scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1091) hide show
  1. scitex/__init__.py +19 -8
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/benchmark/__init__.py +15 -25
  66. scitex/benchmark/benchmark.py +124 -117
  67. scitex/benchmark/monitor.py +117 -107
  68. scitex/benchmark/profiler.py +61 -58
  69. scitex/bridge/__init__.py +110 -0
  70. scitex/bridge/_helpers.py +149 -0
  71. scitex/bridge/_plt_vis.py +529 -0
  72. scitex/bridge/_protocol.py +283 -0
  73. scitex/bridge/_stats_plt.py +261 -0
  74. scitex/bridge/_stats_vis.py +265 -0
  75. scitex/browser/__init__.py +0 -2
  76. scitex/browser/auth/__init__.py +0 -0
  77. scitex/browser/auth/google.py +16 -11
  78. scitex/browser/automation/CookieHandler.py +2 -3
  79. scitex/browser/collaboration/__init__.py +3 -0
  80. scitex/browser/collaboration/auth_helpers.py +3 -1
  81. scitex/browser/collaboration/collaborative_agent.py +2 -0
  82. scitex/browser/collaboration/interactive_panel.py +2 -2
  83. scitex/browser/collaboration/shared_session.py +20 -11
  84. scitex/browser/collaboration/standard_interactions.py +1 -0
  85. scitex/browser/core/BrowserMixin.py +12 -30
  86. scitex/browser/core/ChromeProfileManager.py +9 -24
  87. scitex/browser/debugging/_browser_logger.py +15 -25
  88. scitex/browser/debugging/_failure_capture.py +9 -2
  89. scitex/browser/debugging/_highlight_element.py +15 -6
  90. scitex/browser/debugging/_show_grid.py +5 -6
  91. scitex/browser/debugging/_sync_session.py +4 -3
  92. scitex/browser/debugging/_test_monitor.py +14 -5
  93. scitex/browser/debugging/_visual_cursor.py +46 -35
  94. scitex/browser/interaction/click_center.py +4 -3
  95. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  96. scitex/browser/interaction/close_popups.py +79 -66
  97. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  98. scitex/browser/pdf/__init__.py +3 -1
  99. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  100. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  101. scitex/browser/remote/CaptchaHandler.py +109 -96
  102. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  103. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  104. scitex/browser/stealth/HumanBehavior.py +4 -9
  105. scitex/browser/stealth/StealthManager.py +11 -26
  106. scitex/capture/__init__.py +17 -17
  107. scitex/capture/__main__.py +2 -3
  108. scitex/capture/capture.py +23 -51
  109. scitex/capture/cli.py +14 -39
  110. scitex/capture/gif.py +5 -9
  111. scitex/capture/mcp_server.py +7 -20
  112. scitex/capture/session.py +4 -3
  113. scitex/capture/utils.py +18 -53
  114. scitex/cli/__init__.py +1 -1
  115. scitex/cli/cloud.py +158 -116
  116. scitex/cli/config.py +224 -0
  117. scitex/cli/main.py +41 -40
  118. scitex/cli/scholar.py +60 -27
  119. scitex/cli/security.py +14 -20
  120. scitex/cli/web.py +87 -90
  121. scitex/cli/writer.py +51 -45
  122. scitex/cloud/__init__.py +14 -11
  123. scitex/cloud/_matplotlib_hook.py +6 -6
  124. scitex/config/README.md +313 -0
  125. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  126. scitex/config/_ScitexConfig.py +319 -0
  127. scitex/config/__init__.py +41 -9
  128. scitex/config/_paths.py +325 -0
  129. scitex/config/default.yaml +81 -0
  130. scitex/context/_suppress_output.py +2 -3
  131. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  132. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  133. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  134. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  135. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  136. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  137. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  138. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  139. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  140. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  141. scitex/db/_BaseMixins/__init__.py +1 -1
  142. scitex/db/__init__.py +9 -1
  143. scitex/db/__main__.py +8 -21
  144. scitex/db/_check_health.py +15 -31
  145. scitex/db/_delete_duplicates.py +7 -4
  146. scitex/db/_inspect.py +22 -38
  147. scitex/db/_inspect_optimized.py +89 -85
  148. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  149. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  150. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  151. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  152. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  153. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  154. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  155. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  156. scitex/db/_postgresql/__init__.py +1 -1
  157. scitex/db/_sqlite3/_SQLite3.py +2 -4
  158. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  159. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  160. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  161. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  162. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  163. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  164. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  165. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  166. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  167. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  169. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  170. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  171. scitex/db/_sqlite3/__init__.py +1 -1
  172. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  173. scitex/decorators/__init__.py +29 -4
  174. scitex/decorators/_auto_order.py +43 -43
  175. scitex/decorators/_batch_fn.py +12 -6
  176. scitex/decorators/_cache_disk.py +8 -9
  177. scitex/decorators/_cache_disk_async.py +8 -7
  178. scitex/decorators/_combined.py +19 -13
  179. scitex/decorators/_converters.py +16 -3
  180. scitex/decorators/_deprecated.py +32 -22
  181. scitex/decorators/_numpy_fn.py +18 -4
  182. scitex/decorators/_pandas_fn.py +17 -5
  183. scitex/decorators/_signal_fn.py +17 -3
  184. scitex/decorators/_torch_fn.py +32 -15
  185. scitex/decorators/_xarray_fn.py +23 -9
  186. scitex/dev/_analyze_code_flow.py +0 -2
  187. scitex/dict/_DotDict.py +15 -19
  188. scitex/dict/_flatten.py +1 -0
  189. scitex/dict/_listed_dict.py +1 -0
  190. scitex/dict/_pop_keys.py +1 -0
  191. scitex/dict/_replace.py +1 -0
  192. scitex/dict/_safe_merge.py +1 -0
  193. scitex/dict/_to_str.py +2 -3
  194. scitex/dsp/__init__.py +13 -4
  195. scitex/dsp/_crop.py +3 -1
  196. scitex/dsp/_detect_ripples.py +3 -1
  197. scitex/dsp/_modulation_index.py +3 -1
  198. scitex/dsp/_time.py +3 -1
  199. scitex/dsp/_wavelet.py +0 -1
  200. scitex/dsp/example.py +0 -5
  201. scitex/dsp/filt.py +4 -0
  202. scitex/dsp/utils/__init__.py +4 -1
  203. scitex/dsp/utils/pac.py +3 -3
  204. scitex/dt/_normalize_timestamp.py +4 -1
  205. scitex/errors.py +3 -6
  206. scitex/etc/__init__.py +1 -1
  207. scitex/gen/_DimHandler.py +6 -6
  208. scitex/gen/__init__.py +5 -1
  209. scitex/gen/_deprecated_close.py +1 -0
  210. scitex/gen/_deprecated_start.py +5 -3
  211. scitex/gen/_detect_environment.py +44 -41
  212. scitex/gen/_detect_notebook_path.py +51 -47
  213. scitex/gen/_embed.py +1 -1
  214. scitex/gen/_get_notebook_path.py +81 -62
  215. scitex/gen/_inspect_module.py +0 -1
  216. scitex/gen/_norm.py +16 -7
  217. scitex/gen/_norm_cache.py +78 -65
  218. scitex/gen/_print_config.py +0 -3
  219. scitex/gen/_src.py +2 -3
  220. scitex/gen/_title_case.py +3 -2
  221. scitex/gen/_to_even.py +8 -8
  222. scitex/gen/_transpose.py +3 -3
  223. scitex/gen/misc.py +0 -3
  224. scitex/gists/_SigMacro_processFigure_S.py +2 -2
  225. scitex/gists/_SigMacro_toBlue.py +2 -2
  226. scitex/gists/__init__.py +4 -1
  227. scitex/git/_branch.py +19 -11
  228. scitex/git/_clone.py +23 -15
  229. scitex/git/_commit.py +10 -12
  230. scitex/git/_init.py +15 -38
  231. scitex/git/_remote.py +9 -3
  232. scitex/git/_result.py +3 -0
  233. scitex/git/_retry.py +2 -5
  234. scitex/git/_types.py +4 -0
  235. scitex/git/_validation.py +8 -8
  236. scitex/git/_workflow.py +4 -4
  237. scitex/io/__init__.py +2 -1
  238. scitex/io/_glob.py +2 -2
  239. scitex/io/_json2md.py +3 -3
  240. scitex/io/_load.py +6 -8
  241. scitex/io/_load_cache.py +71 -71
  242. scitex/io/_load_configs.py +2 -3
  243. scitex/io/_load_modules/_H5Explorer.py +6 -12
  244. scitex/io/_load_modules/_ZarrExplorer.py +3 -3
  245. scitex/io/_load_modules/_bibtex.py +62 -63
  246. scitex/io/_load_modules/_canvas.py +4 -9
  247. scitex/io/_load_modules/_catboost.py +7 -2
  248. scitex/io/_load_modules/_hdf5.py +2 -0
  249. scitex/io/_load_modules/_image.py +5 -1
  250. scitex/io/_load_modules/_matlab.py +3 -1
  251. scitex/io/_load_modules/_optuna.py +0 -1
  252. scitex/io/_load_modules/_pdf.py +38 -29
  253. scitex/io/_load_modules/_sqlite3.py +1 -0
  254. scitex/io/_load_modules/_txt.py +2 -0
  255. scitex/io/_load_modules/_xml.py +9 -9
  256. scitex/io/_load_modules/_zarr.py +12 -10
  257. scitex/io/_metadata.py +76 -37
  258. scitex/io/_qr_utils.py +18 -13
  259. scitex/io/_save.py +220 -63
  260. scitex/io/_save_modules/__init__.py +7 -2
  261. scitex/io/_save_modules/_bibtex.py +66 -61
  262. scitex/io/_save_modules/_canvas.py +5 -6
  263. scitex/io/_save_modules/_catboost.py +2 -2
  264. scitex/io/_save_modules/_csv.py +4 -4
  265. scitex/io/_save_modules/_excel.py +5 -9
  266. scitex/io/_save_modules/_hdf5.py +9 -21
  267. scitex/io/_save_modules/_html.py +5 -5
  268. scitex/io/_save_modules/_image.py +105 -8
  269. scitex/io/_save_modules/_joblib.py +2 -2
  270. scitex/io/_save_modules/_json.py +51 -6
  271. scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
  272. scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
  273. scitex/io/_save_modules/_matlab.py +2 -2
  274. scitex/io/_save_modules/_numpy.py +6 -8
  275. scitex/io/_save_modules/_pickle.py +4 -4
  276. scitex/io/_save_modules/_plotly.py +3 -3
  277. scitex/io/_save_modules/_tex.py +23 -25
  278. scitex/io/_save_modules/_text.py +2 -2
  279. scitex/io/_save_modules/_yaml.py +9 -9
  280. scitex/io/_save_modules/_zarr.py +15 -15
  281. scitex/io/utils/__init__.py +2 -1
  282. scitex/io/utils/h5_to_zarr.py +173 -155
  283. scitex/linalg/__init__.py +1 -1
  284. scitex/linalg/_geometric_median.py +4 -3
  285. scitex/logging/_Tee.py +5 -7
  286. scitex/logging/__init__.py +18 -19
  287. scitex/logging/_config.py +4 -1
  288. scitex/logging/_context.py +6 -5
  289. scitex/logging/_formatters.py +2 -3
  290. scitex/logging/_handlers.py +19 -20
  291. scitex/logging/_levels.py +9 -17
  292. scitex/logging/_logger.py +74 -15
  293. scitex/logging/_print_capture.py +17 -17
  294. scitex/nn/_BNet.py +1 -3
  295. scitex/nn/_Filters.py +6 -2
  296. scitex/nn/_ModulationIndex.py +3 -1
  297. scitex/nn/_PAC.py +3 -2
  298. scitex/nn/_PSD.py +0 -1
  299. scitex/nn/__init__.py +16 -3
  300. scitex/path/_clean.py +10 -8
  301. scitex/path/_find.py +1 -1
  302. scitex/path/_get_spath.py +1 -2
  303. scitex/path/_mk_spath.py +1 -1
  304. scitex/path/_symlink.py +5 -10
  305. scitex/pd/__init__.py +4 -1
  306. scitex/pd/_force_df.py +24 -24
  307. scitex/pd/_get_unique.py +1 -0
  308. scitex/pd/_merge_columns.py +1 -1
  309. scitex/pd/_round.py +11 -7
  310. scitex/pd/_to_xy.py +0 -1
  311. scitex/plt/REQUESTS.md +191 -0
  312. scitex/plt/__init__.py +185 -87
  313. scitex/plt/_subplots/_AxesWrapper.py +22 -6
  314. scitex/plt/_subplots/_AxisWrapper.py +100 -39
  315. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
  316. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
  317. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
  318. scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
  319. scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
  320. scitex/plt/_subplots/_FigWrapper.py +93 -60
  321. scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
  322. scitex/plt/_subplots/__init__.py +10 -0
  323. scitex/plt/_subplots/_export_as_csv.py +89 -47
  324. scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
  325. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
  326. scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
  327. scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
  328. scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
  329. scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
  330. scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
  331. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
  332. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
  333. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
  334. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
  335. scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
  336. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
  337. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
  338. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
  339. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
  340. scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
  341. scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
  342. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
  343. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
  344. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
  345. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
  346. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
  347. scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
  348. scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
  349. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
  350. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
  351. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
  352. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
  353. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
  354. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
  355. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
  356. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
  357. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
  358. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
  359. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
  360. scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
  361. scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
  362. scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
  363. scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
  364. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
  365. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
  366. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_fillv.py +35 -31
  367. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_heatmap.py +18 -18
  368. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_image.py +24 -18
  369. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_joyplot.py +9 -7
  370. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_line.py +34 -23
  371. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_mean_ci.py +15 -13
  372. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_mean_std.py +12 -10
  373. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_median_iqr.py +15 -13
  374. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_raster.py +11 -9
  375. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_rectangle.py +84 -56
  376. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_scatter_hist.py +35 -32
  377. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_shaded_line.py +46 -30
  378. scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_violin.py +51 -51
  379. scitex/plt/_subplots/_export_as_csv_formatters/_format_text.py +32 -31
  380. scitex/plt/_subplots/_export_as_csv_formatters/_format_violin.py +34 -31
  381. scitex/plt/_subplots/_export_as_csv_formatters/_format_violinplot.py +44 -37
  382. scitex/plt/_subplots/_export_as_csv_formatters/verify_formatters.py +91 -74
  383. scitex/plt/_tpl.py +6 -5
  384. scitex/plt/ax/_plot/__init__.py +24 -0
  385. scitex/plt/ax/_plot/_add_fitted_line.py +12 -11
  386. scitex/plt/ax/_plot/_plot_circular_hist.py +3 -1
  387. scitex/plt/ax/_plot/_plot_statistical_shaded_line.py +25 -19
  388. scitex/plt/ax/_plot/_stx_conf_mat.py +6 -3
  389. scitex/plt/ax/_plot/_stx_ecdf.py +5 -3
  390. scitex/plt/ax/_plot/_stx_fillv.py +4 -2
  391. scitex/plt/ax/_plot/_stx_heatmap.py +7 -4
  392. scitex/plt/ax/_plot/_stx_image.py +7 -5
  393. scitex/plt/ax/_plot/_stx_joyplot.py +32 -10
  394. scitex/plt/ax/_plot/_stx_raster.py +26 -11
  395. scitex/plt/ax/_plot/_stx_rectangle.py +2 -2
  396. scitex/plt/ax/_plot/_stx_shaded_line.py +15 -11
  397. scitex/plt/ax/_plot/_stx_violin.py +3 -1
  398. scitex/plt/ax/_style/_add_marginal_ax.py +6 -4
  399. scitex/plt/ax/_style/_auto_scale_axis.py +14 -10
  400. scitex/plt/ax/_style/_extend.py +3 -1
  401. scitex/plt/ax/_style/_force_aspect.py +5 -3
  402. scitex/plt/ax/_style/_format_units.py +2 -2
  403. scitex/plt/ax/_style/_hide_spines.py +5 -1
  404. scitex/plt/ax/_style/_map_ticks.py +5 -3
  405. scitex/plt/ax/_style/_rotate_labels.py +5 -4
  406. scitex/plt/ax/_style/_rotate_labels_v01.py +73 -63
  407. scitex/plt/ax/_style/_set_log_scale.py +120 -85
  408. scitex/plt/ax/_style/_set_meta.py +99 -76
  409. scitex/plt/ax/_style/_set_supxyt.py +33 -16
  410. scitex/plt/ax/_style/_set_xyt.py +27 -18
  411. scitex/plt/ax/_style/_share_axes.py +15 -5
  412. scitex/plt/ax/_style/_show_spines.py +58 -57
  413. scitex/plt/ax/_style/_style_barplot.py +1 -1
  414. scitex/plt/ax/_style/_style_boxplot.py +25 -14
  415. scitex/plt/ax/_style/_style_errorbar.py +0 -0
  416. scitex/plt/ax/_style/_style_scatter.py +1 -1
  417. scitex/plt/ax/_style/_style_suptitles.py +3 -3
  418. scitex/plt/ax/_style/_style_violinplot.py +8 -2
  419. scitex/plt/color/__init__.py +34 -2
  420. scitex/plt/color/_add_hue_col.py +1 -0
  421. scitex/plt/color/_colors.py +0 -1
  422. scitex/plt/color/_get_colors_from_conf_matap.py +3 -1
  423. scitex/plt/color/_vizualize_colors.py +0 -1
  424. scitex/plt/docs/FIGURE_ARCHITECTURE.md +155 -97
  425. scitex/plt/gallery/README.md +75 -0
  426. scitex/plt/gallery/__init__.py +29 -0
  427. scitex/plt/gallery/_generate.py +153 -0
  428. scitex/plt/gallery/_plots.py +594 -0
  429. scitex/plt/gallery/_registry.py +153 -0
  430. scitex/plt/styles/__init__.py +9 -9
  431. scitex/plt/styles/_plot_defaults.py +62 -61
  432. scitex/plt/styles/_plot_postprocess.py +126 -77
  433. scitex/plt/styles/_style_loader.py +0 -0
  434. scitex/plt/styles/presets.py +43 -18
  435. scitex/plt/templates/research-master/scitex/vis/gallery/area/fill_between.json +110 -0
  436. scitex/plt/templates/research-master/scitex/vis/gallery/area/fill_betweenx.json +88 -0
  437. scitex/plt/templates/research-master/scitex/vis/gallery/area/stx_fill_between.json +103 -0
  438. scitex/plt/templates/research-master/scitex/vis/gallery/area/stx_fillv.json +106 -0
  439. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/bar.json +92 -0
  440. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/barh.json +92 -0
  441. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/boxplot.json +92 -0
  442. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_bar.json +84 -0
  443. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_barh.json +84 -0
  444. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_box.json +83 -0
  445. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_boxplot.json +93 -0
  446. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_violin.json +91 -0
  447. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_violinplot.json +91 -0
  448. scitex/plt/templates/research-master/scitex/vis/gallery/categorical/violinplot.json +91 -0
  449. scitex/plt/templates/research-master/scitex/vis/gallery/contour/contour.json +97 -0
  450. scitex/plt/templates/research-master/scitex/vis/gallery/contour/contourf.json +98 -0
  451. scitex/plt/templates/research-master/scitex/vis/gallery/contour/stx_contour.json +84 -0
  452. scitex/plt/templates/research-master/scitex/vis/gallery/distribution/hist.json +101 -0
  453. scitex/plt/templates/research-master/scitex/vis/gallery/distribution/hist2d.json +96 -0
  454. scitex/plt/templates/research-master/scitex/vis/gallery/distribution/stx_ecdf.json +95 -0
  455. scitex/plt/templates/research-master/scitex/vis/gallery/distribution/stx_joyplot.json +95 -0
  456. scitex/plt/templates/research-master/scitex/vis/gallery/distribution/stx_kde.json +93 -0
  457. scitex/plt/templates/research-master/scitex/vis/gallery/grid/imshow.json +95 -0
  458. scitex/plt/templates/research-master/scitex/vis/gallery/grid/matshow.json +95 -0
  459. scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_conf_mat.json +83 -0
  460. scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_heatmap.json +92 -0
  461. scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_image.json +121 -0
  462. scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_imshow.json +84 -0
  463. scitex/plt/templates/research-master/scitex/vis/gallery/line/plot.json +110 -0
  464. scitex/plt/templates/research-master/scitex/vis/gallery/line/step.json +92 -0
  465. scitex/plt/templates/research-master/scitex/vis/gallery/line/stx_line.json +95 -0
  466. scitex/plt/templates/research-master/scitex/vis/gallery/line/stx_shaded_line.json +96 -0
  467. scitex/plt/templates/research-master/scitex/vis/gallery/scatter/hexbin.json +95 -0
  468. scitex/plt/templates/research-master/scitex/vis/gallery/scatter/scatter.json +95 -0
  469. scitex/plt/templates/research-master/scitex/vis/gallery/scatter/stem.json +92 -0
  470. scitex/plt/templates/research-master/scitex/vis/gallery/scatter/stx_scatter.json +84 -0
  471. scitex/plt/templates/research-master/scitex/vis/gallery/special/pie.json +94 -0
  472. scitex/plt/templates/research-master/scitex/vis/gallery/special/stx_raster.json +109 -0
  473. scitex/plt/templates/research-master/scitex/vis/gallery/special/stx_rectangle.json +108 -0
  474. scitex/plt/templates/research-master/scitex/vis/gallery/statistical/errorbar.json +93 -0
  475. scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_errorbar.json +84 -0
  476. scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_mean_ci.json +96 -0
  477. scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_mean_std.json +96 -0
  478. scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_median_iqr.json +96 -0
  479. scitex/plt/templates/research-master/scitex/vis/gallery/vector/quiver.json +99 -0
  480. scitex/plt/templates/research-master/scitex/vis/gallery/vector/streamplot.json +100 -0
  481. scitex/plt/utils/__init__.py +29 -2
  482. scitex/plt/utils/_close.py +8 -3
  483. scitex/plt/utils/_collect_figure_metadata.py +3031 -265
  484. scitex/plt/utils/_colorbar.py +15 -17
  485. scitex/plt/utils/_configure_mpl.py +22 -14
  486. scitex/plt/utils/_crop.py +60 -27
  487. scitex/plt/utils/_csv_column_naming.py +123 -72
  488. scitex/plt/utils/_dimension_viewer.py +7 -19
  489. scitex/plt/utils/_figure_from_axes_mm.py +70 -16
  490. scitex/plt/utils/_figure_mm.py +3 -2
  491. scitex/plt/utils/_get_actual_font.py +5 -4
  492. scitex/plt/utils/_histogram_utils.py +52 -48
  493. scitex/plt/utils/_is_valid_axis.py +19 -13
  494. scitex/plt/utils/_mk_colorbar.py +3 -3
  495. scitex/plt/utils/_scientific_captions.py +202 -139
  496. scitex/plt/utils/_scitex_config.py +98 -98
  497. scitex/plt/utils/_units.py +0 -0
  498. scitex/plt/utils/metadata/__init__.py +36 -0
  499. scitex/plt/utils/metadata/_artist_extraction.py +119 -0
  500. scitex/plt/utils/metadata/_axes_metadata.py +93 -0
  501. scitex/plt/utils/metadata/_collection_artists.py +292 -0
  502. scitex/plt/utils/metadata/_core.py +208 -0
  503. scitex/plt/utils/metadata/_csv_column_extraction.py +186 -0
  504. scitex/plt/utils/metadata/_csv_hash.py +115 -0
  505. scitex/plt/utils/metadata/_csv_verification.py +95 -0
  506. scitex/plt/utils/metadata/_data_linkage.py +263 -0
  507. scitex/plt/utils/metadata/_dimensions.py +239 -0
  508. scitex/plt/utils/metadata/_figure_metadata.py +58 -0
  509. scitex/plt/utils/metadata/_image_text_artists.py +168 -0
  510. scitex/plt/utils/metadata/_label_parsing.py +82 -0
  511. scitex/plt/utils/metadata/_legend_extraction.py +120 -0
  512. scitex/plt/utils/metadata/_line_artists.py +367 -0
  513. scitex/plt/utils/metadata/_line_semantic_handling.py +173 -0
  514. scitex/plt/utils/metadata/_patch_artists.py +211 -0
  515. scitex/plt/utils/metadata/_plot_content.py +26 -0
  516. scitex/plt/utils/metadata/_plot_type_detection.py +184 -0
  517. scitex/plt/utils/metadata/_precision.py +134 -0
  518. scitex/plt/utils/metadata/_precision_config.py +68 -0
  519. scitex/plt/utils/metadata/_precision_sections.py +211 -0
  520. scitex/plt/utils/metadata/_recipe_extraction.py +267 -0
  521. scitex/plt/utils/metadata/_style_parsing.py +174 -0
  522. scitex/repro/_RandomStateManager.py +33 -38
  523. scitex/repro/__init__.py +16 -7
  524. scitex/repro/_gen_ID.py +7 -9
  525. scitex/repro/_gen_timestamp.py +7 -6
  526. scitex/repro/_hash_array.py +8 -12
  527. scitex/reproduce/__init__.py +1 -1
  528. scitex/resource/_get_processor_usages.py +3 -1
  529. scitex/resource/_log_processor_usages.py +3 -1
  530. scitex/rng/__init__.py +1 -1
  531. scitex/schema/README.md +178 -0
  532. scitex/schema/__init__.py +144 -0
  533. scitex/schema/_canvas.py +444 -0
  534. scitex/schema/_stats.py +762 -0
  535. scitex/schema/_validation.py +590 -0
  536. scitex/scholar/.legacy/Scholar.py +5 -12
  537. scitex/scholar/.legacy/_Scholar.py +66 -99
  538. scitex/scholar/.legacy/_ScholarAPI.py +75 -66
  539. scitex/scholar/.legacy/_tmp/search_engine/_BaseSearchEngine.py +3 -3
  540. scitex/scholar/.legacy/_tmp/search_engine/_UnifiedSearcher.py +4 -9
  541. scitex/scholar/.legacy/_tmp/search_engine/__init__.py +14 -21
  542. scitex/scholar/.legacy/_tmp/search_engine/local/_LocalSearchEngine.py +40 -37
  543. scitex/scholar/.legacy/_tmp/search_engine/local/_VectorSearchEngine.py +31 -28
  544. scitex/scholar/.legacy/_tmp/search_engine/web/_ArxivSearchEngine.py +74 -65
  545. scitex/scholar/.legacy/_tmp/search_engine/web/_CrossRefSearchEngine.py +122 -116
  546. scitex/scholar/.legacy/_tmp/search_engine/web/_GoogleScholarSearchEngine.py +65 -59
  547. scitex/scholar/.legacy/_tmp/search_engine/web/_PubMedSearchEngine.py +121 -107
  548. scitex/scholar/.legacy/_tmp/search_engine/web/_SemanticScholarSearchEngine.py +5 -12
  549. scitex/scholar/.legacy/database/_DatabaseEntry.py +49 -45
  550. scitex/scholar/.legacy/database/_DatabaseIndex.py +131 -94
  551. scitex/scholar/.legacy/database/_LibraryManager.py +65 -63
  552. scitex/scholar/.legacy/database/_PaperDatabase.py +138 -124
  553. scitex/scholar/.legacy/database/_ScholarDatabaseIntegration.py +14 -36
  554. scitex/scholar/.legacy/database/_StorageIntegratedDB.py +192 -156
  555. scitex/scholar/.legacy/database/_ZoteroCompatibleDB.py +300 -237
  556. scitex/scholar/.legacy/database/__init__.py +2 -1
  557. scitex/scholar/.legacy/database/manage.py +92 -84
  558. scitex/scholar/.legacy/lookup/_LookupIndex.py +157 -101
  559. scitex/scholar/.legacy/lookup/__init__.py +2 -1
  560. scitex/scholar/.legacy/metadata/doi/batch/_MetadataHandlerForBatchDOIResolution.py +4 -9
  561. scitex/scholar/.legacy/metadata/doi/batch/_ProgressManagerForBatchDOIResolution.py +10 -23
  562. scitex/scholar/.legacy/metadata/doi/batch/_SourceStatsManagerForBatchDOIResolution.py +4 -9
  563. scitex/scholar/.legacy/metadata/doi/batch/__init__.py +3 -1
  564. scitex/scholar/.legacy/metadata/doi/resolvers/_BatchDOIResolver.py +10 -25
  565. scitex/scholar/.legacy/metadata/doi/resolvers/_BibTeXDOIResolver.py +19 -49
  566. scitex/scholar/.legacy/metadata/doi/resolvers/_DOIResolver.py +1 -0
  567. scitex/scholar/.legacy/metadata/doi/resolvers/_SingleDOIResolver.py +8 -20
  568. scitex/scholar/.legacy/metadata/doi/sources/.combined-SemanticScholarSource/_SemanticScholarSource.py +37 -35
  569. scitex/scholar/.legacy/metadata/doi/sources/.combined-SemanticScholarSource/_SemanticScholarSourceEnhanced.py +49 -37
  570. scitex/scholar/.legacy/metadata/doi/sources/_ArXivSource.py +11 -30
  571. scitex/scholar/.legacy/metadata/doi/sources/_BaseDOISource.py +19 -47
  572. scitex/scholar/.legacy/metadata/doi/sources/_CrossRefLocalSource.py +1 -0
  573. scitex/scholar/.legacy/metadata/doi/sources/_CrossRefSource.py +12 -33
  574. scitex/scholar/.legacy/metadata/doi/sources/_OpenAlexSource.py +8 -20
  575. scitex/scholar/.legacy/metadata/doi/sources/_PubMedSource.py +10 -27
  576. scitex/scholar/.legacy/metadata/doi/sources/_SemanticScholarSource.py +11 -29
  577. scitex/scholar/.legacy/metadata/doi/sources/_SourceManager.py +8 -21
  578. scitex/scholar/.legacy/metadata/doi/sources/_SourceResolutionStrategy.py +24 -55
  579. scitex/scholar/.legacy/metadata/doi/sources/_SourceRotationManager.py +8 -21
  580. scitex/scholar/.legacy/metadata/doi/sources/_URLDOISource.py +9 -16
  581. scitex/scholar/.legacy/metadata/doi/sources/_UnifiedSource.py +8 -22
  582. scitex/scholar/.legacy/metadata/doi/sources/__init__.py +1 -0
  583. scitex/scholar/.legacy/metadata/doi/utils/_PubMedConverter.py +4 -8
  584. scitex/scholar/.legacy/metadata/doi/utils/_RateLimitHandler.py +17 -43
  585. scitex/scholar/.legacy/metadata/doi/utils/_TextNormalizer.py +8 -18
  586. scitex/scholar/.legacy/metadata/doi/utils/_URLDOIExtractor.py +4 -8
  587. scitex/scholar/.legacy/metadata/doi/utils/__init__.py +1 -0
  588. scitex/scholar/.legacy/metadata/doi/utils/_to_complete_metadata_structure.py +1 -0
  589. scitex/scholar/.legacy/metadata/enrichment/_LibraryEnricher.py +2 -3
  590. scitex/scholar/.legacy/metadata/enrichment/enrichers/_ImpactFactorEnricher.py +6 -12
  591. scitex/scholar/.legacy/metadata/enrichment/enrichers/_SmartEnricher.py +5 -10
  592. scitex/scholar/.legacy/metadata/enrichment/sources/_UnifiedMetadataSource.py +4 -5
  593. scitex/scholar/.legacy/metadata/query_to_full_meta_json.py +8 -12
  594. scitex/scholar/.legacy/metadata/urls/_URLMetadataHandler.py +3 -3
  595. scitex/scholar/.legacy/metadata/urls/_ZoteroTranslatorRunner.py +15 -21
  596. scitex/scholar/.legacy/metadata/urls/__init__.py +3 -3
  597. scitex/scholar/.legacy/metadata/urls/_finder.py +4 -6
  598. scitex/scholar/.legacy/metadata/urls/_handler.py +7 -15
  599. scitex/scholar/.legacy/metadata/urls/_resolver.py +6 -12
  600. scitex/scholar/.legacy/search/_Embedder.py +74 -69
  601. scitex/scholar/.legacy/search/_SemanticSearch.py +91 -90
  602. scitex/scholar/.legacy/search/_SemanticSearchEngine.py +104 -109
  603. scitex/scholar/.legacy/search/_UnifiedSearcher.py +530 -471
  604. scitex/scholar/.legacy/search/_VectorDatabase.py +111 -92
  605. scitex/scholar/.legacy/search/__init__.py +1 -0
  606. scitex/scholar/.legacy/storage/_EnhancedStorageManager.py +182 -154
  607. scitex/scholar/.legacy/storage/__init__.py +2 -1
  608. scitex/scholar/__init__.py +0 -2
  609. scitex/scholar/__main__.py +1 -3
  610. scitex/scholar/auth/ScholarAuthManager.py +13 -36
  611. scitex/scholar/auth/core/AuthenticationGateway.py +15 -29
  612. scitex/scholar/auth/core/BrowserAuthenticator.py +22 -57
  613. scitex/scholar/auth/core/StrategyResolver.py +10 -27
  614. scitex/scholar/auth/core/__init__.py +5 -1
  615. scitex/scholar/auth/gateway/_OpenURLLinkFinder.py +11 -21
  616. scitex/scholar/auth/gateway/_OpenURLResolver.py +10 -18
  617. scitex/scholar/auth/gateway/_resolve_functions.py +3 -3
  618. scitex/scholar/auth/providers/BaseAuthenticator.py +1 -0
  619. scitex/scholar/auth/providers/EZProxyAuthenticator.py +7 -14
  620. scitex/scholar/auth/providers/OpenAthensAuthenticator.py +29 -57
  621. scitex/scholar/auth/providers/ShibbolethAuthenticator.py +87 -73
  622. scitex/scholar/auth/session/AuthCacheManager.py +12 -22
  623. scitex/scholar/auth/session/SessionManager.py +4 -6
  624. scitex/scholar/auth/sso/BaseSSOAutomator.py +13 -19
  625. scitex/scholar/auth/sso/OpenAthensSSOAutomator.py +16 -45
  626. scitex/scholar/auth/sso/SSOAutomator.py +8 -15
  627. scitex/scholar/auth/sso/UniversityOfMelbourneSSOAutomator.py +13 -23
  628. scitex/scholar/browser/ScholarBrowserManager.py +31 -56
  629. scitex/scholar/browser/__init__.py +1 -0
  630. scitex/scholar/browser/utils/click_and_wait.py +3 -4
  631. scitex/scholar/browser/utils/close_unwanted_pages.py +4 -7
  632. scitex/scholar/browser/utils/wait_redirects.py +15 -40
  633. scitex/scholar/citation_graph/__init__.py +0 -0
  634. scitex/scholar/citation_graph/builder.py +3 -7
  635. scitex/scholar/citation_graph/database.py +4 -11
  636. scitex/scholar/citation_graph/example.py +5 -10
  637. scitex/scholar/citation_graph/models.py +0 -0
  638. scitex/scholar/cli/_url_utils.py +1 -1
  639. scitex/scholar/cli/chrome.py +5 -3
  640. scitex/scholar/cli/download_pdf.py +13 -14
  641. scitex/scholar/cli/handlers/bibtex_handler.py +4 -12
  642. scitex/scholar/cli/handlers/doi_handler.py +1 -3
  643. scitex/scholar/cli/handlers/project_handler.py +6 -20
  644. scitex/scholar/cli/open_browser.py +41 -39
  645. scitex/scholar/cli/open_browser_auto.py +31 -39
  646. scitex/scholar/cli/open_browser_monitored.py +27 -24
  647. scitex/scholar/config/ScholarConfig.py +5 -8
  648. scitex/scholar/config/__init__.py +1 -0
  649. scitex/scholar/config/core/_CascadeConfig.py +3 -3
  650. scitex/scholar/config/core/_PathManager.py +16 -28
  651. scitex/scholar/core/Paper.py +79 -78
  652. scitex/scholar/core/Papers.py +16 -27
  653. scitex/scholar/core/Scholar.py +98 -229
  654. scitex/scholar/core/journal_normalizer.py +52 -49
  655. scitex/scholar/core/oa_cache.py +27 -23
  656. scitex/scholar/core/open_access.py +17 -8
  657. scitex/scholar/docs/template.py +4 -3
  658. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/clf_svm.py +0 -0
  659. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/download.py +0 -0
  660. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_conf_mat.py +0 -0
  661. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_digits.py +0 -0
  662. scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_umap_space.py +0 -0
  663. scitex/scholar/examples/00_config.py +10 -9
  664. scitex/scholar/examples/01_auth.py +3 -0
  665. scitex/scholar/examples/02_browser.py +14 -10
  666. scitex/scholar/examples/03_01-engine.py +3 -0
  667. scitex/scholar/examples/03_02-engine-for-bibtex.py +4 -3
  668. scitex/scholar/examples/04_01-url.py +9 -9
  669. scitex/scholar/examples/04_02-url-for-bibtex.py +7 -3
  670. scitex/scholar/examples/04_02-url-for-dois.py +87 -97
  671. scitex/scholar/examples/05_download_pdf.py +10 -4
  672. scitex/scholar/examples/06_find_and_download.py +6 -6
  673. scitex/scholar/examples/06_parse_bibtex.py +17 -17
  674. scitex/scholar/examples/07_storage_integration.py +6 -9
  675. scitex/scholar/examples/99_fullpipeline-for-bibtex.py +14 -15
  676. scitex/scholar/examples/99_fullpipeline-for-one-entry.py +31 -23
  677. scitex/scholar/examples/99_maintenance.py +3 -0
  678. scitex/scholar/examples/dev.py +2 -3
  679. scitex/scholar/examples/zotero_integration.py +11 -18
  680. scitex/scholar/impact_factor/ImpactFactorEngine.py +7 -9
  681. scitex/scholar/impact_factor/estimation/__init__.py +4 -4
  682. scitex/scholar/impact_factor/estimation/core/__init__.py +3 -7
  683. scitex/scholar/impact_factor/estimation/core/cache_manager.py +223 -211
  684. scitex/scholar/impact_factor/estimation/core/calculator.py +165 -131
  685. scitex/scholar/impact_factor/estimation/core/journal_matcher.py +217 -172
  686. scitex/scholar/impact_factor/jcr/ImpactFactorJCREngine.py +6 -14
  687. scitex/scholar/impact_factor/jcr/build_database.py +4 -3
  688. scitex/scholar/integration/base.py +9 -17
  689. scitex/scholar/integration/mendeley/exporter.py +2 -4
  690. scitex/scholar/integration/mendeley/importer.py +3 -3
  691. scitex/scholar/integration/mendeley/linker.py +3 -3
  692. scitex/scholar/integration/mendeley/mapper.py +9 -6
  693. scitex/scholar/integration/zotero/__main__.py +26 -43
  694. scitex/scholar/integration/zotero/exporter.py +15 -11
  695. scitex/scholar/integration/zotero/importer.py +12 -10
  696. scitex/scholar/integration/zotero/linker.py +8 -12
  697. scitex/scholar/integration/zotero/mapper.py +17 -12
  698. scitex/scholar/metadata_engines/.combined-SemanticScholarSource/_SemanticScholarSource.py +37 -35
  699. scitex/scholar/metadata_engines/.combined-SemanticScholarSource/_SemanticScholarSourceEnhanced.py +47 -35
  700. scitex/scholar/metadata_engines/ScholarEngine.py +21 -43
  701. scitex/scholar/metadata_engines/__init__.py +1 -0
  702. scitex/scholar/metadata_engines/individual/ArXivEngine.py +15 -37
  703. scitex/scholar/metadata_engines/individual/CrossRefEngine.py +15 -42
  704. scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py +24 -45
  705. scitex/scholar/metadata_engines/individual/OpenAlexEngine.py +11 -21
  706. scitex/scholar/metadata_engines/individual/PubMedEngine.py +10 -27
  707. scitex/scholar/metadata_engines/individual/SemanticScholarEngine.py +28 -35
  708. scitex/scholar/metadata_engines/individual/URLDOIEngine.py +11 -22
  709. scitex/scholar/metadata_engines/individual/_BaseDOIEngine.py +20 -49
  710. scitex/scholar/metadata_engines/utils/_PubMedConverter.py +4 -8
  711. scitex/scholar/metadata_engines/utils/_URLDOIExtractor.py +5 -10
  712. scitex/scholar/metadata_engines/utils/__init__.py +2 -0
  713. scitex/scholar/metadata_engines/utils/_metadata2bibtex.py +3 -0
  714. scitex/scholar/metadata_engines/utils/_standardize_metadata.py +2 -3
  715. scitex/scholar/pdf_download/ScholarPDFDownloader.py +25 -37
  716. scitex/scholar/pdf_download/strategies/chrome_pdf_viewer.py +11 -19
  717. scitex/scholar/pdf_download/strategies/direct_download.py +5 -9
  718. scitex/scholar/pdf_download/strategies/manual_download_fallback.py +3 -3
  719. scitex/scholar/pdf_download/strategies/manual_download_utils.py +6 -13
  720. scitex/scholar/pdf_download/strategies/open_access_download.py +49 -31
  721. scitex/scholar/pdf_download/strategies/response_body.py +8 -19
  722. scitex/scholar/pipelines/ScholarPipelineBibTeX.py +9 -18
  723. scitex/scholar/pipelines/ScholarPipelineMetadataParallel.py +25 -26
  724. scitex/scholar/pipelines/ScholarPipelineMetadataSingle.py +62 -23
  725. scitex/scholar/pipelines/ScholarPipelineParallel.py +13 -30
  726. scitex/scholar/pipelines/ScholarPipelineSearchParallel.py +299 -220
  727. scitex/scholar/pipelines/ScholarPipelineSearchSingle.py +202 -165
  728. scitex/scholar/pipelines/ScholarPipelineSingle.py +25 -51
  729. scitex/scholar/pipelines/SearchQueryParser.py +55 -55
  730. scitex/scholar/search_engines/ScholarSearchEngine.py +31 -27
  731. scitex/scholar/search_engines/_BaseSearchEngine.py +20 -23
  732. scitex/scholar/search_engines/individual/ArXivSearchEngine.py +53 -35
  733. scitex/scholar/search_engines/individual/CrossRefSearchEngine.py +47 -40
  734. scitex/scholar/search_engines/individual/OpenAlexSearchEngine.py +55 -50
  735. scitex/scholar/search_engines/individual/PubMedSearchEngine.py +8 -10
  736. scitex/scholar/search_engines/individual/SemanticScholarSearchEngine.py +55 -49
  737. scitex/scholar/storage/BibTeXHandler.py +150 -95
  738. scitex/scholar/storage/PaperIO.py +3 -6
  739. scitex/scholar/storage/ScholarLibrary.py +70 -49
  740. scitex/scholar/storage/_DeduplicationManager.py +52 -25
  741. scitex/scholar/storage/_LibraryCacheManager.py +19 -46
  742. scitex/scholar/storage/_LibraryManager.py +65 -175
  743. scitex/scholar/url_finder/ScholarURLFinder.py +9 -25
  744. scitex/scholar/url_finder/strategies/find_pdf_urls_by_direct_links.py +1 -1
  745. scitex/scholar/url_finder/strategies/find_pdf_urls_by_href.py +6 -10
  746. scitex/scholar/url_finder/strategies/find_pdf_urls_by_navigation.py +4 -6
  747. scitex/scholar/url_finder/strategies/find_pdf_urls_by_publisher_patterns.py +8 -15
  748. scitex/scholar/url_finder/strategies/find_pdf_urls_by_zotero_translators.py +3 -3
  749. scitex/scholar/url_finder/strategies/find_supplementary_urls_by_href.py +3 -3
  750. scitex/scholar/url_finder/translators/core/patterns.py +6 -4
  751. scitex/scholar/url_finder/translators/core/registry.py +6 -9
  752. scitex/scholar/url_finder/translators/individual/BOFiP_Impots.py +60 -52
  753. scitex/scholar/url_finder/translators/individual/Baidu_Scholar.py +54 -62
  754. scitex/scholar/url_finder/translators/individual/Bangkok_Post.py +38 -44
  755. scitex/scholar/url_finder/translators/individual/Baruch_Foundation.py +43 -47
  756. scitex/scholar/url_finder/translators/individual/Beobachter.py +46 -50
  757. scitex/scholar/url_finder/translators/individual/Bezneng_Gajit.py +37 -41
  758. scitex/scholar/url_finder/translators/individual/BibLaTeX.py +59 -52
  759. scitex/scholar/url_finder/translators/individual/BibTeX.py +83 -79
  760. scitex/scholar/url_finder/translators/individual/Biblio_com.py +48 -51
  761. scitex/scholar/url_finder/translators/individual/Bibliontology_RDF.py +58 -56
  762. scitex/scholar/url_finder/translators/individual/Camara_Brasileira_do_Livro_ISBN.py +102 -99
  763. scitex/scholar/url_finder/translators/individual/CanLII.py +49 -43
  764. scitex/scholar/url_finder/translators/individual/Canada_com.py +36 -40
  765. scitex/scholar/url_finder/translators/individual/Canadian_Letters_and_Images.py +43 -43
  766. scitex/scholar/url_finder/translators/individual/Canadiana_ca.py +77 -66
  767. scitex/scholar/url_finder/translators/individual/Cascadilla_Proceedings_Project.py +68 -62
  768. scitex/scholar/url_finder/translators/individual/Central_and_Eastern_European_Online_Library_Journals.py +60 -60
  769. scitex/scholar/url_finder/translators/individual/Champlain_Society_Collection.py +63 -61
  770. scitex/scholar/url_finder/translators/individual/Chicago_Journal_of_Theoretical_Computer_Science.py +74 -58
  771. scitex/scholar/url_finder/translators/individual/Christian_Science_Monitor.py +32 -38
  772. scitex/scholar/url_finder/translators/individual/Columbia_University_Press.py +51 -47
  773. scitex/scholar/url_finder/translators/individual/Common_Place.py +66 -57
  774. scitex/scholar/url_finder/translators/individual/Cornell_LII.py +66 -62
  775. scitex/scholar/url_finder/translators/individual/Cornell_University_Press.py +38 -45
  776. scitex/scholar/url_finder/translators/individual/CourtListener.py +52 -56
  777. scitex/scholar/url_finder/translators/individual/DAI_Zenon.py +53 -54
  778. scitex/scholar/url_finder/translators/individual/access_medicine.py +27 -33
  779. scitex/scholar/url_finder/translators/individual/acm.py +1 -1
  780. scitex/scholar/url_finder/translators/individual/acm_digital_library.py +93 -63
  781. scitex/scholar/url_finder/translators/individual/airiti.py +3 -1
  782. scitex/scholar/url_finder/translators/individual/aosic.py +3 -1
  783. scitex/scholar/url_finder/translators/individual/archive_ouverte_aosic.py +3 -1
  784. scitex/scholar/url_finder/translators/individual/archive_ouverte_en_sciences_de_l_information_et_de_la_communication___aosic_.py +6 -2
  785. scitex/scholar/url_finder/translators/individual/artforum.py +35 -27
  786. scitex/scholar/url_finder/translators/individual/arxiv.py +1 -1
  787. scitex/scholar/url_finder/translators/individual/arxiv_org.py +8 -4
  788. scitex/scholar/url_finder/translators/individual/atlanta_journal_constitution.py +22 -18
  789. scitex/scholar/url_finder/translators/individual/atypon_journals.py +19 -11
  790. scitex/scholar/url_finder/translators/individual/austlii_and_nzlii.py +48 -44
  791. scitex/scholar/url_finder/translators/individual/australian_dictionary_of_biography.py +21 -17
  792. scitex/scholar/url_finder/translators/individual/bailii.py +22 -19
  793. scitex/scholar/url_finder/translators/individual/bbc.py +46 -42
  794. scitex/scholar/url_finder/translators/individual/bbc_genome.py +37 -25
  795. scitex/scholar/url_finder/translators/individual/biblioteca_nacional_de_maestros.py +24 -20
  796. scitex/scholar/url_finder/translators/individual/bibliotheque_archives_nationale_quebec_pistard.py +42 -43
  797. scitex/scholar/url_finder/translators/individual/bibliotheque_archives_nationales_quebec.py +87 -81
  798. scitex/scholar/url_finder/translators/individual/bibliotheque_nationale_france.py +39 -37
  799. scitex/scholar/url_finder/translators/individual/bibsys.py +32 -28
  800. scitex/scholar/url_finder/translators/individual/bioconductor.py +58 -52
  801. scitex/scholar/url_finder/translators/individual/biomed_central.py +23 -15
  802. scitex/scholar/url_finder/translators/individual/biorxiv.py +26 -13
  803. scitex/scholar/url_finder/translators/individual/blogger.py +39 -43
  804. scitex/scholar/url_finder/translators/individual/bloomberg.py +48 -52
  805. scitex/scholar/url_finder/translators/individual/bloomsbury_food_library.py +37 -37
  806. scitex/scholar/url_finder/translators/individual/bluesky.py +30 -28
  807. scitex/scholar/url_finder/translators/individual/bnf_isbn.py +1 -1
  808. scitex/scholar/url_finder/translators/individual/bocc.py +66 -60
  809. scitex/scholar/url_finder/translators/individual/boe.py +52 -52
  810. scitex/scholar/url_finder/translators/individual/brill.py +3 -1
  811. scitex/scholar/url_finder/translators/individual/business_standard.py +36 -38
  812. scitex/scholar/url_finder/translators/individual/cabi_cab_abstracts.py +39 -41
  813. scitex/scholar/url_finder/translators/individual/cambridge.py +3 -1
  814. scitex/scholar/url_finder/translators/individual/cambridge_core.py +30 -24
  815. scitex/scholar/url_finder/translators/individual/caod.py +50 -46
  816. scitex/scholar/url_finder/translators/individual/cbc.py +91 -67
  817. scitex/scholar/url_finder/translators/individual/ccfr_bnf.py +49 -53
  818. scitex/scholar/url_finder/translators/individual/cia_world_factbook.py +43 -33
  819. scitex/scholar/url_finder/translators/individual/crossref_rest.py +208 -174
  820. scitex/scholar/url_finder/translators/individual/current_affairs.py +29 -35
  821. scitex/scholar/url_finder/translators/individual/dabi.py +70 -66
  822. scitex/scholar/url_finder/translators/individual/dagens_nyheter.py +3 -1
  823. scitex/scholar/url_finder/translators/individual/dagstuhl.py +10 -15
  824. scitex/scholar/url_finder/translators/individual/dar_almandumah.py +13 -9
  825. scitex/scholar/url_finder/translators/individual/dart_europe.py +19 -22
  826. scitex/scholar/url_finder/translators/individual/data_gov.py +2 -2
  827. scitex/scholar/url_finder/translators/individual/databrary.py +27 -28
  828. scitex/scholar/url_finder/translators/individual/datacite_json.py +152 -137
  829. scitex/scholar/url_finder/translators/individual/dataverse.py +68 -64
  830. scitex/scholar/url_finder/translators/individual/daum_news.py +38 -38
  831. scitex/scholar/url_finder/translators/individual/dblp.py +4 -8
  832. scitex/scholar/url_finder/translators/individual/dblp_computer_science_bibliography.py +8 -3
  833. scitex/scholar/url_finder/translators/individual/dbpia.py +5 -3
  834. scitex/scholar/url_finder/translators/individual/defense_technical_information_center.py +30 -28
  835. scitex/scholar/url_finder/translators/individual/delpher.py +102 -79
  836. scitex/scholar/url_finder/translators/individual/demographic_research.py +35 -31
  837. scitex/scholar/url_finder/translators/individual/denik_cz.py +58 -54
  838. scitex/scholar/url_finder/translators/individual/depatisnet.py +7 -10
  839. scitex/scholar/url_finder/translators/individual/der_freitag.py +81 -66
  840. scitex/scholar/url_finder/translators/individual/der_spiegel.py +56 -54
  841. scitex/scholar/url_finder/translators/individual/digibib_net.py +3 -1
  842. scitex/scholar/url_finder/translators/individual/digizeitschriften.py +3 -1
  843. scitex/scholar/url_finder/translators/individual/dpla.py +13 -14
  844. scitex/scholar/url_finder/translators/individual/dspace.py +2 -2
  845. scitex/scholar/url_finder/translators/individual/ebrary.py +3 -1
  846. scitex/scholar/url_finder/translators/individual/ebscohost.py +3 -1
  847. scitex/scholar/url_finder/translators/individual/electronic_colloquium_on_computational_complexity.py +3 -1
  848. scitex/scholar/url_finder/translators/individual/elife.py +3 -1
  849. scitex/scholar/url_finder/translators/individual/elsevier_health_journals.py +3 -1
  850. scitex/scholar/url_finder/translators/individual/emerald.py +3 -1
  851. scitex/scholar/url_finder/translators/individual/emerald_insight.py +3 -1
  852. scitex/scholar/url_finder/translators/individual/epicurious.py +3 -1
  853. scitex/scholar/url_finder/translators/individual/eurogamerusgamer.py +3 -1
  854. scitex/scholar/url_finder/translators/individual/fachportal_padagogik.py +3 -1
  855. scitex/scholar/url_finder/translators/individual/frontiers.py +1 -1
  856. scitex/scholar/url_finder/translators/individual/gale_databases.py +3 -1
  857. scitex/scholar/url_finder/translators/individual/gms_german_medical_science.py +6 -2
  858. scitex/scholar/url_finder/translators/individual/ieee_computer_society.py +6 -2
  859. scitex/scholar/url_finder/translators/individual/ieee_xplore.py +41 -35
  860. scitex/scholar/url_finder/translators/individual/inter_research_science_center.py +6 -2
  861. scitex/scholar/url_finder/translators/individual/jisc_historical_texts.py +3 -1
  862. scitex/scholar/url_finder/translators/individual/jstor.py +14 -12
  863. scitex/scholar/url_finder/translators/individual/korean_national_library.py +3 -1
  864. scitex/scholar/url_finder/translators/individual/la_times.py +3 -1
  865. scitex/scholar/url_finder/translators/individual/landesbibliographie_baden_wurttemberg.py +3 -1
  866. scitex/scholar/url_finder/translators/individual/legislative_insight.py +3 -1
  867. scitex/scholar/url_finder/translators/individual/libraries_tasmania.py +3 -1
  868. scitex/scholar/url_finder/translators/individual/library_catalog__koha_.py +3 -1
  869. scitex/scholar/url_finder/translators/individual/lingbuzz.py +2 -2
  870. scitex/scholar/url_finder/translators/individual/max_planck_institute_for_the_history_of_science_virtual_laboratory_library.py +3 -1
  871. scitex/scholar/url_finder/translators/individual/mdpi.py +12 -6
  872. scitex/scholar/url_finder/translators/individual/microbiology_society_journals.py +3 -1
  873. scitex/scholar/url_finder/translators/individual/midas_journals.py +3 -1
  874. scitex/scholar/url_finder/translators/individual/nagoya_university_opac.py +3 -1
  875. scitex/scholar/url_finder/translators/individual/nature_publishing_group.py +32 -19
  876. scitex/scholar/url_finder/translators/individual/ntsb_accident_reports.py +3 -1
  877. scitex/scholar/url_finder/translators/individual/openedition_journals.py +8 -4
  878. scitex/scholar/url_finder/translators/individual/orcid.py +16 -15
  879. scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
  880. scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
  881. scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
  882. scitex/scholar/url_finder/translators/individual/plos.py +9 -12
  883. scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
  884. scitex/scholar/url_finder/translators/individual/primo.py +3 -1
  885. scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
  886. scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
  887. scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
  888. scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
  889. scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
  890. scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
  891. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  892. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  893. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  894. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  895. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  896. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  897. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  898. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  899. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  900. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  901. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  902. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  903. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  904. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  905. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  906. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  907. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  908. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  909. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  910. scitex/scholar/utils/validation/__init__.py +0 -0
  911. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  912. scitex/scholar/zotero/__init__.py +1 -1
  913. scitex/security/cli.py +7 -20
  914. scitex/security/github.py +45 -32
  915. scitex/session/__init__.py +8 -9
  916. scitex/session/_decorator.py +49 -42
  917. scitex/session/_lifecycle.py +39 -39
  918. scitex/session/_manager.py +24 -20
  919. scitex/sh/__init__.py +4 -3
  920. scitex/sh/_execute.py +10 -7
  921. scitex/sh/_security.py +3 -3
  922. scitex/sh/_types.py +2 -3
  923. scitex/stats/__init__.py +57 -6
  924. scitex/stats/_schema.py +42 -569
  925. scitex/stats/auto/__init__.py +188 -0
  926. scitex/stats/auto/_context.py +331 -0
  927. scitex/stats/auto/_formatting.py +679 -0
  928. scitex/stats/auto/_rules.py +901 -0
  929. scitex/stats/auto/_selector.py +554 -0
  930. scitex/stats/auto/_styles.py +721 -0
  931. scitex/stats/correct/__init__.py +4 -4
  932. scitex/stats/correct/_correct_bonferroni.py +43 -34
  933. scitex/stats/correct/_correct_fdr.py +14 -40
  934. scitex/stats/correct/_correct_fdr_.py +39 -46
  935. scitex/stats/correct/_correct_holm.py +14 -32
  936. scitex/stats/correct/_correct_sidak.py +36 -21
  937. scitex/stats/descriptive/_circular.py +20 -21
  938. scitex/stats/descriptive/_describe.py +19 -5
  939. scitex/stats/descriptive/_nan.py +5 -7
  940. scitex/stats/descriptive/_real.py +4 -3
  941. scitex/stats/effect_sizes/__init__.py +10 -11
  942. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  943. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  944. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  945. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  946. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  947. scitex/stats/posthoc/__init__.py +3 -3
  948. scitex/stats/posthoc/_dunnett.py +75 -55
  949. scitex/stats/posthoc/_games_howell.py +61 -43
  950. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  951. scitex/stats/power/__init__.py +2 -2
  952. scitex/stats/power/_power.py +56 -56
  953. scitex/stats/tests/__init__.py +1 -1
  954. scitex/stats/tests/correlation/__init__.py +1 -1
  955. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  956. scitex/stats/utils/__init__.py +14 -17
  957. scitex/stats/utils/_effect_size.py +85 -78
  958. scitex/stats/utils/_formatters.py +49 -43
  959. scitex/stats/utils/_normalizers.py +7 -14
  960. scitex/stats/utils/_power.py +56 -56
  961. scitex/str/__init__.py +1 -0
  962. scitex/str/_clean_path.py +3 -3
  963. scitex/str/_factor_out_digits.py +86 -58
  964. scitex/str/_format_plot_text.py +180 -111
  965. scitex/str/_latex.py +19 -19
  966. scitex/str/_latex_fallback.py +9 -10
  967. scitex/str/_parse.py +3 -6
  968. scitex/str/_print_debug.py +13 -13
  969. scitex/str/_printc.py +2 -0
  970. scitex/str/_search.py +3 -3
  971. scitex/template/.legacy/_clone_project.py +9 -13
  972. scitex/template/__init__.py +10 -2
  973. scitex/template/_clone_project.py +7 -2
  974. scitex/template/_copy.py +1 -0
  975. scitex/template/_customize.py +3 -6
  976. scitex/template/_git_strategy.py +2 -3
  977. scitex/template/_rename.py +1 -0
  978. scitex/template/clone_pip_project.py +6 -7
  979. scitex/template/clone_research.py +7 -10
  980. scitex/template/clone_singularity.py +6 -7
  981. scitex/template/clone_writer_directory.py +6 -7
  982. scitex/tex/_preview.py +26 -11
  983. scitex/tex/_to_vec.py +10 -7
  984. scitex/torch/__init__.py +11 -1
  985. scitex/types/_ArrayLike.py +2 -0
  986. scitex/types/_is_listed_X.py +3 -3
  987. scitex/units.py +110 -77
  988. scitex/utils/_compress_hdf5.py +3 -3
  989. scitex/utils/_email.py +8 -4
  990. scitex/utils/_notify.py +14 -8
  991. scitex/utils/_search.py +6 -6
  992. scitex/utils/_verify_scitex_format.py +17 -42
  993. scitex/utils/_verify_scitex_format_v01.py +12 -34
  994. scitex/utils/template.py +4 -3
  995. scitex/vis/__init__.py +0 -0
  996. scitex/vis/backend/__init__.py +3 -3
  997. scitex/vis/backend/{export.py → _export.py} +1 -1
  998. scitex/vis/backend/{parser.py → _parser.py} +1 -3
  999. scitex/vis/backend/{render.py → _render.py} +1 -1
  1000. scitex/vis/canvas.py +15 -3
  1001. scitex/vis/editor/__init__.py +0 -0
  1002. scitex/vis/editor/_dearpygui_editor.py +450 -304
  1003. scitex/vis/editor/_defaults.py +114 -123
  1004. scitex/vis/editor/_edit.py +38 -26
  1005. scitex/vis/editor/_flask_editor.py +8 -8
  1006. scitex/vis/editor/_mpl_editor.py +63 -48
  1007. scitex/vis/editor/_qt_editor.py +210 -159
  1008. scitex/vis/editor/_tkinter_editor.py +146 -89
  1009. scitex/vis/editor/flask_editor/__init__.py +10 -10
  1010. scitex/vis/editor/flask_editor/_bbox.py +529 -0
  1011. scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
  1012. scitex/vis/editor/flask_editor/_plotter.py +567 -0
  1013. scitex/vis/editor/flask_editor/_renderer.py +393 -0
  1014. scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
  1015. scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
  1016. scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
  1017. scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
  1018. scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
  1019. scitex/vis/io/__init__.py +5 -5
  1020. scitex/vis/io/{canvas.py → _canvas.py} +8 -4
  1021. scitex/vis/io/{data.py → _data.py} +13 -9
  1022. scitex/vis/io/{directory.py → _directory.py} +7 -4
  1023. scitex/vis/io/{export.py → _export.py} +15 -12
  1024. scitex/vis/io/{load.py → _load.py} +1 -1
  1025. scitex/vis/io/{panel.py → _panel.py} +21 -13
  1026. scitex/vis/io/{save.py → _save.py} +0 -0
  1027. scitex/vis/model/__init__.py +7 -7
  1028. scitex/vis/model/{annotations.py → _annotations.py} +2 -4
  1029. scitex/vis/model/{axes.py → _axes.py} +1 -1
  1030. scitex/vis/model/{figure.py → _figure.py} +0 -0
  1031. scitex/vis/model/{guides.py → _guides.py} +1 -1
  1032. scitex/vis/model/{plot.py → _plot.py} +2 -4
  1033. scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
  1034. scitex/vis/model/{styles.py → _styles.py} +0 -0
  1035. scitex/vis/utils/__init__.py +2 -2
  1036. scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
  1037. scitex/vis/utils/{validate.py → _validate.py} +3 -9
  1038. scitex/web/__init__.py +7 -1
  1039. scitex/web/_scraping.py +54 -38
  1040. scitex/web/_search_pubmed.py +30 -14
  1041. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1042. scitex/writer/.legacy/_compile.py +18 -28
  1043. scitex/writer/Writer.py +8 -21
  1044. scitex/writer/__init__.py +11 -11
  1045. scitex/writer/_clone_writer_project.py +2 -6
  1046. scitex/writer/_compile/__init__.py +1 -0
  1047. scitex/writer/_compile/_parser.py +1 -0
  1048. scitex/writer/_compile/_runner.py +35 -38
  1049. scitex/writer/_compile/_validator.py +1 -0
  1050. scitex/writer/_compile/manuscript.py +1 -0
  1051. scitex/writer/_compile/revision.py +1 -0
  1052. scitex/writer/_compile/supplementary.py +1 -0
  1053. scitex/writer/_compile_async.py +5 -12
  1054. scitex/writer/_project/__init__.py +1 -0
  1055. scitex/writer/_project/_create.py +10 -25
  1056. scitex/writer/_project/_trees.py +4 -9
  1057. scitex/writer/_project/_validate.py +2 -3
  1058. scitex/writer/_validate_tree_structures.py +7 -18
  1059. scitex/writer/dataclasses/__init__.py +8 -10
  1060. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1061. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1062. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1063. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1064. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1065. scitex/writer/dataclasses/core/_Document.py +2 -3
  1066. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1067. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1068. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1069. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1070. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1071. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1072. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1073. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1074. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1075. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1076. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1077. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1078. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1079. scitex/writer/utils/_parse_script_args.py +20 -23
  1080. scitex/writer/utils/_watch.py +5 -5
  1081. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
  1082. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
  1083. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1084. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1085. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1086. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1087. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1088. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1089. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
  1090. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
  1091. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
@@ -33,18 +33,18 @@ class ChristianScienceMonitorTranslator:
33
33
  "inRepository": True,
34
34
  "translatorType": 4,
35
35
  "browserSupport": "gcsibv",
36
- "lastUpdated": "2016-11-01 18:26:01"
36
+ "lastUpdated": "2016-11-01 18:26:01",
37
37
  }
38
38
 
39
39
  def detect_web(self, doc: BeautifulSoup, url: str) -> str:
40
40
  """Detect if page is an article or search results."""
41
- if doc.select_one('h1#headline'):
42
- return 'magazineArticle'
41
+ if doc.select_one("h1#headline"):
42
+ return "magazineArticle"
43
43
 
44
- if '/content/search?' in url:
45
- return 'multiple'
44
+ if "/content/search?" in url:
45
+ return "multiple"
46
46
 
47
- return ''
47
+ return ""
48
48
 
49
49
  def do_web(self, doc: BeautifulSoup, url: str) -> Dict[str, Any]:
50
50
  """Extract article data."""
@@ -62,46 +62,44 @@ class ChristianScienceMonitorTranslator:
62
62
  Dictionary containing article metadata
63
63
  """
64
64
  item = {
65
- 'itemType': 'magazineArticle',
66
- 'creators': [],
67
- 'tags': [],
68
- 'attachments': [],
69
- 'url': url,
70
- 'ISSN': '0882-7729',
71
- 'publicationTitle': 'Christian Science Monitor'
65
+ "itemType": "magazineArticle",
66
+ "creators": [],
67
+ "tags": [],
68
+ "attachments": [],
69
+ "url": url,
70
+ "ISSN": "0882-7729",
71
+ "publicationTitle": "Christian Science Monitor",
72
72
  }
73
73
 
74
74
  # Title
75
- headline = doc.select_one('h1#headline')
75
+ headline = doc.select_one("h1#headline")
76
76
  if headline:
77
- item['title'] = headline.get_text().strip()
77
+ item["title"] = headline.get_text().strip()
78
78
 
79
79
  # Authors
80
- author_meta = doc.find('meta', attrs={'name': 'sailthru.author'})
81
- if author_meta and author_meta.get('content'):
82
- author_text = author_meta['content']
80
+ author_meta = doc.find("meta", attrs={"name": "sailthru.author"})
81
+ if author_meta and author_meta.get("content"):
82
+ author_text = author_meta["content"]
83
83
  # Handle multiple authors
84
- authors = [a.strip() for a in author_text.split(',')]
84
+ authors = [a.strip() for a in author_text.split(",")]
85
85
  for author in authors:
86
86
  if author:
87
- item['creators'].append(self._clean_author(author))
87
+ item["creators"].append(self._clean_author(author))
88
88
 
89
89
  # Date
90
- date_elem = doc.select_one('time#date-published')
91
- if date_elem and date_elem.get('datetime'):
92
- item['date'] = date_elem['datetime']
90
+ date_elem = doc.select_one("time#date-published")
91
+ if date_elem and date_elem.get("datetime"):
92
+ item["date"] = date_elem["datetime"]
93
93
 
94
94
  # Abstract
95
- summary = doc.select_one('h2#summary')
95
+ summary = doc.select_one("h2#summary")
96
96
  if summary:
97
- item['abstractNote'] = summary.get_text().strip()
97
+ item["abstractNote"] = summary.get_text().strip()
98
98
 
99
99
  # Snapshot attachment
100
- item['attachments'].append({
101
- 'title': 'CS Monitor Snapshot',
102
- 'mimeType': 'text/html',
103
- 'url': url
104
- })
100
+ item["attachments"].append(
101
+ {"title": "CS Monitor Snapshot", "mimeType": "text/html", "url": url}
102
+ )
105
103
 
106
104
  return item
107
105
 
@@ -112,13 +110,9 @@ class ChristianScienceMonitorTranslator:
112
110
 
113
111
  if len(parts) >= 2:
114
112
  return {
115
- 'firstName': ' '.join(parts[:-1]),
116
- 'lastName': parts[-1],
117
- 'creatorType': 'author'
113
+ "firstName": " ".join(parts[:-1]),
114
+ "lastName": parts[-1],
115
+ "creatorType": "author",
118
116
  }
119
117
  else:
120
- return {
121
- 'lastName': name,
122
- 'creatorType': 'author',
123
- 'fieldMode': True
124
- }
118
+ return {"lastName": name, "creatorType": "author", "fieldMode": True}
@@ -34,7 +34,7 @@ class ColumbiaUniversityPressTranslator:
34
34
  "inRepository": True,
35
35
  "translatorType": 4,
36
36
  "browserSupport": "gcsibv",
37
- "lastUpdated": "2016-09-10 11:35:07"
37
+ "lastUpdated": "2016-09-10 11:35:07",
38
38
  }
39
39
 
40
40
  def detect_web(self, doc: BeautifulSoup, url: str) -> str:
@@ -54,7 +54,9 @@ class ColumbiaUniversityPressTranslator:
54
54
  return "multiple"
55
55
  return ""
56
56
 
57
- def _get_search_results(self, doc: BeautifulSoup, check_only: bool = False) -> Dict[str, str]:
57
+ def _get_search_results(
58
+ self, doc: BeautifulSoup, check_only: bool = False
59
+ ) -> Dict[str, str]:
58
60
  """
59
61
  Get search results from the page.
60
62
 
@@ -67,10 +69,10 @@ class ColumbiaUniversityPressTranslator:
67
69
  """
68
70
  items = {}
69
71
  found = False
70
- rows = doc.select('div.search-list h2 > a')
72
+ rows = doc.select("div.search-list h2 > a")
71
73
 
72
74
  for row in rows:
73
- href = row.get('href')
75
+ href = row.get("href")
74
76
  title = row.get_text(strip=True)
75
77
  if not href or not title:
76
78
  continue
@@ -111,31 +113,33 @@ class ColumbiaUniversityPressTranslator:
111
113
  Dictionary containing book metadata
112
114
  """
113
115
  item = {
114
- 'itemType': 'book',
115
- 'creators': [],
116
- 'tags': [],
117
- 'attachments': [],
118
- 'notes': [],
119
- 'seeAlso': []
116
+ "itemType": "book",
117
+ "creators": [],
118
+ "tags": [],
119
+ "attachments": [],
120
+ "notes": [],
121
+ "seeAlso": [],
120
122
  }
121
123
 
122
124
  # Extract title
123
- title_elem = doc.select_one('div.book-header h1.title')
125
+ title_elem = doc.select_one("div.book-header h1.title")
124
126
  if title_elem:
125
- item['title'] = title_elem.get_text(strip=True)
127
+ item["title"] = title_elem.get_text(strip=True)
126
128
 
127
129
  # Extract book details
128
- book_details = doc.select('div.book-header.pc-only p[class], div.book-details p[class]')
130
+ book_details = doc.select(
131
+ "div.book-header.pc-only p[class], div.book-details p[class]"
132
+ )
129
133
 
130
134
  for detail in book_details:
131
- class_name = ' '.join(detail.get('class', []))
135
+ class_name = " ".join(detail.get("class", []))
132
136
  content = detail.get_text(strip=True)
133
137
 
134
- if class_name == 'subtitle':
135
- if 'title' in item:
136
- item['title'] = f"{item['title']}: {content}"
138
+ if class_name == "subtitle":
139
+ if "title" in item:
140
+ item["title"] = f"{item['title']}: {content}"
137
141
 
138
- elif class_name == 'author':
142
+ elif class_name == "author":
139
143
  # Parse creators (authors, editors, translators)
140
144
  creator_string = content
141
145
 
@@ -149,54 +153,58 @@ class ColumbiaUniversityPressTranslator:
149
153
  pos_translators = len(creator_string)
150
154
 
151
155
  # Extract authors
152
- authors_str = creator_string[:min(pos_editors, pos_translators)]
153
- authors = re.split(r'\band\b|,', authors_str)
156
+ authors_str = creator_string[: min(pos_editors, pos_translators)]
157
+ authors = re.split(r"\band\b|,", authors_str)
154
158
  for author in authors:
155
159
  author = author.strip()
156
160
  if author:
157
- item['creators'].append(self._clean_author(author, "author"))
161
+ item["creators"].append(self._clean_author(author, "author"))
158
162
 
159
163
  # Extract editors
160
164
  if pos_editors < len(creator_string):
161
165
  editors_str = creator_string[pos_editors:pos_translators]
162
- editors_str = re.sub(r'Edited\s*(by)?', '', editors_str)
163
- editors = re.split(r'\band\b|,', editors_str)
166
+ editors_str = re.sub(r"Edited\s*(by)?", "", editors_str)
167
+ editors = re.split(r"\band\b|,", editors_str)
164
168
  for editor in editors:
165
169
  editor = editor.strip()
166
170
  if editor:
167
- item['creators'].append(self._clean_author(editor, "editor"))
171
+ item["creators"].append(
172
+ self._clean_author(editor, "editor")
173
+ )
168
174
 
169
175
  # Extract translators
170
176
  if pos_translators < len(creator_string):
171
177
  translators_str = creator_string[pos_translators:]
172
- translators_str = re.sub(r'Translated\s*(by)?', '', translators_str)
173
- translators = re.split(r'\band\b|,', translators_str)
178
+ translators_str = re.sub(r"Translated\s*(by)?", "", translators_str)
179
+ translators = re.split(r"\band\b|,", translators_str)
174
180
  for translator in translators:
175
181
  translator = translator.strip()
176
182
  if translator:
177
- item['creators'].append(self._clean_author(translator, "translator"))
183
+ item["creators"].append(
184
+ self._clean_author(translator, "translator")
185
+ )
178
186
 
179
- elif class_name == 'pubdate':
187
+ elif class_name == "pubdate":
180
188
  # Convert date to ISO format
181
- item['date'] = content
189
+ item["date"] = content
182
190
 
183
- elif class_name == 'publisher':
184
- item['publisher'] = content
191
+ elif class_name == "publisher":
192
+ item["publisher"] = content
185
193
 
186
- elif class_name == 'isbn':
187
- item['ISBN'] = content
194
+ elif class_name == "isbn":
195
+ item["ISBN"] = content
188
196
 
189
- elif class_name == 'pages':
190
- item['pages'] = content
197
+ elif class_name == "pages":
198
+ item["pages"] = content
191
199
 
192
200
  # If there is no publisher field, assume it's published by CUP
193
- if 'publisher' not in item:
194
- item['publisher'] = "Columbia University Press"
201
+ if "publisher" not in item:
202
+ item["publisher"] = "Columbia University Press"
195
203
 
196
204
  # Extract abstract
197
- abstract_elem = doc.select_one('div.sp__the-description')
205
+ abstract_elem = doc.select_one("div.sp__the-description")
198
206
  if abstract_elem:
199
- item['abstractNote'] = abstract_elem.get_text(strip=True)
207
+ item["abstractNote"] = abstract_elem.get_text(strip=True)
200
208
 
201
209
  return item
202
210
 
@@ -216,13 +224,9 @@ class ColumbiaUniversityPressTranslator:
216
224
 
217
225
  if len(parts) >= 2:
218
226
  return {
219
- 'firstName': ' '.join(parts[:-1]),
220
- 'lastName': parts[-1],
221
- 'creatorType': creator_type
227
+ "firstName": " ".join(parts[:-1]),
228
+ "lastName": parts[-1],
229
+ "creatorType": creator_type,
222
230
  }
223
231
  else:
224
- return {
225
- 'lastName': name,
226
- 'creatorType': creator_type,
227
- 'fieldMode': True
228
- }
232
+ return {"lastName": name, "creatorType": creator_type, "fieldMode": True}
@@ -34,7 +34,7 @@ class CommonPlaceTranslator:
34
34
  "inRepository": True,
35
35
  "translatorType": 4,
36
36
  "browserSupport": "gcsibv",
37
- "lastUpdated": "2016-09-10 09:34:34"
37
+ "lastUpdated": "2016-09-10 09:34:34",
38
38
  }
39
39
 
40
40
  def detect_web(self, doc: BeautifulSoup, url: str) -> str:
@@ -50,11 +50,16 @@ class CommonPlaceTranslator:
50
50
  """
51
51
  if self._get_search_results(doc, True):
52
52
  return "multiple"
53
- elif "single-article" in doc.body.get('class', []) or "common-place-archives.org" in url:
53
+ elif (
54
+ "single-article" in doc.body.get("class", [])
55
+ or "common-place-archives.org" in url
56
+ ):
54
57
  return "journalArticle"
55
58
  return ""
56
59
 
57
- def _get_search_results(self, doc: BeautifulSoup, check_only: bool = False) -> Dict[str, str]:
60
+ def _get_search_results(
61
+ self, doc: BeautifulSoup, check_only: bool = False
62
+ ) -> Dict[str, str]:
58
63
  """
59
64
  Get search results from the page.
60
65
 
@@ -67,10 +72,10 @@ class CommonPlaceTranslator:
67
72
  """
68
73
  items = {}
69
74
  found = False
70
- rows = doc.select('h3.article-title > a, h2 > a')
75
+ rows = doc.select("h3.article-title > a, h2 > a")
71
76
 
72
77
  for row in rows:
73
- href = row.get('href')
78
+ href = row.get("href")
74
79
  title = row.get_text(strip=True)
75
80
  if not href or not title:
76
81
  continue
@@ -109,46 +114,46 @@ class CommonPlaceTranslator:
109
114
  Dictionary containing article metadata
110
115
  """
111
116
  item = {
112
- 'itemType': 'journalArticle',
113
- 'publicationTitle': 'Common-Place',
114
- 'url': url,
115
- 'creators': [],
116
- 'tags': [],
117
- 'attachments': [],
118
- 'notes': [],
119
- 'seeAlso': []
117
+ "itemType": "journalArticle",
118
+ "publicationTitle": "Common-Place",
119
+ "url": url,
120
+ "creators": [],
121
+ "tags": [],
122
+ "attachments": [],
123
+ "notes": [],
124
+ "seeAlso": [],
120
125
  }
121
126
 
122
- if "single-article" in doc.body.get('class', []):
127
+ if "single-article" in doc.body.get("class", []):
123
128
  # New format
124
- title_elem = doc.select_one('article h1')
129
+ title_elem = doc.select_one("article h1")
125
130
  if title_elem:
126
- item['title'] = title_elem.get_text(strip=True)
131
+ item["title"] = title_elem.get_text(strip=True)
127
132
 
128
- author_elem = doc.select_one('article h1 + p')
133
+ author_elem = doc.select_one("article h1 + p")
129
134
  if author_elem:
130
135
  author = author_elem.get_text(strip=True)
131
- item['creators'].append(self._clean_author(author, "author"))
136
+ item["creators"].append(self._clean_author(author, "author"))
132
137
 
133
- abstract_elem = doc.select_one('article div.entry-excerpt')
138
+ abstract_elem = doc.select_one("article div.entry-excerpt")
134
139
  if abstract_elem:
135
- item['abstractNote'] = abstract_elem.get_text(strip=True)
140
+ item["abstractNote"] = abstract_elem.get_text(strip=True)
136
141
 
137
142
  # Extract date from breadcrumb
138
- date_elem = doc.select_one('article ol.breadcrumb li')
143
+ date_elem = doc.select_one("article ol.breadcrumb li")
139
144
  if date_elem:
140
145
  # Get text nodes only
141
- date_text = ''.join([t for t in date_elem.stripped_strings if t])
142
- item['date'] = date_text
146
+ date_text = "".join([t for t in date_elem.stripped_strings if t])
147
+ item["date"] = date_text
143
148
 
144
149
  # Extract volume and issue
145
- volno_elem = doc.select_one('article ol.breadcrumb li:first-child a')
150
+ volno_elem = doc.select_one("article ol.breadcrumb li:first-child a")
146
151
  if volno_elem:
147
152
  volno = volno_elem.get_text(strip=True)
148
- m = re.search(r'Vol\.\s*(\d+)\s+No\.\s*(\d+)', volno)
153
+ m = re.search(r"Vol\.\s*(\d+)\s+No\.\s*(\d+)", volno)
149
154
  if m:
150
- item['volume'] = m.group(1)
151
- item['issue'] = m.group(2)
155
+ item["volume"] = m.group(1)
156
+ item["issue"] = m.group(2)
152
157
 
153
158
  else:
154
159
  # Old format
@@ -157,16 +162,16 @@ class CommonPlaceTranslator:
157
162
  date_re = r'<a href="/vol-(\d+)/no-(\d+)/">([^<]*)</a>'
158
163
  m = re.search(date_re, body_html)
159
164
  if m:
160
- item['volume'] = m.group(1)
161
- item['issue'] = m.group(2)
165
+ item["volume"] = m.group(1)
166
+ item["issue"] = m.group(2)
162
167
  # Extract month and year from the third group
163
168
  issue_info = m.group(3)
164
- month_match = re.search(r'·\s*([\w\s]+)$', issue_info)
169
+ month_match = re.search(r"·\s*([\w\s]+)$", issue_info)
165
170
  if month_match:
166
- item['date'] = month_match.group(1)
171
+ item["date"] = month_match.group(1)
167
172
 
168
- author = doc.select_one('div#content p span:nth-of-type(1)')
169
- title = doc.select_one('div#content p span:nth-of-type(2)')
173
+ author = doc.select_one("div#content p span:nth-of-type(1)")
174
+ title = doc.select_one("div#content p span:nth-of-type(2)")
170
175
 
171
176
  if author and title:
172
177
  author_text = author.get_text(strip=True)
@@ -177,34 +182,42 @@ class CommonPlaceTranslator:
177
182
  title_text = "Review of " + title_text
178
183
  author_text = author_text.replace("Review by", "").strip()
179
184
 
180
- item['creators'].append(self._clean_author(author_text, "author"))
181
- item['title'] = title_text
185
+ item["creators"].append(self._clean_author(author_text, "author"))
186
+ item["title"] = title_text
182
187
  else:
183
188
  # Older issue format
184
- review_elem = doc.select_one('body > table tr > td:nth-child(2) > p:nth-child(2)')
189
+ review_elem = doc.select_one(
190
+ "body > table tr > td:nth-child(2) > p:nth-child(2)"
191
+ )
185
192
  if review_elem and "Review" in review_elem.get_text():
186
- title_elem = doc.select_one('body > table tr > td:nth-child(2) > p i')
193
+ title_elem = doc.select_one(
194
+ "body > table tr > td:nth-child(2) > p i"
195
+ )
187
196
  if title_elem:
188
- item['title'] = "Review of " + title_elem.get_text(strip=True)
189
- author_text = review_elem.get_text()[10:].strip() # Skip "Review by "
197
+ item["title"] = "Review of " + title_elem.get_text(strip=True)
198
+ author_text = review_elem.get_text()[
199
+ 10:
200
+ ].strip() # Skip "Review by "
190
201
  else:
191
- title_elem = doc.select_one('body > table tr > td:nth-child(2) > p b')
202
+ title_elem = doc.select_one(
203
+ "body > table tr > td:nth-child(2) > p b"
204
+ )
192
205
  if title_elem:
193
- item['title'] = title_elem.get_text(strip=True)
194
- author_elem = doc.select_one('body > table tr > td:nth-child(2) > p:first-child')
206
+ item["title"] = title_elem.get_text(strip=True)
207
+ author_elem = doc.select_one(
208
+ "body > table tr > td:nth-child(2) > p:first-child"
209
+ )
195
210
  if author_elem:
196
- lines = author_elem.get_text().split('\n')
211
+ lines = author_elem.get_text().split("\n")
197
212
  author_text = lines[1].strip() if len(lines) > 1 else ""
198
213
 
199
214
  if author_text:
200
- item['creators'].append(self._clean_author(author_text, "author"))
215
+ item["creators"].append(self._clean_author(author_text, "author"))
201
216
 
202
217
  # Add snapshot attachment
203
- item['attachments'].append({
204
- 'title': 'Snapshot',
205
- 'mimeType': 'text/html',
206
- 'url': url
207
- })
218
+ item["attachments"].append(
219
+ {"title": "Snapshot", "mimeType": "text/html", "url": url}
220
+ )
208
221
 
209
222
  return item
210
223
 
@@ -224,13 +237,9 @@ class CommonPlaceTranslator:
224
237
 
225
238
  if len(parts) >= 2:
226
239
  return {
227
- 'firstName': ' '.join(parts[:-1]),
228
- 'lastName': parts[-1],
229
- 'creatorType': creator_type
240
+ "firstName": " ".join(parts[:-1]),
241
+ "lastName": parts[-1],
242
+ "creatorType": creator_type,
230
243
  }
231
244
  else:
232
- return {
233
- 'lastName': name,
234
- 'creatorType': creator_type,
235
- 'fieldMode': True
236
- }
245
+ return {"lastName": name, "creatorType": creator_type, "fieldMode": True}