scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1091) hide show
  1. scitex/__init__.py +19 -8
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/benchmark/__init__.py +15 -25
  66. scitex/benchmark/benchmark.py +124 -117
  67. scitex/benchmark/monitor.py +117 -107
  68. scitex/benchmark/profiler.py +61 -58
  69. scitex/bridge/__init__.py +110 -0
  70. scitex/bridge/_helpers.py +149 -0
  71. scitex/bridge/_plt_vis.py +529 -0
  72. scitex/bridge/_protocol.py +283 -0
  73. scitex/bridge/_stats_plt.py +261 -0
  74. scitex/bridge/_stats_vis.py +265 -0
  75. scitex/browser/__init__.py +0 -2
  76. scitex/browser/auth/__init__.py +0 -0
  77. scitex/browser/auth/google.py +16 -11
  78. scitex/browser/automation/CookieHandler.py +2 -3
  79. scitex/browser/collaboration/__init__.py +3 -0
  80. scitex/browser/collaboration/auth_helpers.py +3 -1
  81. scitex/browser/collaboration/collaborative_agent.py +2 -0
  82. scitex/browser/collaboration/interactive_panel.py +2 -2
  83. scitex/browser/collaboration/shared_session.py +20 -11
  84. scitex/browser/collaboration/standard_interactions.py +1 -0
  85. scitex/browser/core/BrowserMixin.py +12 -30
  86. scitex/browser/core/ChromeProfileManager.py +9 -24
  87. scitex/browser/debugging/_browser_logger.py +15 -25
  88. scitex/browser/debugging/_failure_capture.py +9 -2
  89. scitex/browser/debugging/_highlight_element.py +15 -6
  90. scitex/browser/debugging/_show_grid.py +5 -6
  91. scitex/browser/debugging/_sync_session.py +4 -3
  92. scitex/browser/debugging/_test_monitor.py +14 -5
  93. scitex/browser/debugging/_visual_cursor.py +46 -35
  94. scitex/browser/interaction/click_center.py +4 -3
  95. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  96. scitex/browser/interaction/close_popups.py +79 -66
  97. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  98. scitex/browser/pdf/__init__.py +3 -1
  99. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  100. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  101. scitex/browser/remote/CaptchaHandler.py +109 -96
  102. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  103. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  104. scitex/browser/stealth/HumanBehavior.py +4 -9
  105. scitex/browser/stealth/StealthManager.py +11 -26
  106. scitex/capture/__init__.py +17 -17
  107. scitex/capture/__main__.py +2 -3
  108. scitex/capture/capture.py +23 -51
  109. scitex/capture/cli.py +14 -39
  110. scitex/capture/gif.py +5 -9
  111. scitex/capture/mcp_server.py +7 -20
  112. scitex/capture/session.py +4 -3
  113. scitex/capture/utils.py +18 -53
  114. scitex/cli/__init__.py +1 -1
  115. scitex/cli/cloud.py +158 -116
  116. scitex/cli/config.py +224 -0
  117. scitex/cli/main.py +41 -40
  118. scitex/cli/scholar.py +60 -27
  119. scitex/cli/security.py +14 -20
  120. scitex/cli/web.py +87 -90
  121. scitex/cli/writer.py +51 -45
  122. scitex/cloud/__init__.py +14 -11
  123. scitex/cloud/_matplotlib_hook.py +6 -6
  124. scitex/config/README.md +313 -0
  125. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  126. scitex/config/_ScitexConfig.py +319 -0
  127. scitex/config/__init__.py +41 -9
  128. scitex/config/_paths.py +325 -0
  129. scitex/config/default.yaml +81 -0
  130. scitex/context/_suppress_output.py +2 -3
  131. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  132. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  133. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  134. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  135. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  136. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  137. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  138. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  139. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  140. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  141. scitex/db/_BaseMixins/__init__.py +1 -1
  142. scitex/db/__init__.py +9 -1
  143. scitex/db/__main__.py +8 -21
  144. scitex/db/_check_health.py +15 -31
  145. scitex/db/_delete_duplicates.py +7 -4
  146. scitex/db/_inspect.py +22 -38
  147. scitex/db/_inspect_optimized.py +89 -85
  148. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  149. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  150. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  151. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  152. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  153. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  154. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  155. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  156. scitex/db/_postgresql/__init__.py +1 -1
  157. scitex/db/_sqlite3/_SQLite3.py +2 -4
  158. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  159. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  160. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  161. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  162. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  163. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  164. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  165. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  166. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  167. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  169. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  170. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  171. scitex/db/_sqlite3/__init__.py +1 -1
  172. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  173. scitex/decorators/__init__.py +29 -4
  174. scitex/decorators/_auto_order.py +43 -43
  175. scitex/decorators/_batch_fn.py +12 -6
  176. scitex/decorators/_cache_disk.py +8 -9
  177. scitex/decorators/_cache_disk_async.py +8 -7
  178. scitex/decorators/_combined.py +19 -13
  179. scitex/decorators/_converters.py +16 -3
  180. scitex/decorators/_deprecated.py +32 -22
  181. scitex/decorators/_numpy_fn.py +18 -4
  182. scitex/decorators/_pandas_fn.py +17 -5
  183. scitex/decorators/_signal_fn.py +17 -3
  184. scitex/decorators/_torch_fn.py +32 -15
  185. scitex/decorators/_xarray_fn.py +23 -9
  186. scitex/dev/_analyze_code_flow.py +0 -2
  187. scitex/dict/_DotDict.py +15 -19
  188. scitex/dict/_flatten.py +1 -0
  189. scitex/dict/_listed_dict.py +1 -0
  190. scitex/dict/_pop_keys.py +1 -0
  191. scitex/dict/_replace.py +1 -0
  192. scitex/dict/_safe_merge.py +1 -0
  193. scitex/dict/_to_str.py +2 -3
  194. scitex/dsp/__init__.py +13 -4
  195. scitex/dsp/_crop.py +3 -1
  196. scitex/dsp/_detect_ripples.py +3 -1
  197. scitex/dsp/_modulation_index.py +3 -1
  198. scitex/dsp/_time.py +3 -1
  199. scitex/dsp/_wavelet.py +0 -1
  200. scitex/dsp/example.py +0 -5
  201. scitex/dsp/filt.py +4 -0
  202. scitex/dsp/utils/__init__.py +4 -1
  203. scitex/dsp/utils/pac.py +3 -3
  204. scitex/dt/_normalize_timestamp.py +4 -1
  205. scitex/errors.py +3 -6
  206. scitex/etc/__init__.py +1 -1
  207. scitex/gen/_DimHandler.py +6 -6
  208. scitex/gen/__init__.py +5 -1
  209. scitex/gen/_deprecated_close.py +1 -0
  210. scitex/gen/_deprecated_start.py +5 -3
  211. scitex/gen/_detect_environment.py +44 -41
  212. scitex/gen/_detect_notebook_path.py +51 -47
  213. scitex/gen/_embed.py +1 -1
  214. scitex/gen/_get_notebook_path.py +81 -62
  215. scitex/gen/_inspect_module.py +0 -1
  216. scitex/gen/_norm.py +16 -7
  217. scitex/gen/_norm_cache.py +78 -65
  218. scitex/gen/_print_config.py +0 -3
  219. scitex/gen/_src.py +2 -3
  220. scitex/gen/_title_case.py +3 -2
  221. scitex/gen/_to_even.py +8 -8
  222. scitex/gen/_transpose.py +3 -3
  223. scitex/gen/misc.py +0 -3
  224. scitex/gists/_SigMacro_processFigure_S.py +2 -2
  225. scitex/gists/_SigMacro_toBlue.py +2 -2
  226. scitex/gists/__init__.py +4 -1
  227. scitex/git/_branch.py +19 -11
  228. scitex/git/_clone.py +23 -15
  229. scitex/git/_commit.py +10 -12
  230. scitex/git/_init.py +15 -38
  231. scitex/git/_remote.py +9 -3
  232. scitex/git/_result.py +3 -0
  233. scitex/git/_retry.py +2 -5
  234. scitex/git/_types.py +4 -0
  235. scitex/git/_validation.py +8 -8
  236. scitex/git/_workflow.py +4 -4
  237. scitex/io/__init__.py +2 -1
  238. scitex/io/_glob.py +2 -2
  239. scitex/io/_json2md.py +3 -3
  240. scitex/io/_load.py +6 -8
  241. scitex/io/_load_cache.py +71 -71
  242. scitex/io/_load_configs.py +2 -3
  243. scitex/io/_load_modules/_H5Explorer.py +6 -12
  244. scitex/io/_load_modules/_ZarrExplorer.py +3 -3
  245. scitex/io/_load_modules/_bibtex.py +62 -63
  246. scitex/io/_load_modules/_canvas.py +4 -9
  247. scitex/io/_load_modules/_catboost.py +7 -2
  248. scitex/io/_load_modules/_hdf5.py +2 -0
  249. scitex/io/_load_modules/_image.py +5 -1
  250. scitex/io/_load_modules/_matlab.py +3 -1
  251. scitex/io/_load_modules/_optuna.py +0 -1
  252. scitex/io/_load_modules/_pdf.py +38 -29
  253. scitex/io/_load_modules/_sqlite3.py +1 -0
  254. scitex/io/_load_modules/_txt.py +2 -0
  255. scitex/io/_load_modules/_xml.py +9 -9
  256. scitex/io/_load_modules/_zarr.py +12 -10
  257. scitex/io/_metadata.py +76 -37
  258. scitex/io/_qr_utils.py +18 -13
  259. scitex/io/_save.py +220 -63
  260. scitex/io/_save_modules/__init__.py +7 -2
  261. scitex/io/_save_modules/_bibtex.py +66 -61
  262. scitex/io/_save_modules/_canvas.py +5 -6
  263. scitex/io/_save_modules/_catboost.py +2 -2
  264. scitex/io/_save_modules/_csv.py +4 -4
  265. scitex/io/_save_modules/_excel.py +5 -9
  266. scitex/io/_save_modules/_hdf5.py +9 -21
  267. scitex/io/_save_modules/_html.py +5 -5
  268. scitex/io/_save_modules/_image.py +105 -8
  269. scitex/io/_save_modules/_joblib.py +2 -2
  270. scitex/io/_save_modules/_json.py +51 -6
  271. scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
  272. scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
  273. scitex/io/_save_modules/_matlab.py +2 -2
  274. scitex/io/_save_modules/_numpy.py +6 -8
  275. scitex/io/_save_modules/_pickle.py +4 -4
  276. scitex/io/_save_modules/_plotly.py +3 -3
  277. scitex/io/_save_modules/_tex.py +23 -25
  278. scitex/io/_save_modules/_text.py +2 -2
  279. scitex/io/_save_modules/_yaml.py +9 -9
  280. scitex/io/_save_modules/_zarr.py +15 -15
  281. scitex/io/utils/__init__.py +2 -1
  282. scitex/io/utils/h5_to_zarr.py +173 -155
  283. scitex/linalg/__init__.py +1 -1
  284. scitex/linalg/_geometric_median.py +4 -3
  285. scitex/logging/_Tee.py +5 -7
  286. scitex/logging/__init__.py +18 -19
  287. scitex/logging/_config.py +4 -1
  288. scitex/logging/_context.py +6 -5
  289. scitex/logging/_formatters.py +2 -3
  290. scitex/logging/_handlers.py +19 -20
  291. scitex/logging/_levels.py +9 -17
  292. scitex/logging/_logger.py +74 -15
  293. scitex/logging/_print_capture.py +17 -17
  294. scitex/nn/_BNet.py +1 -3
  295. scitex/nn/_Filters.py +6 -2
  296. scitex/nn/_ModulationIndex.py +3 -1
  297. scitex/nn/_PAC.py +3 -2
  298. scitex/nn/_PSD.py +0 -1
  299. scitex/nn/__init__.py +16 -3
  300. scitex/path/_clean.py +10 -8
  301. scitex/path/_find.py +1 -1
  302. scitex/path/_get_spath.py +1 -2
  303. scitex/path/_mk_spath.py +1 -1
  304. scitex/path/_symlink.py +5 -10
  305. scitex/pd/__init__.py +4 -1
  306. scitex/pd/_force_df.py +24 -24
  307. scitex/pd/_get_unique.py +1 -0
  308. scitex/pd/_merge_columns.py +1 -1
  309. scitex/pd/_round.py +11 -7
  310. scitex/pd/_to_xy.py +0 -1
  311. scitex/plt/REQUESTS.md +191 -0
  312. scitex/plt/__init__.py +185 -87
  313. scitex/plt/_subplots/_AxesWrapper.py +22 -6
  314. scitex/plt/_subplots/_AxisWrapper.py +100 -39
  315. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
  316. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
  317. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
  318. scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
  319. scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
  320. scitex/plt/_subplots/_FigWrapper.py +93 -60
  321. scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
  322. scitex/plt/_subplots/__init__.py +10 -0
  323. scitex/plt/_subplots/_export_as_csv.py +89 -47
  324. scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
  325. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
  326. scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
  327. scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
  328. scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
  329. scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
  330. scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
  331. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
  332. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
  333. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
  334. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
  335. scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
  336. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
  337. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
  338. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
  339. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
  340. scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
  341. scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
  342. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
  343. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
  344. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
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  891. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  892. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  893. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  894. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  895. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  896. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  897. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  898. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  899. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  900. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  901. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  902. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  903. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  904. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  905. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  906. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  907. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  908. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  909. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  910. scitex/scholar/utils/validation/__init__.py +0 -0
  911. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  912. scitex/scholar/zotero/__init__.py +1 -1
  913. scitex/security/cli.py +7 -20
  914. scitex/security/github.py +45 -32
  915. scitex/session/__init__.py +8 -9
  916. scitex/session/_decorator.py +49 -42
  917. scitex/session/_lifecycle.py +39 -39
  918. scitex/session/_manager.py +24 -20
  919. scitex/sh/__init__.py +4 -3
  920. scitex/sh/_execute.py +10 -7
  921. scitex/sh/_security.py +3 -3
  922. scitex/sh/_types.py +2 -3
  923. scitex/stats/__init__.py +57 -6
  924. scitex/stats/_schema.py +42 -569
  925. scitex/stats/auto/__init__.py +188 -0
  926. scitex/stats/auto/_context.py +331 -0
  927. scitex/stats/auto/_formatting.py +679 -0
  928. scitex/stats/auto/_rules.py +901 -0
  929. scitex/stats/auto/_selector.py +554 -0
  930. scitex/stats/auto/_styles.py +721 -0
  931. scitex/stats/correct/__init__.py +4 -4
  932. scitex/stats/correct/_correct_bonferroni.py +43 -34
  933. scitex/stats/correct/_correct_fdr.py +14 -40
  934. scitex/stats/correct/_correct_fdr_.py +39 -46
  935. scitex/stats/correct/_correct_holm.py +14 -32
  936. scitex/stats/correct/_correct_sidak.py +36 -21
  937. scitex/stats/descriptive/_circular.py +20 -21
  938. scitex/stats/descriptive/_describe.py +19 -5
  939. scitex/stats/descriptive/_nan.py +5 -7
  940. scitex/stats/descriptive/_real.py +4 -3
  941. scitex/stats/effect_sizes/__init__.py +10 -11
  942. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  943. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  944. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  945. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  946. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  947. scitex/stats/posthoc/__init__.py +3 -3
  948. scitex/stats/posthoc/_dunnett.py +75 -55
  949. scitex/stats/posthoc/_games_howell.py +61 -43
  950. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  951. scitex/stats/power/__init__.py +2 -2
  952. scitex/stats/power/_power.py +56 -56
  953. scitex/stats/tests/__init__.py +1 -1
  954. scitex/stats/tests/correlation/__init__.py +1 -1
  955. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  956. scitex/stats/utils/__init__.py +14 -17
  957. scitex/stats/utils/_effect_size.py +85 -78
  958. scitex/stats/utils/_formatters.py +49 -43
  959. scitex/stats/utils/_normalizers.py +7 -14
  960. scitex/stats/utils/_power.py +56 -56
  961. scitex/str/__init__.py +1 -0
  962. scitex/str/_clean_path.py +3 -3
  963. scitex/str/_factor_out_digits.py +86 -58
  964. scitex/str/_format_plot_text.py +180 -111
  965. scitex/str/_latex.py +19 -19
  966. scitex/str/_latex_fallback.py +9 -10
  967. scitex/str/_parse.py +3 -6
  968. scitex/str/_print_debug.py +13 -13
  969. scitex/str/_printc.py +2 -0
  970. scitex/str/_search.py +3 -3
  971. scitex/template/.legacy/_clone_project.py +9 -13
  972. scitex/template/__init__.py +10 -2
  973. scitex/template/_clone_project.py +7 -2
  974. scitex/template/_copy.py +1 -0
  975. scitex/template/_customize.py +3 -6
  976. scitex/template/_git_strategy.py +2 -3
  977. scitex/template/_rename.py +1 -0
  978. scitex/template/clone_pip_project.py +6 -7
  979. scitex/template/clone_research.py +7 -10
  980. scitex/template/clone_singularity.py +6 -7
  981. scitex/template/clone_writer_directory.py +6 -7
  982. scitex/tex/_preview.py +26 -11
  983. scitex/tex/_to_vec.py +10 -7
  984. scitex/torch/__init__.py +11 -1
  985. scitex/types/_ArrayLike.py +2 -0
  986. scitex/types/_is_listed_X.py +3 -3
  987. scitex/units.py +110 -77
  988. scitex/utils/_compress_hdf5.py +3 -3
  989. scitex/utils/_email.py +8 -4
  990. scitex/utils/_notify.py +14 -8
  991. scitex/utils/_search.py +6 -6
  992. scitex/utils/_verify_scitex_format.py +17 -42
  993. scitex/utils/_verify_scitex_format_v01.py +12 -34
  994. scitex/utils/template.py +4 -3
  995. scitex/vis/__init__.py +0 -0
  996. scitex/vis/backend/__init__.py +3 -3
  997. scitex/vis/backend/{export.py → _export.py} +1 -1
  998. scitex/vis/backend/{parser.py → _parser.py} +1 -3
  999. scitex/vis/backend/{render.py → _render.py} +1 -1
  1000. scitex/vis/canvas.py +15 -3
  1001. scitex/vis/editor/__init__.py +0 -0
  1002. scitex/vis/editor/_dearpygui_editor.py +450 -304
  1003. scitex/vis/editor/_defaults.py +114 -123
  1004. scitex/vis/editor/_edit.py +38 -26
  1005. scitex/vis/editor/_flask_editor.py +8 -8
  1006. scitex/vis/editor/_mpl_editor.py +63 -48
  1007. scitex/vis/editor/_qt_editor.py +210 -159
  1008. scitex/vis/editor/_tkinter_editor.py +146 -89
  1009. scitex/vis/editor/flask_editor/__init__.py +10 -10
  1010. scitex/vis/editor/flask_editor/_bbox.py +529 -0
  1011. scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
  1012. scitex/vis/editor/flask_editor/_plotter.py +567 -0
  1013. scitex/vis/editor/flask_editor/_renderer.py +393 -0
  1014. scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
  1015. scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
  1016. scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
  1017. scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
  1018. scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
  1019. scitex/vis/io/__init__.py +5 -5
  1020. scitex/vis/io/{canvas.py → _canvas.py} +8 -4
  1021. scitex/vis/io/{data.py → _data.py} +13 -9
  1022. scitex/vis/io/{directory.py → _directory.py} +7 -4
  1023. scitex/vis/io/{export.py → _export.py} +15 -12
  1024. scitex/vis/io/{load.py → _load.py} +1 -1
  1025. scitex/vis/io/{panel.py → _panel.py} +21 -13
  1026. scitex/vis/io/{save.py → _save.py} +0 -0
  1027. scitex/vis/model/__init__.py +7 -7
  1028. scitex/vis/model/{annotations.py → _annotations.py} +2 -4
  1029. scitex/vis/model/{axes.py → _axes.py} +1 -1
  1030. scitex/vis/model/{figure.py → _figure.py} +0 -0
  1031. scitex/vis/model/{guides.py → _guides.py} +1 -1
  1032. scitex/vis/model/{plot.py → _plot.py} +2 -4
  1033. scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
  1034. scitex/vis/model/{styles.py → _styles.py} +0 -0
  1035. scitex/vis/utils/__init__.py +2 -2
  1036. scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
  1037. scitex/vis/utils/{validate.py → _validate.py} +3 -9
  1038. scitex/web/__init__.py +7 -1
  1039. scitex/web/_scraping.py +54 -38
  1040. scitex/web/_search_pubmed.py +30 -14
  1041. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1042. scitex/writer/.legacy/_compile.py +18 -28
  1043. scitex/writer/Writer.py +8 -21
  1044. scitex/writer/__init__.py +11 -11
  1045. scitex/writer/_clone_writer_project.py +2 -6
  1046. scitex/writer/_compile/__init__.py +1 -0
  1047. scitex/writer/_compile/_parser.py +1 -0
  1048. scitex/writer/_compile/_runner.py +35 -38
  1049. scitex/writer/_compile/_validator.py +1 -0
  1050. scitex/writer/_compile/manuscript.py +1 -0
  1051. scitex/writer/_compile/revision.py +1 -0
  1052. scitex/writer/_compile/supplementary.py +1 -0
  1053. scitex/writer/_compile_async.py +5 -12
  1054. scitex/writer/_project/__init__.py +1 -0
  1055. scitex/writer/_project/_create.py +10 -25
  1056. scitex/writer/_project/_trees.py +4 -9
  1057. scitex/writer/_project/_validate.py +2 -3
  1058. scitex/writer/_validate_tree_structures.py +7 -18
  1059. scitex/writer/dataclasses/__init__.py +8 -10
  1060. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1061. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1062. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1063. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1064. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1065. scitex/writer/dataclasses/core/_Document.py +2 -3
  1066. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1067. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1068. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1069. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1070. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1071. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1072. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1073. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1074. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1075. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1076. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1077. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1078. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1079. scitex/writer/utils/_parse_script_args.py +20 -23
  1080. scitex/writer/utils/_watch.py +5 -5
  1081. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
  1082. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
  1083. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1084. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1085. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1086. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1087. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1088. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1089. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
  1090. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
  1091. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
@@ -20,15 +20,18 @@ from typing import Union, Tuple, Optional
20
20
 
21
21
  try:
22
22
  from ._latex_fallback import safe_latex_render, latex_fallback_decorator
23
+
23
24
  FALLBACK_AVAILABLE = True
24
25
  except ImportError:
25
26
  FALLBACK_AVAILABLE = False
27
+
26
28
  # Define dummy decorator if fallback not available
27
29
  def latex_fallback_decorator(fallback_strategy="auto", preserve_math=True):
28
30
  def decorator(func):
29
31
  return func
32
+
30
33
  return decorator
31
-
34
+
32
35
  def safe_latex_render(text, fallback_strategy="auto", preserve_math=True):
33
36
  return text
34
37
 
@@ -41,11 +44,11 @@ def format_plot_text(
41
44
  latex_math: bool = True,
42
45
  scientific_notation: bool = True,
43
46
  enable_fallback: bool = True,
44
- replace_underscores: bool = True
47
+ replace_underscores: bool = True,
45
48
  ) -> str:
46
49
  """
47
50
  Format text for scientific plots with proper conventions and LaTeX fallback.
48
-
51
+
49
52
  Parameters
50
53
  ----------
51
54
  text : str
@@ -62,65 +65,65 @@ def format_plot_text(
62
65
  Whether to enable LaTeX fallback mechanisms, by default True
63
66
  replace_underscores : bool, optional
64
67
  Whether to replace underscores with spaces, by default True
65
-
68
+
66
69
  Returns
67
70
  -------
68
71
  str
69
72
  Formatted text ready for matplotlib with automatic LaTeX fallback
70
-
73
+
71
74
  Examples
72
75
  --------
73
76
  >>> format_plot_text("time (s)")
74
77
  'Time (s)'
75
-
78
+
76
79
  >>> format_plot_text("voltage [V]", unit_style="brackets")
77
80
  'Voltage [V]'
78
-
81
+
79
82
  >>> format_plot_text("frequency in Hz", unit_style="auto")
80
83
  'Frequency (Hz)'
81
-
84
+
82
85
  >>> format_plot_text("signal_power_db")
83
86
  'Signal Power Db'
84
-
87
+
85
88
  >>> format_plot_text(r"$\alpha$ decay") # Falls back if LaTeX fails
86
89
  'α decay'
87
-
90
+
88
91
  Notes
89
92
  -----
90
- If LaTeX rendering fails, this function automatically falls back to
93
+ If LaTeX rendering fails, this function automatically falls back to
91
94
  mathtext or unicode alternatives while preserving scientific formatting.
92
95
  """
93
96
  if not text or not isinstance(text, str):
94
97
  return text
95
-
98
+
96
99
  # Handle LaTeX math sections (preserve them)
97
100
  latex_sections = []
98
101
  text_working = text
99
-
102
+
100
103
  if latex_math:
101
104
  # Extract and preserve LaTeX math
102
- latex_pattern = r'\$[^$]+\$'
105
+ latex_pattern = r"\$[^$]+\$"
103
106
  latex_matches = re.findall(latex_pattern, text)
104
107
  for i, match in enumerate(latex_matches):
105
108
  placeholder = f"__LATEX_{i}__"
106
109
  latex_sections.append(match)
107
110
  text_working = text_working.replace(match, placeholder, 1)
108
-
111
+
109
112
  # Replace underscores with spaces (before unit formatting)
110
113
  if replace_underscores:
111
114
  text_working = _replace_underscores(text_working)
112
-
115
+
113
116
  # Format units
114
117
  text_working = _format_units(text_working, unit_style)
115
-
118
+
116
119
  # Capitalize first letter (excluding LaTeX)
117
120
  if capitalize:
118
121
  text_working = _capitalize_text(text_working)
119
-
122
+
120
123
  # Handle scientific notation
121
124
  if scientific_notation:
122
125
  text_working = _format_scientific_notation(text_working)
123
-
126
+
124
127
  # Restore LaTeX sections with fallback handling
125
128
  for i, latex_section in enumerate(latex_sections):
126
129
  placeholder = f"__LATEX_{i}__"
@@ -130,7 +133,7 @@ def format_plot_text(
130
133
  text_working = text_working.replace(placeholder, safe_latex)
131
134
  else:
132
135
  text_working = text_working.replace(placeholder, latex_section)
133
-
136
+
134
137
  return text_working
135
138
 
136
139
 
@@ -142,11 +145,11 @@ def format_axis_label(
142
145
  capitalize: bool = True,
143
146
  latex_math: bool = True,
144
147
  enable_fallback: bool = True,
145
- replace_underscores: bool = True
148
+ replace_underscores: bool = True,
146
149
  ) -> str:
147
150
  """
148
151
  Format axis labels with proper unit handling.
149
-
152
+
150
153
  Parameters
151
154
  ----------
152
155
  label : str
@@ -163,23 +166,23 @@ def format_axis_label(
163
166
  Whether to enable LaTeX fallback mechanisms, by default True
164
167
  replace_underscores : bool, optional
165
168
  Whether to replace underscores with spaces, by default True
166
-
169
+
167
170
  Returns
168
171
  -------
169
172
  str
170
173
  Formatted axis label with automatic LaTeX fallback
171
-
174
+
172
175
  Examples
173
176
  --------
174
177
  >>> format_axis_label("time", "s")
175
178
  'Time (s)'
176
-
179
+
177
180
  >>> format_axis_label("voltage", "V", unit_style="brackets")
178
181
  'Voltage [V]'
179
-
182
+
180
183
  >>> format_axis_label("temperature", "°C")
181
184
  'Temperature (°C)'
182
-
185
+
183
186
  >>> format_axis_label("signal_power", "dB")
184
187
  'Signal Power (dB)'
185
188
  """
@@ -190,8 +193,16 @@ def format_axis_label(
190
193
  full_text = f"{label} ({unit})"
191
194
  else:
192
195
  full_text = label
193
-
194
- return format_plot_text(full_text, capitalize, unit_style, latex_math, scientific_notation=True, enable_fallback=enable_fallback, replace_underscores=replace_underscores)
196
+
197
+ return format_plot_text(
198
+ full_text,
199
+ capitalize,
200
+ unit_style,
201
+ latex_math,
202
+ scientific_notation=True,
203
+ enable_fallback=enable_fallback,
204
+ replace_underscores=replace_underscores,
205
+ )
195
206
 
196
207
 
197
208
  @latex_fallback_decorator(fallback_strategy="auto", preserve_math=True)
@@ -201,11 +212,11 @@ def format_title(
201
212
  capitalize: bool = True,
202
213
  latex_math: bool = True,
203
214
  enable_fallback: bool = True,
204
- replace_underscores: bool = True
215
+ replace_underscores: bool = True,
205
216
  ) -> str:
206
217
  """
207
218
  Format plot titles with proper conventions.
208
-
219
+
209
220
  Parameters
210
221
  ----------
211
222
  title : str
@@ -220,44 +231,50 @@ def format_title(
220
231
  Whether to enable LaTeX fallback mechanisms, by default True
221
232
  replace_underscores : bool, optional
222
233
  Whether to replace underscores with spaces, by default True
223
-
234
+
224
235
  Returns
225
236
  -------
226
237
  str
227
238
  Formatted title with automatic LaTeX fallback
228
-
239
+
229
240
  Examples
230
241
  --------
231
242
  >>> format_title("neural spike analysis")
232
243
  'Neural Spike Analysis'
233
-
244
+
234
245
  >>> format_title("data analysis", "preliminary results")
235
246
  'Data Analysis\\nPreliminary Results'
236
-
247
+
237
248
  >>> format_title("signal_processing_results")
238
249
  'Signal Processing Results'
239
250
  """
240
- formatted_title = format_plot_text(title, capitalize, latex_math=latex_math,
241
- enable_fallback=enable_fallback,
242
- replace_underscores=replace_underscores)
243
-
251
+ formatted_title = format_plot_text(
252
+ title,
253
+ capitalize,
254
+ latex_math=latex_math,
255
+ enable_fallback=enable_fallback,
256
+ replace_underscores=replace_underscores,
257
+ )
258
+
244
259
  if subtitle:
245
- formatted_subtitle = format_plot_text(subtitle, capitalize, latex_math=latex_math,
246
- enable_fallback=enable_fallback,
247
- replace_underscores=replace_underscores)
260
+ formatted_subtitle = format_plot_text(
261
+ subtitle,
262
+ capitalize,
263
+ latex_math=latex_math,
264
+ enable_fallback=enable_fallback,
265
+ replace_underscores=replace_underscores,
266
+ )
248
267
  return f"{formatted_title}\\n{formatted_subtitle}"
249
-
268
+
250
269
  return formatted_title
251
270
 
252
271
 
253
272
  def check_unit_consistency(
254
- x_unit: Optional[str] = None,
255
- y_unit: Optional[str] = None,
256
- operation: str = "none"
273
+ x_unit: Optional[str] = None, y_unit: Optional[str] = None, operation: str = "none"
257
274
  ) -> Tuple[bool, str]:
258
275
  """
259
276
  Check unit consistency for mathematical operations.
260
-
277
+
261
278
  Parameters
262
279
  ----------
263
280
  x_unit : Optional[str], optional
@@ -266,42 +283,42 @@ def check_unit_consistency(
266
283
  Y-axis unit, by default None
267
284
  operation : str, optional
268
285
  Mathematical operation: "add", "subtract", "multiply", "divide", "none", by default "none"
269
-
286
+
270
287
  Returns
271
288
  -------
272
289
  Tuple[bool, str]
273
290
  (is_consistent, expected_result_unit)
274
-
291
+
275
292
  Examples
276
293
  --------
277
294
  >>> check_unit_consistency("m", "s", "divide")
278
295
  (True, 'm/s')
279
-
296
+
280
297
  >>> check_unit_consistency("m", "m", "add")
281
298
  (True, 'm')
282
-
299
+
283
300
  >>> check_unit_consistency("m", "kg", "add")
284
301
  (False, 'Units incompatible for addition')
285
302
  """
286
303
  if not x_unit or not y_unit:
287
304
  return True, x_unit or y_unit or ""
288
-
305
+
289
306
  # Normalize units
290
307
  x_norm = _normalize_unit(x_unit)
291
308
  y_norm = _normalize_unit(y_unit)
292
-
309
+
293
310
  if operation in ["add", "subtract"]:
294
311
  if x_norm == y_norm:
295
312
  return True, x_unit
296
313
  else:
297
314
  return False, f"Units incompatible for {operation}"
298
-
315
+
299
316
  elif operation == "multiply":
300
317
  if x_norm == "1" or y_norm == "1": # dimensionless
301
318
  return True, x_unit if x_norm != "1" else y_unit
302
319
  else:
303
320
  return True, f"{x_unit}·{y_unit}"
304
-
321
+
305
322
  elif operation == "divide":
306
323
  if y_norm == "1": # dividing by dimensionless
307
324
  return True, x_unit
@@ -309,7 +326,7 @@ def check_unit_consistency(
309
326
  return True, "1" # dimensionless
310
327
  else:
311
328
  return True, f"{x_unit}/{y_unit}"
312
-
329
+
313
330
  return True, ""
314
331
 
315
332
 
@@ -319,26 +336,26 @@ def _format_units(text: str, unit_style: str) -> str:
319
336
  # Auto-detect and standardize to parentheses
320
337
  # Look for common unit patterns
321
338
  unit_patterns = [
322
- r'\s+in\s+([A-Za-z°µ²³⁻⁺]+)', # "in Hz", "in μV", etc.
323
- r'\s+\[([^\]]+)\]', # [unit]
324
- r'\s+\(([^)]+)\)', # (unit)
339
+ r"\s+in\s+([A-Za-z°µ²³⁻⁺]+)", # "in Hz", "in μV", etc.
340
+ r"\s+\[([^\]]+)\]", # [unit]
341
+ r"\s+\(([^)]+)\)", # (unit)
325
342
  ]
326
-
343
+
327
344
  for pattern in unit_patterns:
328
345
  match = re.search(pattern, text)
329
346
  if match:
330
347
  unit = match.group(1)
331
348
  # Replace with standardized format
332
- text = re.sub(pattern, f' ({unit})', text)
349
+ text = re.sub(pattern, f" ({unit})", text)
333
350
  break
334
-
351
+
335
352
  elif unit_style == "brackets":
336
353
  # Convert parentheses to brackets
337
- text = re.sub(r'\s*\(([^)]+)\)', r' [\1]', text)
338
-
354
+ text = re.sub(r"\s*\(([^)]+)\)", r" [\1]", text)
355
+
339
356
  # Clean up multiple spaces
340
- text = re.sub(r'\s+', ' ', text).strip()
341
-
357
+ text = re.sub(r"\s+", " ", text).strip()
358
+
342
359
  return text
343
360
 
344
361
 
@@ -346,26 +363,26 @@ def _capitalize_text(text: str) -> str:
346
363
  """Capitalize the first letter of text, preserving units in parentheses/brackets."""
347
364
  if not text:
348
365
  return text
349
-
366
+
350
367
  # Preserve content in parentheses and brackets
351
368
  preserved_sections = []
352
-
369
+
353
370
  # Find and preserve parentheses content
354
- paren_pattern = r'(\([^)]+\))'
371
+ paren_pattern = r"(\([^)]+\))"
355
372
  paren_matches = re.findall(paren_pattern, text)
356
373
  for i, match in enumerate(paren_matches):
357
374
  placeholder = f"__PAREN_{i}__"
358
375
  preserved_sections.append((placeholder, match))
359
376
  text = text.replace(match, placeholder, 1)
360
-
377
+
361
378
  # Find and preserve bracket content
362
- bracket_pattern = r'(\[[^\]]+\])'
379
+ bracket_pattern = r"(\[[^\]]+\])"
363
380
  bracket_matches = re.findall(bracket_pattern, text)
364
381
  for i, match in enumerate(bracket_matches):
365
382
  placeholder = f"__BRACKET_{i}__"
366
383
  preserved_sections.append((placeholder, match))
367
384
  text = text.replace(match, placeholder, 1)
368
-
385
+
369
386
  # Capitalize the first alphabetic character
370
387
  capitalized = False
371
388
  result = []
@@ -375,27 +392,27 @@ def _capitalize_text(text: str) -> str:
375
392
  capitalized = True
376
393
  else:
377
394
  result.append(char)
378
-
379
- text = ''.join(result)
380
-
395
+
396
+ text = "".join(result)
397
+
381
398
  # Restore preserved sections
382
399
  for placeholder, original in preserved_sections:
383
400
  text = text.replace(placeholder, original)
384
-
401
+
385
402
  return text
386
403
 
387
404
 
388
405
  def _format_scientific_notation(text: str) -> str:
389
406
  """Format scientific notation in text."""
390
407
  # Convert patterns like "1e-3" to "1×10⁻³" or LaTeX equivalent
391
- sci_pattern = r'(\d+\.?\d*)[eE]([-+]?\d+)'
392
-
408
+ sci_pattern = r"(\d+\.?\d*)[eE]([-+]?\d+)"
409
+
393
410
  def replace_sci(match):
394
411
  base = match.group(1)
395
412
  exp = match.group(2)
396
413
  # Use LaTeX format
397
414
  return f"{base}×10^{{{exp}}}"
398
-
415
+
399
416
  return re.sub(sci_pattern, replace_sci, text)
400
417
 
401
418
 
@@ -403,42 +420,80 @@ def _replace_underscores(text: str) -> str:
403
420
  """Replace underscores with spaces and apply proper word capitalization."""
404
421
  # First, preserve content in parentheses and brackets
405
422
  preserved_sections = []
406
-
423
+
407
424
  # Preserve parentheses content
408
- paren_pattern = r'(\([^)]+\))'
425
+ paren_pattern = r"(\([^)]+\))"
409
426
  paren_matches = re.findall(paren_pattern, text)
410
427
  for i, match in enumerate(paren_matches):
411
428
  placeholder = f"|||PAREN{i}|||"
412
429
  preserved_sections.append((placeholder, match))
413
430
  text = text.replace(match, placeholder, 1)
414
-
431
+
415
432
  # Preserve bracket content
416
- bracket_pattern = r'(\[[^\]]+\])'
433
+ bracket_pattern = r"(\[[^\]]+\])"
417
434
  bracket_matches = re.findall(bracket_pattern, text)
418
435
  for i, match in enumerate(bracket_matches):
419
436
  placeholder = f"|||BRACKET{i}|||"
420
437
  preserved_sections.append((placeholder, match))
421
438
  text = text.replace(match, placeholder, 1)
422
-
439
+
423
440
  # Replace underscores with spaces
424
- text_with_spaces = text.replace('_', ' ')
425
-
441
+ text_with_spaces = text.replace("_", " ")
442
+
426
443
  # Split by spaces for word processing
427
- words = text_with_spaces.split(' ')
428
-
444
+ words = text_with_spaces.split(" ")
445
+
429
446
  # Common units that should preserve their case
430
- common_units = {'Hz', 'kHz', 'MHz', 'GHz', 'V', 'mV', 'uV', 'μV', 'A', 'mA',
431
- 'μA', 'W', 'mW', 'dB', 'dBm', 's', 'ms', 'μs', 'ns', 'ps',
432
- 'K', 'C', 'F', 'rad', 'deg', 'm', 'cm', 'mm', 'μm', 'nm',
433
- 'kg', 'g', 'mg', 'μg', 'N', 'Pa', 'bar', 'psi', 'mol', 'M'}
434
-
447
+ common_units = {
448
+ "Hz",
449
+ "kHz",
450
+ "MHz",
451
+ "GHz",
452
+ "V",
453
+ "mV",
454
+ "uV",
455
+ "μV",
456
+ "A",
457
+ "mA",
458
+ "μA",
459
+ "W",
460
+ "mW",
461
+ "dB",
462
+ "dBm",
463
+ "s",
464
+ "ms",
465
+ "μs",
466
+ "ns",
467
+ "ps",
468
+ "K",
469
+ "C",
470
+ "F",
471
+ "rad",
472
+ "deg",
473
+ "m",
474
+ "cm",
475
+ "mm",
476
+ "μm",
477
+ "nm",
478
+ "kg",
479
+ "g",
480
+ "mg",
481
+ "μg",
482
+ "N",
483
+ "Pa",
484
+ "bar",
485
+ "psi",
486
+ "mol",
487
+ "M",
488
+ }
489
+
435
490
  # Process each word
436
491
  formatted_words = []
437
492
  for word in words:
438
493
  if not word: # Preserve empty strings (from consecutive underscores)
439
- formatted_words.append('')
494
+ formatted_words.append("")
440
495
  # Skip placeholders
441
- elif '|||' in word:
496
+ elif "|||" in word:
442
497
  formatted_words.append(word)
443
498
  # Check if word is a known unit
444
499
  elif word in common_units:
@@ -448,34 +503,48 @@ def _replace_underscores(text: str) -> str:
448
503
  formatted_words.append(word)
449
504
  # Capitalize first letter of each word
450
505
  else:
451
- formatted_words.append(word[0].upper() + word[1:].lower() if len(word) > 1 else word.upper())
452
-
506
+ formatted_words.append(
507
+ word[0].upper() + word[1:].lower() if len(word) > 1 else word.upper()
508
+ )
509
+
453
510
  # Join with spaces
454
- result = ' '.join(formatted_words)
455
-
511
+ result = " ".join(formatted_words)
512
+
456
513
  # Restore preserved sections
457
514
  for placeholder, original in preserved_sections:
458
515
  result = result.replace(placeholder, original)
459
-
516
+
460
517
  return result
461
518
 
462
519
 
463
520
  def _normalize_unit(unit: str) -> str:
464
521
  """Normalize unit string for comparison."""
465
522
  # Remove brackets/parentheses and normalize
466
- normalized = re.sub(r'[\[\]()]', '', unit).strip().lower()
467
-
523
+ normalized = re.sub(r"[\[\]()]", "", unit).strip().lower()
524
+
468
525
  # Handle common equivalent units
469
526
  equivalents = {
470
- 'sec': 's', 'second': 's', 'seconds': 's',
471
- 'volt': 'V', 'volts': 'V',
472
- 'amp': 'A', 'ampere': 'A', 'amps': 'A',
473
- 'meter': 'm', 'meters': 'm', 'metre': 'm', 'metres': 'm',
474
- 'gram': 'g', 'grams': 'g',
475
- 'hertz': 'Hz', 'hz': 'Hz',
476
- 'dimensionless': '1', 'unitless': '1', '': '1',
527
+ "sec": "s",
528
+ "second": "s",
529
+ "seconds": "s",
530
+ "volt": "V",
531
+ "volts": "V",
532
+ "amp": "A",
533
+ "ampere": "A",
534
+ "amps": "A",
535
+ "meter": "m",
536
+ "meters": "m",
537
+ "metre": "m",
538
+ "metres": "m",
539
+ "gram": "g",
540
+ "grams": "g",
541
+ "hertz": "Hz",
542
+ "hz": "Hz",
543
+ "dimensionless": "1",
544
+ "unitless": "1",
545
+ "": "1",
477
546
  }
478
-
547
+
479
548
  return equivalents.get(normalized, normalized)
480
549
 
481
550
 
@@ -495,4 +564,4 @@ def scientific_text(text: str, **kwargs) -> str:
495
564
  return format_plot_text(text, **kwargs)
496
565
 
497
566
 
498
- # EOF
567
+ # EOF