scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +19 -8
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +2 -1
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +6 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +6 -12
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +4 -9
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +5 -1
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
- scitex/io/_load_modules/_pdf.py +38 -29
- scitex/io/_load_modules/_sqlite3.py +1 -0
- scitex/io/_load_modules/_txt.py +2 -0
- scitex/io/_load_modules/_xml.py +9 -9
- scitex/io/_load_modules/_zarr.py +12 -10
- scitex/io/_metadata.py +76 -37
- scitex/io/_qr_utils.py +18 -13
- scitex/io/_save.py +220 -63
- scitex/io/_save_modules/__init__.py +7 -2
- scitex/io/_save_modules/_bibtex.py +66 -61
- scitex/io/_save_modules/_canvas.py +5 -6
- scitex/io/_save_modules/_catboost.py +2 -2
- scitex/io/_save_modules/_csv.py +4 -4
- scitex/io/_save_modules/_excel.py +5 -9
- scitex/io/_save_modules/_hdf5.py +9 -21
- scitex/io/_save_modules/_html.py +5 -5
- scitex/io/_save_modules/_image.py +105 -8
- scitex/io/_save_modules/_joblib.py +2 -2
- scitex/io/_save_modules/_json.py +51 -6
- scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
- scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
- scitex/io/_save_modules/_matlab.py +2 -2
- scitex/io/_save_modules/_numpy.py +6 -8
- scitex/io/_save_modules/_pickle.py +4 -4
- scitex/io/_save_modules/_plotly.py +3 -3
- scitex/io/_save_modules/_tex.py +23 -25
- scitex/io/_save_modules/_text.py +2 -2
- scitex/io/_save_modules/_yaml.py +9 -9
- scitex/io/_save_modules/_zarr.py +15 -15
- scitex/io/utils/__init__.py +2 -1
- scitex/io/utils/h5_to_zarr.py +173 -155
- scitex/linalg/__init__.py +1 -1
- scitex/linalg/_geometric_median.py +4 -3
- scitex/logging/_Tee.py +5 -7
- scitex/logging/__init__.py +18 -19
- scitex/logging/_config.py +4 -1
- scitex/logging/_context.py +6 -5
- scitex/logging/_formatters.py +2 -3
- scitex/logging/_handlers.py +19 -20
- scitex/logging/_levels.py +9 -17
- scitex/logging/_logger.py +74 -15
- scitex/logging/_print_capture.py +17 -17
- scitex/nn/_BNet.py +1 -3
- scitex/nn/_Filters.py +6 -2
- scitex/nn/_ModulationIndex.py +3 -1
- scitex/nn/_PAC.py +3 -2
- scitex/nn/_PSD.py +0 -1
- scitex/nn/__init__.py +16 -3
- scitex/path/_clean.py +10 -8
- scitex/path/_find.py +1 -1
- scitex/path/_get_spath.py +1 -2
- scitex/path/_mk_spath.py +1 -1
- scitex/path/_symlink.py +5 -10
- scitex/pd/__init__.py +4 -1
- scitex/pd/_force_df.py +24 -24
- scitex/pd/_get_unique.py +1 -0
- scitex/pd/_merge_columns.py +1 -1
- scitex/pd/_round.py +11 -7
- scitex/pd/_to_xy.py +0 -1
- scitex/plt/REQUESTS.md +191 -0
- scitex/plt/__init__.py +185 -87
- scitex/plt/_subplots/_AxesWrapper.py +22 -6
- scitex/plt/_subplots/_AxisWrapper.py +100 -39
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
- scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
- scitex/plt/_subplots/_FigWrapper.py +93 -60
- scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
- scitex/plt/_subplots/__init__.py +10 -0
- scitex/plt/_subplots/_export_as_csv.py +89 -47
- scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
- scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
- scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
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- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/vis/__init__.py +0 -0
- scitex/vis/backend/__init__.py +3 -3
- scitex/vis/backend/{export.py → _export.py} +1 -1
- scitex/vis/backend/{parser.py → _parser.py} +1 -3
- scitex/vis/backend/{render.py → _render.py} +1 -1
- scitex/vis/canvas.py +15 -3
- scitex/vis/editor/__init__.py +0 -0
- scitex/vis/editor/_dearpygui_editor.py +450 -304
- scitex/vis/editor/_defaults.py +114 -123
- scitex/vis/editor/_edit.py +38 -26
- scitex/vis/editor/_flask_editor.py +8 -8
- scitex/vis/editor/_mpl_editor.py +63 -48
- scitex/vis/editor/_qt_editor.py +210 -159
- scitex/vis/editor/_tkinter_editor.py +146 -89
- scitex/vis/editor/flask_editor/__init__.py +10 -10
- scitex/vis/editor/flask_editor/_bbox.py +529 -0
- scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
- scitex/vis/editor/flask_editor/_plotter.py +567 -0
- scitex/vis/editor/flask_editor/_renderer.py +393 -0
- scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
- scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
- scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
- scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
- scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
- scitex/vis/io/__init__.py +5 -5
- scitex/vis/io/{canvas.py → _canvas.py} +8 -4
- scitex/vis/io/{data.py → _data.py} +13 -9
- scitex/vis/io/{directory.py → _directory.py} +7 -4
- scitex/vis/io/{export.py → _export.py} +15 -12
- scitex/vis/io/{load.py → _load.py} +1 -1
- scitex/vis/io/{panel.py → _panel.py} +21 -13
- scitex/vis/io/{save.py → _save.py} +0 -0
- scitex/vis/model/__init__.py +7 -7
- scitex/vis/model/{annotations.py → _annotations.py} +2 -4
- scitex/vis/model/{axes.py → _axes.py} +1 -1
- scitex/vis/model/{figure.py → _figure.py} +0 -0
- scitex/vis/model/{guides.py → _guides.py} +1 -1
- scitex/vis/model/{plot.py → _plot.py} +2 -4
- scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
- scitex/vis/model/{styles.py → _styles.py} +0 -0
- scitex/vis/utils/__init__.py +2 -2
- scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
- scitex/vis/utils/{validate.py → _validate.py} +3 -9
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
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@@ -73,9 +73,9 @@ class IEEEXploreTranslator(BaseTranslator):
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# Method 1: Extract arnumber from current URL (JS line 135)
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# Match patterns: arnumber=123456 or /document/123456
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current_url = page.url
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arnumber_match = re.search(r
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arnumber_match = re.search(r"/document/(\d+)", current_url)
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if arnumber_match:
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arnumber = arnumber_match.group(1)
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# Check for PDF link in the page (JS lines 176-177)
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try:
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# Look for iframe with PDF
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iframe_src = await page.locator(
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iframe_src = await page.locator(
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'iframe[src*=".pdf"], iframe[src*="/getPDF.jsp"]'
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).first.get_attribute("src", timeout=2000)
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if iframe_src.startswith(
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if iframe_src.startswith("/"):
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pdf_url = f"https://ieeexplore.ieee.org{iframe_src}"
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elif not iframe_src.startswith(
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pdf_url = f"https://ieeexplore.ieee.org/{iframe_src}"
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else:
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pdf_url = iframe_src
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# Method 2: Look for PDF download link on the page
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try:
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# Check for direct PDF download links
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pdf_link = await page.locator(
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pdf_link = await page.locator(
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'a[href*=".pdf"], a[href*="/getPDF.jsp"], a[href*="/stamp/"]'
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).first.get_attribute("href", timeout=2000)
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if pdf_link:
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# Make absolute URL if needed
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if pdf_link.startswith(
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if pdf_link.startswith("/"):
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pdf_link = f"https://ieeexplore.ieee.org{pdf_link}"
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elif not pdf_link.startswith(
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elif not pdf_link.startswith("http"):
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pdf_link = f"https://ieeexplore.ieee.org/{pdf_link}"
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pdf_urls.append(pdf_link)
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return pdf_urls
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script_elements = await page.locator('script[type="text/javascript"]').all()
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for script_element in script_elements:
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script = await script_element.text_content()
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if script and
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if script and "global.document.metadata" in script:
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# Try to extract arnumber from metadata
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arnumber_match = re.search(r'"arnumber"\s*:\s*"(\d+)"', script)
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if not arnumber_match:
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try:
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# Extract arnumber from URL (JS line 135)
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current_url = page.url
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arnumber_match = re.search(r
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arnumber_match = re.search(r"arnumber=(\d+)", current_url)
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if not arnumber_match:
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arnumber_match = re.search(r
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arnumber_match = re.search(r"/document/(\d+)", current_url)
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if not arnumber_match:
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return None
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arnumber = arnumber_match.group(1)
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metadata[
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metadata["arnumber"] = arnumber
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# Extract metadata from script tag (JS lines 138-149)
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script_elements = await page.locator('script[type="text/javascript"]').all()
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for script_element in script_elements:
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script = await script_element.text_content()
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if script and
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if script and "global.document.metadata" in script:
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try:
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# Extract JSON metadata (JS lines 140-148)
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data_raw = script.split("global.document.metadata")[1]
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data_raw = re.sub(r
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data_raw = re.sub(r
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data_raw = re.sub(r"^=", "", data_raw)
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data_raw = re.sub(r"};[\s\S]*$", "}", data_raw)
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data = json.loads(data_raw)
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# Extract authors (JS lines 220-229)
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if
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if "authors" in data and data["authors"]:
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authors = []
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for author in data[
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for author in data["authors"]:
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author_name = {
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"firstName": author.get("firstName", ""),
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"lastName": author.get("lastName", ""),
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}
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authors.append(author_name)
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metadata[
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metadata["authors"] = authors
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# Extract other metadata
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if
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metadata[
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if
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metadata[
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if
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metadata[
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if
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metadata[
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if
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metadata[
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if "title" in data:
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metadata["title"] = data["title"]
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if "doi" in data:
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metadata["doi"] = data["doi"]
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if "abstract" in data:
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metadata["abstract"] = data["abstract"]
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if "publicationTitle" in data:
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metadata["publicationTitle"] = data["publicationTitle"]
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if "issn" in data:
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metadata["issn"] = data.get("issn", [])
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break
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except Exception:
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@@ -239,16 +243,18 @@ class IEEEXploreTranslator(BaseTranslator):
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# Determine item type (JS lines 44-50)
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# Check breadcrumbs for "Conferences"
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try:
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first_breadcrumb = await page.locator(
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first_breadcrumb = await page.locator(
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'div[class*="breadcrumbs"] a'
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).first.text_content(timeout=2000)
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if first_breadcrumb and "Conference" in first_breadcrumb:
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metadata[
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metadata["itemType"] = "conferencePaper"
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else:
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metadata[
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metadata["itemType"] = "journalArticle"
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except Exception:
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metadata[
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metadata["itemType"] = "journalArticle"
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# Clean URL (JS lines 237-239)
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metadata[
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metadata["url"] = re.sub(r"[?#].*", "", current_url)
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return metadata
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@@ -85,7 +85,9 @@ if __name__ == "__main__":
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test_url = "http://www.int-res.com/abstracts/meps/v403/p13-27/"
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print(f"Testing InterResearchScienceCenterTranslator with URL: {test_url}")
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print(
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+
print(
|
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89
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+
f"URL matches pattern: {InterResearchScienceCenterTranslator.matches_url(test_url)}\n"
|
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)
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91
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90
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async with async_playwright() as p:
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browser = await p.chromium.launch(headless=True)
|
|
@@ -97,7 +99,9 @@ if __name__ == "__main__":
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97
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await page.wait_for_load_state("domcontentloaded")
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98
100
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99
101
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print("Extracting PDF URLs...")
|
|
100
|
-
pdf_urls =
|
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102
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+
pdf_urls = (
|
|
103
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+
await InterResearchScienceCenterTranslator.extract_pdf_urls_async(page)
|
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104
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+
)
|
|
101
105
|
|
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102
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|
print(f"\nResults:")
|
|
103
107
|
print(f" Found {len(pdf_urls)} PDF URL(s)")
|
|
@@ -12,7 +12,9 @@ class JiscHistoricalTextsTranslator(BaseTranslator):
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12
12
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"""JISC Historical Texts."""
|
|
13
13
|
|
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14
14
|
LABEL = "JISC Historical Texts"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(data\.)?[^/]*historicaltexts\.jisc\.ac\.uk/(view|results)\?"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -83,12 +83,12 @@ class JSTORTranslator(BaseTranslator):
|
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|
83
83
|
jid = urllib.parse.unquote(match.group(1))
|
|
84
84
|
|
|
85
85
|
# Remove .pdf extension if present
|
|
86
|
-
if jid.lower().endswith(
|
|
86
|
+
if jid.lower().endswith(".pdf"):
|
|
87
87
|
jid = jid[:-4]
|
|
88
88
|
|
|
89
89
|
# If not already a DOI (starting with 10.), convert to JSTOR DOI
|
|
90
|
-
if not jid.startswith(
|
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91
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-
jid = f
|
|
90
|
+
if not jid.startswith("10."):
|
|
91
|
+
jid = f"10.2307/{jid}"
|
|
92
92
|
|
|
93
93
|
return jid
|
|
94
94
|
|
|
@@ -104,21 +104,21 @@ class JSTORTranslator(BaseTranslator):
|
|
|
104
104
|
"""
|
|
105
105
|
try:
|
|
106
106
|
# Check for book indicators
|
|
107
|
-
book_button = await page.query_selector(
|
|
107
|
+
book_button = await page.query_selector(".book_info_button")
|
|
108
108
|
if book_button:
|
|
109
|
-
return
|
|
109
|
+
return "book"
|
|
110
110
|
|
|
111
111
|
# Check for book chapter indicators
|
|
112
|
-
analytics = await page.query_selector(
|
|
112
|
+
analytics = await page.query_selector("script[data-analytics-provider]")
|
|
113
113
|
if analytics:
|
|
114
114
|
content = await analytics.inner_text()
|
|
115
|
-
if
|
|
116
|
-
return
|
|
115
|
+
if "chapter view" in content:
|
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+
return "bookSection"
|
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except Exception:
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pass
|
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# Default to journal article
|
|
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-
return
|
|
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+
return "journalArticle"
|
|
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|
|
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@classmethod
|
|
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async def _check_pdf_access(cls, page: Page) -> bool:
|
|
@@ -142,7 +142,7 @@ class JSTORTranslator(BaseTranslator):
|
|
|
142
142
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'a[href*="pdfplus"]',
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143
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'a[href*=".pdf"]',
|
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'button:has-text("Download PDF")',
|
|
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-
|
|
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+
".download-pdf",
|
|
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146
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]
|
|
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|
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|
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148
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for selector in pdf_selectors:
|
|
@@ -187,7 +187,7 @@ class JSTORTranslator(BaseTranslator):
|
|
|
187
187
|
item_type = await cls._detect_item_type(page)
|
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# Books don't have PDFs
|
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-
if item_type ==
|
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+
if item_type == "book":
|
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191
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return pdf_urls
|
|
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192
|
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# Check if PDF access is available
|
|
@@ -196,7 +196,9 @@ class JSTORTranslator(BaseTranslator):
|
|
|
196
196
|
if has_access:
|
|
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197
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# Construct PDF URL
|
|
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198
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# JSTOR uses pdfplus for enhanced PDFs
|
|
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-
pdf_url =
|
|
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+
pdf_url = (
|
|
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+
f"https://www.jstor.org/stable/pdfplus/{jid}.pdf?acceptTC=true"
|
|
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+
)
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|
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pdf_urls.append(pdf_url)
|
|
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203
|
|
|
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|
except Exception as e:
|
|
@@ -12,7 +12,9 @@ class KoreanNationalLibraryTranslator(BaseTranslator):
|
|
|
12
12
|
"""Korean National Library."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Korean National Library"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
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+
URL_TARGET_PATTERN = (
|
|
16
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+
r"^https?://www\.nl\.go\.kr/(EN|NL)/contents/(eng)?[sS]earch\.do"
|
|
17
|
+
)
|
|
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18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class LaTimesTranslator(BaseTranslator):
|
|
|
12
12
|
"""LA Times."""
|
|
13
13
|
|
|
14
14
|
LABEL = "LA Times"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(www\.|travel\.|articles\.|latimesblogs\.)?latimes\.com"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class LandesbibliographieBadenWurttembergTranslator(BaseTranslator):
|
|
|
12
12
|
"""Landesbibliographie Baden-Wurttemberg."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Landesbibliographie Baden-Wurttemberg"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(www\.)?(statistik\.baden-wuerttemberg|statistik-bw)\.de/LABI"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class LegislativeInsightTranslator(BaseTranslator):
|
|
|
12
12
|
"""Legislative Insight."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Legislative Insight"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(preprod\.)?li\.proquest\.com/legislativeinsight/LegHistMain\.jsp"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class LibrariesTasmaniaTranslator(BaseTranslator):
|
|
|
12
12
|
"""Libraries Tasmania."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Libraries Tasmania"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://librariestas\.ent\.sirsidynix\.net\.au/client/en_AU/"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class LibraryCatalogKohaTranslator(BaseTranslator):
|
|
|
12
12
|
"""Library Catalog (Koha)."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Library Catalog (Koha)"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://[^/]+/cgi-bin/koha/opac-(detail|search|shelves)\.pl\?"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -18,7 +18,7 @@ from typing import List
|
|
|
18
18
|
from playwright.async_api import Page, Error as PlaywrightError
|
|
19
19
|
|
|
20
20
|
# Explicit public API - only export the translator class
|
|
21
|
-
__all__ = [
|
|
21
|
+
__all__ = ["LingBuzzTranslator"]
|
|
22
22
|
|
|
23
23
|
# Private module-level logger - not exported
|
|
24
24
|
_logger = logging.getLogger(__name__)
|
|
@@ -125,7 +125,7 @@ class LingBuzzTranslator:
|
|
|
125
125
|
# Validate and filter URLs
|
|
126
126
|
if urls and isinstance(urls, list):
|
|
127
127
|
for url in urls:
|
|
128
|
-
if url and isinstance(url, str) and url.startswith(
|
|
128
|
+
if url and isinstance(url, str) and url.startswith("http"):
|
|
129
129
|
pdf_urls.append(url)
|
|
130
130
|
else:
|
|
131
131
|
_logger.warning(f"LingBuzz: Invalid URL format: {url}")
|
|
@@ -8,7 +8,9 @@ from playwright.async_api import Page
|
|
|
8
8
|
from ..core.base import BaseTranslator
|
|
9
9
|
|
|
10
10
|
|
|
11
|
-
class MaxPlanckInstituteForTheHistoryOfScienceVirtualLaboratoryLibraryTranslator(
|
|
11
|
+
class MaxPlanckInstituteForTheHistoryOfScienceVirtualLaboratoryLibraryTranslator(
|
|
12
|
+
BaseTranslator
|
|
13
|
+
):
|
|
12
14
|
"""Max Planck Institute for the History of Science Virtual Laboratory Library."""
|
|
13
15
|
|
|
14
16
|
LABEL = "Max Planck Institute for the History of Science Virtual Laboratory Library"
|
|
@@ -29,7 +29,9 @@ class MDPITranslator(BaseTranslator):
|
|
|
29
29
|
|
|
30
30
|
# Method 1: citation_pdf_url meta tag (primary method for MDPI)
|
|
31
31
|
try:
|
|
32
|
-
pdf_url = await page.locator(
|
|
32
|
+
pdf_url = await page.locator(
|
|
33
|
+
'meta[name="citation_pdf_url"]'
|
|
34
|
+
).first.get_attribute("content", timeout=2000)
|
|
33
35
|
if pdf_url:
|
|
34
36
|
pdf_urls.append(pdf_url)
|
|
35
37
|
return pdf_urls
|
|
@@ -39,11 +41,13 @@ class MDPITranslator(BaseTranslator):
|
|
|
39
41
|
# Method 2: Direct PDF download link
|
|
40
42
|
try:
|
|
41
43
|
# MDPI typically has a download link with specific class
|
|
42
|
-
pdf_link = await page.locator(
|
|
44
|
+
pdf_link = await page.locator(
|
|
45
|
+
'a.download[href*="/pdf"]'
|
|
46
|
+
).first.get_attribute("href", timeout=2000)
|
|
43
47
|
if pdf_link:
|
|
44
48
|
# Make absolute URL if needed
|
|
45
|
-
if pdf_link.startswith(
|
|
46
|
-
base_url = await page.evaluate(
|
|
49
|
+
if pdf_link.startswith("/"):
|
|
50
|
+
base_url = await page.evaluate("window.location.origin")
|
|
47
51
|
pdf_link = f"{base_url}{pdf_link}"
|
|
48
52
|
pdf_urls.append(pdf_link)
|
|
49
53
|
return pdf_urls
|
|
@@ -53,8 +57,10 @@ class MDPITranslator(BaseTranslator):
|
|
|
53
57
|
# Method 3: Construct PDF URL from article URL
|
|
54
58
|
# MDPI pattern: https://www.mdpi.com/2076-3425/9/7/156 -> https://www.mdpi.com/2076-3425/9/7/156/pdf
|
|
55
59
|
try:
|
|
56
|
-
current_url = await page.evaluate(
|
|
57
|
-
if
|
|
60
|
+
current_url = await page.evaluate("window.location.href")
|
|
61
|
+
if (
|
|
62
|
+
"/article/" not in current_url
|
|
63
|
+
): # Not an article page with /article/ prefix
|
|
58
64
|
# Try appending /pdf to current URL
|
|
59
65
|
pdf_url = f"{current_url.rstrip('/')}/pdf"
|
|
60
66
|
pdf_urls.append(pdf_url)
|
|
@@ -12,7 +12,9 @@ class MicrobiologySocietyJournalsTranslator(BaseTranslator):
|
|
|
12
12
|
"""Microbiology Society Journals."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Microbiology Society Journals"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(www\.)?(\w)+\.microbiologyresearch\.org/(content/journal/|search?)"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class MidasJournalsTranslator(BaseTranslator):
|
|
|
12
12
|
"""MIDAS Journals."""
|
|
13
13
|
|
|
14
14
|
LABEL = "MIDAS Journals"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(www\.)?(insight-journal|midasjournal|vtkjournal)\.org/"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -12,7 +12,9 @@ class NagoyaUniversityOpacTranslator(BaseTranslator):
|
|
|
12
12
|
"""Nagoya University OPAC."""
|
|
13
13
|
|
|
14
14
|
LABEL = "Nagoya University OPAC"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://opac\.nul\.nagoya-u\.ac\.jp/webopac/(catdbl\.do|ctlsrh\.do)"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -48,7 +48,7 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
48
48
|
True if URL matches Nature Publishing Group pattern
|
|
49
49
|
"""
|
|
50
50
|
# Exclude PDF files (JS line 477)
|
|
51
|
-
if url.endswith(
|
|
51
|
+
if url.endswith(".pdf"):
|
|
52
52
|
return False
|
|
53
53
|
|
|
54
54
|
# Basic nature.com check
|
|
@@ -57,16 +57,26 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
57
57
|
|
|
58
58
|
# More specific checks based on JavaScript detectWeb (lines 478-500)
|
|
59
59
|
# Single article patterns (JS line 478)
|
|
60
|
-
if re.search(
|
|
60
|
+
if re.search(
|
|
61
|
+
r"/(full|abs)/[^/]+($|\?|#)|/fp/.+?[?&]lang=ja(?:&|$)|/articles/", url
|
|
62
|
+
):
|
|
61
63
|
return True
|
|
62
64
|
|
|
63
65
|
# Multiple items patterns (JS lines 481-489)
|
|
64
|
-
if (
|
|
65
|
-
|
|
66
|
+
if (
|
|
67
|
+
"/research/" in url
|
|
68
|
+
or "/topten/" in url
|
|
69
|
+
or "/most.htm" in url
|
|
70
|
+
or "/search?" in url
|
|
71
|
+
or "sp-q=" in url
|
|
72
|
+
or "/archive/" in url
|
|
73
|
+
):
|
|
66
74
|
return True
|
|
67
75
|
|
|
68
76
|
# Issue table of contents patterns
|
|
69
|
-
if re.search(r
|
|
77
|
+
if re.search(r"journal/v\d+/n\d+/", url) or re.search(
|
|
78
|
+
r"volumes/\d+/issues/\d+", url
|
|
79
|
+
):
|
|
70
80
|
return True
|
|
71
81
|
|
|
72
82
|
return False
|
|
@@ -102,8 +112,7 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
102
112
|
|
|
103
113
|
# Pattern: https://www.nature.com/.../full/article_id.html -> .../pdf/article_id.pdf
|
|
104
114
|
url_match = re.match(
|
|
105
|
-
r
|
|
106
|
-
current_url
|
|
115
|
+
r"(^[^#?]+/)(?:full|abs)(\/[^#?]+?\.)[a-zA-Z]+(?=$|\?|#)", current_url
|
|
107
116
|
)
|
|
108
117
|
|
|
109
118
|
if url_match:
|
|
@@ -118,18 +127,20 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
118
127
|
# Method 2: Look for download PDF link (JS line 273)
|
|
119
128
|
# JS: return attr(doc, 'a[data-track-action="download pdf"]', 'href');
|
|
120
129
|
try:
|
|
121
|
-
pdf_link = await page.locator(
|
|
130
|
+
pdf_link = await page.locator(
|
|
131
|
+
'a[data-track-action="download pdf"]'
|
|
132
|
+
).first.get_attribute("href", timeout=2000)
|
|
122
133
|
if pdf_link:
|
|
123
134
|
# Make absolute URL if needed
|
|
124
|
-
if pdf_link.startswith(
|
|
125
|
-
base_url = await page.evaluate(
|
|
135
|
+
if pdf_link.startswith("/"):
|
|
136
|
+
base_url = await page.evaluate("window.location.origin")
|
|
126
137
|
pdf_link = f"{base_url}{pdf_link}"
|
|
127
|
-
elif not pdf_link.startswith(
|
|
138
|
+
elif not pdf_link.startswith("http"):
|
|
128
139
|
current_url = page.url
|
|
129
140
|
# Remove query params and fragments
|
|
130
|
-
base_url = re.sub(r
|
|
141
|
+
base_url = re.sub(r"[?#].*$", "", current_url)
|
|
131
142
|
# Remove trailing path
|
|
132
|
-
base_url = re.sub(r
|
|
143
|
+
base_url = re.sub(r"/[^/]*$", "", base_url)
|
|
133
144
|
pdf_link = f"{base_url}/{pdf_link}"
|
|
134
145
|
return [pdf_link]
|
|
135
146
|
except Exception:
|
|
@@ -139,13 +150,13 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
139
150
|
# e.g., https://www.nature.com/articles/onc2011282
|
|
140
151
|
try:
|
|
141
152
|
current_url = page.url
|
|
142
|
-
if
|
|
153
|
+
if "/articles/" in current_url:
|
|
143
154
|
# Extract article ID
|
|
144
|
-
article_match = re.search(r
|
|
155
|
+
article_match = re.search(r"/articles/([^/?#]+)", current_url)
|
|
145
156
|
if article_match:
|
|
146
157
|
article_id = article_match.group(1)
|
|
147
158
|
# Try different PDF URL patterns
|
|
148
|
-
base_url = await page.evaluate(
|
|
159
|
+
base_url = await page.evaluate("window.location.origin")
|
|
149
160
|
|
|
150
161
|
# Pattern 1: /articles/article_id.pdf
|
|
151
162
|
pdf_url = f"{base_url}/articles/{article_id}.pdf"
|
|
@@ -155,9 +166,9 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
155
166
|
if pdf_links:
|
|
156
167
|
for link in pdf_links[:3]: # Check first 3 PDF links
|
|
157
168
|
try:
|
|
158
|
-
href = await link.get_attribute(
|
|
169
|
+
href = await link.get_attribute("href", timeout=1000)
|
|
159
170
|
if href and article_id in href:
|
|
160
|
-
if href.startswith(
|
|
171
|
+
if href.startswith("/"):
|
|
161
172
|
href = f"{base_url}{href}"
|
|
162
173
|
return [href]
|
|
163
174
|
except Exception:
|
|
@@ -171,7 +182,9 @@ class NaturePublishingGroupTranslator(BaseTranslator):
|
|
|
171
182
|
# Method 4: Meta tag fallback
|
|
172
183
|
try:
|
|
173
184
|
# Some Nature pages have PDF URL in meta tags
|
|
174
|
-
pdf_url = await page.locator(
|
|
185
|
+
pdf_url = await page.locator(
|
|
186
|
+
'meta[name="citation_pdf_url"]'
|
|
187
|
+
).first.get_attribute("content", timeout=2000)
|
|
175
188
|
if pdf_url:
|
|
176
189
|
return [pdf_url]
|
|
177
190
|
except Exception:
|
|
@@ -12,7 +12,9 @@ class NtsbAccidentReportsTranslator(BaseTranslator):
|
|
|
12
12
|
"""NTSB Accident Reports."""
|
|
13
13
|
|
|
14
14
|
LABEL = "NTSB Accident Reports"
|
|
15
|
-
URL_TARGET_PATTERN =
|
|
15
|
+
URL_TARGET_PATTERN = (
|
|
16
|
+
r"^https?://(www\.)?ntsb\.gov/investigations/AccidentReports/Pages/"
|
|
17
|
+
)
|
|
16
18
|
|
|
17
19
|
@classmethod
|
|
18
20
|
def matches_url(cls, url: str) -> bool:
|
|
@@ -18,7 +18,7 @@ from typing import List
|
|
|
18
18
|
from playwright.async_api import Page, Error as PlaywrightError
|
|
19
19
|
|
|
20
20
|
# Explicit public API - only export the translator class
|
|
21
|
-
__all__ = [
|
|
21
|
+
__all__ = ["OpenEditionJournalsTranslator"]
|
|
22
22
|
|
|
23
23
|
# Private module-level logger - not exported
|
|
24
24
|
_logger = logging.getLogger(__name__)
|
|
@@ -102,7 +102,7 @@ class OpenEditionJournalsTranslator:
|
|
|
102
102
|
# Validate and filter URLs
|
|
103
103
|
if urls and isinstance(urls, list):
|
|
104
104
|
for url in urls:
|
|
105
|
-
if url and isinstance(url, str) and url.startswith(
|
|
105
|
+
if url and isinstance(url, str) and url.startswith("http"):
|
|
106
106
|
pdf_urls.append(url)
|
|
107
107
|
else:
|
|
108
108
|
_logger.warning(f"OpenEdition: Invalid URL format: {url}")
|
|
@@ -130,7 +130,9 @@ if __name__ == "__main__":
|
|
|
130
130
|
|
|
131
131
|
for test_url in test_urls:
|
|
132
132
|
print(f"\nTesting OpenEditionJournalsTranslator with URL: {test_url}")
|
|
133
|
-
print(
|
|
133
|
+
print(
|
|
134
|
+
f"URL matches pattern: {OpenEditionJournalsTranslator.matches_url(test_url)}"
|
|
135
|
+
)
|
|
134
136
|
|
|
135
137
|
async with async_playwright() as p:
|
|
136
138
|
browser = await p.chromium.launch(headless=True)
|
|
@@ -142,7 +144,9 @@ if __name__ == "__main__":
|
|
|
142
144
|
await page.wait_for_load_state("domcontentloaded")
|
|
143
145
|
|
|
144
146
|
print("Extracting PDF URLs...")
|
|
145
|
-
pdf_urls = await OpenEditionJournalsTranslator.extract_pdf_urls_async(
|
|
147
|
+
pdf_urls = await OpenEditionJournalsTranslator.extract_pdf_urls_async(
|
|
148
|
+
page
|
|
149
|
+
)
|
|
146
150
|
|
|
147
151
|
print(f"\nResults:")
|
|
148
152
|
print(f" Found {len(pdf_urls)} PDF URL(s)")
|