scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +19 -8
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +2 -1
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +6 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +6 -12
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +4 -9
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +5 -1
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
- scitex/io/_load_modules/_pdf.py +38 -29
- scitex/io/_load_modules/_sqlite3.py +1 -0
- scitex/io/_load_modules/_txt.py +2 -0
- scitex/io/_load_modules/_xml.py +9 -9
- scitex/io/_load_modules/_zarr.py +12 -10
- scitex/io/_metadata.py +76 -37
- scitex/io/_qr_utils.py +18 -13
- scitex/io/_save.py +220 -63
- scitex/io/_save_modules/__init__.py +7 -2
- scitex/io/_save_modules/_bibtex.py +66 -61
- scitex/io/_save_modules/_canvas.py +5 -6
- scitex/io/_save_modules/_catboost.py +2 -2
- scitex/io/_save_modules/_csv.py +4 -4
- scitex/io/_save_modules/_excel.py +5 -9
- scitex/io/_save_modules/_hdf5.py +9 -21
- scitex/io/_save_modules/_html.py +5 -5
- scitex/io/_save_modules/_image.py +105 -8
- scitex/io/_save_modules/_joblib.py +2 -2
- scitex/io/_save_modules/_json.py +51 -6
- scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
- scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
- scitex/io/_save_modules/_matlab.py +2 -2
- scitex/io/_save_modules/_numpy.py +6 -8
- scitex/io/_save_modules/_pickle.py +4 -4
- scitex/io/_save_modules/_plotly.py +3 -3
- scitex/io/_save_modules/_tex.py +23 -25
- scitex/io/_save_modules/_text.py +2 -2
- scitex/io/_save_modules/_yaml.py +9 -9
- scitex/io/_save_modules/_zarr.py +15 -15
- scitex/io/utils/__init__.py +2 -1
- scitex/io/utils/h5_to_zarr.py +173 -155
- scitex/linalg/__init__.py +1 -1
- scitex/linalg/_geometric_median.py +4 -3
- scitex/logging/_Tee.py +5 -7
- scitex/logging/__init__.py +18 -19
- scitex/logging/_config.py +4 -1
- scitex/logging/_context.py +6 -5
- scitex/logging/_formatters.py +2 -3
- scitex/logging/_handlers.py +19 -20
- scitex/logging/_levels.py +9 -17
- scitex/logging/_logger.py +74 -15
- scitex/logging/_print_capture.py +17 -17
- scitex/nn/_BNet.py +1 -3
- scitex/nn/_Filters.py +6 -2
- scitex/nn/_ModulationIndex.py +3 -1
- scitex/nn/_PAC.py +3 -2
- scitex/nn/_PSD.py +0 -1
- scitex/nn/__init__.py +16 -3
- scitex/path/_clean.py +10 -8
- scitex/path/_find.py +1 -1
- scitex/path/_get_spath.py +1 -2
- scitex/path/_mk_spath.py +1 -1
- scitex/path/_symlink.py +5 -10
- scitex/pd/__init__.py +4 -1
- scitex/pd/_force_df.py +24 -24
- scitex/pd/_get_unique.py +1 -0
- scitex/pd/_merge_columns.py +1 -1
- scitex/pd/_round.py +11 -7
- scitex/pd/_to_xy.py +0 -1
- scitex/plt/REQUESTS.md +191 -0
- scitex/plt/__init__.py +185 -87
- scitex/plt/_subplots/_AxesWrapper.py +22 -6
- scitex/plt/_subplots/_AxisWrapper.py +100 -39
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
- scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
- scitex/plt/_subplots/_FigWrapper.py +93 -60
- scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
- scitex/plt/_subplots/__init__.py +10 -0
- scitex/plt/_subplots/_export_as_csv.py +89 -47
- scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
- scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
- scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
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- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/vis/__init__.py +0 -0
- scitex/vis/backend/__init__.py +3 -3
- scitex/vis/backend/{export.py → _export.py} +1 -1
- scitex/vis/backend/{parser.py → _parser.py} +1 -3
- scitex/vis/backend/{render.py → _render.py} +1 -1
- scitex/vis/canvas.py +15 -3
- scitex/vis/editor/__init__.py +0 -0
- scitex/vis/editor/_dearpygui_editor.py +450 -304
- scitex/vis/editor/_defaults.py +114 -123
- scitex/vis/editor/_edit.py +38 -26
- scitex/vis/editor/_flask_editor.py +8 -8
- scitex/vis/editor/_mpl_editor.py +63 -48
- scitex/vis/editor/_qt_editor.py +210 -159
- scitex/vis/editor/_tkinter_editor.py +146 -89
- scitex/vis/editor/flask_editor/__init__.py +10 -10
- scitex/vis/editor/flask_editor/_bbox.py +529 -0
- scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
- scitex/vis/editor/flask_editor/_plotter.py +567 -0
- scitex/vis/editor/flask_editor/_renderer.py +393 -0
- scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
- scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
- scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
- scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
- scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
- scitex/vis/io/__init__.py +5 -5
- scitex/vis/io/{canvas.py → _canvas.py} +8 -4
- scitex/vis/io/{data.py → _data.py} +13 -9
- scitex/vis/io/{directory.py → _directory.py} +7 -4
- scitex/vis/io/{export.py → _export.py} +15 -12
- scitex/vis/io/{load.py → _load.py} +1 -1
- scitex/vis/io/{panel.py → _panel.py} +21 -13
- scitex/vis/io/{save.py → _save.py} +0 -0
- scitex/vis/model/__init__.py +7 -7
- scitex/vis/model/{annotations.py → _annotations.py} +2 -4
- scitex/vis/model/{axes.py → _axes.py} +1 -1
- scitex/vis/model/{figure.py → _figure.py} +0 -0
- scitex/vis/model/{guides.py → _guides.py} +1 -1
- scitex/vis/model/{plot.py → _plot.py} +2 -4
- scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
- scitex/vis/model/{styles.py → _styles.py} +0 -0
- scitex/vis/utils/__init__.py +2 -2
- scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
- scitex/vis/utils/{validate.py → _validate.py} +3 -9
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
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def create_from_email(cls, email: str, **kwargs) -> Optional[BaseSSOAutomator]:
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async def test_automator():
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# automator = UniversityOfMelbourneSSOAutomator()
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automator = SSOAutomator(
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email=os.getenv("SCITEX_SCHOLAR_SSO_EMAIL")
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automator = SSOAutomator(email=os.getenv("SCITEX_SCHOLAR_SSO_EMAIL"))
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browser = await p.chromium.launch(headless=False)
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from playwright.async_api import Page, TimeoutError
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# from scitex.scholar.browser import BrowserUtils
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from scitex.browser.interaction import
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from scitex.browser.interaction import (
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click_with_fallbacks_async,
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fill_with_fallbacks_async,
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)
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from scitex.scholar.config import ScholarConfig
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from .BaseSSOAutomator import BaseSSOAutomator
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@@ -76,9 +80,7 @@ class UniversityOfMelbourneSSOAutomator(BaseSSOAutomator):
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username_success = await self._handle_username_step_async(page)
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if not username_success:
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# Try generic login as fallback
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self.logger.info(
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"Trying generic login form detection as fallback"
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)
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self.logger.info("Trying generic login form detection as fallback")
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username_success = await self._handle_generic_login_async(page)
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if not username_success:
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return False
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@@ -189,9 +191,7 @@ class UniversityOfMelbourneSSOAutomator(BaseSSOAutomator):
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self.logger.info("Filled generic username field")
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# Find any password field
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password_elements = await page.query_selector_all(
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'input[type="password"]'
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)
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password_elements = await page.query_selector_all('input[type="password"]')
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if password_elements:
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await page.evaluate(
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'(args) => { args.element.value = args.value; args.element.dispatchEvent(new Event("input", { bubbles: true })); }',
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"""Handle Duo 2FA using proven working patterns."""
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try:
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# Quick check for Duo auth elements
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duo_elements = await page.query_selector_all(
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".authenticator-verify-list"
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)
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duo_elements = await page.query_selector_all(".authenticator-verify-list")
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if not duo_elements:
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try:
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if push_buttons:
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await push_buttons[0].click()
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self.logger.info(
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"Push notification requested - check your device"
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)
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self.logger.info("Push notification requested - check your device")
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# Send notification to user - USER INTERVENTION REQUIRED
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await self.notify_user_async(
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)
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if auth_buttons:
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await auth_buttons[0].click()
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self.logger.info(
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"Alternative authentication method selected"
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self.logger.info("Alternative authentication method selected")
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# Send notification for alternative auth - USER INTERVENTION REQUIRED
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await self.notify_user_async(
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try:
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# Check if moved away from SSO
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if not self.is_sso_page(page.url):
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self.logger.info(
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"Login successful - redirected away from SSO"
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)
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self.logger.info("Login successful - redirected away from SSO")
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return True
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# Check for success indicators only if context is still valid
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'input[name="prompt"], .chat-interface, .dashboard, .main-content'
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)
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if success_elements:
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self.logger.info(
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"Login successful - found success elements"
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self.logger.info("Login successful - found success elements")
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return True
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except Exception as context_error:
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return True
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if ii > 0 and ii % 10 == 0:
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self.logger.info(f"Still waiting... ({60-ii}s remaining)")
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self.logger.info(f"Still waiting... ({60 - ii}s remaining)")
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return False
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# ----------------------------------------
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from __future__ import annotations
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import os
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)
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__FILE__ = "./src/scitex/scholar/browser/ScholarBrowserManager.py"
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__DIR__ = os.path.dirname(__FILE__)
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# ----------------------------------------
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@@ -124,9 +123,7 @@ class ScholarBrowserManager(BrowserMixin):
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)
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# Stealth
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self.stealth_manager = StealthManager(
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self.viewport_size, self.spoof_dimension
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)
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self.stealth_manager = StealthManager(self.viewport_size, self.spoof_dimension)
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# Cookie
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self.cookie_acceptor = CookieAutoAcceptor()
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@@ -183,9 +180,7 @@ class ScholarBrowserManager(BrowserMixin):
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f"{self.name}: Using persistent context with profile and extensions"
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)
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else:
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logger.warning(
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f"{self.name}: Falling back to regular context creation"
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)
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logger.warning(f"{self.name}: Falling back to regular context creation")
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auth_options = await self.auth_manager.get_auth_options()
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context_options.update(auth_options)
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@@ -199,18 +194,14 @@ class ScholarBrowserManager(BrowserMixin):
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) -> BrowserContext:
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"""Creates a new browser context with stealth options and invisible mode applied."""
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stealth_options = self.stealth_manager.get_stealth_options()
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context = await browser.new_context(
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{**stealth_options, **context_options}
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)
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context = await browser.new_context({**stealth_options, **context_options})
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# Apply stealth script
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await context.add_init_script(self.stealth_manager.get_init_script())
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await context.add_init_script(
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self.stealth_manager.get_dimension_spoofing_script()
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)
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await context.add_init_script(
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self.cookie_acceptor.get_auto_acceptor_script()
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)
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await context.add_init_script(self.cookie_acceptor.get_auto_acceptor_script())
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return context
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# ########################################
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@@ -277,9 +268,7 @@ class ScholarBrowserManager(BrowserMixin):
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)
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if removed_locks > 0:
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logger.debug(
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f"{self.name}: Cleaned up {removed_locks} Chrome lock files"
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)
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logger.debug(f"{self.name}: Cleaned up {removed_locks} Chrome lock files")
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# Wait a moment for the system to release file handles
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time.sleep(1)
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@@ -302,13 +291,19 @@ class ScholarBrowserManager(BrowserMixin):
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# This show_asyncs a small screen with 4 extensions show_asyncn
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persistent_context_launch_options["headless"] = False
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self._persistent_context =
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self._persistent_context = (
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+
await self._persistent_playwright.chromium.launch_persistent_context(
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**persistent_context_launch_options
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)
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)
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# First cleanup run (immediate, non-continuous)
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await close_unwanted_pages(
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await close_unwanted_pages(
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self._persistent_context, delay_sec=1, continuous=False
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)
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# Background continuous monitoring task
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-
asyncio.create_task(
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asyncio.create_task(
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+
close_unwanted_pages(self._persistent_context, delay_sec=5, continuous=True)
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+
)
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# await self._close_unwanted_extension_pages_async()
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# asyncio.create_task(self._close_unwanted_extension_pages_async())
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await self._apply_stealth_scripts_to_persistent_context_async()
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@@ -325,14 +320,10 @@ class ScholarBrowserManager(BrowserMixin):
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325
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timeout=5,
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)
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if result.returncode == 0:
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logger.debug(
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f"{self.name}: Xvfb display :{self.display} is running"
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)
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+
logger.debug(f"{self.name}: Xvfb display :{self.display} is running")
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return True
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else:
|
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-
logger.debug(
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f"{self.name}: Starting Xvfb display :{self.display}"
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-
)
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+
logger.debug(f"{self.name}: Starting Xvfb display :{self.display}")
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# Kill any existing Xvfb on this display first
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subprocess.run(
|
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["pkill", "-f", f"Xvfb.*:{self.display}"],
|
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@@ -437,9 +428,7 @@ class ScholarBrowserManager(BrowserMixin):
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437
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"headless": self.headless,
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429
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"args": launch_args,
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430
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"accept_downloads": True, # Enable download handling
|
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|
-
"downloads_path": str(
|
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|
-
downloads_path
|
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442
|
-
), # Set custom download directory
|
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431
|
+
"downloads_path": str(downloads_path), # Set custom download directory
|
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443
432
|
"proxy": proxy_config,
|
|
444
433
|
"viewport": {
|
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445
434
|
"width": self.viewport_size[0],
|
|
@@ -472,9 +461,7 @@ class ScholarBrowserManager(BrowserMixin):
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472
461
|
|
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473
462
|
try:
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474
463
|
# Check if we have authentication
|
|
475
|
-
if await self.auth_manager.is_authenticate_async(
|
|
476
|
-
verify_live=False
|
|
477
|
-
):
|
|
464
|
+
if await self.auth_manager.is_authenticate_async(verify_live=False):
|
|
478
465
|
cookies = await self.auth_manager.get_auth_cookies_async()
|
|
479
466
|
if cookies:
|
|
480
467
|
await self._persistent_context.add_cookies(cookies)
|
|
@@ -482,17 +469,11 @@ class ScholarBrowserManager(BrowserMixin):
|
|
|
482
469
|
f"{self.name}: Loaded {len(cookies)} authentication cookies into persistent browser context"
|
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483
470
|
)
|
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484
471
|
else:
|
|
485
|
-
logger.debug(
|
|
486
|
-
f"{self.name}: No cookies available from auth manager"
|
|
487
|
-
)
|
|
472
|
+
logger.debug(f"{self.name}: No cookies available from auth manager")
|
|
488
473
|
else:
|
|
489
|
-
logger.debug(
|
|
490
|
-
f"{self.name}: Not authenticated, skipping cookie loading"
|
|
491
|
-
)
|
|
474
|
+
logger.debug(f"{self.name}: Not authenticated, skipping cookie loading")
|
|
492
475
|
except Exception as e:
|
|
493
|
-
logger.warning(
|
|
494
|
-
f"{self.name}: Failed to load authentication cookies: {e}"
|
|
495
|
-
)
|
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476
|
+
logger.warning(f"{self.name}: Failed to load authentication cookies: {e}")
|
|
496
477
|
|
|
497
478
|
async def take_screenshot_async(
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498
479
|
self,
|
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@@ -558,9 +539,7 @@ class ScholarBrowserManager(BrowserMixin):
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558
539
|
)
|
|
559
540
|
except Exception as e:
|
|
560
541
|
if verbose:
|
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561
|
-
logger.debug(
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562
|
-
f"{self.name}: Screenshot {step} failed: {e}"
|
|
563
|
-
)
|
|
542
|
+
logger.debug(f"{self.name}: Screenshot {step} failed: {e}")
|
|
564
543
|
|
|
565
544
|
await asyncio.sleep(interval_seconds)
|
|
566
545
|
elapsed += interval_seconds
|
|
@@ -599,10 +578,7 @@ class ScholarBrowserManager(BrowserMixin):
|
|
|
599
578
|
await self._persistent_context.close()
|
|
600
579
|
logger.debug(f"{self.name}: Closed persistent browser context")
|
|
601
580
|
|
|
602
|
-
if (
|
|
603
|
-
self._persistent_browser
|
|
604
|
-
and self._persistent_browser.is_connected()
|
|
605
|
-
):
|
|
581
|
+
if self._persistent_browser and self._persistent_browser.is_connected():
|
|
606
582
|
await self._persistent_browser.close()
|
|
607
583
|
logger.debug(f"{self.name}: Closed persistent browser")
|
|
608
584
|
|
|
@@ -631,9 +607,10 @@ if __name__ == "__main__":
|
|
|
631
607
|
auth_manager=ScholarAuthManager(),
|
|
632
608
|
)
|
|
633
609
|
|
|
634
|
-
|
|
635
|
-
|
|
636
|
-
|
|
610
|
+
(
|
|
611
|
+
browser,
|
|
612
|
+
context,
|
|
613
|
+
) = await browser_manager.get_authenticated_browser_and_context_async()
|
|
637
614
|
page = await context.new_page()
|
|
638
615
|
|
|
639
616
|
# Test sites configuration
|
|
@@ -686,9 +663,7 @@ if __name__ == "__main__":
|
|
|
686
663
|
|
|
687
664
|
import argparse
|
|
688
665
|
|
|
689
|
-
parser = argparse.ArgumentParser(
|
|
690
|
-
description="ScholarBrowserManager testing"
|
|
691
|
-
)
|
|
666
|
+
parser = argparse.ArgumentParser(description="ScholarBrowserManager testing")
|
|
692
667
|
parser.add_argument(
|
|
693
668
|
"--stealth",
|
|
694
669
|
action="store_true",
|
|
@@ -5,9 +5,8 @@
|
|
|
5
5
|
# ----------------------------------------
|
|
6
6
|
from __future__ import annotations
|
|
7
7
|
import os
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
)
|
|
8
|
+
|
|
9
|
+
__FILE__ = "./src/scitex/scholar/browser/utils/click_and_wait.py"
|
|
11
10
|
__DIR__ = os.path.dirname(__FILE__)
|
|
12
11
|
# ----------------------------------------
|
|
13
12
|
|
|
@@ -73,7 +72,7 @@ async def click_and_wait(
|
|
|
73
72
|
initial_url = page.url
|
|
74
73
|
href = await link.get_attribute("href") or ""
|
|
75
74
|
text = await link.inner_text() or ""
|
|
76
|
-
logger.debug(f"{func_name,} Clicking: '{text[:30]}' -> {href[:50]}")
|
|
75
|
+
logger.debug(f"{(func_name,)} Clicking: '{text[:30]}' -> {href[:50]}")
|
|
77
76
|
|
|
78
77
|
try:
|
|
79
78
|
# Handle potential new page opening
|
|
@@ -5,9 +5,8 @@
|
|
|
5
5
|
# ----------------------------------------
|
|
6
6
|
from __future__ import annotations
|
|
7
7
|
import os
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
)
|
|
8
|
+
|
|
9
|
+
__FILE__ = "./src/scitex/scholar/browser/utils/close_unwanted_pages.py"
|
|
11
10
|
__DIR__ = os.path.dirname(__FILE__)
|
|
12
11
|
# ----------------------------------------
|
|
13
12
|
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@@ -63,10 +62,7 @@ async def close_unwanted_pages(
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63
62
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# Get a valid page for browser_logger (prefer non-extension pages)
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64
63
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valid_page = None
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65
64
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for page in current_pages:
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66
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-
if (
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67
|
-
"chrome-extension://" not in page.url
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68
|
-
and not page.is_closed()
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69
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-
):
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65
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+
if "chrome-extension://" not in page.url and not page.is_closed():
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70
66
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valid_page = page
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71
67
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break
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72
68
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@@ -137,4 +133,5 @@ async def close_unwanted_pages(
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137
133
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f"{func_name}: Cleanup attempt {attempt + 1} failed",
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138
134
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)
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139
135
|
|
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136
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+
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140
137
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# EOF
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