidth, legend_fontsize, legend_visible,
|
|
45
|
-
legend_frameon, legend_loc, legend_x, legend_y):
|
|
46
|
-
"""Plot using trace information from overrides."""
|
|
47
|
-
for trace in traces:
|
|
48
|
-
csv_cols = trace.get('csv_columns', {})
|
|
49
|
-
x_col = csv_cols.get('x')
|
|
50
|
-
y_col = csv_cols.get('y')
|
|
51
|
-
|
|
52
|
-
if x_col in df.columns and y_col in df.columns:
|
|
53
|
-
ax.plot(
|
|
54
|
-
df[x_col],
|
|
55
|
-
df[y_col],
|
|
56
|
-
label=trace.get('label', trace.get('id', '')),
|
|
57
|
-
color=trace.get('color'),
|
|
58
|
-
linestyle=trace.get('linestyle', '-'),
|
|
59
|
-
linewidth=trace.get('linewidth', linewidth),
|
|
60
|
-
marker=trace.get('marker', None),
|
|
61
|
-
markersize=trace.get('markersize', 6),
|
|
62
|
-
)
|
|
63
|
-
|
|
64
|
-
# Add legend if there are labeled traces
|
|
65
|
-
if legend_visible and any(t.get('label') for t in traces):
|
|
66
|
-
_add_legend(ax, legend_fontsize, legend_frameon, legend_loc, legend_x, legend_y)
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
def _plot_fallback(ax, df, linewidth, legend_fontsize, legend_visible,
|
|
70
|
-
legend_frameon, legend_loc, legend_x, legend_y):
|
|
71
|
-
"""Fallback plotting when no trace info available - smart parsing of column names."""
|
|
72
|
-
cols = df.columns.tolist()
|
|
73
|
-
|
|
74
|
-
# Group columns by trace ID
|
|
75
|
-
trace_groups = {}
|
|
76
|
-
for col in cols:
|
|
77
|
-
if col.endswith('_x'):
|
|
78
|
-
trace_id = col[:-2] # Remove '_x'
|
|
79
|
-
y_col = trace_id + '_y'
|
|
80
|
-
if y_col in cols:
|
|
81
|
-
# Extract label from column name (e.g., ax_00_sine_plot -> sine)
|
|
82
|
-
parts = trace_id.split('_')
|
|
83
|
-
label = parts[2] if len(parts) > 2 else trace_id
|
|
84
|
-
trace_groups[trace_id] = {
|
|
85
|
-
'x_col': col,
|
|
86
|
-
'y_col': y_col,
|
|
87
|
-
'label': label,
|
|
88
|
-
}
|
|
89
|
-
|
|
90
|
-
if trace_groups:
|
|
91
|
-
for trace_id, info in trace_groups.items():
|
|
92
|
-
ax.plot(
|
|
93
|
-
df[info['x_col']],
|
|
94
|
-
df[info['y_col']],
|
|
95
|
-
label=info['label'],
|
|
96
|
-
linewidth=linewidth,
|
|
97
|
-
)
|
|
98
|
-
if legend_visible:
|
|
99
|
-
_add_legend(ax, legend_fontsize, legend_frameon, legend_loc, legend_x, legend_y)
|
|
100
|
-
|
|
101
|
-
elif len(cols) >= 2:
|
|
102
|
-
# Last resort: assume first column is x, rest are y
|
|
103
|
-
x_col = cols[0]
|
|
104
|
-
for y_col in cols[1:]:
|
|
105
|
-
try:
|
|
106
|
-
ax.plot(df[x_col], df[y_col], label=str(y_col), linewidth=linewidth)
|
|
107
|
-
except Exception:
|
|
108
|
-
pass
|
|
109
|
-
if len(cols) > 2 and legend_visible:
|
|
110
|
-
_add_legend(ax, legend_fontsize, legend_frameon, legend_loc, legend_x, legend_y)
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
def _add_legend(ax, fontsize, frameon, loc, x, y):
|
|
114
|
-
"""Add legend to axes with specified settings."""
|
|
115
|
-
if loc == 'custom':
|
|
116
|
-
ax.legend(
|
|
117
|
-
fontsize=fontsize,
|
|
118
|
-
frameon=frameon,
|
|
119
|
-
loc='upper left',
|
|
120
|
-
bbox_to_anchor=(x, y),
|
|
121
|
-
)
|
|
122
|
-
else:
|
|
123
|
-
ax.legend(
|
|
124
|
-
fontsize=fontsize,
|
|
125
|
-
frameon=frameon,
|
|
126
|
-
loc=loc,
|
|
127
|
-
)
|
|
128
|
-
|
|
129
|
-
|
|
130
|
-
# EOF
|
|
@@ -1,184 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env python3
|
|
2
|
-
# -*- coding: utf-8 -*-
|
|
3
|
-
# File: ./src/scitex/vis/editor/flask_editor/renderer.py
|
|
4
|
-
"""Figure rendering for Flask editor."""
|
|
5
|
-
|
|
6
|
-
from typing import Dict, Any, Tuple
|
|
7
|
-
import base64
|
|
8
|
-
import io
|
|
9
|
-
|
|
10
|
-
import matplotlib
|
|
11
|
-
matplotlib.use('Agg')
|
|
12
|
-
import matplotlib.pyplot as plt
|
|
13
|
-
from matplotlib.ticker import MaxNLocator
|
|
14
|
-
from PIL import Image
|
|
15
|
-
|
|
16
|
-
from .plotter import plot_from_csv
|
|
17
|
-
from .bbox import extract_bboxes
|
|
18
|
-
|
|
19
|
-
# mm to pt conversion factor
|
|
20
|
-
MM_TO_PT = 2.83465
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
def render_preview_with_bboxes(csv_data, overrides: Dict[str, Any], axis_fontsize: int = 7
|
|
24
|
-
) -> Tuple[str, Dict[str, Any], Dict[str, int]]:
|
|
25
|
-
"""Render figure and return base64 PNG along with element bounding boxes.
|
|
26
|
-
|
|
27
|
-
Args:
|
|
28
|
-
csv_data: DataFrame containing CSV data
|
|
29
|
-
overrides: Dictionary with override settings
|
|
30
|
-
axis_fontsize: Default font size for axis labels
|
|
31
|
-
|
|
32
|
-
Returns:
|
|
33
|
-
tuple: (base64_image_data, bboxes_dict, image_size)
|
|
34
|
-
"""
|
|
35
|
-
o = overrides
|
|
36
|
-
|
|
37
|
-
# Dimensions
|
|
38
|
-
dpi = o.get('dpi', 300)
|
|
39
|
-
fig_size = o.get('fig_size', [3.15, 2.68])
|
|
40
|
-
|
|
41
|
-
# Font sizes
|
|
42
|
-
axis_fontsize = o.get('axis_fontsize', 7)
|
|
43
|
-
tick_fontsize = o.get('tick_fontsize', 7)
|
|
44
|
-
title_fontsize = o.get('title_fontsize', 8)
|
|
45
|
-
|
|
46
|
-
# Line/axis thickness
|
|
47
|
-
linewidth_pt = o.get('linewidth', 0.57)
|
|
48
|
-
axis_width_pt = o.get('axis_width', 0.2) * MM_TO_PT
|
|
49
|
-
tick_length_pt = o.get('tick_length', 0.8) * MM_TO_PT
|
|
50
|
-
tick_width_pt = o.get('tick_width', 0.2) * MM_TO_PT
|
|
51
|
-
tick_direction = o.get('tick_direction', 'out')
|
|
52
|
-
x_n_ticks = o.get('x_n_ticks', o.get('n_ticks', 4))
|
|
53
|
-
y_n_ticks = o.get('y_n_ticks', o.get('n_ticks', 4))
|
|
54
|
-
hide_x_ticks = o.get('hide_x_ticks', False)
|
|
55
|
-
hide_y_ticks = o.get('hide_y_ticks', False)
|
|
56
|
-
|
|
57
|
-
transparent = o.get('transparent', True)
|
|
58
|
-
|
|
59
|
-
# Create figure
|
|
60
|
-
fig, ax = plt.subplots(figsize=fig_size, dpi=dpi)
|
|
61
|
-
_apply_background(fig, ax, o, transparent)
|
|
62
|
-
|
|
63
|
-
# Plot from CSV data
|
|
64
|
-
if csv_data is not None:
|
|
65
|
-
plot_from_csv(ax, csv_data, overrides, linewidth=linewidth_pt)
|
|
66
|
-
else:
|
|
67
|
-
ax.text(0.5, 0.5, "No plot data available\n(CSV not found)",
|
|
68
|
-
ha='center', va='center', transform=ax.transAxes,
|
|
69
|
-
fontsize=axis_fontsize)
|
|
70
|
-
|
|
71
|
-
# Apply labels
|
|
72
|
-
_apply_labels(ax, o, title_fontsize, axis_fontsize)
|
|
73
|
-
|
|
74
|
-
# Tick styling
|
|
75
|
-
_apply_tick_styling(ax, tick_fontsize, tick_length_pt, tick_width_pt, tick_direction,
|
|
76
|
-
x_n_ticks, y_n_ticks, hide_x_ticks, hide_y_ticks)
|
|
77
|
-
|
|
78
|
-
# Apply grid, limits, spines
|
|
79
|
-
_apply_style(ax, o, axis_width_pt)
|
|
80
|
-
|
|
81
|
-
# Apply annotations
|
|
82
|
-
_apply_annotations(ax, o, axis_fontsize)
|
|
83
|
-
|
|
84
|
-
fig.tight_layout()
|
|
85
|
-
|
|
86
|
-
# Get element bounding boxes BEFORE saving (need renderer)
|
|
87
|
-
fig.canvas.draw()
|
|
88
|
-
renderer = fig.canvas.get_renderer()
|
|
89
|
-
|
|
90
|
-
# Save to buffer first to get actual image size
|
|
91
|
-
buf = io.BytesIO()
|
|
92
|
-
fig.savefig(buf, format='png', dpi=dpi, bbox_inches='tight', transparent=transparent)
|
|
93
|
-
buf.seek(0)
|
|
94
|
-
|
|
95
|
-
# Get actual saved image dimensions
|
|
96
|
-
img = Image.open(buf)
|
|
97
|
-
img_width, img_height = img.size
|
|
98
|
-
buf.seek(0)
|
|
99
|
-
|
|
100
|
-
# Get bboxes
|
|
101
|
-
bboxes = extract_bboxes(fig, ax, renderer, img_width, img_height)
|
|
102
|
-
|
|
103
|
-
img_data = base64.b64encode(buf.read()).decode('utf-8')
|
|
104
|
-
plt.close(fig)
|
|
105
|
-
|
|
106
|
-
return img_data, bboxes, {'width': img_width, 'height': img_height}
|
|
107
|
-
|
|
108
|
-
|
|
109
|
-
def _apply_background(fig, ax, o, transparent):
|
|
110
|
-
"""Apply background settings to figure."""
|
|
111
|
-
if transparent:
|
|
112
|
-
fig.patch.set_facecolor('none')
|
|
113
|
-
ax.patch.set_facecolor('none')
|
|
114
|
-
elif o.get('facecolor'):
|
|
115
|
-
fig.patch.set_facecolor(o['facecolor'])
|
|
116
|
-
ax.patch.set_facecolor(o['facecolor'])
|
|
117
|
-
|
|
118
|
-
|
|
119
|
-
def _apply_labels(ax, o, title_fontsize, axis_fontsize):
|
|
120
|
-
"""Apply title and axis labels."""
|
|
121
|
-
if o.get('title'):
|
|
122
|
-
ax.set_title(o['title'], fontsize=title_fontsize)
|
|
123
|
-
if o.get('xlabel'):
|
|
124
|
-
ax.set_xlabel(o['xlabel'], fontsize=axis_fontsize)
|
|
125
|
-
if o.get('ylabel'):
|
|
126
|
-
ax.set_ylabel(o['ylabel'], fontsize=axis_fontsize)
|
|
127
|
-
|
|
128
|
-
|
|
129
|
-
def _apply_tick_styling(ax, tick_fontsize, tick_length_pt, tick_width_pt, tick_direction,
|
|
130
|
-
x_n_ticks, y_n_ticks, hide_x_ticks, hide_y_ticks):
|
|
131
|
-
"""Apply tick styling to axes."""
|
|
132
|
-
ax.tick_params(
|
|
133
|
-
axis='both',
|
|
134
|
-
labelsize=tick_fontsize,
|
|
135
|
-
length=tick_length_pt,
|
|
136
|
-
width=tick_width_pt,
|
|
137
|
-
direction=tick_direction,
|
|
138
|
-
)
|
|
139
|
-
|
|
140
|
-
if hide_x_ticks:
|
|
141
|
-
ax.xaxis.set_ticks([])
|
|
142
|
-
ax.xaxis.set_ticklabels([])
|
|
143
|
-
else:
|
|
144
|
-
ax.xaxis.set_major_locator(MaxNLocator(nbins=x_n_ticks))
|
|
145
|
-
if hide_y_ticks:
|
|
146
|
-
ax.yaxis.set_ticks([])
|
|
147
|
-
ax.yaxis.set_ticklabels([])
|
|
148
|
-
else:
|
|
149
|
-
ax.yaxis.set_major_locator(MaxNLocator(nbins=y_n_ticks))
|
|
150
|
-
|
|
151
|
-
|
|
152
|
-
def _apply_style(ax, o, axis_width_pt):
|
|
153
|
-
"""Apply grid, axis limits, and spine settings."""
|
|
154
|
-
if o.get('grid'):
|
|
155
|
-
ax.grid(True, linewidth=axis_width_pt, alpha=0.3)
|
|
156
|
-
|
|
157
|
-
if o.get('xlim'):
|
|
158
|
-
ax.set_xlim(o['xlim'])
|
|
159
|
-
if o.get('ylim'):
|
|
160
|
-
ax.set_ylim(o['ylim'])
|
|
161
|
-
|
|
162
|
-
if o.get('hide_top_spine', True):
|
|
163
|
-
ax.spines['top'].set_visible(False)
|
|
164
|
-
if o.get('hide_right_spine', True):
|
|
165
|
-
ax.spines['right'].set_visible(False)
|
|
166
|
-
|
|
167
|
-
for spine in ax.spines.values():
|
|
168
|
-
spine.set_linewidth(axis_width_pt)
|
|
169
|
-
|
|
170
|
-
|
|
171
|
-
def _apply_annotations(ax, o, axis_fontsize):
|
|
172
|
-
"""Apply text annotations to figure."""
|
|
173
|
-
for annot in o.get('annotations', []):
|
|
174
|
-
if annot.get('type') == 'text':
|
|
175
|
-
ax.text(
|
|
176
|
-
annot.get('x', 0.5),
|
|
177
|
-
annot.get('y', 0.5),
|
|
178
|
-
annot.get('text', ''),
|
|
179
|
-
transform=ax.transAxes,
|
|
180
|
-
fontsize=annot.get('fontsize', axis_fontsize),
|
|
181
|
-
)
|
|
182
|
-
|
|
183
|
-
|
|
184
|
-
# EOF
|