scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1091) hide show
  1. scitex/__init__.py +19 -8
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/benchmark/__init__.py +15 -25
  66. scitex/benchmark/benchmark.py +124 -117
  67. scitex/benchmark/monitor.py +117 -107
  68. scitex/benchmark/profiler.py +61 -58
  69. scitex/bridge/__init__.py +110 -0
  70. scitex/bridge/_helpers.py +149 -0
  71. scitex/bridge/_plt_vis.py +529 -0
  72. scitex/bridge/_protocol.py +283 -0
  73. scitex/bridge/_stats_plt.py +261 -0
  74. scitex/bridge/_stats_vis.py +265 -0
  75. scitex/browser/__init__.py +0 -2
  76. scitex/browser/auth/__init__.py +0 -0
  77. scitex/browser/auth/google.py +16 -11
  78. scitex/browser/automation/CookieHandler.py +2 -3
  79. scitex/browser/collaboration/__init__.py +3 -0
  80. scitex/browser/collaboration/auth_helpers.py +3 -1
  81. scitex/browser/collaboration/collaborative_agent.py +2 -0
  82. scitex/browser/collaboration/interactive_panel.py +2 -2
  83. scitex/browser/collaboration/shared_session.py +20 -11
  84. scitex/browser/collaboration/standard_interactions.py +1 -0
  85. scitex/browser/core/BrowserMixin.py +12 -30
  86. scitex/browser/core/ChromeProfileManager.py +9 -24
  87. scitex/browser/debugging/_browser_logger.py +15 -25
  88. scitex/browser/debugging/_failure_capture.py +9 -2
  89. scitex/browser/debugging/_highlight_element.py +15 -6
  90. scitex/browser/debugging/_show_grid.py +5 -6
  91. scitex/browser/debugging/_sync_session.py +4 -3
  92. scitex/browser/debugging/_test_monitor.py +14 -5
  93. scitex/browser/debugging/_visual_cursor.py +46 -35
  94. scitex/browser/interaction/click_center.py +4 -3
  95. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  96. scitex/browser/interaction/close_popups.py +79 -66
  97. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  98. scitex/browser/pdf/__init__.py +3 -1
  99. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  100. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  101. scitex/browser/remote/CaptchaHandler.py +109 -96
  102. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  103. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  104. scitex/browser/stealth/HumanBehavior.py +4 -9
  105. scitex/browser/stealth/StealthManager.py +11 -26
  106. scitex/capture/__init__.py +17 -17
  107. scitex/capture/__main__.py +2 -3
  108. scitex/capture/capture.py +23 -51
  109. scitex/capture/cli.py +14 -39
  110. scitex/capture/gif.py +5 -9
  111. scitex/capture/mcp_server.py +7 -20
  112. scitex/capture/session.py +4 -3
  113. scitex/capture/utils.py +18 -53
  114. scitex/cli/__init__.py +1 -1
  115. scitex/cli/cloud.py +158 -116
  116. scitex/cli/config.py +224 -0
  117. scitex/cli/main.py +41 -40
  118. scitex/cli/scholar.py +60 -27
  119. scitex/cli/security.py +14 -20
  120. scitex/cli/web.py +87 -90
  121. scitex/cli/writer.py +51 -45
  122. scitex/cloud/__init__.py +14 -11
  123. scitex/cloud/_matplotlib_hook.py +6 -6
  124. scitex/config/README.md +313 -0
  125. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  126. scitex/config/_ScitexConfig.py +319 -0
  127. scitex/config/__init__.py +41 -9
  128. scitex/config/_paths.py +325 -0
  129. scitex/config/default.yaml +81 -0
  130. scitex/context/_suppress_output.py +2 -3
  131. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  132. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  133. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  134. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  135. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  136. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  137. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  138. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  139. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  140. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  141. scitex/db/_BaseMixins/__init__.py +1 -1
  142. scitex/db/__init__.py +9 -1
  143. scitex/db/__main__.py +8 -21
  144. scitex/db/_check_health.py +15 -31
  145. scitex/db/_delete_duplicates.py +7 -4
  146. scitex/db/_inspect.py +22 -38
  147. scitex/db/_inspect_optimized.py +89 -85
  148. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  149. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  150. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  151. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  152. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  153. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  154. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  155. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  156. scitex/db/_postgresql/__init__.py +1 -1
  157. scitex/db/_sqlite3/_SQLite3.py +2 -4
  158. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  159. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  160. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  161. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  162. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  163. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  164. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  165. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  166. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  167. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  169. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  170. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  171. scitex/db/_sqlite3/__init__.py +1 -1
  172. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  173. scitex/decorators/__init__.py +29 -4
  174. scitex/decorators/_auto_order.py +43 -43
  175. scitex/decorators/_batch_fn.py +12 -6
  176. scitex/decorators/_cache_disk.py +8 -9
  177. scitex/decorators/_cache_disk_async.py +8 -7
  178. scitex/decorators/_combined.py +19 -13
  179. scitex/decorators/_converters.py +16 -3
  180. scitex/decorators/_deprecated.py +32 -22
  181. scitex/decorators/_numpy_fn.py +18 -4
  182. scitex/decorators/_pandas_fn.py +17 -5
  183. scitex/decorators/_signal_fn.py +17 -3
  184. scitex/decorators/_torch_fn.py +32 -15
  185. scitex/decorators/_xarray_fn.py +23 -9
  186. scitex/dev/_analyze_code_flow.py +0 -2
  187. scitex/dict/_DotDict.py +15 -19
  188. scitex/dict/_flatten.py +1 -0
  189. scitex/dict/_listed_dict.py +1 -0
  190. scitex/dict/_pop_keys.py +1 -0
  191. scitex/dict/_replace.py +1 -0
  192. scitex/dict/_safe_merge.py +1 -0
  193. scitex/dict/_to_str.py +2 -3
  194. scitex/dsp/__init__.py +13 -4
  195. scitex/dsp/_crop.py +3 -1
  196. scitex/dsp/_detect_ripples.py +3 -1
  197. scitex/dsp/_modulation_index.py +3 -1
  198. scitex/dsp/_time.py +3 -1
  199. scitex/dsp/_wavelet.py +0 -1
  200. scitex/dsp/example.py +0 -5
  201. scitex/dsp/filt.py +4 -0
  202. scitex/dsp/utils/__init__.py +4 -1
  203. scitex/dsp/utils/pac.py +3 -3
  204. scitex/dt/_normalize_timestamp.py +4 -1
  205. scitex/errors.py +3 -6
  206. scitex/etc/__init__.py +1 -1
  207. scitex/gen/_DimHandler.py +6 -6
  208. scitex/gen/__init__.py +5 -1
  209. scitex/gen/_deprecated_close.py +1 -0
  210. scitex/gen/_deprecated_start.py +5 -3
  211. scitex/gen/_detect_environment.py +44 -41
  212. scitex/gen/_detect_notebook_path.py +51 -47
  213. scitex/gen/_embed.py +1 -1
  214. scitex/gen/_get_notebook_path.py +81 -62
  215. scitex/gen/_inspect_module.py +0 -1
  216. scitex/gen/_norm.py +16 -7
  217. scitex/gen/_norm_cache.py +78 -65
  218. scitex/gen/_print_config.py +0 -3
  219. scitex/gen/_src.py +2 -3
  220. scitex/gen/_title_case.py +3 -2
  221. scitex/gen/_to_even.py +8 -8
  222. scitex/gen/_transpose.py +3 -3
  223. scitex/gen/misc.py +0 -3
  224. scitex/gists/_SigMacro_processFigure_S.py +2 -2
  225. scitex/gists/_SigMacro_toBlue.py +2 -2
  226. scitex/gists/__init__.py +4 -1
  227. scitex/git/_branch.py +19 -11
  228. scitex/git/_clone.py +23 -15
  229. scitex/git/_commit.py +10 -12
  230. scitex/git/_init.py +15 -38
  231. scitex/git/_remote.py +9 -3
  232. scitex/git/_result.py +3 -0
  233. scitex/git/_retry.py +2 -5
  234. scitex/git/_types.py +4 -0
  235. scitex/git/_validation.py +8 -8
  236. scitex/git/_workflow.py +4 -4
  237. scitex/io/__init__.py +2 -1
  238. scitex/io/_glob.py +2 -2
  239. scitex/io/_json2md.py +3 -3
  240. scitex/io/_load.py +6 -8
  241. scitex/io/_load_cache.py +71 -71
  242. scitex/io/_load_configs.py +2 -3
  243. scitex/io/_load_modules/_H5Explorer.py +6 -12
  244. scitex/io/_load_modules/_ZarrExplorer.py +3 -3
  245. scitex/io/_load_modules/_bibtex.py +62 -63
  246. scitex/io/_load_modules/_canvas.py +4 -9
  247. scitex/io/_load_modules/_catboost.py +7 -2
  248. scitex/io/_load_modules/_hdf5.py +2 -0
  249. scitex/io/_load_modules/_image.py +5 -1
  250. scitex/io/_load_modules/_matlab.py +3 -1
  251. scitex/io/_load_modules/_optuna.py +0 -1
  252. scitex/io/_load_modules/_pdf.py +38 -29
  253. scitex/io/_load_modules/_sqlite3.py +1 -0
  254. scitex/io/_load_modules/_txt.py +2 -0
  255. scitex/io/_load_modules/_xml.py +9 -9
  256. scitex/io/_load_modules/_zarr.py +12 -10
  257. scitex/io/_metadata.py +76 -37
  258. scitex/io/_qr_utils.py +18 -13
  259. scitex/io/_save.py +220 -63
  260. scitex/io/_save_modules/__init__.py +7 -2
  261. scitex/io/_save_modules/_bibtex.py +66 -61
  262. scitex/io/_save_modules/_canvas.py +5 -6
  263. scitex/io/_save_modules/_catboost.py +2 -2
  264. scitex/io/_save_modules/_csv.py +4 -4
  265. scitex/io/_save_modules/_excel.py +5 -9
  266. scitex/io/_save_modules/_hdf5.py +9 -21
  267. scitex/io/_save_modules/_html.py +5 -5
  268. scitex/io/_save_modules/_image.py +105 -8
  269. scitex/io/_save_modules/_joblib.py +2 -2
  270. scitex/io/_save_modules/_json.py +51 -6
  271. scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
  272. scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
  273. scitex/io/_save_modules/_matlab.py +2 -2
  274. scitex/io/_save_modules/_numpy.py +6 -8
  275. scitex/io/_save_modules/_pickle.py +4 -4
  276. scitex/io/_save_modules/_plotly.py +3 -3
  277. scitex/io/_save_modules/_tex.py +23 -25
  278. scitex/io/_save_modules/_text.py +2 -2
  279. scitex/io/_save_modules/_yaml.py +9 -9
  280. scitex/io/_save_modules/_zarr.py +15 -15
  281. scitex/io/utils/__init__.py +2 -1
  282. scitex/io/utils/h5_to_zarr.py +173 -155
  283. scitex/linalg/__init__.py +1 -1
  284. scitex/linalg/_geometric_median.py +4 -3
  285. scitex/logging/_Tee.py +5 -7
  286. scitex/logging/__init__.py +18 -19
  287. scitex/logging/_config.py +4 -1
  288. scitex/logging/_context.py +6 -5
  289. scitex/logging/_formatters.py +2 -3
  290. scitex/logging/_handlers.py +19 -20
  291. scitex/logging/_levels.py +9 -17
  292. scitex/logging/_logger.py +74 -15
  293. scitex/logging/_print_capture.py +17 -17
  294. scitex/nn/_BNet.py +1 -3
  295. scitex/nn/_Filters.py +6 -2
  296. scitex/nn/_ModulationIndex.py +3 -1
  297. scitex/nn/_PAC.py +3 -2
  298. scitex/nn/_PSD.py +0 -1
  299. scitex/nn/__init__.py +16 -3
  300. scitex/path/_clean.py +10 -8
  301. scitex/path/_find.py +1 -1
  302. scitex/path/_get_spath.py +1 -2
  303. scitex/path/_mk_spath.py +1 -1
  304. scitex/path/_symlink.py +5 -10
  305. scitex/pd/__init__.py +4 -1
  306. scitex/pd/_force_df.py +24 -24
  307. scitex/pd/_get_unique.py +1 -0
  308. scitex/pd/_merge_columns.py +1 -1
  309. scitex/pd/_round.py +11 -7
  310. scitex/pd/_to_xy.py +0 -1
  311. scitex/plt/REQUESTS.md +191 -0
  312. scitex/plt/__init__.py +185 -87
  313. scitex/plt/_subplots/_AxesWrapper.py +22 -6
  314. scitex/plt/_subplots/_AxisWrapper.py +100 -39
  315. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
  316. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
  317. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
  318. scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
  319. scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
  320. scitex/plt/_subplots/_FigWrapper.py +93 -60
  321. scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
  322. scitex/plt/_subplots/__init__.py +10 -0
  323. scitex/plt/_subplots/_export_as_csv.py +89 -47
  324. scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
  325. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
  326. scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
  327. scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
  328. scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
  329. scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
  330. scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
  331. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
  332. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
  333. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
  334. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
  335. scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
  336. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
  337. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
  338. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
  339. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
  340. scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
  341. scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
  342. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
  343. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
  344. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
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  891. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  892. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  893. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  894. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  895. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  896. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  897. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  898. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  899. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  900. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  901. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  902. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  903. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  904. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  905. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  906. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  907. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  908. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  909. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  910. scitex/scholar/utils/validation/__init__.py +0 -0
  911. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  912. scitex/scholar/zotero/__init__.py +1 -1
  913. scitex/security/cli.py +7 -20
  914. scitex/security/github.py +45 -32
  915. scitex/session/__init__.py +8 -9
  916. scitex/session/_decorator.py +49 -42
  917. scitex/session/_lifecycle.py +39 -39
  918. scitex/session/_manager.py +24 -20
  919. scitex/sh/__init__.py +4 -3
  920. scitex/sh/_execute.py +10 -7
  921. scitex/sh/_security.py +3 -3
  922. scitex/sh/_types.py +2 -3
  923. scitex/stats/__init__.py +57 -6
  924. scitex/stats/_schema.py +42 -569
  925. scitex/stats/auto/__init__.py +188 -0
  926. scitex/stats/auto/_context.py +331 -0
  927. scitex/stats/auto/_formatting.py +679 -0
  928. scitex/stats/auto/_rules.py +901 -0
  929. scitex/stats/auto/_selector.py +554 -0
  930. scitex/stats/auto/_styles.py +721 -0
  931. scitex/stats/correct/__init__.py +4 -4
  932. scitex/stats/correct/_correct_bonferroni.py +43 -34
  933. scitex/stats/correct/_correct_fdr.py +14 -40
  934. scitex/stats/correct/_correct_fdr_.py +39 -46
  935. scitex/stats/correct/_correct_holm.py +14 -32
  936. scitex/stats/correct/_correct_sidak.py +36 -21
  937. scitex/stats/descriptive/_circular.py +20 -21
  938. scitex/stats/descriptive/_describe.py +19 -5
  939. scitex/stats/descriptive/_nan.py +5 -7
  940. scitex/stats/descriptive/_real.py +4 -3
  941. scitex/stats/effect_sizes/__init__.py +10 -11
  942. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  943. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  944. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  945. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  946. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  947. scitex/stats/posthoc/__init__.py +3 -3
  948. scitex/stats/posthoc/_dunnett.py +75 -55
  949. scitex/stats/posthoc/_games_howell.py +61 -43
  950. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  951. scitex/stats/power/__init__.py +2 -2
  952. scitex/stats/power/_power.py +56 -56
  953. scitex/stats/tests/__init__.py +1 -1
  954. scitex/stats/tests/correlation/__init__.py +1 -1
  955. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  956. scitex/stats/utils/__init__.py +14 -17
  957. scitex/stats/utils/_effect_size.py +85 -78
  958. scitex/stats/utils/_formatters.py +49 -43
  959. scitex/stats/utils/_normalizers.py +7 -14
  960. scitex/stats/utils/_power.py +56 -56
  961. scitex/str/__init__.py +1 -0
  962. scitex/str/_clean_path.py +3 -3
  963. scitex/str/_factor_out_digits.py +86 -58
  964. scitex/str/_format_plot_text.py +180 -111
  965. scitex/str/_latex.py +19 -19
  966. scitex/str/_latex_fallback.py +9 -10
  967. scitex/str/_parse.py +3 -6
  968. scitex/str/_print_debug.py +13 -13
  969. scitex/str/_printc.py +2 -0
  970. scitex/str/_search.py +3 -3
  971. scitex/template/.legacy/_clone_project.py +9 -13
  972. scitex/template/__init__.py +10 -2
  973. scitex/template/_clone_project.py +7 -2
  974. scitex/template/_copy.py +1 -0
  975. scitex/template/_customize.py +3 -6
  976. scitex/template/_git_strategy.py +2 -3
  977. scitex/template/_rename.py +1 -0
  978. scitex/template/clone_pip_project.py +6 -7
  979. scitex/template/clone_research.py +7 -10
  980. scitex/template/clone_singularity.py +6 -7
  981. scitex/template/clone_writer_directory.py +6 -7
  982. scitex/tex/_preview.py +26 -11
  983. scitex/tex/_to_vec.py +10 -7
  984. scitex/torch/__init__.py +11 -1
  985. scitex/types/_ArrayLike.py +2 -0
  986. scitex/types/_is_listed_X.py +3 -3
  987. scitex/units.py +110 -77
  988. scitex/utils/_compress_hdf5.py +3 -3
  989. scitex/utils/_email.py +8 -4
  990. scitex/utils/_notify.py +14 -8
  991. scitex/utils/_search.py +6 -6
  992. scitex/utils/_verify_scitex_format.py +17 -42
  993. scitex/utils/_verify_scitex_format_v01.py +12 -34
  994. scitex/utils/template.py +4 -3
  995. scitex/vis/__init__.py +0 -0
  996. scitex/vis/backend/__init__.py +3 -3
  997. scitex/vis/backend/{export.py → _export.py} +1 -1
  998. scitex/vis/backend/{parser.py → _parser.py} +1 -3
  999. scitex/vis/backend/{render.py → _render.py} +1 -1
  1000. scitex/vis/canvas.py +15 -3
  1001. scitex/vis/editor/__init__.py +0 -0
  1002. scitex/vis/editor/_dearpygui_editor.py +450 -304
  1003. scitex/vis/editor/_defaults.py +114 -123
  1004. scitex/vis/editor/_edit.py +38 -26
  1005. scitex/vis/editor/_flask_editor.py +8 -8
  1006. scitex/vis/editor/_mpl_editor.py +63 -48
  1007. scitex/vis/editor/_qt_editor.py +210 -159
  1008. scitex/vis/editor/_tkinter_editor.py +146 -89
  1009. scitex/vis/editor/flask_editor/__init__.py +10 -10
  1010. scitex/vis/editor/flask_editor/_bbox.py +529 -0
  1011. scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
  1012. scitex/vis/editor/flask_editor/_plotter.py +567 -0
  1013. scitex/vis/editor/flask_editor/_renderer.py +393 -0
  1014. scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
  1015. scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
  1016. scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
  1017. scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
  1018. scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
  1019. scitex/vis/io/__init__.py +5 -5
  1020. scitex/vis/io/{canvas.py → _canvas.py} +8 -4
  1021. scitex/vis/io/{data.py → _data.py} +13 -9
  1022. scitex/vis/io/{directory.py → _directory.py} +7 -4
  1023. scitex/vis/io/{export.py → _export.py} +15 -12
  1024. scitex/vis/io/{load.py → _load.py} +1 -1
  1025. scitex/vis/io/{panel.py → _panel.py} +21 -13
  1026. scitex/vis/io/{save.py → _save.py} +0 -0
  1027. scitex/vis/model/__init__.py +7 -7
  1028. scitex/vis/model/{annotations.py → _annotations.py} +2 -4
  1029. scitex/vis/model/{axes.py → _axes.py} +1 -1
  1030. scitex/vis/model/{figure.py → _figure.py} +0 -0
  1031. scitex/vis/model/{guides.py → _guides.py} +1 -1
  1032. scitex/vis/model/{plot.py → _plot.py} +2 -4
  1033. scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
  1034. scitex/vis/model/{styles.py → _styles.py} +0 -0
  1035. scitex/vis/utils/__init__.py +2 -2
  1036. scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
  1037. scitex/vis/utils/{validate.py → _validate.py} +3 -9
  1038. scitex/web/__init__.py +7 -1
  1039. scitex/web/_scraping.py +54 -38
  1040. scitex/web/_search_pubmed.py +30 -14
  1041. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1042. scitex/writer/.legacy/_compile.py +18 -28
  1043. scitex/writer/Writer.py +8 -21
  1044. scitex/writer/__init__.py +11 -11
  1045. scitex/writer/_clone_writer_project.py +2 -6
  1046. scitex/writer/_compile/__init__.py +1 -0
  1047. scitex/writer/_compile/_parser.py +1 -0
  1048. scitex/writer/_compile/_runner.py +35 -38
  1049. scitex/writer/_compile/_validator.py +1 -0
  1050. scitex/writer/_compile/manuscript.py +1 -0
  1051. scitex/writer/_compile/revision.py +1 -0
  1052. scitex/writer/_compile/supplementary.py +1 -0
  1053. scitex/writer/_compile_async.py +5 -12
  1054. scitex/writer/_project/__init__.py +1 -0
  1055. scitex/writer/_project/_create.py +10 -25
  1056. scitex/writer/_project/_trees.py +4 -9
  1057. scitex/writer/_project/_validate.py +2 -3
  1058. scitex/writer/_validate_tree_structures.py +7 -18
  1059. scitex/writer/dataclasses/__init__.py +8 -10
  1060. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1061. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1062. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1063. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1064. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1065. scitex/writer/dataclasses/core/_Document.py +2 -3
  1066. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1067. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1068. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1069. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1070. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1071. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1072. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1073. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1074. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1075. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1076. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1077. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1078. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1079. scitex/writer/utils/_parse_script_args.py +20 -23
  1080. scitex/writer/utils/_watch.py +5 -5
  1081. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
  1082. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
  1083. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1084. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1085. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1086. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1087. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1088. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1089. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
  1090. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
  1091. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
@@ -52,16 +52,16 @@ logger = logging.getLogger(__name__)
52
52
  class TimeSeriesCalendarSplit(BaseCrossValidator):
53
53
  """
54
54
  Calendar-based time series cross-validation splitter.
55
-
55
+
56
56
  Splits data based on calendar intervals (e.g., months, weeks, days).
57
57
  Ensures temporal order is preserved and no data leakage occurs.
58
-
58
+
59
59
  Parameters
60
60
  ----------
61
61
  interval : str
62
62
  Time interval for splitting. Options:
63
63
  - 'D': Daily
64
- - 'W': Weekly
64
+ - 'W': Weekly
65
65
  - 'M': Monthly
66
66
  - 'Q': Quarterly
67
67
  - 'Y': Yearly
@@ -74,28 +74,28 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
74
74
  Number of intervals to skip between train and test (default: 0)
75
75
  step_intervals : int
76
76
  Number of intervals to step forward for next fold (default: 1)
77
-
77
+
78
78
  Examples
79
79
  --------
80
80
  >>> from scitex.ai.classification import TimeSeriesCalendarSplit
81
81
  >>> import pandas as pd
82
82
  >>> import numpy as np
83
- >>>
83
+ >>>
84
84
  >>> # Create sample data with daily timestamps
85
85
  >>> dates = pd.date_range('2023-01-01', '2023-12-31', freq='D')
86
86
  >>> X = np.random.randn(len(dates), 10)
87
87
  >>> y = np.random.randint(0, 2, len(dates))
88
- >>>
88
+ >>>
89
89
  >>> # Monthly splits: 6 months train, 1 month test
90
90
  >>> tscal = TimeSeriesCalendarSplit(interval='M', n_train_intervals=6)
91
91
  >>> for train_idx, test_idx in tscal.split(X, y, timestamps=dates):
92
92
  ... print(f"Train: {dates[train_idx[0]]:%Y-%m} to {dates[train_idx[-1]]:%Y-%m}")
93
93
  ... print(f"Test: {dates[test_idx[0]]:%Y-%m} to {dates[test_idx[-1]]:%Y-%m}")
94
94
  """
95
-
95
+
96
96
  def __init__(
97
97
  self,
98
- interval: str = 'M',
98
+ interval: str = "M",
99
99
  n_train_intervals: int = 12,
100
100
  n_test_intervals: int = 1,
101
101
  n_val_intervals: int = 0,
@@ -111,7 +111,7 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
111
111
  self.step_intervals = step_intervals
112
112
  self.random_state = random_state
113
113
  self.rng_manager = np.random.default_rng(random_state)
114
-
114
+
115
115
  def split(
116
116
  self,
117
117
  X: np.ndarray,
@@ -121,7 +121,7 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
121
121
  ) -> Iterator[Tuple[np.ndarray, np.ndarray]]:
122
122
  """
123
123
  Generate calendar-based train/test splits.
124
-
124
+
125
125
  Parameters
126
126
  ----------
127
127
  X : array-like, shape (n_samples, n_features)
@@ -132,7 +132,7 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
132
132
  Timestamps for each sample (required)
133
133
  groups : array-like, shape (n_samples,), optional
134
134
  Group labels (not used in this splitter)
135
-
135
+
136
136
  Yields
137
137
  ------
138
138
  train : ndarray
@@ -142,10 +142,10 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
142
142
  """
143
143
  if timestamps is None:
144
144
  raise ValueError("timestamps must be provided for calendar-based splitting")
145
-
145
+
146
146
  n_samples = _num_samples(X)
147
147
  indices = np.arange(n_samples)
148
-
148
+
149
149
  # Convert timestamps to pandas datetime if needed
150
150
  if not isinstance(timestamps, pd.DatetimeIndex):
151
151
  # Use normalizer to handle various formats
@@ -158,57 +158,52 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
158
158
  dt = dt.replace(tzinfo=None)
159
159
  datetime_list.append(dt)
160
160
  timestamps = pd.DatetimeIndex(datetime_list)
161
-
161
+
162
162
  # Create DataFrame for easier manipulation
163
- df = pd.DataFrame({
164
- 'index': indices,
165
- 'timestamp': timestamps
166
- })
167
-
163
+ df = pd.DataFrame({"index": indices, "timestamp": timestamps})
164
+
168
165
  # Sort by timestamp
169
- df = df.sort_values('timestamp')
170
-
166
+ df = df.sort_values("timestamp")
167
+
171
168
  # Group by the specified interval
172
- df['interval'] = df['timestamp'].dt.to_period(self.interval)
173
- unique_intervals = df['interval'].unique()
174
-
169
+ df["interval"] = df["timestamp"].dt.to_period(self.interval)
170
+ unique_intervals = df["interval"].unique()
171
+
175
172
  # Calculate total intervals needed per fold
176
173
  intervals_per_fold = (
177
- self.n_train_intervals +
178
- self.gap_intervals +
179
- self.n_test_intervals
174
+ self.n_train_intervals + self.gap_intervals + self.n_test_intervals
180
175
  )
181
-
176
+
182
177
  # Generate splits
183
178
  n_intervals = len(unique_intervals)
184
179
  start_idx = 0
185
-
180
+
186
181
  while start_idx + intervals_per_fold <= n_intervals:
187
182
  # Define train intervals
188
183
  train_end = start_idx + self.n_train_intervals
189
184
  train_intervals = unique_intervals[start_idx:train_end]
190
-
185
+
191
186
  # Define test intervals (after gap)
192
187
  test_start = train_end + self.gap_intervals
193
188
  test_end = test_start + self.n_test_intervals
194
-
189
+
195
190
  if test_end > n_intervals:
196
191
  break
197
-
192
+
198
193
  test_intervals = unique_intervals[test_start:test_end]
199
-
194
+
200
195
  # Get indices for train and test
201
- train_mask = df['interval'].isin(train_intervals)
202
- test_mask = df['interval'].isin(test_intervals)
203
-
204
- train_indices = df.loc[train_mask, 'index'].values
205
- test_indices = df.loc[test_mask, 'index'].values
206
-
196
+ train_mask = df["interval"].isin(train_intervals)
197
+ test_mask = df["interval"].isin(test_intervals)
198
+
199
+ train_indices = df.loc[train_mask, "index"].values
200
+ test_indices = df.loc[test_mask, "index"].values
201
+
207
202
  yield train_indices, test_indices
208
-
203
+
209
204
  # Move to next fold
210
205
  start_idx += self.step_intervals
211
-
206
+
212
207
  def split_with_val(
213
208
  self,
214
209
  X: np.ndarray,
@@ -218,10 +213,10 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
218
213
  ) -> Iterator[Tuple[np.ndarray, np.ndarray, np.ndarray]]:
219
214
  """
220
215
  Generate calendar-based train/validation/test splits.
221
-
216
+
222
217
  The validation set comes after training but before test, maintaining
223
218
  temporal order: train < val < test.
224
-
219
+
225
220
  Parameters
226
221
  ----------
227
222
  X : array-like, shape (n_samples, n_features)
@@ -232,7 +227,7 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
232
227
  Timestamps for each sample (required)
233
228
  groups : array-like, shape (n_samples,), optional
234
229
  Group labels (not used in this splitter)
235
-
230
+
236
231
  Yields
237
232
  ------
238
233
  train : ndarray
@@ -244,10 +239,10 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
244
239
  """
245
240
  if timestamps is None:
246
241
  raise ValueError("timestamps must be provided for calendar-based splitting")
247
-
242
+
248
243
  n_samples = _num_samples(X)
249
244
  indices = np.arange(n_samples)
250
-
245
+
251
246
  # Convert timestamps to pandas datetime if needed
252
247
  if not isinstance(timestamps, pd.DatetimeIndex):
253
248
  # Use normalizer to handle various formats
@@ -259,69 +254,80 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
259
254
  dt = dt.replace(tzinfo=None)
260
255
  datetime_list.append(dt)
261
256
  timestamps = pd.DatetimeIndex(datetime_list)
262
-
257
+
263
258
  # Create DataFrame for easier manipulation
264
- df = pd.DataFrame({
265
- 'index': indices,
266
- 'timestamp': timestamps
267
- })
268
-
259
+ df = pd.DataFrame({"index": indices, "timestamp": timestamps})
260
+
269
261
  # Sort by timestamp
270
- df = df.sort_values('timestamp')
271
-
262
+ df = df.sort_values("timestamp")
263
+
272
264
  # Group by the specified interval
273
- df['interval'] = df['timestamp'].dt.to_period(self.interval)
274
- unique_intervals = df['interval'].unique()
275
-
265
+ df["interval"] = df["timestamp"].dt.to_period(self.interval)
266
+ unique_intervals = df["interval"].unique()
267
+
276
268
  # Calculate total intervals needed per fold including validation
277
269
  intervals_per_fold = (
278
- self.n_train_intervals +
279
- self.n_val_intervals +
280
- self.gap_intervals +
281
- self.n_test_intervals
270
+ self.n_train_intervals
271
+ + self.n_val_intervals
272
+ + self.gap_intervals
273
+ + self.n_test_intervals
282
274
  )
283
-
275
+
284
276
  # Generate splits
285
277
  n_intervals = len(unique_intervals)
286
278
  start_idx = 0
287
-
279
+
288
280
  while start_idx + intervals_per_fold <= n_intervals:
289
281
  # Define train intervals
290
282
  train_end = start_idx + self.n_train_intervals
291
283
  train_intervals = unique_intervals[start_idx:train_end]
292
-
284
+
293
285
  # Define validation intervals (after train)
294
286
  val_start = train_end
295
287
  val_end = val_start + self.n_val_intervals
296
- val_intervals = unique_intervals[val_start:val_end] if self.n_val_intervals > 0 else []
297
-
288
+ val_intervals = (
289
+ unique_intervals[val_start:val_end] if self.n_val_intervals > 0 else []
290
+ )
291
+
298
292
  # Define test intervals (after validation and gap)
299
- test_start = val_end + self.gap_intervals if self.n_val_intervals > 0 else train_end + self.gap_intervals
293
+ test_start = (
294
+ val_end + self.gap_intervals
295
+ if self.n_val_intervals > 0
296
+ else train_end + self.gap_intervals
297
+ )
300
298
  test_end = test_start + self.n_test_intervals
301
-
299
+
302
300
  if test_end > n_intervals:
303
301
  break
304
-
302
+
305
303
  test_intervals = unique_intervals[test_start:test_end]
306
-
304
+
307
305
  # Get indices for train, validation, and test
308
- train_mask = df['interval'].isin(train_intervals)
309
- val_mask = df['interval'].isin(val_intervals) if len(val_intervals) > 0 else pd.Series([False] * len(df))
310
- test_mask = df['interval'].isin(test_intervals)
311
-
312
- train_indices = df.loc[train_mask, 'index'].values
313
- val_indices = df.loc[val_mask, 'index'].values if self.n_val_intervals > 0 else np.array([])
314
- test_indices = df.loc[test_mask, 'index'].values
315
-
306
+ train_mask = df["interval"].isin(train_intervals)
307
+ val_mask = (
308
+ df["interval"].isin(val_intervals)
309
+ if len(val_intervals) > 0
310
+ else pd.Series([False] * len(df))
311
+ )
312
+ test_mask = df["interval"].isin(test_intervals)
313
+
314
+ train_indices = df.loc[train_mask, "index"].values
315
+ val_indices = (
316
+ df.loc[val_mask, "index"].values
317
+ if self.n_val_intervals > 0
318
+ else np.array([])
319
+ )
320
+ test_indices = df.loc[test_mask, "index"].values
321
+
316
322
  yield train_indices, val_indices, test_indices
317
-
323
+
318
324
  # Move to next fold
319
325
  start_idx += self.step_intervals
320
-
326
+
321
327
  def get_n_splits(self, X=None, y=None, timestamps=None):
322
328
  """
323
329
  Calculate number of splits.
324
-
330
+
325
331
  Parameters
326
332
  ----------
327
333
  X : array-like, optional
@@ -330,7 +336,7 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
330
336
  Not used
331
337
  timestamps : array-like or pd.DatetimeIndex, optional
332
338
  Timestamps to determine number of possible splits
333
-
339
+
334
340
  Returns
335
341
  -------
336
342
  n_splits : int
@@ -338,7 +344,7 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
338
344
  """
339
345
  if timestamps is None:
340
346
  return -1 # Can't determine without timestamps
341
-
347
+
342
348
  # Convert timestamps to pandas datetime if needed
343
349
  if not isinstance(timestamps, pd.DatetimeIndex):
344
350
  # Use normalizer to handle various formats
@@ -351,29 +357,27 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
351
357
  dt = dt.replace(tzinfo=None)
352
358
  datetime_list.append(dt)
353
359
  timestamps = pd.DatetimeIndex(datetime_list)
354
-
360
+
355
361
  # Count unique intervals
356
362
  intervals = timestamps.to_period(self.interval).unique()
357
363
  n_intervals = len(intervals)
358
-
364
+
359
365
  # Calculate how many complete folds we can create
360
366
  intervals_per_fold = (
361
- self.n_train_intervals +
362
- self.gap_intervals +
363
- self.n_test_intervals
367
+ self.n_train_intervals + self.gap_intervals + self.n_test_intervals
364
368
  )
365
-
369
+
366
370
  if n_intervals < intervals_per_fold:
367
371
  return 0
368
-
372
+
369
373
  # Calculate number of possible splits with stepping
370
374
  n_splits = (n_intervals - intervals_per_fold) // self.step_intervals + 1
371
375
  return max(0, n_splits)
372
-
376
+
373
377
  def plot_splits(self, X, y=None, timestamps=None, figsize=(12, 6), save_path=None):
374
378
  """
375
379
  Visualize the train/test splits as timeline rectangles with scatter plots.
376
-
380
+
377
381
  Parameters
378
382
  ----------
379
383
  X : array-like
@@ -386,12 +390,12 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
386
390
  Figure size (width, height)
387
391
  save_path : str, optional
388
392
  Path to save the plot
389
-
393
+
390
394
  Returns
391
395
  -------
392
396
  fig : matplotlib.figure.Figure
393
397
  The created figure
394
-
398
+
395
399
  Examples
396
400
  --------
397
401
  >>> splitter = TimeSeriesCalendarSplit(interval='M', n_train_intervals=6)
@@ -399,15 +403,19 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
399
403
  >>> fig.savefig('calendar_splits.png')
400
404
  """
401
405
  # matplotlib is always available in SciTeX
402
-
406
+
403
407
  if timestamps is None:
404
- raise ValueError("timestamps must be provided for calendar split visualization")
405
-
408
+ raise ValueError(
409
+ "timestamps must be provided for calendar split visualization"
410
+ )
411
+
406
412
  # Get all splits
407
413
  splits = list(self.split(X, y, timestamps))
408
414
  if not splits:
409
- raise ValueError("No splits generated. Check data size and splitter parameters.")
410
-
415
+ raise ValueError(
416
+ "No splits generated. Check data size and splitter parameters."
417
+ )
418
+
411
419
  # Convert timestamps for plotting
412
420
  if not isinstance(timestamps, pd.DatetimeIndex):
413
421
  datetime_list = []
@@ -417,173 +425,209 @@ class TimeSeriesCalendarSplit(BaseCrossValidator):
417
425
  dt = dt.replace(tzinfo=None)
418
426
  datetime_list.append(dt)
419
427
  timestamps = pd.DatetimeIndex(datetime_list)
420
-
428
+
421
429
  # Create figure
422
430
  fig, ax = plt.subplots(figsize=figsize)
423
-
431
+
424
432
  # Jitter strength for scatter plots
425
433
  jitter_strength = 0.15
426
-
434
+
427
435
  # Plot each fold
428
436
  for fold, (train_idx, test_idx) in enumerate(splits):
429
437
  y_pos = fold
430
-
438
+
431
439
  # Train period rectangle
432
440
  train_start = timestamps[train_idx[0]]
433
441
  train_end = timestamps[train_idx[-1]]
434
- train_width = (train_end - train_start).total_seconds() / 86400 # Convert to days
435
-
442
+ train_width = (
443
+ train_end - train_start
444
+ ).total_seconds() / 86400 # Convert to days
445
+
436
446
  train_rect = patches.Rectangle(
437
- (train_start, y_pos - 0.3),
438
- pd.Timedelta(days=train_width), 0.6,
439
- linewidth=1, edgecolor='blue', facecolor='lightblue', alpha=0.3,
440
- label='Train Set (range)' if fold == 0 else ""
447
+ (train_start, y_pos - 0.3),
448
+ pd.Timedelta(days=train_width),
449
+ 0.6,
450
+ linewidth=1,
451
+ edgecolor="blue",
452
+ facecolor="lightblue",
453
+ alpha=0.3,
454
+ label="Train Set (range)" if fold == 0 else "",
441
455
  )
442
456
  ax.add_patch(train_rect)
443
-
457
+
444
458
  # Add scatter plot for training data points
445
459
  train_times = timestamps[train_idx]
446
460
  train_jitter = np.random.normal(0, jitter_strength, len(train_idx))
447
-
461
+
448
462
  # Color by class if y is provided
449
463
  if y is not None:
450
- train_colors = ['darkblue' if yi == 0 else 'navy' for yi in y[train_idx]]
464
+ train_colors = [
465
+ "darkblue" if yi == 0 else "navy" for yi in y[train_idx]
466
+ ]
451
467
  else:
452
- train_colors = 'darkblue'
453
-
454
- ax.scatter(train_times, y_pos + train_jitter,
455
- c=train_colors, s=20, alpha=0.6, marker='o',
456
- label='Train data points' if fold == 0 else "", zorder=10)
457
-
468
+ train_colors = "darkblue"
469
+
470
+ ax.scatter(
471
+ train_times,
472
+ y_pos + train_jitter,
473
+ c=train_colors,
474
+ s=20,
475
+ alpha=0.6,
476
+ marker="o",
477
+ label="Train data points" if fold == 0 else "",
478
+ zorder=10,
479
+ )
480
+
458
481
  # Test period rectangle
459
482
  test_start = timestamps[test_idx[0]]
460
483
  test_end = timestamps[test_idx[-1]]
461
484
  test_width = (test_end - test_start).total_seconds() / 86400
462
-
485
+
463
486
  test_rect = patches.Rectangle(
464
487
  (test_start, y_pos - 0.3),
465
- pd.Timedelta(days=test_width), 0.6,
466
- linewidth=1, edgecolor='red', facecolor='lightcoral', alpha=0.3,
467
- label='Test Set (range)' if fold == 0 else ""
488
+ pd.Timedelta(days=test_width),
489
+ 0.6,
490
+ linewidth=1,
491
+ edgecolor="red",
492
+ facecolor="lightcoral",
493
+ alpha=0.3,
494
+ label="Test Set (range)" if fold == 0 else "",
468
495
  )
469
496
  ax.add_patch(test_rect)
470
-
497
+
471
498
  # Add scatter plot for test data points
472
499
  test_times = timestamps[test_idx]
473
500
  test_jitter = np.random.normal(0, jitter_strength, len(test_idx))
474
-
501
+
475
502
  # Color by class if y is provided
476
503
  if y is not None:
477
- test_colors = ['darkred' if yi == 0 else 'firebrick' for yi in y[test_idx]]
504
+ test_colors = [
505
+ "darkred" if yi == 0 else "firebrick" for yi in y[test_idx]
506
+ ]
478
507
  else:
479
- test_colors = 'darkred'
480
-
481
- ax.scatter(test_times, y_pos + test_jitter,
482
- c=test_colors, s=20, alpha=0.6, marker='^',
483
- label='Test data points' if fold == 0 else "", zorder=10)
484
-
508
+ test_colors = "darkred"
509
+
510
+ ax.scatter(
511
+ test_times,
512
+ y_pos + test_jitter,
513
+ c=test_colors,
514
+ s=20,
515
+ alpha=0.6,
516
+ marker="^",
517
+ label="Test data points" if fold == 0 else "",
518
+ zorder=10,
519
+ )
520
+
485
521
  # Format plot
486
522
  ax.set_ylim(-0.5, len(splits) - 0.5)
487
523
  ax.set_xlim(timestamps.min(), timestamps.max())
488
- ax.set_xlabel('Time')
489
- ax.set_ylabel('Fold')
490
- ax.set_title(f'Time Series Calendar Split Visualization\\n'
491
- f'Interval: {self.interval}, Train: {self.n_train_intervals}, '
492
- f'Test: {self.n_test_intervals}')
493
-
524
+ ax.set_xlabel("Time")
525
+ ax.set_ylabel("Fold")
526
+ ax.set_title(
527
+ f"Time Series Calendar Split Visualization\\n"
528
+ f"Interval: {self.interval}, Train: {self.n_train_intervals}, "
529
+ f"Test: {self.n_test_intervals}"
530
+ )
531
+
494
532
  # Set y-ticks
495
533
  ax.set_yticks(range(len(splits)))
496
- ax.set_yticklabels([f'Fold {i}' for i in range(len(splits))])
497
-
534
+ ax.set_yticklabels([f"Fold {i}" for i in range(len(splits))])
535
+
498
536
  # Add legend
499
- ax.legend(loc='upper right')
500
-
537
+ ax.legend(loc="upper right")
538
+
501
539
  # Format x-axis
502
- ax.tick_params(axis='x', rotation=45)
503
-
540
+ ax.tick_params(axis="x", rotation=45)
541
+
504
542
  plt.tight_layout()
505
-
543
+
506
544
  if save_path:
507
- fig.savefig(save_path, dpi=150, bbox_inches='tight')
508
-
545
+ fig.savefig(save_path, dpi=150, bbox_inches="tight")
546
+
509
547
  return fig
510
548
 
511
549
 
512
550
  """Functions & Classes"""
551
+
552
+
513
553
  def main(args) -> int:
514
554
  """Demonstrate TimeSeriesCalendarSplit functionality.
515
-
555
+
516
556
  Args:
517
557
  args: Command line arguments
518
-
558
+
519
559
  Returns:
520
560
  int: Exit status
521
561
  """
522
562
  logger.info("Demonstrating TimeSeriesCalendarSplit functionality")
523
-
563
+
524
564
  # Generate test data with calendar-based timestamps
525
565
  np.random.seed(42)
526
566
  n_samples = args.n_samples
527
-
567
+
528
568
  # Create daily timestamps over several months
529
569
  start_date = pd.Timestamp(args.start_date)
530
570
  timestamps = pd.date_range(start=start_date, periods=n_samples, freq=args.data_freq)
531
-
571
+
532
572
  # Generate features and target
533
573
  X = np.random.randn(n_samples, 5)
534
574
  y = np.random.randint(0, 2, n_samples)
535
-
575
+
536
576
  logger.info(f"Generated test data: {n_samples} samples")
537
- logger.info(f"Date range: {timestamps[0].strftime('%Y-%m-%d')} to {timestamps[-1].strftime('%Y-%m-%d')}")
577
+ logger.info(
578
+ f"Date range: {timestamps[0].strftime('%Y-%m-%d')} to {timestamps[-1].strftime('%Y-%m-%d')}"
579
+ )
538
580
  logger.info(f"Data frequency: {args.data_freq}")
539
-
581
+
540
582
  # Create calendar splitter
541
583
  splitter = TimeSeriesCalendarSplit(
542
584
  interval=args.interval,
543
585
  n_train_intervals=args.n_train_intervals,
544
586
  n_test_intervals=args.n_test_intervals,
545
587
  gap_intervals=args.gap_intervals,
546
- step_intervals=args.step_intervals
588
+ step_intervals=args.step_intervals,
547
589
  )
548
-
590
+
549
591
  logger.info(f"Calendar split configuration:")
550
592
  logger.info(f" Interval: {args.interval}")
551
593
  logger.info(f" Train intervals: {args.n_train_intervals}")
552
594
  logger.info(f" Test intervals: {args.n_test_intervals}")
553
595
  logger.info(f" Gap intervals: {args.gap_intervals}")
554
596
  logger.info(f" Step intervals: {args.step_intervals}")
555
-
597
+
556
598
  # Test splits
557
599
  splits = []
558
- for fold, (train_idx, test_idx) in enumerate(splitter.split(X, y, timestamps=timestamps)):
600
+ for fold, (train_idx, test_idx) in enumerate(
601
+ splitter.split(X, y, timestamps=timestamps)
602
+ ):
559
603
  if fold >= args.max_folds:
560
604
  break
561
605
  splits.append((train_idx, test_idx))
562
-
563
- train_start = timestamps[train_idx[0]].strftime('%Y-%m-%d')
564
- train_end = timestamps[train_idx[-1]].strftime('%Y-%m-%d')
565
- test_start = timestamps[test_idx[0]].strftime('%Y-%m-%d')
566
- test_end = timestamps[test_idx[-1]].strftime('%Y-%m-%d')
567
-
606
+
607
+ train_start = timestamps[train_idx[0]].strftime("%Y-%m-%d")
608
+ train_end = timestamps[train_idx[-1]].strftime("%Y-%m-%d")
609
+ test_start = timestamps[test_idx[0]].strftime("%Y-%m-%d")
610
+ test_end = timestamps[test_idx[-1]].strftime("%Y-%m-%d")
611
+
568
612
  logger.info(f"Fold {fold}:")
569
613
  logger.info(f" Train: {train_start} to {train_end} ({len(train_idx)} samples)")
570
614
  logger.info(f" Test: {test_start} to {test_end} ({len(test_idx)} samples)")
571
-
615
+
572
616
  # Verify temporal order
573
617
  train_times = timestamps[train_idx]
574
618
  test_times = timestamps[test_idx]
575
619
  temporal_ok = train_times.max() < test_times.min()
576
620
  status = "✓" if temporal_ok else "✗"
577
621
  logger.info(f" Temporal order: {status}")
578
-
622
+
579
623
  # Generate visualization
580
624
  logger.info("Generating calendar split visualization")
581
625
  fig = splitter.plot_splits(X, y, timestamps)
582
-
626
+
583
627
  # Save using SciTeX framework
584
628
  stx.io.save(fig, "./calendar_splits_demo.png", symlink_from_cwd=True)
585
629
  plt.close(fig)
586
-
630
+
587
631
  logger.info("TimeSeriesCalendarSplit demonstration completed successfully")
588
632
  return 0
589
633
 
@@ -591,7 +635,7 @@ def main(args) -> int:
591
635
  def parse_args() -> argparse.Namespace:
592
636
  """Parse command line arguments."""
593
637
  parser = argparse.ArgumentParser(
594
- description='Demonstrate TimeSeriesCalendarSplit with calendar-based intervals'
638
+ description="Demonstrate TimeSeriesCalendarSplit with calendar-based intervals"
595
639
  )
596
640
  parser.add_argument(
597
641
  "--n-samples",
@@ -682,7 +726,7 @@ def run_main() -> None:
682
726
  )
683
727
 
684
728
 
685
- if __name__ == '__main__':
729
+ if __name__ == "__main__":
686
730
  run_main()
687
731
 
688
- # EOF
732
+ # EOF