scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +19 -8
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +2 -1
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +6 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +6 -12
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +4 -9
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +5 -1
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
- scitex/io/_load_modules/_pdf.py +38 -29
- scitex/io/_load_modules/_sqlite3.py +1 -0
- scitex/io/_load_modules/_txt.py +2 -0
- scitex/io/_load_modules/_xml.py +9 -9
- scitex/io/_load_modules/_zarr.py +12 -10
- scitex/io/_metadata.py +76 -37
- scitex/io/_qr_utils.py +18 -13
- scitex/io/_save.py +220 -63
- scitex/io/_save_modules/__init__.py +7 -2
- scitex/io/_save_modules/_bibtex.py +66 -61
- scitex/io/_save_modules/_canvas.py +5 -6
- scitex/io/_save_modules/_catboost.py +2 -2
- scitex/io/_save_modules/_csv.py +4 -4
- scitex/io/_save_modules/_excel.py +5 -9
- scitex/io/_save_modules/_hdf5.py +9 -21
- scitex/io/_save_modules/_html.py +5 -5
- scitex/io/_save_modules/_image.py +105 -8
- scitex/io/_save_modules/_joblib.py +2 -2
- scitex/io/_save_modules/_json.py +51 -6
- scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
- scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
- scitex/io/_save_modules/_matlab.py +2 -2
- scitex/io/_save_modules/_numpy.py +6 -8
- scitex/io/_save_modules/_pickle.py +4 -4
- scitex/io/_save_modules/_plotly.py +3 -3
- scitex/io/_save_modules/_tex.py +23 -25
- scitex/io/_save_modules/_text.py +2 -2
- scitex/io/_save_modules/_yaml.py +9 -9
- scitex/io/_save_modules/_zarr.py +15 -15
- scitex/io/utils/__init__.py +2 -1
- scitex/io/utils/h5_to_zarr.py +173 -155
- scitex/linalg/__init__.py +1 -1
- scitex/linalg/_geometric_median.py +4 -3
- scitex/logging/_Tee.py +5 -7
- scitex/logging/__init__.py +18 -19
- scitex/logging/_config.py +4 -1
- scitex/logging/_context.py +6 -5
- scitex/logging/_formatters.py +2 -3
- scitex/logging/_handlers.py +19 -20
- scitex/logging/_levels.py +9 -17
- scitex/logging/_logger.py +74 -15
- scitex/logging/_print_capture.py +17 -17
- scitex/nn/_BNet.py +1 -3
- scitex/nn/_Filters.py +6 -2
- scitex/nn/_ModulationIndex.py +3 -1
- scitex/nn/_PAC.py +3 -2
- scitex/nn/_PSD.py +0 -1
- scitex/nn/__init__.py +16 -3
- scitex/path/_clean.py +10 -8
- scitex/path/_find.py +1 -1
- scitex/path/_get_spath.py +1 -2
- scitex/path/_mk_spath.py +1 -1
- scitex/path/_symlink.py +5 -10
- scitex/pd/__init__.py +4 -1
- scitex/pd/_force_df.py +24 -24
- scitex/pd/_get_unique.py +1 -0
- scitex/pd/_merge_columns.py +1 -1
- scitex/pd/_round.py +11 -7
- scitex/pd/_to_xy.py +0 -1
- scitex/plt/REQUESTS.md +191 -0
- scitex/plt/__init__.py +185 -87
- scitex/plt/_subplots/_AxesWrapper.py +22 -6
- scitex/plt/_subplots/_AxisWrapper.py +100 -39
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
- scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
- scitex/plt/_subplots/_FigWrapper.py +93 -60
- scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
- scitex/plt/_subplots/__init__.py +10 -0
- scitex/plt/_subplots/_export_as_csv.py +89 -47
- scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
- scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
- scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
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- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/vis/__init__.py +0 -0
- scitex/vis/backend/__init__.py +3 -3
- scitex/vis/backend/{export.py → _export.py} +1 -1
- scitex/vis/backend/{parser.py → _parser.py} +1 -3
- scitex/vis/backend/{render.py → _render.py} +1 -1
- scitex/vis/canvas.py +15 -3
- scitex/vis/editor/__init__.py +0 -0
- scitex/vis/editor/_dearpygui_editor.py +450 -304
- scitex/vis/editor/_defaults.py +114 -123
- scitex/vis/editor/_edit.py +38 -26
- scitex/vis/editor/_flask_editor.py +8 -8
- scitex/vis/editor/_mpl_editor.py +63 -48
- scitex/vis/editor/_qt_editor.py +210 -159
- scitex/vis/editor/_tkinter_editor.py +146 -89
- scitex/vis/editor/flask_editor/__init__.py +10 -10
- scitex/vis/editor/flask_editor/_bbox.py +529 -0
- scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
- scitex/vis/editor/flask_editor/_plotter.py +567 -0
- scitex/vis/editor/flask_editor/_renderer.py +393 -0
- scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
- scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
- scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
- scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
- scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
- scitex/vis/io/__init__.py +5 -5
- scitex/vis/io/{canvas.py → _canvas.py} +8 -4
- scitex/vis/io/{data.py → _data.py} +13 -9
- scitex/vis/io/{directory.py → _directory.py} +7 -4
- scitex/vis/io/{export.py → _export.py} +15 -12
- scitex/vis/io/{load.py → _load.py} +1 -1
- scitex/vis/io/{panel.py → _panel.py} +21 -13
- scitex/vis/io/{save.py → _save.py} +0 -0
- scitex/vis/model/__init__.py +7 -7
- scitex/vis/model/{annotations.py → _annotations.py} +2 -4
- scitex/vis/model/{axes.py → _axes.py} +1 -1
- scitex/vis/model/{figure.py → _figure.py} +0 -0
- scitex/vis/model/{guides.py → _guides.py} +1 -1
- scitex/vis/model/{plot.py → _plot.py} +2 -4
- scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
- scitex/vis/model/{styles.py → _styles.py} +0 -0
- scitex/vis/utils/__init__.py +2 -2
- scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
- scitex/vis/utils/{validate.py → _validate.py} +3 -9
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/editor/flask_editor/bbox.py +0 -216
- scitex/vis/editor/flask_editor/plotter.py +0 -130
- scitex/vis/editor/flask_editor/renderer.py +0 -184
- scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
scitex/vis/editor/_qt_editor.py
CHANGED
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@@ -13,24 +13,28 @@ def _get_qt():
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13
13
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"""Get Qt bindings (PyQt6, PyQt5, PySide6, or PySide2)."""
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try:
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from PyQt6 import QtWidgets, QtCore, QtGui
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+
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return QtWidgets, QtCore, QtGui, "PyQt6"
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except ImportError:
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19
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pass
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20
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try:
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22
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from PyQt5 import QtWidgets, QtCore, QtGui
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+
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return QtWidgets, QtCore, QtGui, "PyQt5"
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except ImportError:
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pass
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try:
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from PySide6 import QtWidgets, QtCore, QtGui
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+
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28
31
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return QtWidgets, QtCore, QtGui, "PySide6"
|
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29
32
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except ImportError:
|
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30
33
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pass
|
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31
34
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35
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try:
|
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36
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from PySide2 import QtWidgets, QtCore, QtGui
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+
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34
38
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return QtWidgets, QtCore, QtGui, "PySide2"
|
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except ImportError:
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40
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pass
|
|
@@ -70,6 +74,7 @@ class QtEditor:
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70
74
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# Get SciTeX defaults and merge with metadata
|
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from ._defaults import get_scitex_defaults, extract_defaults_from_metadata
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77
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+
|
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self.scitex_defaults = get_scitex_defaults()
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self.metadata_defaults = extract_defaults_from_metadata(metadata)
|
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75
80
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@@ -99,13 +104,11 @@ class QtEditor:
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104
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self.app = QtWidgets.QApplication([])
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# Create main window
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-
self.main_window = QtEditorWindow(
|
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self, QtWidgets, QtCore, QtGui, qt_version
|
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-
)
|
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107
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+
self.main_window = QtEditorWindow(self, QtWidgets, QtCore, QtGui, qt_version)
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self.main_window.show()
|
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# Start event loop
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-
self.app.exec() if hasattr(self.app,
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self.app.exec() if hasattr(self.app, "exec") else self.app.exec_()
|
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112
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class QtEditorWindow:
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@@ -130,9 +133,11 @@ class QtEditorWindow:
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130
133
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layout = QtWidgets.QHBoxLayout(central_widget)
|
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# Splitter for resizable panels
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splitter = QtWidgets.QSplitter(
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134
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-
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135
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-
|
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136
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+
splitter = QtWidgets.QSplitter(
|
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137
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+
QtCore.Qt.Orientation.Horizontal
|
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138
|
+
if hasattr(QtCore.Qt, "Orientation")
|
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139
|
+
else QtCore.Qt.Horizontal
|
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140
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+
)
|
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136
141
|
layout.addWidget(splitter)
|
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137
142
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|
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138
143
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# Left panel: Canvas
|
|
@@ -237,19 +242,19 @@ class QtEditorWindow:
|
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237
242
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layout = self.QtWidgets.QFormLayout(group)
|
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238
243
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|
|
239
244
|
self.title_edit = self.QtWidgets.QLineEdit(
|
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240
|
-
self.editor.current_overrides.get(
|
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245
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+
self.editor.current_overrides.get("title", "")
|
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241
246
|
)
|
|
242
247
|
self.title_edit.editingFinished.connect(self._on_value_change)
|
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243
248
|
layout.addRow("Title:", self.title_edit)
|
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244
249
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|
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245
250
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self.xlabel_edit = self.QtWidgets.QLineEdit(
|
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246
|
-
self.editor.current_overrides.get(
|
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251
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+
self.editor.current_overrides.get("xlabel", "")
|
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247
252
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)
|
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248
253
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self.xlabel_edit.editingFinished.connect(self._on_value_change)
|
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249
254
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layout.addRow("X Label:", self.xlabel_edit)
|
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250
255
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|
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251
256
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self.ylabel_edit = self.QtWidgets.QLineEdit(
|
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252
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-
self.editor.current_overrides.get(
|
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257
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+
self.editor.current_overrides.get("ylabel", "")
|
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253
258
|
)
|
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254
259
|
self.ylabel_edit.editingFinished.connect(self._on_value_change)
|
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260
|
layout.addRow("Y Label:", self.ylabel_edit)
|
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@@ -261,8 +266,8 @@ class QtEditorWindow:
|
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261
266
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group = self._create_group_box("Axis Limits")
|
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262
267
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layout = self.QtWidgets.QGridLayout(group)
|
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263
268
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264
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-
xlim = self.editor.current_overrides.get(
|
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265
|
-
ylim = self.editor.current_overrides.get(
|
|
269
|
+
xlim = self.editor.current_overrides.get("xlim", [0, 1])
|
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270
|
+
ylim = self.editor.current_overrides.get("ylim", [0, 1])
|
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266
271
|
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267
272
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layout.addWidget(self.QtWidgets.QLabel("X Min:"), 0, 0)
|
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273
|
self.xmin_spin = self.QtWidgets.QDoubleSpinBox()
|
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@@ -306,7 +311,9 @@ class QtEditorWindow:
|
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306
311
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self.linewidth_spin = self.QtWidgets.QDoubleSpinBox()
|
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307
312
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self.linewidth_spin.setRange(0.1, 10.0)
|
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308
313
|
self.linewidth_spin.setSingleStep(0.1)
|
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309
|
-
self.linewidth_spin.setValue(
|
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314
|
+
self.linewidth_spin.setValue(
|
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315
|
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self.editor.current_overrides.get("linewidth", 1.0)
|
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316
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+
)
|
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310
317
|
self.linewidth_spin.valueChanged.connect(self._on_value_change)
|
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311
318
|
layout.addRow("Line Width (pt):", self.linewidth_spin)
|
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312
319
|
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|
@@ -319,25 +326,33 @@ class QtEditorWindow:
|
|
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319
326
|
|
|
320
327
|
self.title_fontsize_spin = self.QtWidgets.QSpinBox()
|
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321
328
|
self.title_fontsize_spin.setRange(6, 24)
|
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322
|
-
self.title_fontsize_spin.setValue(
|
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329
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+
self.title_fontsize_spin.setValue(
|
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330
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+
self.editor.current_overrides.get("title_fontsize", 8)
|
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331
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+
)
|
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323
332
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self.title_fontsize_spin.valueChanged.connect(self._on_value_change)
|
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324
333
|
layout.addRow("Title Font Size:", self.title_fontsize_spin)
|
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325
334
|
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326
335
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self.axis_fontsize_spin = self.QtWidgets.QSpinBox()
|
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327
336
|
self.axis_fontsize_spin.setRange(6, 24)
|
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328
|
-
self.axis_fontsize_spin.setValue(
|
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337
|
+
self.axis_fontsize_spin.setValue(
|
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338
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self.editor.current_overrides.get("axis_fontsize", 7)
|
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339
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+
)
|
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329
340
|
self.axis_fontsize_spin.valueChanged.connect(self._on_value_change)
|
|
330
341
|
layout.addRow("Axis Font Size:", self.axis_fontsize_spin)
|
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331
342
|
|
|
332
343
|
self.tick_fontsize_spin = self.QtWidgets.QSpinBox()
|
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333
344
|
self.tick_fontsize_spin.setRange(6, 24)
|
|
334
|
-
self.tick_fontsize_spin.setValue(
|
|
345
|
+
self.tick_fontsize_spin.setValue(
|
|
346
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+
self.editor.current_overrides.get("tick_fontsize", 7)
|
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347
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+
)
|
|
335
348
|
self.tick_fontsize_spin.valueChanged.connect(self._on_value_change)
|
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336
349
|
layout.addRow("Tick Font Size:", self.tick_fontsize_spin)
|
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337
350
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338
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self.legend_fontsize_spin = self.QtWidgets.QSpinBox()
|
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339
352
|
self.legend_fontsize_spin.setRange(4, 20)
|
|
340
|
-
self.legend_fontsize_spin.setValue(
|
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353
|
+
self.legend_fontsize_spin.setValue(
|
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354
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self.editor.current_overrides.get("legend_fontsize", 6)
|
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355
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+
)
|
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341
356
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self.legend_fontsize_spin.valueChanged.connect(self._on_value_change)
|
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342
357
|
layout.addRow("Legend Font Size:", self.legend_fontsize_spin)
|
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343
358
|
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@@ -350,28 +365,32 @@ class QtEditorWindow:
|
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350
365
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351
366
|
self.n_ticks_spin = self.QtWidgets.QSpinBox()
|
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352
367
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self.n_ticks_spin.setRange(2, 15)
|
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353
|
-
self.n_ticks_spin.setValue(self.editor.current_overrides.get(
|
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368
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+
self.n_ticks_spin.setValue(self.editor.current_overrides.get("n_ticks", 4))
|
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354
369
|
self.n_ticks_spin.valueChanged.connect(self._on_value_change)
|
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355
370
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layout.addRow("N Ticks:", self.n_ticks_spin)
|
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356
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357
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self.tick_length_spin = self.QtWidgets.QDoubleSpinBox()
|
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358
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self.tick_length_spin.setRange(0.1, 5.0)
|
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359
374
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self.tick_length_spin.setSingleStep(0.1)
|
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360
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-
self.tick_length_spin.setValue(
|
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375
|
+
self.tick_length_spin.setValue(
|
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376
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self.editor.current_overrides.get("tick_length", 0.8)
|
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377
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+
)
|
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361
378
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self.tick_length_spin.valueChanged.connect(self._on_value_change)
|
|
362
379
|
layout.addRow("Tick Length (mm):", self.tick_length_spin)
|
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363
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364
381
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self.tick_width_spin = self.QtWidgets.QDoubleSpinBox()
|
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365
382
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self.tick_width_spin.setRange(0.05, 2.0)
|
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366
383
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self.tick_width_spin.setSingleStep(0.05)
|
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367
|
-
self.tick_width_spin.setValue(
|
|
384
|
+
self.tick_width_spin.setValue(
|
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385
|
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self.editor.current_overrides.get("tick_width", 0.2)
|
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386
|
+
)
|
|
368
387
|
self.tick_width_spin.valueChanged.connect(self._on_value_change)
|
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369
388
|
layout.addRow("Tick Width (mm):", self.tick_width_spin)
|
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370
389
|
|
|
371
390
|
self.tick_direction_combo = self.QtWidgets.QComboBox()
|
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372
391
|
self.tick_direction_combo.addItems(["out", "in", "inout"])
|
|
373
392
|
self.tick_direction_combo.setCurrentText(
|
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374
|
-
self.editor.current_overrides.get(
|
|
393
|
+
self.editor.current_overrides.get("tick_direction", "out")
|
|
375
394
|
)
|
|
376
395
|
self.tick_direction_combo.currentTextChanged.connect(self._on_value_change)
|
|
377
396
|
layout.addRow("Tick Direction:", self.tick_direction_combo)
|
|
@@ -384,27 +403,27 @@ class QtEditorWindow:
|
|
|
384
403
|
layout = self.QtWidgets.QFormLayout(group)
|
|
385
404
|
|
|
386
405
|
self.grid_check = self.QtWidgets.QCheckBox()
|
|
387
|
-
self.grid_check.setChecked(self.editor.current_overrides.get(
|
|
406
|
+
self.grid_check.setChecked(self.editor.current_overrides.get("grid", False))
|
|
388
407
|
self.grid_check.stateChanged.connect(self._on_value_change)
|
|
389
408
|
layout.addRow("Show Grid:", self.grid_check)
|
|
390
409
|
|
|
391
410
|
self.hide_top_spine_check = self.QtWidgets.QCheckBox()
|
|
392
411
|
self.hide_top_spine_check.setChecked(
|
|
393
|
-
self.editor.current_overrides.get(
|
|
412
|
+
self.editor.current_overrides.get("hide_top_spine", True)
|
|
394
413
|
)
|
|
395
414
|
self.hide_top_spine_check.stateChanged.connect(self._on_value_change)
|
|
396
415
|
layout.addRow("Hide Top Spine:", self.hide_top_spine_check)
|
|
397
416
|
|
|
398
417
|
self.hide_right_spine_check = self.QtWidgets.QCheckBox()
|
|
399
418
|
self.hide_right_spine_check.setChecked(
|
|
400
|
-
self.editor.current_overrides.get(
|
|
419
|
+
self.editor.current_overrides.get("hide_right_spine", True)
|
|
401
420
|
)
|
|
402
421
|
self.hide_right_spine_check.stateChanged.connect(self._on_value_change)
|
|
403
422
|
layout.addRow("Hide Right Spine:", self.hide_right_spine_check)
|
|
404
423
|
|
|
405
424
|
self.transparent_check = self.QtWidgets.QCheckBox()
|
|
406
425
|
self.transparent_check.setChecked(
|
|
407
|
-
self.editor.current_overrides.get(
|
|
426
|
+
self.editor.current_overrides.get("transparent", True)
|
|
408
427
|
)
|
|
409
428
|
self.transparent_check.stateChanged.connect(self._on_value_change)
|
|
410
429
|
layout.addRow("Transparent BG:", self.transparent_check)
|
|
@@ -412,12 +431,14 @@ class QtEditorWindow:
|
|
|
412
431
|
self.axis_width_spin = self.QtWidgets.QDoubleSpinBox()
|
|
413
432
|
self.axis_width_spin.setRange(0.05, 2.0)
|
|
414
433
|
self.axis_width_spin.setSingleStep(0.05)
|
|
415
|
-
self.axis_width_spin.setValue(
|
|
434
|
+
self.axis_width_spin.setValue(
|
|
435
|
+
self.editor.current_overrides.get("axis_width", 0.2)
|
|
436
|
+
)
|
|
416
437
|
self.axis_width_spin.valueChanged.connect(self._on_value_change)
|
|
417
438
|
layout.addRow("Axis Width (mm):", self.axis_width_spin)
|
|
418
439
|
|
|
419
440
|
# Background color button
|
|
420
|
-
self.bg_color = self.editor.current_overrides.get(
|
|
441
|
+
self.bg_color = self.editor.current_overrides.get("facecolor", "#ffffff")
|
|
421
442
|
self.bg_color_btn = self.QtWidgets.QPushButton("Choose...")
|
|
422
443
|
self.bg_color_btn.clicked.connect(self._choose_bg_color)
|
|
423
444
|
layout.addRow("Background Color:", self.bg_color_btn)
|
|
@@ -431,26 +452,35 @@ class QtEditorWindow:
|
|
|
431
452
|
|
|
432
453
|
self.legend_visible_check = self.QtWidgets.QCheckBox()
|
|
433
454
|
self.legend_visible_check.setChecked(
|
|
434
|
-
self.editor.current_overrides.get(
|
|
455
|
+
self.editor.current_overrides.get("legend_visible", True)
|
|
435
456
|
)
|
|
436
457
|
self.legend_visible_check.stateChanged.connect(self._on_value_change)
|
|
437
458
|
layout.addRow("Show Legend:", self.legend_visible_check)
|
|
438
459
|
|
|
439
460
|
self.legend_frameon_check = self.QtWidgets.QCheckBox()
|
|
440
461
|
self.legend_frameon_check.setChecked(
|
|
441
|
-
self.editor.current_overrides.get(
|
|
462
|
+
self.editor.current_overrides.get("legend_frameon", False)
|
|
442
463
|
)
|
|
443
464
|
self.legend_frameon_check.stateChanged.connect(self._on_value_change)
|
|
444
465
|
layout.addRow("Show Frame:", self.legend_frameon_check)
|
|
445
466
|
|
|
446
467
|
self.legend_loc_combo = self.QtWidgets.QComboBox()
|
|
447
|
-
self.legend_loc_combo.addItems(
|
|
448
|
-
|
|
449
|
-
|
|
450
|
-
|
|
451
|
-
|
|
468
|
+
self.legend_loc_combo.addItems(
|
|
469
|
+
[
|
|
470
|
+
"best",
|
|
471
|
+
"upper right",
|
|
472
|
+
"upper left",
|
|
473
|
+
"lower right",
|
|
474
|
+
"lower left",
|
|
475
|
+
"center right",
|
|
476
|
+
"center left",
|
|
477
|
+
"upper center",
|
|
478
|
+
"lower center",
|
|
479
|
+
"center",
|
|
480
|
+
]
|
|
481
|
+
)
|
|
452
482
|
self.legend_loc_combo.setCurrentText(
|
|
453
|
-
self.editor.current_overrides.get(
|
|
483
|
+
self.editor.current_overrides.get("legend_loc", "best")
|
|
454
484
|
)
|
|
455
485
|
self.legend_loc_combo.currentTextChanged.connect(self._on_value_change)
|
|
456
486
|
layout.addRow("Position:", self.legend_loc_combo)
|
|
@@ -462,7 +492,7 @@ class QtEditorWindow:
|
|
|
462
492
|
group = self._create_group_box("Dimensions")
|
|
463
493
|
layout = self.QtWidgets.QFormLayout(group)
|
|
464
494
|
|
|
465
|
-
fig_size = self.editor.current_overrides.get(
|
|
495
|
+
fig_size = self.editor.current_overrides.get("fig_size", [3.15, 2.68])
|
|
466
496
|
|
|
467
497
|
self.fig_width_spin = self.QtWidgets.QDoubleSpinBox()
|
|
468
498
|
self.fig_width_spin.setRange(1.0, 20.0)
|
|
@@ -478,7 +508,7 @@ class QtEditorWindow:
|
|
|
478
508
|
|
|
479
509
|
self.dpi_spin = self.QtWidgets.QSpinBox()
|
|
480
510
|
self.dpi_spin.setRange(72, 600)
|
|
481
|
-
self.dpi_spin.setValue(self.editor.current_overrides.get(
|
|
511
|
+
self.dpi_spin.setValue(self.editor.current_overrides.get("dpi", 300))
|
|
482
512
|
self.dpi_spin.valueChanged.connect(self._on_value_change)
|
|
483
513
|
layout.addRow("DPI:", self.dpi_spin)
|
|
484
514
|
|
|
@@ -563,41 +593,41 @@ class QtEditorWindow:
|
|
|
563
593
|
o = self.editor.current_overrides
|
|
564
594
|
|
|
565
595
|
# Labels
|
|
566
|
-
o[
|
|
567
|
-
o[
|
|
568
|
-
o[
|
|
596
|
+
o["title"] = self.title_edit.text()
|
|
597
|
+
o["xlabel"] = self.xlabel_edit.text()
|
|
598
|
+
o["ylabel"] = self.ylabel_edit.text()
|
|
569
599
|
|
|
570
600
|
# Line style
|
|
571
|
-
o[
|
|
601
|
+
o["linewidth"] = self.linewidth_spin.value()
|
|
572
602
|
|
|
573
603
|
# Font settings
|
|
574
|
-
o[
|
|
575
|
-
o[
|
|
576
|
-
o[
|
|
577
|
-
o[
|
|
604
|
+
o["title_fontsize"] = self.title_fontsize_spin.value()
|
|
605
|
+
o["axis_fontsize"] = self.axis_fontsize_spin.value()
|
|
606
|
+
o["tick_fontsize"] = self.tick_fontsize_spin.value()
|
|
607
|
+
o["legend_fontsize"] = self.legend_fontsize_spin.value()
|
|
578
608
|
|
|
579
609
|
# Tick settings
|
|
580
|
-
o[
|
|
581
|
-
o[
|
|
582
|
-
o[
|
|
583
|
-
o[
|
|
610
|
+
o["n_ticks"] = self.n_ticks_spin.value()
|
|
611
|
+
o["tick_length"] = self.tick_length_spin.value()
|
|
612
|
+
o["tick_width"] = self.tick_width_spin.value()
|
|
613
|
+
o["tick_direction"] = self.tick_direction_combo.currentText()
|
|
584
614
|
|
|
585
615
|
# Style
|
|
586
|
-
o[
|
|
587
|
-
o[
|
|
588
|
-
o[
|
|
589
|
-
o[
|
|
590
|
-
o[
|
|
591
|
-
o[
|
|
616
|
+
o["grid"] = self.grid_check.isChecked()
|
|
617
|
+
o["hide_top_spine"] = self.hide_top_spine_check.isChecked()
|
|
618
|
+
o["hide_right_spine"] = self.hide_right_spine_check.isChecked()
|
|
619
|
+
o["transparent"] = self.transparent_check.isChecked()
|
|
620
|
+
o["axis_width"] = self.axis_width_spin.value()
|
|
621
|
+
o["facecolor"] = self.bg_color
|
|
592
622
|
|
|
593
623
|
# Legend
|
|
594
|
-
o[
|
|
595
|
-
o[
|
|
596
|
-
o[
|
|
624
|
+
o["legend_visible"] = self.legend_visible_check.isChecked()
|
|
625
|
+
o["legend_frameon"] = self.legend_frameon_check.isChecked()
|
|
626
|
+
o["legend_loc"] = self.legend_loc_combo.currentText()
|
|
597
627
|
|
|
598
628
|
# Dimensions
|
|
599
|
-
o[
|
|
600
|
-
o[
|
|
629
|
+
o["fig_size"] = [self.fig_width_spin.value(), self.fig_height_spin.value()]
|
|
630
|
+
o["dpi"] = self.dpi_spin.value()
|
|
601
631
|
|
|
602
632
|
def _apply_limits(self):
|
|
603
633
|
"""Apply axis limits."""
|
|
@@ -607,9 +637,9 @@ class QtEditorWindow:
|
|
|
607
637
|
ymax = self.ymax_spin.value()
|
|
608
638
|
|
|
609
639
|
if xmin < xmax:
|
|
610
|
-
self.editor.current_overrides[
|
|
640
|
+
self.editor.current_overrides["xlim"] = [xmin, xmax]
|
|
611
641
|
if ymin < ymax:
|
|
612
|
-
self.editor.current_overrides[
|
|
642
|
+
self.editor.current_overrides["ylim"] = [ymin, ymax]
|
|
613
643
|
|
|
614
644
|
self.editor._user_modified = True
|
|
615
645
|
self._render_figure()
|
|
@@ -619,7 +649,7 @@ class QtEditorWindow:
|
|
|
619
649
|
color = self.QtWidgets.QColorDialog.getColor()
|
|
620
650
|
if color.isValid():
|
|
621
651
|
self.bg_color = color.name()
|
|
622
|
-
self.editor.current_overrides[
|
|
652
|
+
self.editor.current_overrides["facecolor"] = self.bg_color
|
|
623
653
|
self._render_figure()
|
|
624
654
|
|
|
625
655
|
def _add_annotation(self):
|
|
@@ -631,16 +661,18 @@ class QtEditorWindow:
|
|
|
631
661
|
x = self.annot_x_spin.value()
|
|
632
662
|
y = self.annot_y_spin.value()
|
|
633
663
|
|
|
634
|
-
if
|
|
635
|
-
self.editor.current_overrides[
|
|
636
|
-
|
|
637
|
-
self.editor.current_overrides[
|
|
638
|
-
|
|
639
|
-
|
|
640
|
-
|
|
641
|
-
|
|
642
|
-
|
|
643
|
-
|
|
664
|
+
if "annotations" not in self.editor.current_overrides:
|
|
665
|
+
self.editor.current_overrides["annotations"] = []
|
|
666
|
+
|
|
667
|
+
self.editor.current_overrides["annotations"].append(
|
|
668
|
+
{
|
|
669
|
+
"type": "text",
|
|
670
|
+
"text": text,
|
|
671
|
+
"x": x,
|
|
672
|
+
"y": y,
|
|
673
|
+
"fontsize": self.editor.current_overrides.get("axis_fontsize", 7),
|
|
674
|
+
}
|
|
675
|
+
)
|
|
644
676
|
|
|
645
677
|
self.annot_text_edit.clear()
|
|
646
678
|
self._update_annotations_list()
|
|
@@ -650,7 +682,7 @@ class QtEditorWindow:
|
|
|
650
682
|
def _remove_annotation(self):
|
|
651
683
|
"""Remove selected annotation."""
|
|
652
684
|
row = self.annot_list.currentRow()
|
|
653
|
-
annotations = self.editor.current_overrides.get(
|
|
685
|
+
annotations = self.editor.current_overrides.get("annotations", [])
|
|
654
686
|
|
|
655
687
|
if row >= 0 and row < len(annotations):
|
|
656
688
|
del annotations[row]
|
|
@@ -661,11 +693,11 @@ class QtEditorWindow:
|
|
|
661
693
|
def _update_annotations_list(self):
|
|
662
694
|
"""Update the annotations list widget."""
|
|
663
695
|
self.annot_list.clear()
|
|
664
|
-
for ann in self.editor.current_overrides.get(
|
|
665
|
-
if ann.get(
|
|
666
|
-
text = ann.get(
|
|
667
|
-
x = ann.get(
|
|
668
|
-
y = ann.get(
|
|
696
|
+
for ann in self.editor.current_overrides.get("annotations", []):
|
|
697
|
+
if ann.get("type") == "text":
|
|
698
|
+
text = ann.get("text", "")[:20]
|
|
699
|
+
x = ann.get("x", 0)
|
|
700
|
+
y = ann.get("y", 0)
|
|
669
701
|
self.annot_list.addItem(f"{text} ({x:.2f}, {y:.2f})")
|
|
670
702
|
|
|
671
703
|
def _render_figure(self):
|
|
@@ -677,68 +709,74 @@ class QtEditorWindow:
|
|
|
677
709
|
mm_to_pt = 2.83465
|
|
678
710
|
|
|
679
711
|
# Background
|
|
680
|
-
if o.get(
|
|
681
|
-
self.fig.patch.set_facecolor(
|
|
682
|
-
self.ax.patch.set_facecolor(
|
|
712
|
+
if o.get("transparent", True):
|
|
713
|
+
self.fig.patch.set_facecolor("none")
|
|
714
|
+
self.ax.patch.set_facecolor("none")
|
|
683
715
|
else:
|
|
684
|
-
self.fig.patch.set_facecolor(o.get(
|
|
685
|
-
self.ax.patch.set_facecolor(o.get(
|
|
716
|
+
self.fig.patch.set_facecolor(o.get("facecolor", "#ffffff"))
|
|
717
|
+
self.ax.patch.set_facecolor(o.get("facecolor", "#ffffff"))
|
|
686
718
|
|
|
687
719
|
# Plot from CSV
|
|
688
720
|
if self.editor.csv_data is not None:
|
|
689
721
|
self._plot_from_csv(o)
|
|
690
722
|
else:
|
|
691
|
-
self.ax.text(
|
|
692
|
-
|
|
723
|
+
self.ax.text(
|
|
724
|
+
0.5,
|
|
725
|
+
0.5,
|
|
726
|
+
"No plot data available\n(CSV not found)",
|
|
727
|
+
ha="center",
|
|
728
|
+
va="center",
|
|
729
|
+
transform=self.ax.transAxes,
|
|
730
|
+
)
|
|
693
731
|
|
|
694
732
|
# Labels
|
|
695
|
-
if o.get(
|
|
696
|
-
self.ax.set_title(o[
|
|
697
|
-
if o.get(
|
|
698
|
-
self.ax.set_xlabel(o[
|
|
699
|
-
if o.get(
|
|
700
|
-
self.ax.set_ylabel(o[
|
|
733
|
+
if o.get("title"):
|
|
734
|
+
self.ax.set_title(o["title"], fontsize=o.get("title_fontsize", 8))
|
|
735
|
+
if o.get("xlabel"):
|
|
736
|
+
self.ax.set_xlabel(o["xlabel"], fontsize=o.get("axis_fontsize", 7))
|
|
737
|
+
if o.get("ylabel"):
|
|
738
|
+
self.ax.set_ylabel(o["ylabel"], fontsize=o.get("axis_fontsize", 7))
|
|
701
739
|
|
|
702
740
|
# Ticks
|
|
703
741
|
self.ax.tick_params(
|
|
704
|
-
axis=
|
|
705
|
-
labelsize=o.get(
|
|
706
|
-
length=o.get(
|
|
707
|
-
width=o.get(
|
|
708
|
-
direction=o.get(
|
|
742
|
+
axis="both",
|
|
743
|
+
labelsize=o.get("tick_fontsize", 7),
|
|
744
|
+
length=o.get("tick_length", 0.8) * mm_to_pt,
|
|
745
|
+
width=o.get("tick_width", 0.2) * mm_to_pt,
|
|
746
|
+
direction=o.get("tick_direction", "out"),
|
|
709
747
|
)
|
|
710
748
|
|
|
711
|
-
self.ax.xaxis.set_major_locator(MaxNLocator(nbins=o.get(
|
|
712
|
-
self.ax.yaxis.set_major_locator(MaxNLocator(nbins=o.get(
|
|
749
|
+
self.ax.xaxis.set_major_locator(MaxNLocator(nbins=o.get("n_ticks", 4)))
|
|
750
|
+
self.ax.yaxis.set_major_locator(MaxNLocator(nbins=o.get("n_ticks", 4)))
|
|
713
751
|
|
|
714
752
|
# Grid
|
|
715
|
-
if o.get(
|
|
716
|
-
self.ax.grid(True, linewidth=o.get(
|
|
753
|
+
if o.get("grid"):
|
|
754
|
+
self.ax.grid(True, linewidth=o.get("axis_width", 0.2) * mm_to_pt, alpha=0.3)
|
|
717
755
|
|
|
718
756
|
# Limits
|
|
719
|
-
if o.get(
|
|
720
|
-
self.ax.set_xlim(o[
|
|
721
|
-
if o.get(
|
|
722
|
-
self.ax.set_ylim(o[
|
|
757
|
+
if o.get("xlim"):
|
|
758
|
+
self.ax.set_xlim(o["xlim"])
|
|
759
|
+
if o.get("ylim"):
|
|
760
|
+
self.ax.set_ylim(o["ylim"])
|
|
723
761
|
|
|
724
762
|
# Spines
|
|
725
|
-
if o.get(
|
|
726
|
-
self.ax.spines[
|
|
727
|
-
if o.get(
|
|
728
|
-
self.ax.spines[
|
|
763
|
+
if o.get("hide_top_spine", True):
|
|
764
|
+
self.ax.spines["top"].set_visible(False)
|
|
765
|
+
if o.get("hide_right_spine", True):
|
|
766
|
+
self.ax.spines["right"].set_visible(False)
|
|
729
767
|
|
|
730
768
|
for spine in self.ax.spines.values():
|
|
731
|
-
spine.set_linewidth(o.get(
|
|
769
|
+
spine.set_linewidth(o.get("axis_width", 0.2) * mm_to_pt)
|
|
732
770
|
|
|
733
771
|
# Annotations
|
|
734
|
-
for ann in o.get(
|
|
735
|
-
if ann.get(
|
|
772
|
+
for ann in o.get("annotations", []):
|
|
773
|
+
if ann.get("type") == "text":
|
|
736
774
|
self.ax.text(
|
|
737
|
-
ann.get(
|
|
738
|
-
ann.get(
|
|
739
|
-
ann.get(
|
|
775
|
+
ann.get("x", 0.5),
|
|
776
|
+
ann.get("y", 0.5),
|
|
777
|
+
ann.get("text", ""),
|
|
740
778
|
transform=self.ax.transAxes,
|
|
741
|
-
fontsize=ann.get(
|
|
779
|
+
fontsize=ann.get("fontsize", o.get("axis_fontsize", 7)),
|
|
742
780
|
)
|
|
743
781
|
|
|
744
782
|
self.fig.tight_layout()
|
|
@@ -753,43 +791,49 @@ class QtEditorWindow:
|
|
|
753
791
|
return
|
|
754
792
|
|
|
755
793
|
df = self.editor.csv_data
|
|
756
|
-
linewidth = o.get(
|
|
757
|
-
legend_visible = o.get(
|
|
758
|
-
legend_fontsize = o.get(
|
|
759
|
-
legend_frameon = o.get(
|
|
760
|
-
legend_loc = o.get(
|
|
794
|
+
linewidth = o.get("linewidth", 1.0)
|
|
795
|
+
legend_visible = o.get("legend_visible", True)
|
|
796
|
+
legend_fontsize = o.get("legend_fontsize", 6)
|
|
797
|
+
legend_frameon = o.get("legend_frameon", False)
|
|
798
|
+
legend_loc = o.get("legend_loc", "best")
|
|
761
799
|
|
|
762
|
-
traces = o.get(
|
|
800
|
+
traces = o.get("traces", [])
|
|
763
801
|
|
|
764
802
|
if traces:
|
|
765
803
|
for trace in traces:
|
|
766
|
-
csv_cols = trace.get(
|
|
767
|
-
x_col = csv_cols.get(
|
|
768
|
-
y_col = csv_cols.get(
|
|
804
|
+
csv_cols = trace.get("csv_columns", {})
|
|
805
|
+
x_col = csv_cols.get("x")
|
|
806
|
+
y_col = csv_cols.get("y")
|
|
769
807
|
|
|
770
808
|
if x_col in df.columns and y_col in df.columns:
|
|
771
809
|
self.ax.plot(
|
|
772
810
|
df[x_col],
|
|
773
811
|
df[y_col],
|
|
774
|
-
label=trace.get(
|
|
775
|
-
color=trace.get(
|
|
776
|
-
linestyle=trace.get(
|
|
777
|
-
linewidth=trace.get(
|
|
812
|
+
label=trace.get("label", trace.get("id", "")),
|
|
813
|
+
color=trace.get("color"),
|
|
814
|
+
linestyle=trace.get("linestyle", "-"),
|
|
815
|
+
linewidth=trace.get("linewidth", linewidth),
|
|
778
816
|
)
|
|
779
817
|
|
|
780
|
-
if legend_visible and any(t.get(
|
|
781
|
-
self.ax.legend(
|
|
818
|
+
if legend_visible and any(t.get("label") for t in traces):
|
|
819
|
+
self.ax.legend(
|
|
820
|
+
fontsize=legend_fontsize, frameon=legend_frameon, loc=legend_loc
|
|
821
|
+
)
|
|
782
822
|
else:
|
|
783
823
|
cols = df.columns.tolist()
|
|
784
824
|
if len(cols) >= 2:
|
|
785
825
|
x_col = cols[0]
|
|
786
826
|
for y_col in cols[1:]:
|
|
787
827
|
try:
|
|
788
|
-
self.ax.plot(
|
|
828
|
+
self.ax.plot(
|
|
829
|
+
df[x_col], df[y_col], label=str(y_col), linewidth=linewidth
|
|
830
|
+
)
|
|
789
831
|
except Exception:
|
|
790
832
|
pass
|
|
791
833
|
if len(cols) > 2 and legend_visible:
|
|
792
|
-
self.ax.legend(
|
|
834
|
+
self.ax.legend(
|
|
835
|
+
fontsize=legend_fontsize, frameon=legend_frameon, loc=legend_loc
|
|
836
|
+
)
|
|
793
837
|
|
|
794
838
|
def _save_manual(self):
|
|
795
839
|
"""Save to .manual.json."""
|
|
@@ -798,45 +842,49 @@ class QtEditorWindow:
|
|
|
798
842
|
try:
|
|
799
843
|
self._collect_overrides()
|
|
800
844
|
manual_path = save_manual_overrides(
|
|
801
|
-
self.editor.json_path,
|
|
802
|
-
self.editor.current_overrides
|
|
845
|
+
self.editor.json_path, self.editor.current_overrides
|
|
803
846
|
)
|
|
804
847
|
self.status_bar.showMessage(f"Saved: {manual_path.name}")
|
|
805
848
|
self.QtWidgets.QMessageBox.information(
|
|
806
|
-
self.window, "Saved",
|
|
807
|
-
f"Manual overrides saved to:\n{manual_path}"
|
|
849
|
+
self.window, "Saved", f"Manual overrides saved to:\n{manual_path}"
|
|
808
850
|
)
|
|
809
851
|
except Exception as e:
|
|
810
852
|
self.QtWidgets.QMessageBox.critical(
|
|
811
|
-
self.window, "Error",
|
|
812
|
-
f"Failed to save: {e}"
|
|
853
|
+
self.window, "Error", f"Failed to save: {e}"
|
|
813
854
|
)
|
|
814
855
|
|
|
815
856
|
def _reset_overrides(self):
|
|
816
857
|
"""Reset to initial overrides."""
|
|
817
858
|
reply = self.QtWidgets.QMessageBox.question(
|
|
818
|
-
self.window,
|
|
859
|
+
self.window,
|
|
860
|
+
"Reset",
|
|
819
861
|
"Reset all changes to original values?",
|
|
820
|
-
self.QtWidgets.QMessageBox.StandardButton.Yes
|
|
821
|
-
self.QtWidgets.QMessageBox.StandardButton.No
|
|
822
|
-
if hasattr(self.QtWidgets.QMessageBox,
|
|
823
|
-
else self.QtWidgets.QMessageBox.Yes | self.QtWidgets.QMessageBox.No
|
|
862
|
+
self.QtWidgets.QMessageBox.StandardButton.Yes
|
|
863
|
+
| self.QtWidgets.QMessageBox.StandardButton.No
|
|
864
|
+
if hasattr(self.QtWidgets.QMessageBox, "StandardButton")
|
|
865
|
+
else self.QtWidgets.QMessageBox.Yes | self.QtWidgets.QMessageBox.No,
|
|
824
866
|
)
|
|
825
867
|
|
|
826
|
-
yes_val = (
|
|
827
|
-
|
|
828
|
-
|
|
868
|
+
yes_val = (
|
|
869
|
+
self.QtWidgets.QMessageBox.StandardButton.Yes
|
|
870
|
+
if hasattr(self.QtWidgets.QMessageBox, "StandardButton")
|
|
871
|
+
else self.QtWidgets.QMessageBox.Yes
|
|
872
|
+
)
|
|
829
873
|
|
|
830
874
|
if reply == yes_val:
|
|
831
|
-
self.editor.current_overrides = copy.deepcopy(
|
|
875
|
+
self.editor.current_overrides = copy.deepcopy(
|
|
876
|
+
self.editor._initial_overrides
|
|
877
|
+
)
|
|
832
878
|
self.editor._user_modified = False
|
|
833
879
|
|
|
834
880
|
# Update UI
|
|
835
|
-
self.title_edit.setText(self.editor.current_overrides.get(
|
|
836
|
-
self.xlabel_edit.setText(self.editor.current_overrides.get(
|
|
837
|
-
self.ylabel_edit.setText(self.editor.current_overrides.get(
|
|
838
|
-
self.linewidth_spin.setValue(
|
|
839
|
-
|
|
881
|
+
self.title_edit.setText(self.editor.current_overrides.get("title", ""))
|
|
882
|
+
self.xlabel_edit.setText(self.editor.current_overrides.get("xlabel", ""))
|
|
883
|
+
self.ylabel_edit.setText(self.editor.current_overrides.get("ylabel", ""))
|
|
884
|
+
self.linewidth_spin.setValue(
|
|
885
|
+
self.editor.current_overrides.get("linewidth", 1.0)
|
|
886
|
+
)
|
|
887
|
+
self.grid_check.setChecked(self.editor.current_overrides.get("grid", False))
|
|
840
888
|
|
|
841
889
|
self._update_annotations_list()
|
|
842
890
|
self._render_figure()
|
|
@@ -845,19 +893,22 @@ class QtEditorWindow:
|
|
|
845
893
|
def _export_png(self):
|
|
846
894
|
"""Export current view to PNG."""
|
|
847
895
|
filepath, _ = self.QtWidgets.QFileDialog.getSaveFileName(
|
|
848
|
-
self.window,
|
|
849
|
-
|
|
850
|
-
"
|
|
896
|
+
self.window,
|
|
897
|
+
"Export PNG",
|
|
898
|
+
str(self.editor.json_path.with_suffix(".edited.png")),
|
|
899
|
+
"PNG files (*.png);;All files (*)",
|
|
851
900
|
)
|
|
852
901
|
|
|
853
902
|
if filepath:
|
|
854
903
|
self._collect_overrides()
|
|
855
904
|
o = self.editor.current_overrides
|
|
856
|
-
dpi = o.get(
|
|
905
|
+
dpi = o.get("dpi", 300)
|
|
857
906
|
|
|
858
907
|
self.fig.savefig(
|
|
859
|
-
filepath,
|
|
860
|
-
|
|
908
|
+
filepath,
|
|
909
|
+
dpi=dpi,
|
|
910
|
+
bbox_inches="tight",
|
|
911
|
+
transparent=o.get("transparent", True),
|
|
861
912
|
)
|
|
862
913
|
self.status_bar.showMessage(f"Exported: {Path(filepath).name}")
|
|
863
914
|
|