scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +19 -8
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +2 -1
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +6 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +6 -12
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +4 -9
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +5 -1
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
- scitex/io/_load_modules/_pdf.py +38 -29
- scitex/io/_load_modules/_sqlite3.py +1 -0
- scitex/io/_load_modules/_txt.py +2 -0
- scitex/io/_load_modules/_xml.py +9 -9
- scitex/io/_load_modules/_zarr.py +12 -10
- scitex/io/_metadata.py +76 -37
- scitex/io/_qr_utils.py +18 -13
- scitex/io/_save.py +220 -63
- scitex/io/_save_modules/__init__.py +7 -2
- scitex/io/_save_modules/_bibtex.py +66 -61
- scitex/io/_save_modules/_canvas.py +5 -6
- scitex/io/_save_modules/_catboost.py +2 -2
- scitex/io/_save_modules/_csv.py +4 -4
- scitex/io/_save_modules/_excel.py +5 -9
- scitex/io/_save_modules/_hdf5.py +9 -21
- scitex/io/_save_modules/_html.py +5 -5
- scitex/io/_save_modules/_image.py +105 -8
- scitex/io/_save_modules/_joblib.py +2 -2
- scitex/io/_save_modules/_json.py +51 -6
- scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
- scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
- scitex/io/_save_modules/_matlab.py +2 -2
- scitex/io/_save_modules/_numpy.py +6 -8
- scitex/io/_save_modules/_pickle.py +4 -4
- scitex/io/_save_modules/_plotly.py +3 -3
- scitex/io/_save_modules/_tex.py +23 -25
- scitex/io/_save_modules/_text.py +2 -2
- scitex/io/_save_modules/_yaml.py +9 -9
- scitex/io/_save_modules/_zarr.py +15 -15
- scitex/io/utils/__init__.py +2 -1
- scitex/io/utils/h5_to_zarr.py +173 -155
- scitex/linalg/__init__.py +1 -1
- scitex/linalg/_geometric_median.py +4 -3
- scitex/logging/_Tee.py +5 -7
- scitex/logging/__init__.py +18 -19
- scitex/logging/_config.py +4 -1
- scitex/logging/_context.py +6 -5
- scitex/logging/_formatters.py +2 -3
- scitex/logging/_handlers.py +19 -20
- scitex/logging/_levels.py +9 -17
- scitex/logging/_logger.py +74 -15
- scitex/logging/_print_capture.py +17 -17
- scitex/nn/_BNet.py +1 -3
- scitex/nn/_Filters.py +6 -2
- scitex/nn/_ModulationIndex.py +3 -1
- scitex/nn/_PAC.py +3 -2
- scitex/nn/_PSD.py +0 -1
- scitex/nn/__init__.py +16 -3
- scitex/path/_clean.py +10 -8
- scitex/path/_find.py +1 -1
- scitex/path/_get_spath.py +1 -2
- scitex/path/_mk_spath.py +1 -1
- scitex/path/_symlink.py +5 -10
- scitex/pd/__init__.py +4 -1
- scitex/pd/_force_df.py +24 -24
- scitex/pd/_get_unique.py +1 -0
- scitex/pd/_merge_columns.py +1 -1
- scitex/pd/_round.py +11 -7
- scitex/pd/_to_xy.py +0 -1
- scitex/plt/REQUESTS.md +191 -0
- scitex/plt/__init__.py +185 -87
- scitex/plt/_subplots/_AxesWrapper.py +22 -6
- scitex/plt/_subplots/_AxisWrapper.py +100 -39
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
- scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
- scitex/plt/_subplots/_FigWrapper.py +93 -60
- scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
- scitex/plt/_subplots/__init__.py +10 -0
- scitex/plt/_subplots/_export_as_csv.py +89 -47
- scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
- scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
- scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_fillv.py +35 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_heatmap.py +18 -18
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_image.py +24 -18
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_joyplot.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_line.py +34 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_mean_ci.py +15 -13
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_mean_std.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_median_iqr.py +15 -13
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_raster.py +11 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_rectangle.py +84 -56
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_scatter_hist.py +35 -32
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_shaded_line.py +46 -30
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_violin.py +51 -51
- scitex/plt/_subplots/_export_as_csv_formatters/_format_text.py +32 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_violin.py +34 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_violinplot.py +44 -37
- scitex/plt/_subplots/_export_as_csv_formatters/verify_formatters.py +91 -74
- scitex/plt/_tpl.py +6 -5
- scitex/plt/ax/_plot/__init__.py +24 -0
- scitex/plt/ax/_plot/_add_fitted_line.py +12 -11
- scitex/plt/ax/_plot/_plot_circular_hist.py +3 -1
- scitex/plt/ax/_plot/_plot_statistical_shaded_line.py +25 -19
- scitex/plt/ax/_plot/_stx_conf_mat.py +6 -3
- scitex/plt/ax/_plot/_stx_ecdf.py +5 -3
- scitex/plt/ax/_plot/_stx_fillv.py +4 -2
- scitex/plt/ax/_plot/_stx_heatmap.py +7 -4
- scitex/plt/ax/_plot/_stx_image.py +7 -5
- scitex/plt/ax/_plot/_stx_joyplot.py +32 -10
- scitex/plt/ax/_plot/_stx_raster.py +26 -11
- scitex/plt/ax/_plot/_stx_rectangle.py +2 -2
- scitex/plt/ax/_plot/_stx_shaded_line.py +15 -11
- scitex/plt/ax/_plot/_stx_violin.py +3 -1
- scitex/plt/ax/_style/_add_marginal_ax.py +6 -4
- scitex/plt/ax/_style/_auto_scale_axis.py +14 -10
- scitex/plt/ax/_style/_extend.py +3 -1
- scitex/plt/ax/_style/_force_aspect.py +5 -3
- scitex/plt/ax/_style/_format_units.py +2 -2
- scitex/plt/ax/_style/_hide_spines.py +5 -1
- scitex/plt/ax/_style/_map_ticks.py +5 -3
- scitex/plt/ax/_style/_rotate_labels.py +5 -4
- scitex/plt/ax/_style/_rotate_labels_v01.py +73 -63
- scitex/plt/ax/_style/_set_log_scale.py +120 -85
- scitex/plt/ax/_style/_set_meta.py +99 -76
- scitex/plt/ax/_style/_set_supxyt.py +33 -16
- scitex/plt/ax/_style/_set_xyt.py +27 -18
- scitex/plt/ax/_style/_share_axes.py +15 -5
- scitex/plt/ax/_style/_show_spines.py +58 -57
- scitex/plt/ax/_style/_style_barplot.py +1 -1
- scitex/plt/ax/_style/_style_boxplot.py +25 -14
- scitex/plt/ax/_style/_style_errorbar.py +0 -0
- scitex/plt/ax/_style/_style_scatter.py +1 -1
- scitex/plt/ax/_style/_style_suptitles.py +3 -3
- scitex/plt/ax/_style/_style_violinplot.py +8 -2
- scitex/plt/color/__init__.py +34 -2
- scitex/plt/color/_add_hue_col.py +1 -0
- scitex/plt/color/_colors.py +0 -1
- scitex/plt/color/_get_colors_from_conf_matap.py +3 -1
- scitex/plt/color/_vizualize_colors.py +0 -1
- scitex/plt/docs/FIGURE_ARCHITECTURE.md +155 -97
- scitex/plt/gallery/README.md +75 -0
- scitex/plt/gallery/__init__.py +29 -0
- scitex/plt/gallery/_generate.py +153 -0
- scitex/plt/gallery/_plots.py +594 -0
- scitex/plt/gallery/_registry.py +153 -0
- scitex/plt/styles/__init__.py +9 -9
- scitex/plt/styles/_plot_defaults.py +62 -61
- scitex/plt/styles/_plot_postprocess.py +126 -77
- scitex/plt/styles/_style_loader.py +0 -0
- scitex/plt/styles/presets.py +43 -18
- scitex/plt/templates/research-master/scitex/vis/gallery/area/fill_between.json +110 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/area/fill_betweenx.json +88 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/area/stx_fill_between.json +103 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/area/stx_fillv.json +106 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/bar.json +92 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/barh.json +92 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/boxplot.json +92 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_bar.json +84 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_barh.json +84 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_box.json +83 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_boxplot.json +93 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_violin.json +91 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/stx_violinplot.json +91 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/categorical/violinplot.json +91 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/contour/contour.json +97 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/contour/contourf.json +98 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/contour/stx_contour.json +84 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/distribution/hist.json +101 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/distribution/hist2d.json +96 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/distribution/stx_ecdf.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/distribution/stx_joyplot.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/distribution/stx_kde.json +93 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/grid/imshow.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/grid/matshow.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_conf_mat.json +83 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_heatmap.json +92 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_image.json +121 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/grid/stx_imshow.json +84 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/line/plot.json +110 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/line/step.json +92 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/line/stx_line.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/line/stx_shaded_line.json +96 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/scatter/hexbin.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/scatter/scatter.json +95 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/scatter/stem.json +92 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/scatter/stx_scatter.json +84 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/special/pie.json +94 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/special/stx_raster.json +109 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/special/stx_rectangle.json +108 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/statistical/errorbar.json +93 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_errorbar.json +84 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_mean_ci.json +96 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_mean_std.json +96 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/statistical/stx_median_iqr.json +96 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/vector/quiver.json +99 -0
- scitex/plt/templates/research-master/scitex/vis/gallery/vector/streamplot.json +100 -0
- scitex/plt/utils/__init__.py +29 -2
- scitex/plt/utils/_close.py +8 -3
- scitex/plt/utils/_collect_figure_metadata.py +3031 -265
- scitex/plt/utils/_colorbar.py +15 -17
- scitex/plt/utils/_configure_mpl.py +22 -14
- scitex/plt/utils/_crop.py +60 -27
- scitex/plt/utils/_csv_column_naming.py +123 -72
- scitex/plt/utils/_dimension_viewer.py +7 -19
- scitex/plt/utils/_figure_from_axes_mm.py +70 -16
- scitex/plt/utils/_figure_mm.py +3 -2
- scitex/plt/utils/_get_actual_font.py +5 -4
- scitex/plt/utils/_histogram_utils.py +52 -48
- scitex/plt/utils/_is_valid_axis.py +19 -13
- scitex/plt/utils/_mk_colorbar.py +3 -3
- scitex/plt/utils/_scientific_captions.py +202 -139
- scitex/plt/utils/_scitex_config.py +98 -98
- scitex/plt/utils/_units.py +0 -0
- scitex/plt/utils/metadata/__init__.py +36 -0
- scitex/plt/utils/metadata/_artist_extraction.py +119 -0
- scitex/plt/utils/metadata/_axes_metadata.py +93 -0
- scitex/plt/utils/metadata/_collection_artists.py +292 -0
- scitex/plt/utils/metadata/_core.py +208 -0
- scitex/plt/utils/metadata/_csv_column_extraction.py +186 -0
- scitex/plt/utils/metadata/_csv_hash.py +115 -0
- scitex/plt/utils/metadata/_csv_verification.py +95 -0
- scitex/plt/utils/metadata/_data_linkage.py +263 -0
- scitex/plt/utils/metadata/_dimensions.py +239 -0
- scitex/plt/utils/metadata/_figure_metadata.py +58 -0
- scitex/plt/utils/metadata/_image_text_artists.py +168 -0
- scitex/plt/utils/metadata/_label_parsing.py +82 -0
- scitex/plt/utils/metadata/_legend_extraction.py +120 -0
- scitex/plt/utils/metadata/_line_artists.py +367 -0
- scitex/plt/utils/metadata/_line_semantic_handling.py +173 -0
- scitex/plt/utils/metadata/_patch_artists.py +211 -0
- scitex/plt/utils/metadata/_plot_content.py +26 -0
- scitex/plt/utils/metadata/_plot_type_detection.py +184 -0
- scitex/plt/utils/metadata/_precision.py +134 -0
- scitex/plt/utils/metadata/_precision_config.py +68 -0
- scitex/plt/utils/metadata/_precision_sections.py +211 -0
- scitex/plt/utils/metadata/_recipe_extraction.py +267 -0
- scitex/plt/utils/metadata/_style_parsing.py +174 -0
- scitex/repro/_RandomStateManager.py +33 -38
- scitex/repro/__init__.py +16 -7
- scitex/repro/_gen_ID.py +7 -9
- scitex/repro/_gen_timestamp.py +7 -6
- scitex/repro/_hash_array.py +8 -12
- scitex/reproduce/__init__.py +1 -1
- scitex/resource/_get_processor_usages.py +3 -1
- scitex/resource/_log_processor_usages.py +3 -1
- scitex/rng/__init__.py +1 -1
- scitex/schema/README.md +178 -0
- scitex/schema/__init__.py +144 -0
- scitex/schema/_canvas.py +444 -0
- scitex/schema/_stats.py +762 -0
- scitex/schema/_validation.py +590 -0
- scitex/scholar/.legacy/Scholar.py +5 -12
- scitex/scholar/.legacy/_Scholar.py +66 -99
- scitex/scholar/.legacy/_ScholarAPI.py +75 -66
- scitex/scholar/.legacy/_tmp/search_engine/_BaseSearchEngine.py +3 -3
- scitex/scholar/.legacy/_tmp/search_engine/_UnifiedSearcher.py +4 -9
- scitex/scholar/.legacy/_tmp/search_engine/__init__.py +14 -21
- scitex/scholar/.legacy/_tmp/search_engine/local/_LocalSearchEngine.py +40 -37
- scitex/scholar/.legacy/_tmp/search_engine/local/_VectorSearchEngine.py +31 -28
- scitex/scholar/.legacy/_tmp/search_engine/web/_ArxivSearchEngine.py +74 -65
- scitex/scholar/.legacy/_tmp/search_engine/web/_CrossRefSearchEngine.py +122 -116
- scitex/scholar/.legacy/_tmp/search_engine/web/_GoogleScholarSearchEngine.py +65 -59
- scitex/scholar/.legacy/_tmp/search_engine/web/_PubMedSearchEngine.py +121 -107
- scitex/scholar/.legacy/_tmp/search_engine/web/_SemanticScholarSearchEngine.py +5 -12
- scitex/scholar/.legacy/database/_DatabaseEntry.py +49 -45
- scitex/scholar/.legacy/database/_DatabaseIndex.py +131 -94
- scitex/scholar/.legacy/database/_LibraryManager.py +65 -63
- scitex/scholar/.legacy/database/_PaperDatabase.py +138 -124
- scitex/scholar/.legacy/database/_ScholarDatabaseIntegration.py +14 -36
- scitex/scholar/.legacy/database/_StorageIntegratedDB.py +192 -156
- scitex/scholar/.legacy/database/_ZoteroCompatibleDB.py +300 -237
- scitex/scholar/.legacy/database/__init__.py +2 -1
- scitex/scholar/.legacy/database/manage.py +92 -84
- scitex/scholar/.legacy/lookup/_LookupIndex.py +157 -101
- scitex/scholar/.legacy/lookup/__init__.py +2 -1
- scitex/scholar/.legacy/metadata/doi/batch/_MetadataHandlerForBatchDOIResolution.py +4 -9
- scitex/scholar/.legacy/metadata/doi/batch/_ProgressManagerForBatchDOIResolution.py +10 -23
- scitex/scholar/.legacy/metadata/doi/batch/_SourceStatsManagerForBatchDOIResolution.py +4 -9
- scitex/scholar/.legacy/metadata/doi/batch/__init__.py +3 -1
- scitex/scholar/.legacy/metadata/doi/resolvers/_BatchDOIResolver.py +10 -25
- scitex/scholar/.legacy/metadata/doi/resolvers/_BibTeXDOIResolver.py +19 -49
- scitex/scholar/.legacy/metadata/doi/resolvers/_DOIResolver.py +1 -0
- scitex/scholar/.legacy/metadata/doi/resolvers/_SingleDOIResolver.py +8 -20
- scitex/scholar/.legacy/metadata/doi/sources/.combined-SemanticScholarSource/_SemanticScholarSource.py +37 -35
- scitex/scholar/.legacy/metadata/doi/sources/.combined-SemanticScholarSource/_SemanticScholarSourceEnhanced.py +49 -37
- scitex/scholar/.legacy/metadata/doi/sources/_ArXivSource.py +11 -30
- scitex/scholar/.legacy/metadata/doi/sources/_BaseDOISource.py +19 -47
- scitex/scholar/.legacy/metadata/doi/sources/_CrossRefLocalSource.py +1 -0
- scitex/scholar/.legacy/metadata/doi/sources/_CrossRefSource.py +12 -33
- scitex/scholar/.legacy/metadata/doi/sources/_OpenAlexSource.py +8 -20
- scitex/scholar/.legacy/metadata/doi/sources/_PubMedSource.py +10 -27
- scitex/scholar/.legacy/metadata/doi/sources/_SemanticScholarSource.py +11 -29
- scitex/scholar/.legacy/metadata/doi/sources/_SourceManager.py +8 -21
- scitex/scholar/.legacy/metadata/doi/sources/_SourceResolutionStrategy.py +24 -55
- scitex/scholar/.legacy/metadata/doi/sources/_SourceRotationManager.py +8 -21
- scitex/scholar/.legacy/metadata/doi/sources/_URLDOISource.py +9 -16
- scitex/scholar/.legacy/metadata/doi/sources/_UnifiedSource.py +8 -22
- scitex/scholar/.legacy/metadata/doi/sources/__init__.py +1 -0
- scitex/scholar/.legacy/metadata/doi/utils/_PubMedConverter.py +4 -8
- scitex/scholar/.legacy/metadata/doi/utils/_RateLimitHandler.py +17 -43
- scitex/scholar/.legacy/metadata/doi/utils/_TextNormalizer.py +8 -18
- scitex/scholar/.legacy/metadata/doi/utils/_URLDOIExtractor.py +4 -8
- scitex/scholar/.legacy/metadata/doi/utils/__init__.py +1 -0
- scitex/scholar/.legacy/metadata/doi/utils/_to_complete_metadata_structure.py +1 -0
- scitex/scholar/.legacy/metadata/enrichment/_LibraryEnricher.py +2 -3
- scitex/scholar/.legacy/metadata/enrichment/enrichers/_ImpactFactorEnricher.py +6 -12
- scitex/scholar/.legacy/metadata/enrichment/enrichers/_SmartEnricher.py +5 -10
- scitex/scholar/.legacy/metadata/enrichment/sources/_UnifiedMetadataSource.py +4 -5
- scitex/scholar/.legacy/metadata/query_to_full_meta_json.py +8 -12
- scitex/scholar/.legacy/metadata/urls/_URLMetadataHandler.py +3 -3
- scitex/scholar/.legacy/metadata/urls/_ZoteroTranslatorRunner.py +15 -21
- scitex/scholar/.legacy/metadata/urls/__init__.py +3 -3
- scitex/scholar/.legacy/metadata/urls/_finder.py +4 -6
- scitex/scholar/.legacy/metadata/urls/_handler.py +7 -15
- scitex/scholar/.legacy/metadata/urls/_resolver.py +6 -12
- scitex/scholar/.legacy/search/_Embedder.py +74 -69
- scitex/scholar/.legacy/search/_SemanticSearch.py +91 -90
- scitex/scholar/.legacy/search/_SemanticSearchEngine.py +104 -109
- scitex/scholar/.legacy/search/_UnifiedSearcher.py +530 -471
- scitex/scholar/.legacy/search/_VectorDatabase.py +111 -92
- scitex/scholar/.legacy/search/__init__.py +1 -0
- scitex/scholar/.legacy/storage/_EnhancedStorageManager.py +182 -154
- scitex/scholar/.legacy/storage/__init__.py +2 -1
- scitex/scholar/__init__.py +0 -2
- scitex/scholar/__main__.py +1 -3
- scitex/scholar/auth/ScholarAuthManager.py +13 -36
- scitex/scholar/auth/core/AuthenticationGateway.py +15 -29
- scitex/scholar/auth/core/BrowserAuthenticator.py +22 -57
- scitex/scholar/auth/core/StrategyResolver.py +10 -27
- scitex/scholar/auth/core/__init__.py +5 -1
- scitex/scholar/auth/gateway/_OpenURLLinkFinder.py +11 -21
- scitex/scholar/auth/gateway/_OpenURLResolver.py +10 -18
- scitex/scholar/auth/gateway/_resolve_functions.py +3 -3
- scitex/scholar/auth/providers/BaseAuthenticator.py +1 -0
- scitex/scholar/auth/providers/EZProxyAuthenticator.py +7 -14
- scitex/scholar/auth/providers/OpenAthensAuthenticator.py +29 -57
- scitex/scholar/auth/providers/ShibbolethAuthenticator.py +87 -73
- scitex/scholar/auth/session/AuthCacheManager.py +12 -22
- scitex/scholar/auth/session/SessionManager.py +4 -6
- scitex/scholar/auth/sso/BaseSSOAutomator.py +13 -19
- scitex/scholar/auth/sso/OpenAthensSSOAutomator.py +16 -45
- scitex/scholar/auth/sso/SSOAutomator.py +8 -15
- scitex/scholar/auth/sso/UniversityOfMelbourneSSOAutomator.py +13 -23
- scitex/scholar/browser/ScholarBrowserManager.py +31 -56
- scitex/scholar/browser/__init__.py +1 -0
- scitex/scholar/browser/utils/click_and_wait.py +3 -4
- scitex/scholar/browser/utils/close_unwanted_pages.py +4 -7
- scitex/scholar/browser/utils/wait_redirects.py +15 -40
- scitex/scholar/citation_graph/__init__.py +0 -0
- scitex/scholar/citation_graph/builder.py +3 -7
- scitex/scholar/citation_graph/database.py +4 -11
- scitex/scholar/citation_graph/example.py +5 -10
- scitex/scholar/citation_graph/models.py +0 -0
- scitex/scholar/cli/_url_utils.py +1 -1
- scitex/scholar/cli/chrome.py +5 -3
- scitex/scholar/cli/download_pdf.py +13 -14
- scitex/scholar/cli/handlers/bibtex_handler.py +4 -12
- scitex/scholar/cli/handlers/doi_handler.py +1 -3
- scitex/scholar/cli/handlers/project_handler.py +6 -20
- scitex/scholar/cli/open_browser.py +41 -39
- scitex/scholar/cli/open_browser_auto.py +31 -39
- scitex/scholar/cli/open_browser_monitored.py +27 -24
- scitex/scholar/config/ScholarConfig.py +5 -8
- scitex/scholar/config/__init__.py +1 -0
- scitex/scholar/config/core/_CascadeConfig.py +3 -3
- scitex/scholar/config/core/_PathManager.py +16 -28
- scitex/scholar/core/Paper.py +79 -78
- scitex/scholar/core/Papers.py +16 -27
- scitex/scholar/core/Scholar.py +98 -229
- scitex/scholar/core/journal_normalizer.py +52 -49
- scitex/scholar/core/oa_cache.py +27 -23
- scitex/scholar/core/open_access.py +17 -8
- scitex/scholar/docs/template.py +4 -3
- scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/clf_svm.py +0 -0
- scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/download.py +0 -0
- scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_conf_mat.py +0 -0
- scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_digits.py +0 -0
- scitex/scholar/docs/to_claude/examples/example-python-project-scitex/scripts/mnist/plot_umap_space.py +0 -0
- scitex/scholar/examples/00_config.py +10 -9
- scitex/scholar/examples/01_auth.py +3 -0
- scitex/scholar/examples/02_browser.py +14 -10
- scitex/scholar/examples/03_01-engine.py +3 -0
- scitex/scholar/examples/03_02-engine-for-bibtex.py +4 -3
- scitex/scholar/examples/04_01-url.py +9 -9
- scitex/scholar/examples/04_02-url-for-bibtex.py +7 -3
- scitex/scholar/examples/04_02-url-for-dois.py +87 -97
- scitex/scholar/examples/05_download_pdf.py +10 -4
- scitex/scholar/examples/06_find_and_download.py +6 -6
- scitex/scholar/examples/06_parse_bibtex.py +17 -17
- scitex/scholar/examples/07_storage_integration.py +6 -9
- scitex/scholar/examples/99_fullpipeline-for-bibtex.py +14 -15
- scitex/scholar/examples/99_fullpipeline-for-one-entry.py +31 -23
- scitex/scholar/examples/99_maintenance.py +3 -0
- scitex/scholar/examples/dev.py +2 -3
- scitex/scholar/examples/zotero_integration.py +11 -18
- scitex/scholar/impact_factor/ImpactFactorEngine.py +7 -9
- scitex/scholar/impact_factor/estimation/__init__.py +4 -4
- scitex/scholar/impact_factor/estimation/core/__init__.py +3 -7
- scitex/scholar/impact_factor/estimation/core/cache_manager.py +223 -211
- scitex/scholar/impact_factor/estimation/core/calculator.py +165 -131
- scitex/scholar/impact_factor/estimation/core/journal_matcher.py +217 -172
- scitex/scholar/impact_factor/jcr/ImpactFactorJCREngine.py +6 -14
- scitex/scholar/impact_factor/jcr/build_database.py +4 -3
- scitex/scholar/integration/base.py +9 -17
- scitex/scholar/integration/mendeley/exporter.py +2 -4
- scitex/scholar/integration/mendeley/importer.py +3 -3
- scitex/scholar/integration/mendeley/linker.py +3 -3
- scitex/scholar/integration/mendeley/mapper.py +9 -6
- scitex/scholar/integration/zotero/__main__.py +26 -43
- scitex/scholar/integration/zotero/exporter.py +15 -11
- scitex/scholar/integration/zotero/importer.py +12 -10
- scitex/scholar/integration/zotero/linker.py +8 -12
- scitex/scholar/integration/zotero/mapper.py +17 -12
- scitex/scholar/metadata_engines/.combined-SemanticScholarSource/_SemanticScholarSource.py +37 -35
- scitex/scholar/metadata_engines/.combined-SemanticScholarSource/_SemanticScholarSourceEnhanced.py +47 -35
- scitex/scholar/metadata_engines/ScholarEngine.py +21 -43
- scitex/scholar/metadata_engines/__init__.py +1 -0
- scitex/scholar/metadata_engines/individual/ArXivEngine.py +15 -37
- scitex/scholar/metadata_engines/individual/CrossRefEngine.py +15 -42
- scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py +24 -45
- scitex/scholar/metadata_engines/individual/OpenAlexEngine.py +11 -21
- scitex/scholar/metadata_engines/individual/PubMedEngine.py +10 -27
- scitex/scholar/metadata_engines/individual/SemanticScholarEngine.py +28 -35
- scitex/scholar/metadata_engines/individual/URLDOIEngine.py +11 -22
- scitex/scholar/metadata_engines/individual/_BaseDOIEngine.py +20 -49
- scitex/scholar/metadata_engines/utils/_PubMedConverter.py +4 -8
- scitex/scholar/metadata_engines/utils/_URLDOIExtractor.py +5 -10
- scitex/scholar/metadata_engines/utils/__init__.py +2 -0
- scitex/scholar/metadata_engines/utils/_metadata2bibtex.py +3 -0
- scitex/scholar/metadata_engines/utils/_standardize_metadata.py +2 -3
- scitex/scholar/pdf_download/ScholarPDFDownloader.py +25 -37
- scitex/scholar/pdf_download/strategies/chrome_pdf_viewer.py +11 -19
- scitex/scholar/pdf_download/strategies/direct_download.py +5 -9
- scitex/scholar/pdf_download/strategies/manual_download_fallback.py +3 -3
- scitex/scholar/pdf_download/strategies/manual_download_utils.py +6 -13
- scitex/scholar/pdf_download/strategies/open_access_download.py +49 -31
- scitex/scholar/pdf_download/strategies/response_body.py +8 -19
- scitex/scholar/pipelines/ScholarPipelineBibTeX.py +9 -18
- scitex/scholar/pipelines/ScholarPipelineMetadataParallel.py +25 -26
- scitex/scholar/pipelines/ScholarPipelineMetadataSingle.py +62 -23
- scitex/scholar/pipelines/ScholarPipelineParallel.py +13 -30
- scitex/scholar/pipelines/ScholarPipelineSearchParallel.py +299 -220
- scitex/scholar/pipelines/ScholarPipelineSearchSingle.py +202 -165
- scitex/scholar/pipelines/ScholarPipelineSingle.py +25 -51
- scitex/scholar/pipelines/SearchQueryParser.py +55 -55
- scitex/scholar/search_engines/ScholarSearchEngine.py +31 -27
- scitex/scholar/search_engines/_BaseSearchEngine.py +20 -23
- scitex/scholar/search_engines/individual/ArXivSearchEngine.py +53 -35
- scitex/scholar/search_engines/individual/CrossRefSearchEngine.py +47 -40
- scitex/scholar/search_engines/individual/OpenAlexSearchEngine.py +55 -50
- scitex/scholar/search_engines/individual/PubMedSearchEngine.py +8 -10
- scitex/scholar/search_engines/individual/SemanticScholarSearchEngine.py +55 -49
- scitex/scholar/storage/BibTeXHandler.py +150 -95
- scitex/scholar/storage/PaperIO.py +3 -6
- scitex/scholar/storage/ScholarLibrary.py +70 -49
- scitex/scholar/storage/_DeduplicationManager.py +52 -25
- scitex/scholar/storage/_LibraryCacheManager.py +19 -46
- scitex/scholar/storage/_LibraryManager.py +65 -175
- scitex/scholar/url_finder/ScholarURLFinder.py +9 -25
- scitex/scholar/url_finder/strategies/find_pdf_urls_by_direct_links.py +1 -1
- scitex/scholar/url_finder/strategies/find_pdf_urls_by_href.py +6 -10
- scitex/scholar/url_finder/strategies/find_pdf_urls_by_navigation.py +4 -6
- scitex/scholar/url_finder/strategies/find_pdf_urls_by_publisher_patterns.py +8 -15
- scitex/scholar/url_finder/strategies/find_pdf_urls_by_zotero_translators.py +3 -3
- scitex/scholar/url_finder/strategies/find_supplementary_urls_by_href.py +3 -3
- scitex/scholar/url_finder/translators/core/patterns.py +6 -4
- scitex/scholar/url_finder/translators/core/registry.py +6 -9
- scitex/scholar/url_finder/translators/individual/BOFiP_Impots.py +60 -52
- scitex/scholar/url_finder/translators/individual/Baidu_Scholar.py +54 -62
- scitex/scholar/url_finder/translators/individual/Bangkok_Post.py +38 -44
- scitex/scholar/url_finder/translators/individual/Baruch_Foundation.py +43 -47
- scitex/scholar/url_finder/translators/individual/Beobachter.py +46 -50
- scitex/scholar/url_finder/translators/individual/Bezneng_Gajit.py +37 -41
- scitex/scholar/url_finder/translators/individual/BibLaTeX.py +59 -52
- scitex/scholar/url_finder/translators/individual/BibTeX.py +83 -79
- scitex/scholar/url_finder/translators/individual/Biblio_com.py +48 -51
- scitex/scholar/url_finder/translators/individual/Bibliontology_RDF.py +58 -56
- scitex/scholar/url_finder/translators/individual/Camara_Brasileira_do_Livro_ISBN.py +102 -99
- scitex/scholar/url_finder/translators/individual/CanLII.py +49 -43
- scitex/scholar/url_finder/translators/individual/Canada_com.py +36 -40
- scitex/scholar/url_finder/translators/individual/Canadian_Letters_and_Images.py +43 -43
- scitex/scholar/url_finder/translators/individual/Canadiana_ca.py +77 -66
- scitex/scholar/url_finder/translators/individual/Cascadilla_Proceedings_Project.py +68 -62
- scitex/scholar/url_finder/translators/individual/Central_and_Eastern_European_Online_Library_Journals.py +60 -60
- scitex/scholar/url_finder/translators/individual/Champlain_Society_Collection.py +63 -61
- scitex/scholar/url_finder/translators/individual/Chicago_Journal_of_Theoretical_Computer_Science.py +74 -58
- scitex/scholar/url_finder/translators/individual/Christian_Science_Monitor.py +32 -38
- scitex/scholar/url_finder/translators/individual/Columbia_University_Press.py +51 -47
- scitex/scholar/url_finder/translators/individual/Common_Place.py +66 -57
- scitex/scholar/url_finder/translators/individual/Cornell_LII.py +66 -62
- scitex/scholar/url_finder/translators/individual/Cornell_University_Press.py +38 -45
- scitex/scholar/url_finder/translators/individual/CourtListener.py +52 -56
- scitex/scholar/url_finder/translators/individual/DAI_Zenon.py +53 -54
- scitex/scholar/url_finder/translators/individual/access_medicine.py +27 -33
- scitex/scholar/url_finder/translators/individual/acm.py +1 -1
- scitex/scholar/url_finder/translators/individual/acm_digital_library.py +93 -63
- scitex/scholar/url_finder/translators/individual/airiti.py +3 -1
- scitex/scholar/url_finder/translators/individual/aosic.py +3 -1
- scitex/scholar/url_finder/translators/individual/archive_ouverte_aosic.py +3 -1
- scitex/scholar/url_finder/translators/individual/archive_ouverte_en_sciences_de_l_information_et_de_la_communication___aosic_.py +6 -2
- scitex/scholar/url_finder/translators/individual/artforum.py +35 -27
- scitex/scholar/url_finder/translators/individual/arxiv.py +1 -1
- scitex/scholar/url_finder/translators/individual/arxiv_org.py +8 -4
- scitex/scholar/url_finder/translators/individual/atlanta_journal_constitution.py +22 -18
- scitex/scholar/url_finder/translators/individual/atypon_journals.py +19 -11
- scitex/scholar/url_finder/translators/individual/austlii_and_nzlii.py +48 -44
- scitex/scholar/url_finder/translators/individual/australian_dictionary_of_biography.py +21 -17
- scitex/scholar/url_finder/translators/individual/bailii.py +22 -19
- scitex/scholar/url_finder/translators/individual/bbc.py +46 -42
- scitex/scholar/url_finder/translators/individual/bbc_genome.py +37 -25
- scitex/scholar/url_finder/translators/individual/biblioteca_nacional_de_maestros.py +24 -20
- scitex/scholar/url_finder/translators/individual/bibliotheque_archives_nationale_quebec_pistard.py +42 -43
- scitex/scholar/url_finder/translators/individual/bibliotheque_archives_nationales_quebec.py +87 -81
- scitex/scholar/url_finder/translators/individual/bibliotheque_nationale_france.py +39 -37
- scitex/scholar/url_finder/translators/individual/bibsys.py +32 -28
- scitex/scholar/url_finder/translators/individual/bioconductor.py +58 -52
- scitex/scholar/url_finder/translators/individual/biomed_central.py +23 -15
- scitex/scholar/url_finder/translators/individual/biorxiv.py +26 -13
- scitex/scholar/url_finder/translators/individual/blogger.py +39 -43
- scitex/scholar/url_finder/translators/individual/bloomberg.py +48 -52
- scitex/scholar/url_finder/translators/individual/bloomsbury_food_library.py +37 -37
- scitex/scholar/url_finder/translators/individual/bluesky.py +30 -28
- scitex/scholar/url_finder/translators/individual/bnf_isbn.py +1 -1
- scitex/scholar/url_finder/translators/individual/bocc.py +66 -60
- scitex/scholar/url_finder/translators/individual/boe.py +52 -52
- scitex/scholar/url_finder/translators/individual/brill.py +3 -1
- scitex/scholar/url_finder/translators/individual/business_standard.py +36 -38
- scitex/scholar/url_finder/translators/individual/cabi_cab_abstracts.py +39 -41
- scitex/scholar/url_finder/translators/individual/cambridge.py +3 -1
- scitex/scholar/url_finder/translators/individual/cambridge_core.py +30 -24
- scitex/scholar/url_finder/translators/individual/caod.py +50 -46
- scitex/scholar/url_finder/translators/individual/cbc.py +91 -67
- scitex/scholar/url_finder/translators/individual/ccfr_bnf.py +49 -53
- scitex/scholar/url_finder/translators/individual/cia_world_factbook.py +43 -33
- scitex/scholar/url_finder/translators/individual/crossref_rest.py +208 -174
- scitex/scholar/url_finder/translators/individual/current_affairs.py +29 -35
- scitex/scholar/url_finder/translators/individual/dabi.py +70 -66
- scitex/scholar/url_finder/translators/individual/dagens_nyheter.py +3 -1
- scitex/scholar/url_finder/translators/individual/dagstuhl.py +10 -15
- scitex/scholar/url_finder/translators/individual/dar_almandumah.py +13 -9
- scitex/scholar/url_finder/translators/individual/dart_europe.py +19 -22
- scitex/scholar/url_finder/translators/individual/data_gov.py +2 -2
- scitex/scholar/url_finder/translators/individual/databrary.py +27 -28
- scitex/scholar/url_finder/translators/individual/datacite_json.py +152 -137
- scitex/scholar/url_finder/translators/individual/dataverse.py +68 -64
- scitex/scholar/url_finder/translators/individual/daum_news.py +38 -38
- scitex/scholar/url_finder/translators/individual/dblp.py +4 -8
- scitex/scholar/url_finder/translators/individual/dblp_computer_science_bibliography.py +8 -3
- scitex/scholar/url_finder/translators/individual/dbpia.py +5 -3
- scitex/scholar/url_finder/translators/individual/defense_technical_information_center.py +30 -28
- scitex/scholar/url_finder/translators/individual/delpher.py +102 -79
- scitex/scholar/url_finder/translators/individual/demographic_research.py +35 -31
- scitex/scholar/url_finder/translators/individual/denik_cz.py +58 -54
- scitex/scholar/url_finder/translators/individual/depatisnet.py +7 -10
- scitex/scholar/url_finder/translators/individual/der_freitag.py +81 -66
- scitex/scholar/url_finder/translators/individual/der_spiegel.py +56 -54
- scitex/scholar/url_finder/translators/individual/digibib_net.py +3 -1
- scitex/scholar/url_finder/translators/individual/digizeitschriften.py +3 -1
- scitex/scholar/url_finder/translators/individual/dpla.py +13 -14
- scitex/scholar/url_finder/translators/individual/dspace.py +2 -2
- scitex/scholar/url_finder/translators/individual/ebrary.py +3 -1
- scitex/scholar/url_finder/translators/individual/ebscohost.py +3 -1
- scitex/scholar/url_finder/translators/individual/electronic_colloquium_on_computational_complexity.py +3 -1
- scitex/scholar/url_finder/translators/individual/elife.py +3 -1
- scitex/scholar/url_finder/translators/individual/elsevier_health_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/emerald.py +3 -1
- scitex/scholar/url_finder/translators/individual/emerald_insight.py +3 -1
- scitex/scholar/url_finder/translators/individual/epicurious.py +3 -1
- scitex/scholar/url_finder/translators/individual/eurogamerusgamer.py +3 -1
- scitex/scholar/url_finder/translators/individual/fachportal_padagogik.py +3 -1
- scitex/scholar/url_finder/translators/individual/frontiers.py +1 -1
- scitex/scholar/url_finder/translators/individual/gale_databases.py +3 -1
- scitex/scholar/url_finder/translators/individual/gms_german_medical_science.py +6 -2
- scitex/scholar/url_finder/translators/individual/ieee_computer_society.py +6 -2
- scitex/scholar/url_finder/translators/individual/ieee_xplore.py +41 -35
- scitex/scholar/url_finder/translators/individual/inter_research_science_center.py +6 -2
- scitex/scholar/url_finder/translators/individual/jisc_historical_texts.py +3 -1
- scitex/scholar/url_finder/translators/individual/jstor.py +14 -12
- scitex/scholar/url_finder/translators/individual/korean_national_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/la_times.py +3 -1
- scitex/scholar/url_finder/translators/individual/landesbibliographie_baden_wurttemberg.py +3 -1
- scitex/scholar/url_finder/translators/individual/legislative_insight.py +3 -1
- scitex/scholar/url_finder/translators/individual/libraries_tasmania.py +3 -1
- scitex/scholar/url_finder/translators/individual/library_catalog__koha_.py +3 -1
- scitex/scholar/url_finder/translators/individual/lingbuzz.py +2 -2
- scitex/scholar/url_finder/translators/individual/max_planck_institute_for_the_history_of_science_virtual_laboratory_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/mdpi.py +12 -6
- scitex/scholar/url_finder/translators/individual/microbiology_society_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/midas_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/nagoya_university_opac.py +3 -1
- scitex/scholar/url_finder/translators/individual/nature_publishing_group.py +32 -19
- scitex/scholar/url_finder/translators/individual/ntsb_accident_reports.py +3 -1
- scitex/scholar/url_finder/translators/individual/openedition_journals.py +8 -4
- scitex/scholar/url_finder/translators/individual/orcid.py +16 -15
- scitex/scholar/url_finder/translators/individual/oxford.py +25 -19
- scitex/scholar/url_finder/translators/individual/oxford_dictionaries_premium.py +3 -1
- scitex/scholar/url_finder/translators/individual/ozon_ru.py +3 -1
- scitex/scholar/url_finder/translators/individual/plos.py +9 -12
- scitex/scholar/url_finder/translators/individual/polygon.py +3 -1
- scitex/scholar/url_finder/translators/individual/primo.py +3 -1
- scitex/scholar/url_finder/translators/individual/project_muse.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubfactory_journals.py +3 -1
- scitex/scholar/url_finder/translators/individual/pubmed.py +71 -65
- scitex/scholar/url_finder/translators/individual/pubmed_central.py +8 -6
- scitex/scholar/url_finder/translators/individual/rechtspraak_nl.py +3 -1
- scitex/scholar/url_finder/translators/individual/sage_journals.py +25 -17
- scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
- scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
- scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
- scitex/scholar/url_finder/translators/individual/sora.py +3 -1
- scitex/scholar/url_finder/translators/individual/springer.py +15 -11
- scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
- scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
- scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
- scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
- scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
- scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
- scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
- scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
- scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
- scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
- scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
- scitex/scholar/utils/text/_TextNormalizer.py +249 -176
- scitex/scholar/utils/validation/DOIValidator.py +31 -28
- scitex/scholar/utils/validation/__init__.py +0 -0
- scitex/scholar/utils/validation/validate_library_dois.py +61 -57
- scitex/scholar/zotero/__init__.py +1 -1
- scitex/security/cli.py +7 -20
- scitex/security/github.py +45 -32
- scitex/session/__init__.py +8 -9
- scitex/session/_decorator.py +49 -42
- scitex/session/_lifecycle.py +39 -39
- scitex/session/_manager.py +24 -20
- scitex/sh/__init__.py +4 -3
- scitex/sh/_execute.py +10 -7
- scitex/sh/_security.py +3 -3
- scitex/sh/_types.py +2 -3
- scitex/stats/__init__.py +57 -6
- scitex/stats/_schema.py +42 -569
- scitex/stats/auto/__init__.py +188 -0
- scitex/stats/auto/_context.py +331 -0
- scitex/stats/auto/_formatting.py +679 -0
- scitex/stats/auto/_rules.py +901 -0
- scitex/stats/auto/_selector.py +554 -0
- scitex/stats/auto/_styles.py +721 -0
- scitex/stats/correct/__init__.py +4 -4
- scitex/stats/correct/_correct_bonferroni.py +43 -34
- scitex/stats/correct/_correct_fdr.py +14 -40
- scitex/stats/correct/_correct_fdr_.py +39 -46
- scitex/stats/correct/_correct_holm.py +14 -32
- scitex/stats/correct/_correct_sidak.py +36 -21
- scitex/stats/descriptive/_circular.py +20 -21
- scitex/stats/descriptive/_describe.py +19 -5
- scitex/stats/descriptive/_nan.py +5 -7
- scitex/stats/descriptive/_real.py +4 -3
- scitex/stats/effect_sizes/__init__.py +10 -11
- scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
- scitex/stats/effect_sizes/_cohens_d.py +30 -31
- scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
- scitex/stats/effect_sizes/_eta_squared.py +23 -27
- scitex/stats/effect_sizes/_prob_superiority.py +18 -21
- scitex/stats/posthoc/__init__.py +3 -3
- scitex/stats/posthoc/_dunnett.py +75 -55
- scitex/stats/posthoc/_games_howell.py +61 -43
- scitex/stats/posthoc/_tukey_hsd.py +42 -34
- scitex/stats/power/__init__.py +2 -2
- scitex/stats/power/_power.py +56 -56
- scitex/stats/tests/__init__.py +1 -1
- scitex/stats/tests/correlation/__init__.py +1 -1
- scitex/stats/tests/correlation/_test_pearson.py +28 -38
- scitex/stats/utils/__init__.py +14 -17
- scitex/stats/utils/_effect_size.py +85 -78
- scitex/stats/utils/_formatters.py +49 -43
- scitex/stats/utils/_normalizers.py +7 -14
- scitex/stats/utils/_power.py +56 -56
- scitex/str/__init__.py +1 -0
- scitex/str/_clean_path.py +3 -3
- scitex/str/_factor_out_digits.py +86 -58
- scitex/str/_format_plot_text.py +180 -111
- scitex/str/_latex.py +19 -19
- scitex/str/_latex_fallback.py +9 -10
- scitex/str/_parse.py +3 -6
- scitex/str/_print_debug.py +13 -13
- scitex/str/_printc.py +2 -0
- scitex/str/_search.py +3 -3
- scitex/template/.legacy/_clone_project.py +9 -13
- scitex/template/__init__.py +10 -2
- scitex/template/_clone_project.py +7 -2
- scitex/template/_copy.py +1 -0
- scitex/template/_customize.py +3 -6
- scitex/template/_git_strategy.py +2 -3
- scitex/template/_rename.py +1 -0
- scitex/template/clone_pip_project.py +6 -7
- scitex/template/clone_research.py +7 -10
- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/vis/__init__.py +0 -0
- scitex/vis/backend/__init__.py +3 -3
- scitex/vis/backend/{export.py → _export.py} +1 -1
- scitex/vis/backend/{parser.py → _parser.py} +1 -3
- scitex/vis/backend/{render.py → _render.py} +1 -1
- scitex/vis/canvas.py +15 -3
- scitex/vis/editor/__init__.py +0 -0
- scitex/vis/editor/_dearpygui_editor.py +450 -304
- scitex/vis/editor/_defaults.py +114 -123
- scitex/vis/editor/_edit.py +38 -26
- scitex/vis/editor/_flask_editor.py +8 -8
- scitex/vis/editor/_mpl_editor.py +63 -48
- scitex/vis/editor/_qt_editor.py +210 -159
- scitex/vis/editor/_tkinter_editor.py +146 -89
- scitex/vis/editor/flask_editor/__init__.py +10 -10
- scitex/vis/editor/flask_editor/_bbox.py +529 -0
- scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
- scitex/vis/editor/flask_editor/_plotter.py +567 -0
- scitex/vis/editor/flask_editor/_renderer.py +393 -0
- scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
- scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
- scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
- scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
- scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
- scitex/vis/io/__init__.py +5 -5
- scitex/vis/io/{canvas.py → _canvas.py} +8 -4
- scitex/vis/io/{data.py → _data.py} +13 -9
- scitex/vis/io/{directory.py → _directory.py} +7 -4
- scitex/vis/io/{export.py → _export.py} +15 -12
- scitex/vis/io/{load.py → _load.py} +1 -1
- scitex/vis/io/{panel.py → _panel.py} +21 -13
- scitex/vis/io/{save.py → _save.py} +0 -0
- scitex/vis/model/__init__.py +7 -7
- scitex/vis/model/{annotations.py → _annotations.py} +2 -4
- scitex/vis/model/{axes.py → _axes.py} +1 -1
- scitex/vis/model/{figure.py → _figure.py} +0 -0
- scitex/vis/model/{guides.py → _guides.py} +1 -1
- scitex/vis/model/{plot.py → _plot.py} +2 -4
- scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
- scitex/vis/model/{styles.py → _styles.py} +0 -0
- scitex/vis/utils/__init__.py +2 -2
- scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
- scitex/vis/utils/{validate.py → _validate.py} +3 -9
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
|
@@ -33,18 +33,18 @@ class ChristianScienceMonitorTranslator:
|
|
|
33
33
|
"inRepository": True,
|
|
34
34
|
"translatorType": 4,
|
|
35
35
|
"browserSupport": "gcsibv",
|
|
36
|
-
"lastUpdated": "2016-11-01 18:26:01"
|
|
36
|
+
"lastUpdated": "2016-11-01 18:26:01",
|
|
37
37
|
}
|
|
38
38
|
|
|
39
39
|
def detect_web(self, doc: BeautifulSoup, url: str) -> str:
|
|
40
40
|
"""Detect if page is an article or search results."""
|
|
41
|
-
if doc.select_one(
|
|
42
|
-
return
|
|
41
|
+
if doc.select_one("h1#headline"):
|
|
42
|
+
return "magazineArticle"
|
|
43
43
|
|
|
44
|
-
if
|
|
45
|
-
return
|
|
44
|
+
if "/content/search?" in url:
|
|
45
|
+
return "multiple"
|
|
46
46
|
|
|
47
|
-
return
|
|
47
|
+
return ""
|
|
48
48
|
|
|
49
49
|
def do_web(self, doc: BeautifulSoup, url: str) -> Dict[str, Any]:
|
|
50
50
|
"""Extract article data."""
|
|
@@ -62,46 +62,44 @@ class ChristianScienceMonitorTranslator:
|
|
|
62
62
|
Dictionary containing article metadata
|
|
63
63
|
"""
|
|
64
64
|
item = {
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
|
|
65
|
+
"itemType": "magazineArticle",
|
|
66
|
+
"creators": [],
|
|
67
|
+
"tags": [],
|
|
68
|
+
"attachments": [],
|
|
69
|
+
"url": url,
|
|
70
|
+
"ISSN": "0882-7729",
|
|
71
|
+
"publicationTitle": "Christian Science Monitor",
|
|
72
72
|
}
|
|
73
73
|
|
|
74
74
|
# Title
|
|
75
|
-
headline = doc.select_one(
|
|
75
|
+
headline = doc.select_one("h1#headline")
|
|
76
76
|
if headline:
|
|
77
|
-
item[
|
|
77
|
+
item["title"] = headline.get_text().strip()
|
|
78
78
|
|
|
79
79
|
# Authors
|
|
80
|
-
author_meta = doc.find(
|
|
81
|
-
if author_meta and author_meta.get(
|
|
82
|
-
author_text = author_meta[
|
|
80
|
+
author_meta = doc.find("meta", attrs={"name": "sailthru.author"})
|
|
81
|
+
if author_meta and author_meta.get("content"):
|
|
82
|
+
author_text = author_meta["content"]
|
|
83
83
|
# Handle multiple authors
|
|
84
|
-
authors = [a.strip() for a in author_text.split(
|
|
84
|
+
authors = [a.strip() for a in author_text.split(",")]
|
|
85
85
|
for author in authors:
|
|
86
86
|
if author:
|
|
87
|
-
item[
|
|
87
|
+
item["creators"].append(self._clean_author(author))
|
|
88
88
|
|
|
89
89
|
# Date
|
|
90
|
-
date_elem = doc.select_one(
|
|
91
|
-
if date_elem and date_elem.get(
|
|
92
|
-
item[
|
|
90
|
+
date_elem = doc.select_one("time#date-published")
|
|
91
|
+
if date_elem and date_elem.get("datetime"):
|
|
92
|
+
item["date"] = date_elem["datetime"]
|
|
93
93
|
|
|
94
94
|
# Abstract
|
|
95
|
-
summary = doc.select_one(
|
|
95
|
+
summary = doc.select_one("h2#summary")
|
|
96
96
|
if summary:
|
|
97
|
-
item[
|
|
97
|
+
item["abstractNote"] = summary.get_text().strip()
|
|
98
98
|
|
|
99
99
|
# Snapshot attachment
|
|
100
|
-
item[
|
|
101
|
-
|
|
102
|
-
|
|
103
|
-
'url': url
|
|
104
|
-
})
|
|
100
|
+
item["attachments"].append(
|
|
101
|
+
{"title": "CS Monitor Snapshot", "mimeType": "text/html", "url": url}
|
|
102
|
+
)
|
|
105
103
|
|
|
106
104
|
return item
|
|
107
105
|
|
|
@@ -112,13 +110,9 @@ class ChristianScienceMonitorTranslator:
|
|
|
112
110
|
|
|
113
111
|
if len(parts) >= 2:
|
|
114
112
|
return {
|
|
115
|
-
|
|
116
|
-
|
|
117
|
-
|
|
113
|
+
"firstName": " ".join(parts[:-1]),
|
|
114
|
+
"lastName": parts[-1],
|
|
115
|
+
"creatorType": "author",
|
|
118
116
|
}
|
|
119
117
|
else:
|
|
120
|
-
return {
|
|
121
|
-
'lastName': name,
|
|
122
|
-
'creatorType': 'author',
|
|
123
|
-
'fieldMode': True
|
|
124
|
-
}
|
|
118
|
+
return {"lastName": name, "creatorType": "author", "fieldMode": True}
|
|
@@ -34,7 +34,7 @@ class ColumbiaUniversityPressTranslator:
|
|
|
34
34
|
"inRepository": True,
|
|
35
35
|
"translatorType": 4,
|
|
36
36
|
"browserSupport": "gcsibv",
|
|
37
|
-
"lastUpdated": "2016-09-10 11:35:07"
|
|
37
|
+
"lastUpdated": "2016-09-10 11:35:07",
|
|
38
38
|
}
|
|
39
39
|
|
|
40
40
|
def detect_web(self, doc: BeautifulSoup, url: str) -> str:
|
|
@@ -54,7 +54,9 @@ class ColumbiaUniversityPressTranslator:
|
|
|
54
54
|
return "multiple"
|
|
55
55
|
return ""
|
|
56
56
|
|
|
57
|
-
def _get_search_results(
|
|
57
|
+
def _get_search_results(
|
|
58
|
+
self, doc: BeautifulSoup, check_only: bool = False
|
|
59
|
+
) -> Dict[str, str]:
|
|
58
60
|
"""
|
|
59
61
|
Get search results from the page.
|
|
60
62
|
|
|
@@ -67,10 +69,10 @@ class ColumbiaUniversityPressTranslator:
|
|
|
67
69
|
"""
|
|
68
70
|
items = {}
|
|
69
71
|
found = False
|
|
70
|
-
rows = doc.select(
|
|
72
|
+
rows = doc.select("div.search-list h2 > a")
|
|
71
73
|
|
|
72
74
|
for row in rows:
|
|
73
|
-
href = row.get(
|
|
75
|
+
href = row.get("href")
|
|
74
76
|
title = row.get_text(strip=True)
|
|
75
77
|
if not href or not title:
|
|
76
78
|
continue
|
|
@@ -111,31 +113,33 @@ class ColumbiaUniversityPressTranslator:
|
|
|
111
113
|
Dictionary containing book metadata
|
|
112
114
|
"""
|
|
113
115
|
item = {
|
|
114
|
-
|
|
115
|
-
|
|
116
|
-
|
|
117
|
-
|
|
118
|
-
|
|
119
|
-
|
|
116
|
+
"itemType": "book",
|
|
117
|
+
"creators": [],
|
|
118
|
+
"tags": [],
|
|
119
|
+
"attachments": [],
|
|
120
|
+
"notes": [],
|
|
121
|
+
"seeAlso": [],
|
|
120
122
|
}
|
|
121
123
|
|
|
122
124
|
# Extract title
|
|
123
|
-
title_elem = doc.select_one(
|
|
125
|
+
title_elem = doc.select_one("div.book-header h1.title")
|
|
124
126
|
if title_elem:
|
|
125
|
-
item[
|
|
127
|
+
item["title"] = title_elem.get_text(strip=True)
|
|
126
128
|
|
|
127
129
|
# Extract book details
|
|
128
|
-
book_details = doc.select(
|
|
130
|
+
book_details = doc.select(
|
|
131
|
+
"div.book-header.pc-only p[class], div.book-details p[class]"
|
|
132
|
+
)
|
|
129
133
|
|
|
130
134
|
for detail in book_details:
|
|
131
|
-
class_name =
|
|
135
|
+
class_name = " ".join(detail.get("class", []))
|
|
132
136
|
content = detail.get_text(strip=True)
|
|
133
137
|
|
|
134
|
-
if class_name ==
|
|
135
|
-
if
|
|
136
|
-
item[
|
|
138
|
+
if class_name == "subtitle":
|
|
139
|
+
if "title" in item:
|
|
140
|
+
item["title"] = f"{item['title']}: {content}"
|
|
137
141
|
|
|
138
|
-
elif class_name ==
|
|
142
|
+
elif class_name == "author":
|
|
139
143
|
# Parse creators (authors, editors, translators)
|
|
140
144
|
creator_string = content
|
|
141
145
|
|
|
@@ -149,54 +153,58 @@ class ColumbiaUniversityPressTranslator:
|
|
|
149
153
|
pos_translators = len(creator_string)
|
|
150
154
|
|
|
151
155
|
# Extract authors
|
|
152
|
-
authors_str = creator_string[:min(pos_editors, pos_translators)]
|
|
153
|
-
authors = re.split(r
|
|
156
|
+
authors_str = creator_string[: min(pos_editors, pos_translators)]
|
|
157
|
+
authors = re.split(r"\band\b|,", authors_str)
|
|
154
158
|
for author in authors:
|
|
155
159
|
author = author.strip()
|
|
156
160
|
if author:
|
|
157
|
-
item[
|
|
161
|
+
item["creators"].append(self._clean_author(author, "author"))
|
|
158
162
|
|
|
159
163
|
# Extract editors
|
|
160
164
|
if pos_editors < len(creator_string):
|
|
161
165
|
editors_str = creator_string[pos_editors:pos_translators]
|
|
162
|
-
editors_str = re.sub(r
|
|
163
|
-
editors = re.split(r
|
|
166
|
+
editors_str = re.sub(r"Edited\s*(by)?", "", editors_str)
|
|
167
|
+
editors = re.split(r"\band\b|,", editors_str)
|
|
164
168
|
for editor in editors:
|
|
165
169
|
editor = editor.strip()
|
|
166
170
|
if editor:
|
|
167
|
-
item[
|
|
171
|
+
item["creators"].append(
|
|
172
|
+
self._clean_author(editor, "editor")
|
|
173
|
+
)
|
|
168
174
|
|
|
169
175
|
# Extract translators
|
|
170
176
|
if pos_translators < len(creator_string):
|
|
171
177
|
translators_str = creator_string[pos_translators:]
|
|
172
|
-
translators_str = re.sub(r
|
|
173
|
-
translators = re.split(r
|
|
178
|
+
translators_str = re.sub(r"Translated\s*(by)?", "", translators_str)
|
|
179
|
+
translators = re.split(r"\band\b|,", translators_str)
|
|
174
180
|
for translator in translators:
|
|
175
181
|
translator = translator.strip()
|
|
176
182
|
if translator:
|
|
177
|
-
item[
|
|
183
|
+
item["creators"].append(
|
|
184
|
+
self._clean_author(translator, "translator")
|
|
185
|
+
)
|
|
178
186
|
|
|
179
|
-
elif class_name ==
|
|
187
|
+
elif class_name == "pubdate":
|
|
180
188
|
# Convert date to ISO format
|
|
181
|
-
item[
|
|
189
|
+
item["date"] = content
|
|
182
190
|
|
|
183
|
-
elif class_name ==
|
|
184
|
-
item[
|
|
191
|
+
elif class_name == "publisher":
|
|
192
|
+
item["publisher"] = content
|
|
185
193
|
|
|
186
|
-
elif class_name ==
|
|
187
|
-
item[
|
|
194
|
+
elif class_name == "isbn":
|
|
195
|
+
item["ISBN"] = content
|
|
188
196
|
|
|
189
|
-
elif class_name ==
|
|
190
|
-
item[
|
|
197
|
+
elif class_name == "pages":
|
|
198
|
+
item["pages"] = content
|
|
191
199
|
|
|
192
200
|
# If there is no publisher field, assume it's published by CUP
|
|
193
|
-
if
|
|
194
|
-
item[
|
|
201
|
+
if "publisher" not in item:
|
|
202
|
+
item["publisher"] = "Columbia University Press"
|
|
195
203
|
|
|
196
204
|
# Extract abstract
|
|
197
|
-
abstract_elem = doc.select_one(
|
|
205
|
+
abstract_elem = doc.select_one("div.sp__the-description")
|
|
198
206
|
if abstract_elem:
|
|
199
|
-
item[
|
|
207
|
+
item["abstractNote"] = abstract_elem.get_text(strip=True)
|
|
200
208
|
|
|
201
209
|
return item
|
|
202
210
|
|
|
@@ -216,13 +224,9 @@ class ColumbiaUniversityPressTranslator:
|
|
|
216
224
|
|
|
217
225
|
if len(parts) >= 2:
|
|
218
226
|
return {
|
|
219
|
-
|
|
220
|
-
|
|
221
|
-
|
|
227
|
+
"firstName": " ".join(parts[:-1]),
|
|
228
|
+
"lastName": parts[-1],
|
|
229
|
+
"creatorType": creator_type,
|
|
222
230
|
}
|
|
223
231
|
else:
|
|
224
|
-
return {
|
|
225
|
-
'lastName': name,
|
|
226
|
-
'creatorType': creator_type,
|
|
227
|
-
'fieldMode': True
|
|
228
|
-
}
|
|
232
|
+
return {"lastName": name, "creatorType": creator_type, "fieldMode": True}
|
|
@@ -34,7 +34,7 @@ class CommonPlaceTranslator:
|
|
|
34
34
|
"inRepository": True,
|
|
35
35
|
"translatorType": 4,
|
|
36
36
|
"browserSupport": "gcsibv",
|
|
37
|
-
"lastUpdated": "2016-09-10 09:34:34"
|
|
37
|
+
"lastUpdated": "2016-09-10 09:34:34",
|
|
38
38
|
}
|
|
39
39
|
|
|
40
40
|
def detect_web(self, doc: BeautifulSoup, url: str) -> str:
|
|
@@ -50,11 +50,16 @@ class CommonPlaceTranslator:
|
|
|
50
50
|
"""
|
|
51
51
|
if self._get_search_results(doc, True):
|
|
52
52
|
return "multiple"
|
|
53
|
-
elif
|
|
53
|
+
elif (
|
|
54
|
+
"single-article" in doc.body.get("class", [])
|
|
55
|
+
or "common-place-archives.org" in url
|
|
56
|
+
):
|
|
54
57
|
return "journalArticle"
|
|
55
58
|
return ""
|
|
56
59
|
|
|
57
|
-
def _get_search_results(
|
|
60
|
+
def _get_search_results(
|
|
61
|
+
self, doc: BeautifulSoup, check_only: bool = False
|
|
62
|
+
) -> Dict[str, str]:
|
|
58
63
|
"""
|
|
59
64
|
Get search results from the page.
|
|
60
65
|
|
|
@@ -67,10 +72,10 @@ class CommonPlaceTranslator:
|
|
|
67
72
|
"""
|
|
68
73
|
items = {}
|
|
69
74
|
found = False
|
|
70
|
-
rows = doc.select(
|
|
75
|
+
rows = doc.select("h3.article-title > a, h2 > a")
|
|
71
76
|
|
|
72
77
|
for row in rows:
|
|
73
|
-
href = row.get(
|
|
78
|
+
href = row.get("href")
|
|
74
79
|
title = row.get_text(strip=True)
|
|
75
80
|
if not href or not title:
|
|
76
81
|
continue
|
|
@@ -109,46 +114,46 @@ class CommonPlaceTranslator:
|
|
|
109
114
|
Dictionary containing article metadata
|
|
110
115
|
"""
|
|
111
116
|
item = {
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
115
|
-
|
|
116
|
-
|
|
117
|
-
|
|
118
|
-
|
|
119
|
-
|
|
117
|
+
"itemType": "journalArticle",
|
|
118
|
+
"publicationTitle": "Common-Place",
|
|
119
|
+
"url": url,
|
|
120
|
+
"creators": [],
|
|
121
|
+
"tags": [],
|
|
122
|
+
"attachments": [],
|
|
123
|
+
"notes": [],
|
|
124
|
+
"seeAlso": [],
|
|
120
125
|
}
|
|
121
126
|
|
|
122
|
-
if "single-article" in doc.body.get(
|
|
127
|
+
if "single-article" in doc.body.get("class", []):
|
|
123
128
|
# New format
|
|
124
|
-
title_elem = doc.select_one(
|
|
129
|
+
title_elem = doc.select_one("article h1")
|
|
125
130
|
if title_elem:
|
|
126
|
-
item[
|
|
131
|
+
item["title"] = title_elem.get_text(strip=True)
|
|
127
132
|
|
|
128
|
-
author_elem = doc.select_one(
|
|
133
|
+
author_elem = doc.select_one("article h1 + p")
|
|
129
134
|
if author_elem:
|
|
130
135
|
author = author_elem.get_text(strip=True)
|
|
131
|
-
item[
|
|
136
|
+
item["creators"].append(self._clean_author(author, "author"))
|
|
132
137
|
|
|
133
|
-
abstract_elem = doc.select_one(
|
|
138
|
+
abstract_elem = doc.select_one("article div.entry-excerpt")
|
|
134
139
|
if abstract_elem:
|
|
135
|
-
item[
|
|
140
|
+
item["abstractNote"] = abstract_elem.get_text(strip=True)
|
|
136
141
|
|
|
137
142
|
# Extract date from breadcrumb
|
|
138
|
-
date_elem = doc.select_one(
|
|
143
|
+
date_elem = doc.select_one("article ol.breadcrumb li")
|
|
139
144
|
if date_elem:
|
|
140
145
|
# Get text nodes only
|
|
141
|
-
date_text =
|
|
142
|
-
item[
|
|
146
|
+
date_text = "".join([t for t in date_elem.stripped_strings if t])
|
|
147
|
+
item["date"] = date_text
|
|
143
148
|
|
|
144
149
|
# Extract volume and issue
|
|
145
|
-
volno_elem = doc.select_one(
|
|
150
|
+
volno_elem = doc.select_one("article ol.breadcrumb li:first-child a")
|
|
146
151
|
if volno_elem:
|
|
147
152
|
volno = volno_elem.get_text(strip=True)
|
|
148
|
-
m = re.search(r
|
|
153
|
+
m = re.search(r"Vol\.\s*(\d+)\s+No\.\s*(\d+)", volno)
|
|
149
154
|
if m:
|
|
150
|
-
item[
|
|
151
|
-
item[
|
|
155
|
+
item["volume"] = m.group(1)
|
|
156
|
+
item["issue"] = m.group(2)
|
|
152
157
|
|
|
153
158
|
else:
|
|
154
159
|
# Old format
|
|
@@ -157,16 +162,16 @@ class CommonPlaceTranslator:
|
|
|
157
162
|
date_re = r'<a href="/vol-(\d+)/no-(\d+)/">([^<]*)</a>'
|
|
158
163
|
m = re.search(date_re, body_html)
|
|
159
164
|
if m:
|
|
160
|
-
item[
|
|
161
|
-
item[
|
|
165
|
+
item["volume"] = m.group(1)
|
|
166
|
+
item["issue"] = m.group(2)
|
|
162
167
|
# Extract month and year from the third group
|
|
163
168
|
issue_info = m.group(3)
|
|
164
|
-
month_match = re.search(r
|
|
169
|
+
month_match = re.search(r"·\s*([\w\s]+)$", issue_info)
|
|
165
170
|
if month_match:
|
|
166
|
-
item[
|
|
171
|
+
item["date"] = month_match.group(1)
|
|
167
172
|
|
|
168
|
-
author = doc.select_one(
|
|
169
|
-
title = doc.select_one(
|
|
173
|
+
author = doc.select_one("div#content p span:nth-of-type(1)")
|
|
174
|
+
title = doc.select_one("div#content p span:nth-of-type(2)")
|
|
170
175
|
|
|
171
176
|
if author and title:
|
|
172
177
|
author_text = author.get_text(strip=True)
|
|
@@ -177,34 +182,42 @@ class CommonPlaceTranslator:
|
|
|
177
182
|
title_text = "Review of " + title_text
|
|
178
183
|
author_text = author_text.replace("Review by", "").strip()
|
|
179
184
|
|
|
180
|
-
item[
|
|
181
|
-
item[
|
|
185
|
+
item["creators"].append(self._clean_author(author_text, "author"))
|
|
186
|
+
item["title"] = title_text
|
|
182
187
|
else:
|
|
183
188
|
# Older issue format
|
|
184
|
-
review_elem = doc.select_one(
|
|
189
|
+
review_elem = doc.select_one(
|
|
190
|
+
"body > table tr > td:nth-child(2) > p:nth-child(2)"
|
|
191
|
+
)
|
|
185
192
|
if review_elem and "Review" in review_elem.get_text():
|
|
186
|
-
title_elem = doc.select_one(
|
|
193
|
+
title_elem = doc.select_one(
|
|
194
|
+
"body > table tr > td:nth-child(2) > p i"
|
|
195
|
+
)
|
|
187
196
|
if title_elem:
|
|
188
|
-
item[
|
|
189
|
-
author_text = review_elem.get_text()[
|
|
197
|
+
item["title"] = "Review of " + title_elem.get_text(strip=True)
|
|
198
|
+
author_text = review_elem.get_text()[
|
|
199
|
+
10:
|
|
200
|
+
].strip() # Skip "Review by "
|
|
190
201
|
else:
|
|
191
|
-
title_elem = doc.select_one(
|
|
202
|
+
title_elem = doc.select_one(
|
|
203
|
+
"body > table tr > td:nth-child(2) > p b"
|
|
204
|
+
)
|
|
192
205
|
if title_elem:
|
|
193
|
-
item[
|
|
194
|
-
author_elem = doc.select_one(
|
|
206
|
+
item["title"] = title_elem.get_text(strip=True)
|
|
207
|
+
author_elem = doc.select_one(
|
|
208
|
+
"body > table tr > td:nth-child(2) > p:first-child"
|
|
209
|
+
)
|
|
195
210
|
if author_elem:
|
|
196
|
-
lines = author_elem.get_text().split(
|
|
211
|
+
lines = author_elem.get_text().split("\n")
|
|
197
212
|
author_text = lines[1].strip() if len(lines) > 1 else ""
|
|
198
213
|
|
|
199
214
|
if author_text:
|
|
200
|
-
item[
|
|
215
|
+
item["creators"].append(self._clean_author(author_text, "author"))
|
|
201
216
|
|
|
202
217
|
# Add snapshot attachment
|
|
203
|
-
item[
|
|
204
|
-
|
|
205
|
-
|
|
206
|
-
'url': url
|
|
207
|
-
})
|
|
218
|
+
item["attachments"].append(
|
|
219
|
+
{"title": "Snapshot", "mimeType": "text/html", "url": url}
|
|
220
|
+
)
|
|
208
221
|
|
|
209
222
|
return item
|
|
210
223
|
|
|
@@ -224,13 +237,9 @@ class CommonPlaceTranslator:
|
|
|
224
237
|
|
|
225
238
|
if len(parts) >= 2:
|
|
226
239
|
return {
|
|
227
|
-
|
|
228
|
-
|
|
229
|
-
|
|
240
|
+
"firstName": " ".join(parts[:-1]),
|
|
241
|
+
"lastName": parts[-1],
|
|
242
|
+
"creatorType": creator_type,
|
|
230
243
|
}
|
|
231
244
|
else:
|
|
232
|
-
return {
|
|
233
|
-
'lastName': name,
|
|
234
|
-
'creatorType': creator_type,
|
|
235
|
-
'fieldMode': True
|
|
236
|
-
}
|
|
245
|
+
return {"lastName": name, "creatorType": creator_type, "fieldMode": True}
|