scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1091) hide show
  1. scitex/__init__.py +19 -8
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/benchmark/__init__.py +15 -25
  66. scitex/benchmark/benchmark.py +124 -117
  67. scitex/benchmark/monitor.py +117 -107
  68. scitex/benchmark/profiler.py +61 -58
  69. scitex/bridge/__init__.py +110 -0
  70. scitex/bridge/_helpers.py +149 -0
  71. scitex/bridge/_plt_vis.py +529 -0
  72. scitex/bridge/_protocol.py +283 -0
  73. scitex/bridge/_stats_plt.py +261 -0
  74. scitex/bridge/_stats_vis.py +265 -0
  75. scitex/browser/__init__.py +0 -2
  76. scitex/browser/auth/__init__.py +0 -0
  77. scitex/browser/auth/google.py +16 -11
  78. scitex/browser/automation/CookieHandler.py +2 -3
  79. scitex/browser/collaboration/__init__.py +3 -0
  80. scitex/browser/collaboration/auth_helpers.py +3 -1
  81. scitex/browser/collaboration/collaborative_agent.py +2 -0
  82. scitex/browser/collaboration/interactive_panel.py +2 -2
  83. scitex/browser/collaboration/shared_session.py +20 -11
  84. scitex/browser/collaboration/standard_interactions.py +1 -0
  85. scitex/browser/core/BrowserMixin.py +12 -30
  86. scitex/browser/core/ChromeProfileManager.py +9 -24
  87. scitex/browser/debugging/_browser_logger.py +15 -25
  88. scitex/browser/debugging/_failure_capture.py +9 -2
  89. scitex/browser/debugging/_highlight_element.py +15 -6
  90. scitex/browser/debugging/_show_grid.py +5 -6
  91. scitex/browser/debugging/_sync_session.py +4 -3
  92. scitex/browser/debugging/_test_monitor.py +14 -5
  93. scitex/browser/debugging/_visual_cursor.py +46 -35
  94. scitex/browser/interaction/click_center.py +4 -3
  95. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  96. scitex/browser/interaction/close_popups.py +79 -66
  97. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  98. scitex/browser/pdf/__init__.py +3 -1
  99. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  100. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  101. scitex/browser/remote/CaptchaHandler.py +109 -96
  102. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  103. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  104. scitex/browser/stealth/HumanBehavior.py +4 -9
  105. scitex/browser/stealth/StealthManager.py +11 -26
  106. scitex/capture/__init__.py +17 -17
  107. scitex/capture/__main__.py +2 -3
  108. scitex/capture/capture.py +23 -51
  109. scitex/capture/cli.py +14 -39
  110. scitex/capture/gif.py +5 -9
  111. scitex/capture/mcp_server.py +7 -20
  112. scitex/capture/session.py +4 -3
  113. scitex/capture/utils.py +18 -53
  114. scitex/cli/__init__.py +1 -1
  115. scitex/cli/cloud.py +158 -116
  116. scitex/cli/config.py +224 -0
  117. scitex/cli/main.py +41 -40
  118. scitex/cli/scholar.py +60 -27
  119. scitex/cli/security.py +14 -20
  120. scitex/cli/web.py +87 -90
  121. scitex/cli/writer.py +51 -45
  122. scitex/cloud/__init__.py +14 -11
  123. scitex/cloud/_matplotlib_hook.py +6 -6
  124. scitex/config/README.md +313 -0
  125. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  126. scitex/config/_ScitexConfig.py +319 -0
  127. scitex/config/__init__.py +41 -9
  128. scitex/config/_paths.py +325 -0
  129. scitex/config/default.yaml +81 -0
  130. scitex/context/_suppress_output.py +2 -3
  131. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  132. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  133. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  134. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  135. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  136. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  137. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  138. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  139. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  140. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  141. scitex/db/_BaseMixins/__init__.py +1 -1
  142. scitex/db/__init__.py +9 -1
  143. scitex/db/__main__.py +8 -21
  144. scitex/db/_check_health.py +15 -31
  145. scitex/db/_delete_duplicates.py +7 -4
  146. scitex/db/_inspect.py +22 -38
  147. scitex/db/_inspect_optimized.py +89 -85
  148. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  149. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  150. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  151. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  152. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  153. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  154. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  155. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  156. scitex/db/_postgresql/__init__.py +1 -1
  157. scitex/db/_sqlite3/_SQLite3.py +2 -4
  158. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  159. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  160. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  161. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  162. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  163. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  164. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  165. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  166. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  167. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  169. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  170. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  171. scitex/db/_sqlite3/__init__.py +1 -1
  172. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  173. scitex/decorators/__init__.py +29 -4
  174. scitex/decorators/_auto_order.py +43 -43
  175. scitex/decorators/_batch_fn.py +12 -6
  176. scitex/decorators/_cache_disk.py +8 -9
  177. scitex/decorators/_cache_disk_async.py +8 -7
  178. scitex/decorators/_combined.py +19 -13
  179. scitex/decorators/_converters.py +16 -3
  180. scitex/decorators/_deprecated.py +32 -22
  181. scitex/decorators/_numpy_fn.py +18 -4
  182. scitex/decorators/_pandas_fn.py +17 -5
  183. scitex/decorators/_signal_fn.py +17 -3
  184. scitex/decorators/_torch_fn.py +32 -15
  185. scitex/decorators/_xarray_fn.py +23 -9
  186. scitex/dev/_analyze_code_flow.py +0 -2
  187. scitex/dict/_DotDict.py +15 -19
  188. scitex/dict/_flatten.py +1 -0
  189. scitex/dict/_listed_dict.py +1 -0
  190. scitex/dict/_pop_keys.py +1 -0
  191. scitex/dict/_replace.py +1 -0
  192. scitex/dict/_safe_merge.py +1 -0
  193. scitex/dict/_to_str.py +2 -3
  194. scitex/dsp/__init__.py +13 -4
  195. scitex/dsp/_crop.py +3 -1
  196. scitex/dsp/_detect_ripples.py +3 -1
  197. scitex/dsp/_modulation_index.py +3 -1
  198. scitex/dsp/_time.py +3 -1
  199. scitex/dsp/_wavelet.py +0 -1
  200. scitex/dsp/example.py +0 -5
  201. scitex/dsp/filt.py +4 -0
  202. scitex/dsp/utils/__init__.py +4 -1
  203. scitex/dsp/utils/pac.py +3 -3
  204. scitex/dt/_normalize_timestamp.py +4 -1
  205. scitex/errors.py +3 -6
  206. scitex/etc/__init__.py +1 -1
  207. scitex/gen/_DimHandler.py +6 -6
  208. scitex/gen/__init__.py +5 -1
  209. scitex/gen/_deprecated_close.py +1 -0
  210. scitex/gen/_deprecated_start.py +5 -3
  211. scitex/gen/_detect_environment.py +44 -41
  212. scitex/gen/_detect_notebook_path.py +51 -47
  213. scitex/gen/_embed.py +1 -1
  214. scitex/gen/_get_notebook_path.py +81 -62
  215. scitex/gen/_inspect_module.py +0 -1
  216. scitex/gen/_norm.py +16 -7
  217. scitex/gen/_norm_cache.py +78 -65
  218. scitex/gen/_print_config.py +0 -3
  219. scitex/gen/_src.py +2 -3
  220. scitex/gen/_title_case.py +3 -2
  221. scitex/gen/_to_even.py +8 -8
  222. scitex/gen/_transpose.py +3 -3
  223. scitex/gen/misc.py +0 -3
  224. scitex/gists/_SigMacro_processFigure_S.py +2 -2
  225. scitex/gists/_SigMacro_toBlue.py +2 -2
  226. scitex/gists/__init__.py +4 -1
  227. scitex/git/_branch.py +19 -11
  228. scitex/git/_clone.py +23 -15
  229. scitex/git/_commit.py +10 -12
  230. scitex/git/_init.py +15 -38
  231. scitex/git/_remote.py +9 -3
  232. scitex/git/_result.py +3 -0
  233. scitex/git/_retry.py +2 -5
  234. scitex/git/_types.py +4 -0
  235. scitex/git/_validation.py +8 -8
  236. scitex/git/_workflow.py +4 -4
  237. scitex/io/__init__.py +2 -1
  238. scitex/io/_glob.py +2 -2
  239. scitex/io/_json2md.py +3 -3
  240. scitex/io/_load.py +6 -8
  241. scitex/io/_load_cache.py +71 -71
  242. scitex/io/_load_configs.py +2 -3
  243. scitex/io/_load_modules/_H5Explorer.py +6 -12
  244. scitex/io/_load_modules/_ZarrExplorer.py +3 -3
  245. scitex/io/_load_modules/_bibtex.py +62 -63
  246. scitex/io/_load_modules/_canvas.py +4 -9
  247. scitex/io/_load_modules/_catboost.py +7 -2
  248. scitex/io/_load_modules/_hdf5.py +2 -0
  249. scitex/io/_load_modules/_image.py +5 -1
  250. scitex/io/_load_modules/_matlab.py +3 -1
  251. scitex/io/_load_modules/_optuna.py +0 -1
  252. scitex/io/_load_modules/_pdf.py +38 -29
  253. scitex/io/_load_modules/_sqlite3.py +1 -0
  254. scitex/io/_load_modules/_txt.py +2 -0
  255. scitex/io/_load_modules/_xml.py +9 -9
  256. scitex/io/_load_modules/_zarr.py +12 -10
  257. scitex/io/_metadata.py +76 -37
  258. scitex/io/_qr_utils.py +18 -13
  259. scitex/io/_save.py +220 -63
  260. scitex/io/_save_modules/__init__.py +7 -2
  261. scitex/io/_save_modules/_bibtex.py +66 -61
  262. scitex/io/_save_modules/_canvas.py +5 -6
  263. scitex/io/_save_modules/_catboost.py +2 -2
  264. scitex/io/_save_modules/_csv.py +4 -4
  265. scitex/io/_save_modules/_excel.py +5 -9
  266. scitex/io/_save_modules/_hdf5.py +9 -21
  267. scitex/io/_save_modules/_html.py +5 -5
  268. scitex/io/_save_modules/_image.py +105 -8
  269. scitex/io/_save_modules/_joblib.py +2 -2
  270. scitex/io/_save_modules/_json.py +51 -6
  271. scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
  272. scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
  273. scitex/io/_save_modules/_matlab.py +2 -2
  274. scitex/io/_save_modules/_numpy.py +6 -8
  275. scitex/io/_save_modules/_pickle.py +4 -4
  276. scitex/io/_save_modules/_plotly.py +3 -3
  277. scitex/io/_save_modules/_tex.py +23 -25
  278. scitex/io/_save_modules/_text.py +2 -2
  279. scitex/io/_save_modules/_yaml.py +9 -9
  280. scitex/io/_save_modules/_zarr.py +15 -15
  281. scitex/io/utils/__init__.py +2 -1
  282. scitex/io/utils/h5_to_zarr.py +173 -155
  283. scitex/linalg/__init__.py +1 -1
  284. scitex/linalg/_geometric_median.py +4 -3
  285. scitex/logging/_Tee.py +5 -7
  286. scitex/logging/__init__.py +18 -19
  287. scitex/logging/_config.py +4 -1
  288. scitex/logging/_context.py +6 -5
  289. scitex/logging/_formatters.py +2 -3
  290. scitex/logging/_handlers.py +19 -20
  291. scitex/logging/_levels.py +9 -17
  292. scitex/logging/_logger.py +74 -15
  293. scitex/logging/_print_capture.py +17 -17
  294. scitex/nn/_BNet.py +1 -3
  295. scitex/nn/_Filters.py +6 -2
  296. scitex/nn/_ModulationIndex.py +3 -1
  297. scitex/nn/_PAC.py +3 -2
  298. scitex/nn/_PSD.py +0 -1
  299. scitex/nn/__init__.py +16 -3
  300. scitex/path/_clean.py +10 -8
  301. scitex/path/_find.py +1 -1
  302. scitex/path/_get_spath.py +1 -2
  303. scitex/path/_mk_spath.py +1 -1
  304. scitex/path/_symlink.py +5 -10
  305. scitex/pd/__init__.py +4 -1
  306. scitex/pd/_force_df.py +24 -24
  307. scitex/pd/_get_unique.py +1 -0
  308. scitex/pd/_merge_columns.py +1 -1
  309. scitex/pd/_round.py +11 -7
  310. scitex/pd/_to_xy.py +0 -1
  311. scitex/plt/REQUESTS.md +191 -0
  312. scitex/plt/__init__.py +185 -87
  313. scitex/plt/_subplots/_AxesWrapper.py +22 -6
  314. scitex/plt/_subplots/_AxisWrapper.py +100 -39
  315. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
  316. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
  317. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
  318. scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
  319. scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
  320. scitex/plt/_subplots/_FigWrapper.py +93 -60
  321. scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
  322. scitex/plt/_subplots/__init__.py +10 -0
  323. scitex/plt/_subplots/_export_as_csv.py +89 -47
  324. scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
  325. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
  326. scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
  327. scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
  328. scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
  329. scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
  330. scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
  331. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
  332. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
  333. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
  334. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
  335. scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
  336. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
  337. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
  338. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
  339. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
  340. scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
  341. scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
  342. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
  343. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
  344. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
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  891. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  892. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  893. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  894. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  895. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  896. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  897. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  898. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  899. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  900. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  901. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  902. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  903. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  904. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  905. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  906. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  907. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  908. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  909. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  910. scitex/scholar/utils/validation/__init__.py +0 -0
  911. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  912. scitex/scholar/zotero/__init__.py +1 -1
  913. scitex/security/cli.py +7 -20
  914. scitex/security/github.py +45 -32
  915. scitex/session/__init__.py +8 -9
  916. scitex/session/_decorator.py +49 -42
  917. scitex/session/_lifecycle.py +39 -39
  918. scitex/session/_manager.py +24 -20
  919. scitex/sh/__init__.py +4 -3
  920. scitex/sh/_execute.py +10 -7
  921. scitex/sh/_security.py +3 -3
  922. scitex/sh/_types.py +2 -3
  923. scitex/stats/__init__.py +57 -6
  924. scitex/stats/_schema.py +42 -569
  925. scitex/stats/auto/__init__.py +188 -0
  926. scitex/stats/auto/_context.py +331 -0
  927. scitex/stats/auto/_formatting.py +679 -0
  928. scitex/stats/auto/_rules.py +901 -0
  929. scitex/stats/auto/_selector.py +554 -0
  930. scitex/stats/auto/_styles.py +721 -0
  931. scitex/stats/correct/__init__.py +4 -4
  932. scitex/stats/correct/_correct_bonferroni.py +43 -34
  933. scitex/stats/correct/_correct_fdr.py +14 -40
  934. scitex/stats/correct/_correct_fdr_.py +39 -46
  935. scitex/stats/correct/_correct_holm.py +14 -32
  936. scitex/stats/correct/_correct_sidak.py +36 -21
  937. scitex/stats/descriptive/_circular.py +20 -21
  938. scitex/stats/descriptive/_describe.py +19 -5
  939. scitex/stats/descriptive/_nan.py +5 -7
  940. scitex/stats/descriptive/_real.py +4 -3
  941. scitex/stats/effect_sizes/__init__.py +10 -11
  942. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  943. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  944. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  945. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  946. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  947. scitex/stats/posthoc/__init__.py +3 -3
  948. scitex/stats/posthoc/_dunnett.py +75 -55
  949. scitex/stats/posthoc/_games_howell.py +61 -43
  950. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  951. scitex/stats/power/__init__.py +2 -2
  952. scitex/stats/power/_power.py +56 -56
  953. scitex/stats/tests/__init__.py +1 -1
  954. scitex/stats/tests/correlation/__init__.py +1 -1
  955. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  956. scitex/stats/utils/__init__.py +14 -17
  957. scitex/stats/utils/_effect_size.py +85 -78
  958. scitex/stats/utils/_formatters.py +49 -43
  959. scitex/stats/utils/_normalizers.py +7 -14
  960. scitex/stats/utils/_power.py +56 -56
  961. scitex/str/__init__.py +1 -0
  962. scitex/str/_clean_path.py +3 -3
  963. scitex/str/_factor_out_digits.py +86 -58
  964. scitex/str/_format_plot_text.py +180 -111
  965. scitex/str/_latex.py +19 -19
  966. scitex/str/_latex_fallback.py +9 -10
  967. scitex/str/_parse.py +3 -6
  968. scitex/str/_print_debug.py +13 -13
  969. scitex/str/_printc.py +2 -0
  970. scitex/str/_search.py +3 -3
  971. scitex/template/.legacy/_clone_project.py +9 -13
  972. scitex/template/__init__.py +10 -2
  973. scitex/template/_clone_project.py +7 -2
  974. scitex/template/_copy.py +1 -0
  975. scitex/template/_customize.py +3 -6
  976. scitex/template/_git_strategy.py +2 -3
  977. scitex/template/_rename.py +1 -0
  978. scitex/template/clone_pip_project.py +6 -7
  979. scitex/template/clone_research.py +7 -10
  980. scitex/template/clone_singularity.py +6 -7
  981. scitex/template/clone_writer_directory.py +6 -7
  982. scitex/tex/_preview.py +26 -11
  983. scitex/tex/_to_vec.py +10 -7
  984. scitex/torch/__init__.py +11 -1
  985. scitex/types/_ArrayLike.py +2 -0
  986. scitex/types/_is_listed_X.py +3 -3
  987. scitex/units.py +110 -77
  988. scitex/utils/_compress_hdf5.py +3 -3
  989. scitex/utils/_email.py +8 -4
  990. scitex/utils/_notify.py +14 -8
  991. scitex/utils/_search.py +6 -6
  992. scitex/utils/_verify_scitex_format.py +17 -42
  993. scitex/utils/_verify_scitex_format_v01.py +12 -34
  994. scitex/utils/template.py +4 -3
  995. scitex/vis/__init__.py +0 -0
  996. scitex/vis/backend/__init__.py +3 -3
  997. scitex/vis/backend/{export.py → _export.py} +1 -1
  998. scitex/vis/backend/{parser.py → _parser.py} +1 -3
  999. scitex/vis/backend/{render.py → _render.py} +1 -1
  1000. scitex/vis/canvas.py +15 -3
  1001. scitex/vis/editor/__init__.py +0 -0
  1002. scitex/vis/editor/_dearpygui_editor.py +450 -304
  1003. scitex/vis/editor/_defaults.py +114 -123
  1004. scitex/vis/editor/_edit.py +38 -26
  1005. scitex/vis/editor/_flask_editor.py +8 -8
  1006. scitex/vis/editor/_mpl_editor.py +63 -48
  1007. scitex/vis/editor/_qt_editor.py +210 -159
  1008. scitex/vis/editor/_tkinter_editor.py +146 -89
  1009. scitex/vis/editor/flask_editor/__init__.py +10 -10
  1010. scitex/vis/editor/flask_editor/_bbox.py +529 -0
  1011. scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
  1012. scitex/vis/editor/flask_editor/_plotter.py +567 -0
  1013. scitex/vis/editor/flask_editor/_renderer.py +393 -0
  1014. scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
  1015. scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
  1016. scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
  1017. scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
  1018. scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
  1019. scitex/vis/io/__init__.py +5 -5
  1020. scitex/vis/io/{canvas.py → _canvas.py} +8 -4
  1021. scitex/vis/io/{data.py → _data.py} +13 -9
  1022. scitex/vis/io/{directory.py → _directory.py} +7 -4
  1023. scitex/vis/io/{export.py → _export.py} +15 -12
  1024. scitex/vis/io/{load.py → _load.py} +1 -1
  1025. scitex/vis/io/{panel.py → _panel.py} +21 -13
  1026. scitex/vis/io/{save.py → _save.py} +0 -0
  1027. scitex/vis/model/__init__.py +7 -7
  1028. scitex/vis/model/{annotations.py → _annotations.py} +2 -4
  1029. scitex/vis/model/{axes.py → _axes.py} +1 -1
  1030. scitex/vis/model/{figure.py → _figure.py} +0 -0
  1031. scitex/vis/model/{guides.py → _guides.py} +1 -1
  1032. scitex/vis/model/{plot.py → _plot.py} +2 -4
  1033. scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
  1034. scitex/vis/model/{styles.py → _styles.py} +0 -0
  1035. scitex/vis/utils/__init__.py +2 -2
  1036. scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
  1037. scitex/vis/utils/{validate.py → _validate.py} +3 -9
  1038. scitex/web/__init__.py +7 -1
  1039. scitex/web/_scraping.py +54 -38
  1040. scitex/web/_search_pubmed.py +30 -14
  1041. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1042. scitex/writer/.legacy/_compile.py +18 -28
  1043. scitex/writer/Writer.py +8 -21
  1044. scitex/writer/__init__.py +11 -11
  1045. scitex/writer/_clone_writer_project.py +2 -6
  1046. scitex/writer/_compile/__init__.py +1 -0
  1047. scitex/writer/_compile/_parser.py +1 -0
  1048. scitex/writer/_compile/_runner.py +35 -38
  1049. scitex/writer/_compile/_validator.py +1 -0
  1050. scitex/writer/_compile/manuscript.py +1 -0
  1051. scitex/writer/_compile/revision.py +1 -0
  1052. scitex/writer/_compile/supplementary.py +1 -0
  1053. scitex/writer/_compile_async.py +5 -12
  1054. scitex/writer/_project/__init__.py +1 -0
  1055. scitex/writer/_project/_create.py +10 -25
  1056. scitex/writer/_project/_trees.py +4 -9
  1057. scitex/writer/_project/_validate.py +2 -3
  1058. scitex/writer/_validate_tree_structures.py +7 -18
  1059. scitex/writer/dataclasses/__init__.py +8 -10
  1060. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1061. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1062. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1063. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1064. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1065. scitex/writer/dataclasses/core/_Document.py +2 -3
  1066. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1067. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1068. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1069. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1070. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1071. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1072. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1073. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1074. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1075. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1076. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1077. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1078. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1079. scitex/writer/utils/_parse_script_args.py +20 -23
  1080. scitex/writer/utils/_watch.py +5 -5
  1081. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
  1082. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
  1083. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1084. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1085. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1086. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1087. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1088. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1089. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
  1090. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
  1091. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
@@ -1,13 +1,12 @@
1
1
  #!/usr/bin/env python3
2
2
  # -*- coding: utf-8 -*-
3
- # Timestamp: "2025-08-22 18:01:49 (ywatanabe)"
4
- # File: /home/ywatanabe/proj/SciTeX-Code/src/scitex/scholar/externals/impact_factor/src/impact_factor/core/cache_manager.py
3
+ # Timestamp: "2025-12-09 (ywatanabe)"
4
+ # File: /home/ywatanabe/proj/scitex-code/src/scitex/scholar/impact_factor/estimation/core/cache_manager.py
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./impact_factor/core/cache_manager.py"
10
- )
8
+
9
+ __FILE__ = "./impact_factor/core/cache_manager.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
  import json
@@ -18,6 +17,7 @@ from pathlib import Path
18
17
  from typing import Any, Dict, List, Optional, Union
19
18
  from datetime import datetime, timedelta
20
19
 
20
+ from scitex.config import get_paths
21
21
  from scitex.logging import getLogger
22
22
 
23
23
  logger = getLogger(__name__)
@@ -26,7 +26,7 @@ logger = getLogger(__name__)
26
26
  class CacheManager:
27
27
  """
28
28
  Efficient caching system for impact factor calculations and API responses
29
-
29
+
30
30
  Features:
31
31
  - JSON and pickle serialization support
32
32
  - Configurable expiration times
@@ -35,220 +35,219 @@ class CacheManager:
35
35
  - Hierarchical cache organization
36
36
  - Cache statistics and monitoring
37
37
  """
38
-
38
+
39
39
  def __init__(
40
- self,
40
+ self,
41
41
  cache_dir: Optional[str] = None,
42
42
  default_ttl: int = 3600 * 24 * 7, # 7 days
43
43
  max_cache_size_mb: int = 100,
44
- cleanup_on_start: bool = True
44
+ cleanup_on_start: bool = True,
45
45
  ):
46
46
  """
47
47
  Initialize cache manager
48
-
48
+
49
49
  Args:
50
- cache_dir: Directory for cache storage (default: ~/.scitex/impact_factor_cache)
50
+ cache_dir: Directory for cache storage (default: $SCITEX_DIR/impact_factor_cache)
51
51
  default_ttl: Default time-to-live in seconds
52
52
  max_cache_size_mb: Maximum cache size in MB
53
53
  cleanup_on_start: Whether to cleanup expired entries on initialization
54
54
  """
55
- if cache_dir is None:
56
- cache_dir = Path.home() / ".scitex" / "impact_factor_cache"
57
-
58
- self.cache_dir = Path(cache_dir)
55
+ self.cache_dir = get_paths().resolve("impact_factor_cache", cache_dir)
59
56
  self.cache_dir.mkdir(parents=True, exist_ok=True)
60
-
57
+
61
58
  self.default_ttl = default_ttl
62
59
  self.max_cache_size_bytes = max_cache_size_mb * 1024 * 1024
63
-
60
+
64
61
  # Create subdirectories for different data types
65
62
  self.subdirs = {
66
- 'api_responses': self.cache_dir / 'api_responses',
67
- 'impact_factors': self.cache_dir / 'impact_factors',
68
- 'journal_data': self.cache_dir / 'journal_data',
69
- 'search_results': self.cache_dir / 'search_results'
63
+ "api_responses": self.cache_dir / "api_responses",
64
+ "impact_factors": self.cache_dir / "impact_factors",
65
+ "journal_data": self.cache_dir / "journal_data",
66
+ "search_results": self.cache_dir / "search_results",
70
67
  }
71
-
68
+
72
69
  for subdir in self.subdirs.values():
73
70
  subdir.mkdir(exist_ok=True)
74
-
71
+
75
72
  # Metadata file for cache tracking
76
- self.metadata_file = self.cache_dir / 'cache_metadata.json'
73
+ self.metadata_file = self.cache_dir / "cache_metadata.json"
77
74
  self.metadata = self._load_metadata()
78
-
75
+
79
76
  if cleanup_on_start:
80
77
  self.cleanup_expired()
81
-
78
+
82
79
  logger.info(f"Cache manager initialized at: {self.cache_dir}")
83
-
80
+
84
81
  def _load_metadata(self) -> Dict:
85
82
  """Load cache metadata from file"""
86
83
  if self.metadata_file.exists():
87
84
  try:
88
- with open(self.metadata_file, 'r') as f:
85
+ with open(self.metadata_file, "r") as f:
89
86
  return json.load(f)
90
87
  except Exception as e:
91
88
  logger.warning(f"Failed to load cache metadata: {e}")
92
-
89
+
93
90
  return {
94
- 'entries': {},
95
- 'created_at': datetime.now().isoformat(),
96
- 'last_cleanup': None,
97
- 'statistics': {
98
- 'total_gets': 0,
99
- 'cache_hits': 0,
100
- 'cache_misses': 0,
101
- 'total_sets': 0
102
- }
91
+ "entries": {},
92
+ "created_at": datetime.now().isoformat(),
93
+ "last_cleanup": None,
94
+ "statistics": {
95
+ "total_gets": 0,
96
+ "cache_hits": 0,
97
+ "cache_misses": 0,
98
+ "total_sets": 0,
99
+ },
103
100
  }
104
-
101
+
105
102
  def _save_metadata(self):
106
103
  """Save cache metadata to file"""
107
104
  try:
108
- with open(self.metadata_file, 'w') as f:
105
+ with open(self.metadata_file, "w") as f:
109
106
  json.dump(self.metadata, f, indent=2)
110
107
  except Exception as e:
111
108
  logger.error(f"Failed to save cache metadata: {e}")
112
-
109
+
113
110
  def _get_cache_key(self, key: str) -> str:
114
111
  """Generate a safe cache key hash"""
115
112
  return hashlib.md5(key.encode()).hexdigest()
116
-
117
- def _get_cache_path(self, cache_key: str, cache_type: str = 'api_responses') -> Path:
113
+
114
+ def _get_cache_path(
115
+ self, cache_key: str, cache_type: str = "api_responses"
116
+ ) -> Path:
118
117
  """Get full path for cache file"""
119
- subdir = self.subdirs.get(cache_type, self.subdirs['api_responses'])
118
+ subdir = self.subdirs.get(cache_type, self.subdirs["api_responses"])
120
119
  return subdir / f"{cache_key}.cache"
121
-
120
+
122
121
  def set(
123
- self,
124
- key: str,
125
- value: Any,
122
+ self,
123
+ key: str,
124
+ value: Any,
126
125
  ttl: Optional[int] = None,
127
- cache_type: str = 'api_responses',
128
- use_pickle: bool = False
126
+ cache_type: str = "api_responses",
127
+ use_pickle: bool = False,
129
128
  ) -> bool:
130
129
  """
131
130
  Store value in cache
132
-
131
+
133
132
  Args:
134
133
  key: Cache key
135
134
  value: Value to cache
136
135
  ttl: Time-to-live in seconds (None = default)
137
136
  cache_type: Type of cache (api_responses, impact_factors, etc.)
138
137
  use_pickle: Whether to use pickle serialization
139
-
138
+
140
139
  Returns:
141
140
  True if successful, False otherwise
142
141
  """
143
142
  try:
144
143
  if ttl is None:
145
144
  ttl = self.default_ttl
146
-
145
+
147
146
  cache_key = self._get_cache_key(key)
148
147
  cache_path = self._get_cache_path(cache_key, cache_type)
149
-
148
+
150
149
  # Prepare cache entry
151
150
  cache_entry = {
152
- 'key': key,
153
- 'value': value,
154
- 'created_at': datetime.now().isoformat(),
155
- 'expires_at': (datetime.now() + timedelta(seconds=ttl)).isoformat(),
156
- 'ttl': ttl,
157
- 'cache_type': cache_type,
158
- 'serialization': 'pickle' if use_pickle else 'json'
151
+ "key": key,
152
+ "value": value,
153
+ "created_at": datetime.now().isoformat(),
154
+ "expires_at": (datetime.now() + timedelta(seconds=ttl)).isoformat(),
155
+ "ttl": ttl,
156
+ "cache_type": cache_type,
157
+ "serialization": "pickle" if use_pickle else "json",
159
158
  }
160
-
159
+
161
160
  # Serialize and save
162
161
  if use_pickle:
163
- with open(cache_path, 'wb') as f:
162
+ with open(cache_path, "wb") as f:
164
163
  pickle.dump(cache_entry, f)
165
164
  else:
166
- with open(cache_path, 'w') as f:
165
+ with open(cache_path, "w") as f:
167
166
  json.dump(cache_entry, f, indent=2, default=str)
168
-
167
+
169
168
  # Update metadata
170
- self.metadata['entries'][cache_key] = {
171
- 'key': key,
172
- 'cache_type': cache_type,
173
- 'created_at': cache_entry['created_at'],
174
- 'expires_at': cache_entry['expires_at'],
175
- 'file_path': str(cache_path),
176
- 'serialization': cache_entry['serialization']
169
+ self.metadata["entries"][cache_key] = {
170
+ "key": key,
171
+ "cache_type": cache_type,
172
+ "created_at": cache_entry["created_at"],
173
+ "expires_at": cache_entry["expires_at"],
174
+ "file_path": str(cache_path),
175
+ "serialization": cache_entry["serialization"],
177
176
  }
178
- self.metadata['statistics']['total_sets'] += 1
177
+ self.metadata["statistics"]["total_sets"] += 1
179
178
  self._save_metadata()
180
-
179
+
181
180
  logger.debug(f"Cached key '{key}' in {cache_type}")
182
181
  return True
183
-
182
+
184
183
  except Exception as e:
185
184
  logger.error(f"Failed to cache key '{key}': {e}")
186
185
  return False
187
-
188
- def get(self, key: str, cache_type: str = 'api_responses') -> Optional[Any]:
186
+
187
+ def get(self, key: str, cache_type: str = "api_responses") -> Optional[Any]:
189
188
  """
190
189
  Retrieve value from cache
191
-
190
+
192
191
  Args:
193
192
  key: Cache key
194
193
  cache_type: Type of cache
195
-
194
+
196
195
  Returns:
197
196
  Cached value or None if not found/expired
198
197
  """
199
198
  try:
200
199
  cache_key = self._get_cache_key(key)
201
200
  cache_path = self._get_cache_path(cache_key, cache_type)
202
-
201
+
203
202
  # Update statistics
204
- self.metadata['statistics']['total_gets'] += 1
205
-
203
+ self.metadata["statistics"]["total_gets"] += 1
204
+
206
205
  # Check if file exists
207
206
  if not cache_path.exists():
208
- self.metadata['statistics']['cache_misses'] += 1
207
+ self.metadata["statistics"]["cache_misses"] += 1
209
208
  self._save_metadata()
210
209
  logger.debug(f"Cache miss: key '{key}' not found")
211
210
  return None
212
-
211
+
213
212
  # Load cache entry
214
- metadata_entry = self.metadata['entries'].get(cache_key)
213
+ metadata_entry = self.metadata["entries"].get(cache_key)
215
214
  if not metadata_entry:
216
- self.metadata['statistics']['cache_misses'] += 1
215
+ self.metadata["statistics"]["cache_misses"] += 1
217
216
  self._save_metadata()
218
217
  logger.debug(f"Cache miss: metadata for key '{key}' not found")
219
218
  return None
220
-
219
+
221
220
  # Check expiration
222
- expires_at = datetime.fromisoformat(metadata_entry['expires_at'])
221
+ expires_at = datetime.fromisoformat(metadata_entry["expires_at"])
223
222
  if datetime.now() > expires_at:
224
- self.metadata['statistics']['cache_misses'] += 1
223
+ self.metadata["statistics"]["cache_misses"] += 1
225
224
  self._save_metadata()
226
225
  logger.debug(f"Cache miss: key '{key}' expired")
227
226
  # Clean up expired entry
228
227
  self._remove_cache_entry(cache_key)
229
228
  return None
230
-
229
+
231
230
  # Load and return value
232
- if metadata_entry['serialization'] == 'pickle':
233
- with open(cache_path, 'rb') as f:
231
+ if metadata_entry["serialization"] == "pickle":
232
+ with open(cache_path, "rb") as f:
234
233
  cache_entry = pickle.load(f)
235
234
  else:
236
- with open(cache_path, 'r') as f:
235
+ with open(cache_path, "r") as f:
237
236
  cache_entry = json.load(f)
238
-
239
- self.metadata['statistics']['cache_hits'] += 1
237
+
238
+ self.metadata["statistics"]["cache_hits"] += 1
240
239
  self._save_metadata()
241
-
240
+
242
241
  logger.debug(f"Cache hit: key '{key}' retrieved from {cache_type}")
243
- return cache_entry['value']
244
-
242
+ return cache_entry["value"]
243
+
245
244
  except Exception as e:
246
245
  logger.error(f"Failed to retrieve cache key '{key}': {e}")
247
- self.metadata['statistics']['cache_misses'] += 1
246
+ self.metadata["statistics"]["cache_misses"] += 1
248
247
  self._save_metadata()
249
248
  return None
250
-
251
- def delete(self, key: str, cache_type: str = 'api_responses') -> bool:
249
+
250
+ def delete(self, key: str, cache_type: str = "api_responses") -> bool:
252
251
  """Delete a specific cache entry"""
253
252
  try:
254
253
  cache_key = self._get_cache_key(key)
@@ -256,65 +255,66 @@ class CacheManager:
256
255
  except Exception as e:
257
256
  logger.error(f"Failed to delete cache key '{key}': {e}")
258
257
  return False
259
-
258
+
260
259
  def _remove_cache_entry(self, cache_key: str) -> bool:
261
260
  """Remove cache entry by cache key"""
262
261
  try:
263
- metadata_entry = self.metadata['entries'].get(cache_key)
262
+ metadata_entry = self.metadata["entries"].get(cache_key)
264
263
  if metadata_entry:
265
264
  # Remove file
266
- cache_path = Path(metadata_entry['file_path'])
265
+ cache_path = Path(metadata_entry["file_path"])
267
266
  if cache_path.exists():
268
267
  cache_path.unlink()
269
-
268
+
270
269
  # Remove from metadata
271
- del self.metadata['entries'][cache_key]
270
+ del self.metadata["entries"][cache_key]
272
271
  self._save_metadata()
273
-
272
+
274
273
  return True
275
274
  return False
276
275
  except Exception as e:
277
276
  logger.error(f"Failed to remove cache entry {cache_key}: {e}")
278
277
  return False
279
-
278
+
280
279
  def cleanup_expired(self) -> int:
281
280
  """Remove all expired cache entries"""
282
281
  logger.info("Starting cache cleanup of expired entries")
283
-
282
+
284
283
  removed_count = 0
285
284
  current_time = datetime.now()
286
-
285
+
287
286
  # Create a copy of keys to avoid dictionary modification during iteration
288
- cache_keys = list(self.metadata['entries'].keys())
289
-
287
+ cache_keys = list(self.metadata["entries"].keys())
288
+
290
289
  for cache_key in cache_keys:
291
- entry = self.metadata['entries'][cache_key]
292
- expires_at = datetime.fromisoformat(entry['expires_at'])
293
-
290
+ entry = self.metadata["entries"][cache_key]
291
+ expires_at = datetime.fromisoformat(entry["expires_at"])
292
+
294
293
  if current_time > expires_at:
295
294
  if self._remove_cache_entry(cache_key):
296
295
  removed_count += 1
297
-
298
- self.metadata['last_cleanup'] = current_time.isoformat()
296
+
297
+ self.metadata["last_cleanup"] = current_time.isoformat()
299
298
  self._save_metadata()
300
-
299
+
301
300
  logger.info(f"Cleanup completed: removed {removed_count} expired entries")
302
301
  return removed_count
303
-
302
+
304
303
  def cleanup_by_size(self) -> int:
305
304
  """Remove oldest entries if cache exceeds size limit"""
306
305
  current_size = self.get_cache_size()
307
306
  if current_size <= self.max_cache_size_bytes:
308
307
  return 0
309
-
310
- logger.info(f"Cache size ({current_size / 1024 / 1024:.1f}MB) exceeds limit, cleaning up")
311
-
308
+
309
+ logger.info(
310
+ f"Cache size ({current_size / 1024 / 1024:.1f}MB) exceeds limit, cleaning up"
311
+ )
312
+
312
313
  # Sort entries by creation time (oldest first)
313
314
  entries_by_age = sorted(
314
- self.metadata['entries'].items(),
315
- key=lambda x: x[1]['created_at']
315
+ self.metadata["entries"].items(), key=lambda x: x[1]["created_at"]
316
316
  )
317
-
317
+
318
318
  removed_count = 0
319
319
  for cache_key, entry in entries_by_age:
320
320
  if self._remove_cache_entry(cache_key):
@@ -322,149 +322,159 @@ class CacheManager:
322
322
  current_size = self.get_cache_size()
323
323
  if current_size <= self.max_cache_size_bytes:
324
324
  break
325
-
325
+
326
326
  logger.info(f"Size cleanup completed: removed {removed_count} entries")
327
327
  return removed_count
328
-
328
+
329
329
  def clear_all(self, cache_type: Optional[str] = None) -> int:
330
330
  """Clear all cache entries or entries of specific type"""
331
331
  removed_count = 0
332
-
332
+
333
333
  if cache_type:
334
334
  # Clear specific type
335
335
  cache_keys = [
336
- key for key, entry in self.metadata['entries'].items()
337
- if entry['cache_type'] == cache_type
336
+ key
337
+ for key, entry in self.metadata["entries"].items()
338
+ if entry["cache_type"] == cache_type
338
339
  ]
339
340
  logger.info(f"Clearing all {cache_type} cache entries")
340
341
  else:
341
342
  # Clear all
342
- cache_keys = list(self.metadata['entries'].keys())
343
+ cache_keys = list(self.metadata["entries"].keys())
343
344
  logger.info("Clearing all cache entries")
344
-
345
+
345
346
  for cache_key in cache_keys:
346
347
  if self._remove_cache_entry(cache_key):
347
348
  removed_count += 1
348
-
349
+
349
350
  logger.info(f"Cleared {removed_count} cache entries")
350
351
  return removed_count
351
-
352
+
352
353
  def get_cache_size(self) -> int:
353
354
  """Get total cache size in bytes"""
354
355
  total_size = 0
355
- for entry in self.metadata['entries'].values():
356
- cache_path = Path(entry['file_path'])
356
+ for entry in self.metadata["entries"].values():
357
+ cache_path = Path(entry["file_path"])
357
358
  if cache_path.exists():
358
359
  total_size += cache_path.stat().st_size
359
-
360
+
360
361
  # Add metadata file size
361
362
  if self.metadata_file.exists():
362
363
  total_size += self.metadata_file.stat().st_size
363
-
364
+
364
365
  return total_size
365
-
366
+
366
367
  def get_statistics(self) -> Dict:
367
368
  """Get cache usage statistics"""
368
- stats = self.metadata['statistics'].copy()
369
- stats.update({
370
- 'total_entries': len(self.metadata['entries']),
371
- 'cache_size_mb': self.get_cache_size() / 1024 / 1024,
372
- 'cache_size_limit_mb': self.max_cache_size_bytes / 1024 / 1024,
373
- 'hit_rate': (
374
- stats['cache_hits'] / stats['total_gets']
375
- if stats['total_gets'] > 0 else 0.0
376
- ),
377
- 'last_cleanup': self.metadata.get('last_cleanup'),
378
- 'entries_by_type': {}
379
- })
380
-
369
+ stats = self.metadata["statistics"].copy()
370
+ stats.update(
371
+ {
372
+ "total_entries": len(self.metadata["entries"]),
373
+ "cache_size_mb": self.get_cache_size() / 1024 / 1024,
374
+ "cache_size_limit_mb": self.max_cache_size_bytes / 1024 / 1024,
375
+ "hit_rate": (
376
+ stats["cache_hits"] / stats["total_gets"]
377
+ if stats["total_gets"] > 0
378
+ else 0.0
379
+ ),
380
+ "last_cleanup": self.metadata.get("last_cleanup"),
381
+ "entries_by_type": {},
382
+ }
383
+ )
384
+
381
385
  # Count entries by type
382
- for entry in self.metadata['entries'].values():
383
- cache_type = entry['cache_type']
384
- stats['entries_by_type'][cache_type] = stats['entries_by_type'].get(cache_type, 0) + 1
385
-
386
+ for entry in self.metadata["entries"].values():
387
+ cache_type = entry["cache_type"]
388
+ stats["entries_by_type"][cache_type] = (
389
+ stats["entries_by_type"].get(cache_type, 0) + 1
390
+ )
391
+
386
392
  return stats
387
-
393
+
388
394
  def list_entries(self, cache_type: Optional[str] = None) -> List[Dict]:
389
395
  """List cache entries with metadata"""
390
396
  entries = []
391
-
392
- for cache_key, entry in self.metadata['entries'].items():
393
- if cache_type is None or entry['cache_type'] == cache_type:
397
+
398
+ for cache_key, entry in self.metadata["entries"].items():
399
+ if cache_type is None or entry["cache_type"] == cache_type:
394
400
  entry_info = entry.copy()
395
- entry_info['cache_key'] = cache_key
396
- entry_info['expired'] = datetime.now() > datetime.fromisoformat(entry['expires_at'])
401
+ entry_info["cache_key"] = cache_key
402
+ entry_info["expired"] = datetime.now() > datetime.fromisoformat(
403
+ entry["expires_at"]
404
+ )
397
405
  entries.append(entry_info)
398
-
406
+
399
407
  return entries
400
408
 
401
409
 
402
410
  def main():
403
411
  """Demonstration of CacheManager functionality"""
404
412
  logger.info("Starting Cache Manager demonstration")
405
-
413
+
406
414
  # Initialize cache manager
407
415
  cache = CacheManager(cache_dir="/tmp/demo_cache", max_cache_size_mb=10)
408
-
416
+
409
417
  logger.info("Testing cache operations")
410
418
  logger.info("=" * 40)
411
-
419
+
412
420
  # Test basic set/get operations
413
421
  logger.info("1. Testing basic cache operations")
414
-
422
+
415
423
  test_data = {
416
- 'journal_name': 'Nature',
417
- 'impact_factor': 49.962,
418
- 'year': 2023,
419
- 'metadata': {
420
- 'publisher': 'Nature Publishing Group',
421
- 'issn': ['0028-0836', '1476-4687']
422
- }
424
+ "journal_name": "Nature",
425
+ "impact_factor": 49.962,
426
+ "year": 2023,
427
+ "metadata": {
428
+ "publisher": "Nature Publishing Group",
429
+ "issn": ["0028-0836", "1476-4687"],
430
+ },
423
431
  }
424
-
432
+
425
433
  # Set cache entry
426
- success = cache.set('nature_2023_if', test_data, ttl=300, cache_type='impact_factors')
434
+ success = cache.set(
435
+ "nature_2023_if", test_data, ttl=300, cache_type="impact_factors"
436
+ )
427
437
  logger.info(f"Cache set successful: {success}")
428
-
438
+
429
439
  # Get cache entry
430
- retrieved_data = cache.get('nature_2023_if', cache_type='impact_factors')
440
+ retrieved_data = cache.get("nature_2023_if", cache_type="impact_factors")
431
441
  logger.info(f"Cache get successful: {retrieved_data is not None}")
432
442
  if retrieved_data:
433
443
  logger.info(f"Retrieved journal: {retrieved_data['journal_name']}")
434
-
444
+
435
445
  logger.info("")
436
-
446
+
437
447
  # Test different cache types
438
448
  logger.info("2. Testing different cache types")
439
-
440
- cache_types = ['api_responses', 'impact_factors', 'journal_data', 'search_results']
449
+
450
+ cache_types = ["api_responses", "impact_factors", "journal_data", "search_results"]
441
451
  for i, cache_type in enumerate(cache_types):
442
452
  key = f"test_key_{i}"
443
453
  value = f"test_value_{i}_for_{cache_type}"
444
454
  cache.set(key, value, cache_type=cache_type)
445
455
  logger.info(f"Stored in {cache_type}: {key}")
446
-
456
+
447
457
  logger.info("")
448
-
458
+
449
459
  # Test serialization types
450
460
  logger.info("3. Testing serialization types")
451
-
461
+
452
462
  # JSON serialization (default)
453
- json_data = {'type': 'json', 'numbers': [1, 2, 3], 'nested': {'key': 'value'}}
454
- cache.set('json_test', json_data, cache_type='journal_data')
455
-
463
+ json_data = {"type": "json", "numbers": [1, 2, 3], "nested": {"key": "value"}}
464
+ cache.set("json_test", json_data, cache_type="journal_data")
465
+
456
466
  # Pickle serialization
457
- pickle_data = {'type': 'pickle', 'complex_object': datetime.now()}
458
- cache.set('pickle_test', pickle_data, cache_type='journal_data', use_pickle=True)
459
-
467
+ pickle_data = {"type": "pickle", "complex_object": datetime.now()}
468
+ cache.set("pickle_test", pickle_data, cache_type="journal_data", use_pickle=True)
469
+
460
470
  # Verify both work
461
- json_retrieved = cache.get('json_test', cache_type='journal_data')
462
- pickle_retrieved = cache.get('pickle_test', cache_type='journal_data')
463
-
471
+ json_retrieved = cache.get("json_test", cache_type="journal_data")
472
+ pickle_retrieved = cache.get("pickle_test", cache_type="journal_data")
473
+
464
474
  logger.info(f"JSON serialization works: {json_retrieved is not None}")
465
475
  logger.info(f"Pickle serialization works: {pickle_retrieved is not None}")
466
476
  logger.info("")
467
-
477
+
468
478
  # Test cache statistics
469
479
  logger.info("4. Cache statistics")
470
480
  stats = cache.get_statistics()
@@ -473,51 +483,53 @@ def main():
473
483
  logger.info(f"Hit rate: {stats['hit_rate']:.1%}")
474
484
  logger.info(f"Entries by type: {stats['entries_by_type']}")
475
485
  logger.info("")
476
-
486
+
477
487
  # Test cache listing
478
488
  logger.info("5. Cache entry listing")
479
489
  entries = cache.list_entries()
480
490
  logger.info(f"Found {len(entries)} cache entries:")
481
491
  for entry in entries[:3]: # Show first 3
482
- logger.info(f" {entry['key']} [{entry['cache_type']}] - expires: {entry['expires_at'][:19]}")
492
+ logger.info(
493
+ f" {entry['key']} [{entry['cache_type']}] - expires: {entry['expires_at'][:19]}"
494
+ )
483
495
  logger.info("")
484
-
496
+
485
497
  # Test expiration (simulate with short TTL)
486
498
  logger.info("6. Testing cache expiration")
487
- cache.set('expire_test', 'will expire soon', ttl=1) # 1 second TTL
488
-
499
+ cache.set("expire_test", "will expire soon", ttl=1) # 1 second TTL
500
+
489
501
  # Immediate retrieval should work
490
- immediate = cache.get('expire_test')
502
+ immediate = cache.get("expire_test")
491
503
  logger.info(f"Immediate retrieval: {'Success' if immediate else 'Failed'}")
492
-
504
+
493
505
  # Wait for expiration
494
506
  time.sleep(2)
495
- expired = cache.get('expire_test')
507
+ expired = cache.get("expire_test")
496
508
  logger.info(f"After expiration: {'Success' if expired else 'Failed (as expected)'}")
497
509
  logger.info("")
498
-
510
+
499
511
  # Test cleanup operations
500
512
  logger.info("7. Testing cleanup operations")
501
-
513
+
502
514
  # Add some entries with short TTL
503
515
  for i in range(5):
504
- cache.set(f'temp_{i}', f'temporary_data_{i}', ttl=1)
505
-
516
+ cache.set(f"temp_{i}", f"temporary_data_{i}", ttl=1)
517
+
506
518
  time.sleep(2) # Let them expire
507
-
519
+
508
520
  # Cleanup expired entries
509
521
  removed = cache.cleanup_expired()
510
522
  logger.info(f"Cleaned up {removed} expired entries")
511
-
523
+
512
524
  # Final statistics
513
525
  final_stats = cache.get_statistics()
514
526
  logger.info(f"Final cache entries: {final_stats['total_entries']}")
515
527
  logger.info("")
516
-
528
+
517
529
  logger.success("Cache Manager demonstration completed")
518
530
 
519
531
 
520
532
  if __name__ == "__main__":
521
533
  main()
522
534
 
523
- # EOF
535
+ # EOF