scitex 2.5.0__py3-none-any.whl → 2.7.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1091) hide show
  1. scitex/__init__.py +19 -8
  2. scitex/__main__.py +2 -1
  3. scitex/__version__.py +1 -1
  4. scitex/_optional_deps.py +13 -20
  5. scitex/ai/__init__.py +5 -0
  6. scitex/ai/_gen_ai/_Anthropic.py +3 -1
  7. scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
  8. scitex/ai/_gen_ai/_DeepSeek.py +1 -1
  9. scitex/ai/_gen_ai/_Google.py +3 -2
  10. scitex/ai/_gen_ai/_Llama.py +4 -2
  11. scitex/ai/_gen_ai/_OpenAI.py +3 -1
  12. scitex/ai/_gen_ai/_PARAMS.py +1 -0
  13. scitex/ai/_gen_ai/_Perplexity.py +3 -1
  14. scitex/ai/_gen_ai/__init__.py +1 -0
  15. scitex/ai/_gen_ai/_format_output_func.py +3 -1
  16. scitex/ai/classification/CrossValidationExperiment.py +8 -14
  17. scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
  18. scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
  19. scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
  20. scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
  21. scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
  22. scitex/ai/classification/reporters/__init__.py +1 -1
  23. scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
  24. scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
  25. scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
  26. scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
  27. scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
  28. scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
  29. scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
  30. scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
  31. scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
  32. scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
  33. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
  34. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
  35. scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
  36. scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
  37. scitex/ai/classification/timeseries/__init__.py +2 -4
  38. scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
  39. scitex/ai/clustering/_pca.py +0 -1
  40. scitex/ai/clustering/_umap.py +1 -2
  41. scitex/ai/feature_extraction/__init__.py +10 -8
  42. scitex/ai/feature_extraction/vit.py +0 -1
  43. scitex/ai/feature_selection/feature_selection.py +3 -8
  44. scitex/ai/metrics/_calc_conf_mat.py +2 -0
  45. scitex/ai/metrics/_calc_feature_importance.py +3 -7
  46. scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
  47. scitex/ai/metrics/_calc_roc_auc.py +4 -2
  48. scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
  49. scitex/ai/metrics/_calc_silhouette_score.py +1 -3
  50. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
  51. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
  52. scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
  53. scitex/ai/optim/_optimizers.py +1 -1
  54. scitex/ai/plt/__init__.py +6 -1
  55. scitex/ai/plt/_plot_feature_importance.py +1 -3
  56. scitex/ai/plt/_plot_learning_curve.py +9 -24
  57. scitex/ai/plt/_plot_optuna_study.py +4 -3
  58. scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
  59. scitex/ai/plt/_plot_roc_curve.py +6 -8
  60. scitex/ai/plt/_stx_conf_mat.py +121 -122
  61. scitex/ai/sampling/undersample.py +3 -2
  62. scitex/ai/sklearn/__init__.py +2 -2
  63. scitex/ai/training/_LearningCurveLogger.py +23 -10
  64. scitex/ai/utils/_check_params.py +0 -1
  65. scitex/benchmark/__init__.py +15 -25
  66. scitex/benchmark/benchmark.py +124 -117
  67. scitex/benchmark/monitor.py +117 -107
  68. scitex/benchmark/profiler.py +61 -58
  69. scitex/bridge/__init__.py +110 -0
  70. scitex/bridge/_helpers.py +149 -0
  71. scitex/bridge/_plt_vis.py +529 -0
  72. scitex/bridge/_protocol.py +283 -0
  73. scitex/bridge/_stats_plt.py +261 -0
  74. scitex/bridge/_stats_vis.py +265 -0
  75. scitex/browser/__init__.py +0 -2
  76. scitex/browser/auth/__init__.py +0 -0
  77. scitex/browser/auth/google.py +16 -11
  78. scitex/browser/automation/CookieHandler.py +2 -3
  79. scitex/browser/collaboration/__init__.py +3 -0
  80. scitex/browser/collaboration/auth_helpers.py +3 -1
  81. scitex/browser/collaboration/collaborative_agent.py +2 -0
  82. scitex/browser/collaboration/interactive_panel.py +2 -2
  83. scitex/browser/collaboration/shared_session.py +20 -11
  84. scitex/browser/collaboration/standard_interactions.py +1 -0
  85. scitex/browser/core/BrowserMixin.py +12 -30
  86. scitex/browser/core/ChromeProfileManager.py +9 -24
  87. scitex/browser/debugging/_browser_logger.py +15 -25
  88. scitex/browser/debugging/_failure_capture.py +9 -2
  89. scitex/browser/debugging/_highlight_element.py +15 -6
  90. scitex/browser/debugging/_show_grid.py +5 -6
  91. scitex/browser/debugging/_sync_session.py +4 -3
  92. scitex/browser/debugging/_test_monitor.py +14 -5
  93. scitex/browser/debugging/_visual_cursor.py +46 -35
  94. scitex/browser/interaction/click_center.py +4 -3
  95. scitex/browser/interaction/click_with_fallbacks.py +7 -10
  96. scitex/browser/interaction/close_popups.py +79 -66
  97. scitex/browser/interaction/fill_with_fallbacks.py +8 -8
  98. scitex/browser/pdf/__init__.py +3 -1
  99. scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
  100. scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
  101. scitex/browser/remote/CaptchaHandler.py +109 -96
  102. scitex/browser/remote/ZenRowsAPIClient.py +91 -97
  103. scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
  104. scitex/browser/stealth/HumanBehavior.py +4 -9
  105. scitex/browser/stealth/StealthManager.py +11 -26
  106. scitex/capture/__init__.py +17 -17
  107. scitex/capture/__main__.py +2 -3
  108. scitex/capture/capture.py +23 -51
  109. scitex/capture/cli.py +14 -39
  110. scitex/capture/gif.py +5 -9
  111. scitex/capture/mcp_server.py +7 -20
  112. scitex/capture/session.py +4 -3
  113. scitex/capture/utils.py +18 -53
  114. scitex/cli/__init__.py +1 -1
  115. scitex/cli/cloud.py +158 -116
  116. scitex/cli/config.py +224 -0
  117. scitex/cli/main.py +41 -40
  118. scitex/cli/scholar.py +60 -27
  119. scitex/cli/security.py +14 -20
  120. scitex/cli/web.py +87 -90
  121. scitex/cli/writer.py +51 -45
  122. scitex/cloud/__init__.py +14 -11
  123. scitex/cloud/_matplotlib_hook.py +6 -6
  124. scitex/config/README.md +313 -0
  125. scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
  126. scitex/config/_ScitexConfig.py +319 -0
  127. scitex/config/__init__.py +41 -9
  128. scitex/config/_paths.py +325 -0
  129. scitex/config/default.yaml +81 -0
  130. scitex/context/_suppress_output.py +2 -3
  131. scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
  132. scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
  133. scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
  134. scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
  135. scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
  136. scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
  137. scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
  138. scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
  139. scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
  140. scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
  141. scitex/db/_BaseMixins/__init__.py +1 -1
  142. scitex/db/__init__.py +9 -1
  143. scitex/db/__main__.py +8 -21
  144. scitex/db/_check_health.py +15 -31
  145. scitex/db/_delete_duplicates.py +7 -4
  146. scitex/db/_inspect.py +22 -38
  147. scitex/db/_inspect_optimized.py +89 -85
  148. scitex/db/_postgresql/_PostgreSQL.py +0 -1
  149. scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
  150. scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
  151. scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
  152. scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
  153. scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
  154. scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
  155. scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
  156. scitex/db/_postgresql/__init__.py +1 -1
  157. scitex/db/_sqlite3/_SQLite3.py +2 -4
  158. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
  159. scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
  160. scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
  161. scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
  162. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
  163. scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
  164. scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
  165. scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
  166. scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
  167. scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
  168. scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
  169. scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
  170. scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
  171. scitex/db/_sqlite3/__init__.py +1 -1
  172. scitex/db/_sqlite3/_delete_duplicates.py +13 -11
  173. scitex/decorators/__init__.py +29 -4
  174. scitex/decorators/_auto_order.py +43 -43
  175. scitex/decorators/_batch_fn.py +12 -6
  176. scitex/decorators/_cache_disk.py +8 -9
  177. scitex/decorators/_cache_disk_async.py +8 -7
  178. scitex/decorators/_combined.py +19 -13
  179. scitex/decorators/_converters.py +16 -3
  180. scitex/decorators/_deprecated.py +32 -22
  181. scitex/decorators/_numpy_fn.py +18 -4
  182. scitex/decorators/_pandas_fn.py +17 -5
  183. scitex/decorators/_signal_fn.py +17 -3
  184. scitex/decorators/_torch_fn.py +32 -15
  185. scitex/decorators/_xarray_fn.py +23 -9
  186. scitex/dev/_analyze_code_flow.py +0 -2
  187. scitex/dict/_DotDict.py +15 -19
  188. scitex/dict/_flatten.py +1 -0
  189. scitex/dict/_listed_dict.py +1 -0
  190. scitex/dict/_pop_keys.py +1 -0
  191. scitex/dict/_replace.py +1 -0
  192. scitex/dict/_safe_merge.py +1 -0
  193. scitex/dict/_to_str.py +2 -3
  194. scitex/dsp/__init__.py +13 -4
  195. scitex/dsp/_crop.py +3 -1
  196. scitex/dsp/_detect_ripples.py +3 -1
  197. scitex/dsp/_modulation_index.py +3 -1
  198. scitex/dsp/_time.py +3 -1
  199. scitex/dsp/_wavelet.py +0 -1
  200. scitex/dsp/example.py +0 -5
  201. scitex/dsp/filt.py +4 -0
  202. scitex/dsp/utils/__init__.py +4 -1
  203. scitex/dsp/utils/pac.py +3 -3
  204. scitex/dt/_normalize_timestamp.py +4 -1
  205. scitex/errors.py +3 -6
  206. scitex/etc/__init__.py +1 -1
  207. scitex/gen/_DimHandler.py +6 -6
  208. scitex/gen/__init__.py +5 -1
  209. scitex/gen/_deprecated_close.py +1 -0
  210. scitex/gen/_deprecated_start.py +5 -3
  211. scitex/gen/_detect_environment.py +44 -41
  212. scitex/gen/_detect_notebook_path.py +51 -47
  213. scitex/gen/_embed.py +1 -1
  214. scitex/gen/_get_notebook_path.py +81 -62
  215. scitex/gen/_inspect_module.py +0 -1
  216. scitex/gen/_norm.py +16 -7
  217. scitex/gen/_norm_cache.py +78 -65
  218. scitex/gen/_print_config.py +0 -3
  219. scitex/gen/_src.py +2 -3
  220. scitex/gen/_title_case.py +3 -2
  221. scitex/gen/_to_even.py +8 -8
  222. scitex/gen/_transpose.py +3 -3
  223. scitex/gen/misc.py +0 -3
  224. scitex/gists/_SigMacro_processFigure_S.py +2 -2
  225. scitex/gists/_SigMacro_toBlue.py +2 -2
  226. scitex/gists/__init__.py +4 -1
  227. scitex/git/_branch.py +19 -11
  228. scitex/git/_clone.py +23 -15
  229. scitex/git/_commit.py +10 -12
  230. scitex/git/_init.py +15 -38
  231. scitex/git/_remote.py +9 -3
  232. scitex/git/_result.py +3 -0
  233. scitex/git/_retry.py +2 -5
  234. scitex/git/_types.py +4 -0
  235. scitex/git/_validation.py +8 -8
  236. scitex/git/_workflow.py +4 -4
  237. scitex/io/__init__.py +2 -1
  238. scitex/io/_glob.py +2 -2
  239. scitex/io/_json2md.py +3 -3
  240. scitex/io/_load.py +6 -8
  241. scitex/io/_load_cache.py +71 -71
  242. scitex/io/_load_configs.py +2 -3
  243. scitex/io/_load_modules/_H5Explorer.py +6 -12
  244. scitex/io/_load_modules/_ZarrExplorer.py +3 -3
  245. scitex/io/_load_modules/_bibtex.py +62 -63
  246. scitex/io/_load_modules/_canvas.py +4 -9
  247. scitex/io/_load_modules/_catboost.py +7 -2
  248. scitex/io/_load_modules/_hdf5.py +2 -0
  249. scitex/io/_load_modules/_image.py +5 -1
  250. scitex/io/_load_modules/_matlab.py +3 -1
  251. scitex/io/_load_modules/_optuna.py +0 -1
  252. scitex/io/_load_modules/_pdf.py +38 -29
  253. scitex/io/_load_modules/_sqlite3.py +1 -0
  254. scitex/io/_load_modules/_txt.py +2 -0
  255. scitex/io/_load_modules/_xml.py +9 -9
  256. scitex/io/_load_modules/_zarr.py +12 -10
  257. scitex/io/_metadata.py +76 -37
  258. scitex/io/_qr_utils.py +18 -13
  259. scitex/io/_save.py +220 -63
  260. scitex/io/_save_modules/__init__.py +7 -2
  261. scitex/io/_save_modules/_bibtex.py +66 -61
  262. scitex/io/_save_modules/_canvas.py +5 -6
  263. scitex/io/_save_modules/_catboost.py +2 -2
  264. scitex/io/_save_modules/_csv.py +4 -4
  265. scitex/io/_save_modules/_excel.py +5 -9
  266. scitex/io/_save_modules/_hdf5.py +9 -21
  267. scitex/io/_save_modules/_html.py +5 -5
  268. scitex/io/_save_modules/_image.py +105 -8
  269. scitex/io/_save_modules/_joblib.py +2 -2
  270. scitex/io/_save_modules/_json.py +51 -6
  271. scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
  272. scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
  273. scitex/io/_save_modules/_matlab.py +2 -2
  274. scitex/io/_save_modules/_numpy.py +6 -8
  275. scitex/io/_save_modules/_pickle.py +4 -4
  276. scitex/io/_save_modules/_plotly.py +3 -3
  277. scitex/io/_save_modules/_tex.py +23 -25
  278. scitex/io/_save_modules/_text.py +2 -2
  279. scitex/io/_save_modules/_yaml.py +9 -9
  280. scitex/io/_save_modules/_zarr.py +15 -15
  281. scitex/io/utils/__init__.py +2 -1
  282. scitex/io/utils/h5_to_zarr.py +173 -155
  283. scitex/linalg/__init__.py +1 -1
  284. scitex/linalg/_geometric_median.py +4 -3
  285. scitex/logging/_Tee.py +5 -7
  286. scitex/logging/__init__.py +18 -19
  287. scitex/logging/_config.py +4 -1
  288. scitex/logging/_context.py +6 -5
  289. scitex/logging/_formatters.py +2 -3
  290. scitex/logging/_handlers.py +19 -20
  291. scitex/logging/_levels.py +9 -17
  292. scitex/logging/_logger.py +74 -15
  293. scitex/logging/_print_capture.py +17 -17
  294. scitex/nn/_BNet.py +1 -3
  295. scitex/nn/_Filters.py +6 -2
  296. scitex/nn/_ModulationIndex.py +3 -1
  297. scitex/nn/_PAC.py +3 -2
  298. scitex/nn/_PSD.py +0 -1
  299. scitex/nn/__init__.py +16 -3
  300. scitex/path/_clean.py +10 -8
  301. scitex/path/_find.py +1 -1
  302. scitex/path/_get_spath.py +1 -2
  303. scitex/path/_mk_spath.py +1 -1
  304. scitex/path/_symlink.py +5 -10
  305. scitex/pd/__init__.py +4 -1
  306. scitex/pd/_force_df.py +24 -24
  307. scitex/pd/_get_unique.py +1 -0
  308. scitex/pd/_merge_columns.py +1 -1
  309. scitex/pd/_round.py +11 -7
  310. scitex/pd/_to_xy.py +0 -1
  311. scitex/plt/REQUESTS.md +191 -0
  312. scitex/plt/__init__.py +185 -87
  313. scitex/plt/_subplots/_AxesWrapper.py +22 -6
  314. scitex/plt/_subplots/_AxisWrapper.py +100 -39
  315. scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
  316. scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
  317. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
  318. scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
  319. scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
  320. scitex/plt/_subplots/_FigWrapper.py +93 -60
  321. scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
  322. scitex/plt/_subplots/__init__.py +10 -0
  323. scitex/plt/_subplots/_export_as_csv.py +89 -47
  324. scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
  325. scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
  326. scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
  327. scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
  328. scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
  329. scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
  330. scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
  331. scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
  332. scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
  333. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
  334. scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
  335. scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
  336. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
  337. scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
  338. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
  339. scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
  340. scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
  341. scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
  342. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +85 -46
  343. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
  344. scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
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  891. scitex/scholar/url_finder/translators/individual/sciencedirect.py +36 -17
  892. scitex/scholar/url_finder/translators/individual/semantics_visual_library.py +3 -1
  893. scitex/scholar/url_finder/translators/individual/silverchair.py +70 -52
  894. scitex/scholar/url_finder/translators/individual/sora.py +3 -1
  895. scitex/scholar/url_finder/translators/individual/springer.py +15 -11
  896. scitex/scholar/url_finder/translators/individual/ssrn.py +3 -3
  897. scitex/scholar/url_finder/translators/individual/stanford_encyclopedia_of_philosophy.py +3 -1
  898. scitex/scholar/url_finder/translators/individual/superlib.py +3 -1
  899. scitex/scholar/url_finder/translators/individual/treesearch.py +3 -1
  900. scitex/scholar/url_finder/translators/individual/university_of_chicago_press_books.py +3 -1
  901. scitex/scholar/url_finder/translators/individual/vlex.py +3 -1
  902. scitex/scholar/url_finder/translators/individual/web_of_science.py +3 -1
  903. scitex/scholar/url_finder/translators/individual/web_of_science_nextgen.py +3 -1
  904. scitex/scholar/url_finder/translators/individual/wiley.py +31 -25
  905. scitex/scholar/url_finder/translators/individual/wilson_center_digital_archive.py +3 -1
  906. scitex/scholar/utils/bibtex/_parse_bibtex.py +3 -3
  907. scitex/scholar/utils/cleanup/_cleanup_scholar_processes.py +5 -9
  908. scitex/scholar/utils/text/_TextNormalizer.py +249 -176
  909. scitex/scholar/utils/validation/DOIValidator.py +31 -28
  910. scitex/scholar/utils/validation/__init__.py +0 -0
  911. scitex/scholar/utils/validation/validate_library_dois.py +61 -57
  912. scitex/scholar/zotero/__init__.py +1 -1
  913. scitex/security/cli.py +7 -20
  914. scitex/security/github.py +45 -32
  915. scitex/session/__init__.py +8 -9
  916. scitex/session/_decorator.py +49 -42
  917. scitex/session/_lifecycle.py +39 -39
  918. scitex/session/_manager.py +24 -20
  919. scitex/sh/__init__.py +4 -3
  920. scitex/sh/_execute.py +10 -7
  921. scitex/sh/_security.py +3 -3
  922. scitex/sh/_types.py +2 -3
  923. scitex/stats/__init__.py +57 -6
  924. scitex/stats/_schema.py +42 -569
  925. scitex/stats/auto/__init__.py +188 -0
  926. scitex/stats/auto/_context.py +331 -0
  927. scitex/stats/auto/_formatting.py +679 -0
  928. scitex/stats/auto/_rules.py +901 -0
  929. scitex/stats/auto/_selector.py +554 -0
  930. scitex/stats/auto/_styles.py +721 -0
  931. scitex/stats/correct/__init__.py +4 -4
  932. scitex/stats/correct/_correct_bonferroni.py +43 -34
  933. scitex/stats/correct/_correct_fdr.py +14 -40
  934. scitex/stats/correct/_correct_fdr_.py +39 -46
  935. scitex/stats/correct/_correct_holm.py +14 -32
  936. scitex/stats/correct/_correct_sidak.py +36 -21
  937. scitex/stats/descriptive/_circular.py +20 -21
  938. scitex/stats/descriptive/_describe.py +19 -5
  939. scitex/stats/descriptive/_nan.py +5 -7
  940. scitex/stats/descriptive/_real.py +4 -3
  941. scitex/stats/effect_sizes/__init__.py +10 -11
  942. scitex/stats/effect_sizes/_cliffs_delta.py +35 -32
  943. scitex/stats/effect_sizes/_cohens_d.py +30 -31
  944. scitex/stats/effect_sizes/_epsilon_squared.py +19 -22
  945. scitex/stats/effect_sizes/_eta_squared.py +23 -27
  946. scitex/stats/effect_sizes/_prob_superiority.py +18 -21
  947. scitex/stats/posthoc/__init__.py +3 -3
  948. scitex/stats/posthoc/_dunnett.py +75 -55
  949. scitex/stats/posthoc/_games_howell.py +61 -43
  950. scitex/stats/posthoc/_tukey_hsd.py +42 -34
  951. scitex/stats/power/__init__.py +2 -2
  952. scitex/stats/power/_power.py +56 -56
  953. scitex/stats/tests/__init__.py +1 -1
  954. scitex/stats/tests/correlation/__init__.py +1 -1
  955. scitex/stats/tests/correlation/_test_pearson.py +28 -38
  956. scitex/stats/utils/__init__.py +14 -17
  957. scitex/stats/utils/_effect_size.py +85 -78
  958. scitex/stats/utils/_formatters.py +49 -43
  959. scitex/stats/utils/_normalizers.py +7 -14
  960. scitex/stats/utils/_power.py +56 -56
  961. scitex/str/__init__.py +1 -0
  962. scitex/str/_clean_path.py +3 -3
  963. scitex/str/_factor_out_digits.py +86 -58
  964. scitex/str/_format_plot_text.py +180 -111
  965. scitex/str/_latex.py +19 -19
  966. scitex/str/_latex_fallback.py +9 -10
  967. scitex/str/_parse.py +3 -6
  968. scitex/str/_print_debug.py +13 -13
  969. scitex/str/_printc.py +2 -0
  970. scitex/str/_search.py +3 -3
  971. scitex/template/.legacy/_clone_project.py +9 -13
  972. scitex/template/__init__.py +10 -2
  973. scitex/template/_clone_project.py +7 -2
  974. scitex/template/_copy.py +1 -0
  975. scitex/template/_customize.py +3 -6
  976. scitex/template/_git_strategy.py +2 -3
  977. scitex/template/_rename.py +1 -0
  978. scitex/template/clone_pip_project.py +6 -7
  979. scitex/template/clone_research.py +7 -10
  980. scitex/template/clone_singularity.py +6 -7
  981. scitex/template/clone_writer_directory.py +6 -7
  982. scitex/tex/_preview.py +26 -11
  983. scitex/tex/_to_vec.py +10 -7
  984. scitex/torch/__init__.py +11 -1
  985. scitex/types/_ArrayLike.py +2 -0
  986. scitex/types/_is_listed_X.py +3 -3
  987. scitex/units.py +110 -77
  988. scitex/utils/_compress_hdf5.py +3 -3
  989. scitex/utils/_email.py +8 -4
  990. scitex/utils/_notify.py +14 -8
  991. scitex/utils/_search.py +6 -6
  992. scitex/utils/_verify_scitex_format.py +17 -42
  993. scitex/utils/_verify_scitex_format_v01.py +12 -34
  994. scitex/utils/template.py +4 -3
  995. scitex/vis/__init__.py +0 -0
  996. scitex/vis/backend/__init__.py +3 -3
  997. scitex/vis/backend/{export.py → _export.py} +1 -1
  998. scitex/vis/backend/{parser.py → _parser.py} +1 -3
  999. scitex/vis/backend/{render.py → _render.py} +1 -1
  1000. scitex/vis/canvas.py +15 -3
  1001. scitex/vis/editor/__init__.py +0 -0
  1002. scitex/vis/editor/_dearpygui_editor.py +450 -304
  1003. scitex/vis/editor/_defaults.py +114 -123
  1004. scitex/vis/editor/_edit.py +38 -26
  1005. scitex/vis/editor/_flask_editor.py +8 -8
  1006. scitex/vis/editor/_mpl_editor.py +63 -48
  1007. scitex/vis/editor/_qt_editor.py +210 -159
  1008. scitex/vis/editor/_tkinter_editor.py +146 -89
  1009. scitex/vis/editor/flask_editor/__init__.py +10 -10
  1010. scitex/vis/editor/flask_editor/_bbox.py +529 -0
  1011. scitex/vis/editor/flask_editor/{core.py → _core.py} +45 -29
  1012. scitex/vis/editor/flask_editor/_plotter.py +567 -0
  1013. scitex/vis/editor/flask_editor/_renderer.py +393 -0
  1014. scitex/vis/editor/flask_editor/{utils.py → _utils.py} +13 -14
  1015. scitex/vis/editor/flask_editor/templates/__init__.py +5 -5
  1016. scitex/vis/editor/flask_editor/templates/{html.py → _html.py} +234 -16
  1017. scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
  1018. scitex/vis/editor/flask_editor/templates/{styles.py → _styles.py} +192 -2
  1019. scitex/vis/io/__init__.py +5 -5
  1020. scitex/vis/io/{canvas.py → _canvas.py} +8 -4
  1021. scitex/vis/io/{data.py → _data.py} +13 -9
  1022. scitex/vis/io/{directory.py → _directory.py} +7 -4
  1023. scitex/vis/io/{export.py → _export.py} +15 -12
  1024. scitex/vis/io/{load.py → _load.py} +1 -1
  1025. scitex/vis/io/{panel.py → _panel.py} +21 -13
  1026. scitex/vis/io/{save.py → _save.py} +0 -0
  1027. scitex/vis/model/__init__.py +7 -7
  1028. scitex/vis/model/{annotations.py → _annotations.py} +2 -4
  1029. scitex/vis/model/{axes.py → _axes.py} +1 -1
  1030. scitex/vis/model/{figure.py → _figure.py} +0 -0
  1031. scitex/vis/model/{guides.py → _guides.py} +1 -1
  1032. scitex/vis/model/{plot.py → _plot.py} +2 -4
  1033. scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
  1034. scitex/vis/model/{styles.py → _styles.py} +0 -0
  1035. scitex/vis/utils/__init__.py +2 -2
  1036. scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
  1037. scitex/vis/utils/{validate.py → _validate.py} +3 -9
  1038. scitex/web/__init__.py +7 -1
  1039. scitex/web/_scraping.py +54 -38
  1040. scitex/web/_search_pubmed.py +30 -14
  1041. scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
  1042. scitex/writer/.legacy/_compile.py +18 -28
  1043. scitex/writer/Writer.py +8 -21
  1044. scitex/writer/__init__.py +11 -11
  1045. scitex/writer/_clone_writer_project.py +2 -6
  1046. scitex/writer/_compile/__init__.py +1 -0
  1047. scitex/writer/_compile/_parser.py +1 -0
  1048. scitex/writer/_compile/_runner.py +35 -38
  1049. scitex/writer/_compile/_validator.py +1 -0
  1050. scitex/writer/_compile/manuscript.py +1 -0
  1051. scitex/writer/_compile/revision.py +1 -0
  1052. scitex/writer/_compile/supplementary.py +1 -0
  1053. scitex/writer/_compile_async.py +5 -12
  1054. scitex/writer/_project/__init__.py +1 -0
  1055. scitex/writer/_project/_create.py +10 -25
  1056. scitex/writer/_project/_trees.py +4 -9
  1057. scitex/writer/_project/_validate.py +2 -3
  1058. scitex/writer/_validate_tree_structures.py +7 -18
  1059. scitex/writer/dataclasses/__init__.py +8 -10
  1060. scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
  1061. scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
  1062. scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
  1063. scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
  1064. scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
  1065. scitex/writer/dataclasses/core/_Document.py +2 -3
  1066. scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
  1067. scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
  1068. scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
  1069. scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
  1070. scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
  1071. scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
  1072. scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
  1073. scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
  1074. scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
  1075. scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
  1076. scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
  1077. scitex/writer/utils/.legacy_git_retry.py +3 -8
  1078. scitex/writer/utils/_parse_latex_logs.py +2 -3
  1079. scitex/writer/utils/_parse_script_args.py +20 -23
  1080. scitex/writer/utils/_watch.py +5 -5
  1081. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/METADATA +4 -10
  1082. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/RECORD +1071 -975
  1083. scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
  1084. scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
  1085. scitex/vis/editor/flask_editor/bbox.py +0 -216
  1086. scitex/vis/editor/flask_editor/plotter.py +0 -130
  1087. scitex/vis/editor/flask_editor/renderer.py +0 -184
  1088. scitex/vis/editor/flask_editor/templates/scripts.py +0 -614
  1089. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
  1090. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
  1091. {scitex-2.5.0.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
@@ -84,12 +84,14 @@ class SAGEJournalsTranslator(BaseTranslator):
84
84
  try:
85
85
  # Method 1: Extract DOI from meta tag (JavaScript line 83)
86
86
  # JavaScript: var doi = ZU.xpathText(doc, '//meta[@name="dc.Identifier" and @scheme="doi"]/@content');
87
- doi = await page.locator('meta[name="dc.Identifier"][scheme="doi"]').first.get_attribute('content', timeout=3000)
87
+ doi = await page.locator(
88
+ 'meta[name="dc.Identifier"][scheme="doi"]'
89
+ ).first.get_attribute("content", timeout=3000)
88
90
 
89
91
  if doi:
90
92
  # Construct PDF URL (JavaScript line 88)
91
93
  # JavaScript: let pdfurl = "//" + doc.location.host + "/doi/pdf/" + doi;
92
- base_url = await page.evaluate('window.location.origin')
94
+ base_url = await page.evaluate("window.location.origin")
93
95
  pdf_url = f"{base_url}/doi/pdf/{doi}"
94
96
  pdf_urls.append(pdf_url)
95
97
  return pdf_urls
@@ -101,11 +103,11 @@ class SAGEJournalsTranslator(BaseTranslator):
101
103
  # JavaScript: doi = url.match(/10\.[^?#]+/)[0];
102
104
  try:
103
105
  current_url = page.url
104
- doi_match = re.search(r'(10\.[^?#]+)', current_url)
106
+ doi_match = re.search(r"(10\.[^?#]+)", current_url)
105
107
 
106
108
  if doi_match:
107
109
  doi = doi_match.group(1)
108
- base_url = await page.evaluate('window.location.origin')
110
+ base_url = await page.evaluate("window.location.origin")
109
111
  pdf_url = f"{base_url}/doi/pdf/{doi}"
110
112
  pdf_urls.append(pdf_url)
111
113
  return pdf_urls
@@ -118,25 +120,27 @@ class SAGEJournalsTranslator(BaseTranslator):
118
120
  try:
119
121
  # Common selectors for SAGE PDF download links
120
122
  selectors = [
121
- 'a.show-pdf',
123
+ "a.show-pdf",
122
124
  'a[href*="/doi/pdf/"]',
123
- 'a.pdf-download',
125
+ "a.pdf-download",
124
126
  'a[title*="PDF"]',
125
127
  '.epub-section__access-options a[href*="pdf"]',
126
- 'a.download-pdf-link'
128
+ "a.download-pdf-link",
127
129
  ]
128
130
 
129
131
  for selector in selectors:
130
132
  try:
131
- pdf_link = await page.locator(selector).first.get_attribute('href', timeout=1000)
133
+ pdf_link = await page.locator(selector).first.get_attribute(
134
+ "href", timeout=1000
135
+ )
132
136
  if pdf_link:
133
137
  # Make absolute URL if needed
134
- if pdf_link.startswith('/'):
135
- base_url = await page.evaluate('window.location.origin')
138
+ if pdf_link.startswith("/"):
139
+ base_url = await page.evaluate("window.location.origin")
136
140
  pdf_link = f"{base_url}{pdf_link}"
137
- elif not pdf_link.startswith('http'):
138
- base_url = await page.evaluate('window.location.href')
139
- base_url = re.sub(r'/[^/]*$', '', base_url)
141
+ elif not pdf_link.startswith("http"):
142
+ base_url = await page.evaluate("window.location.href")
143
+ base_url = re.sub(r"/[^/]*$", "", base_url)
140
144
  pdf_link = f"{base_url}/{pdf_link}"
141
145
 
142
146
  pdf_urls.append(pdf_link)
@@ -151,7 +155,7 @@ class SAGEJournalsTranslator(BaseTranslator):
151
155
  # If URL contains /doi/pdf/, it's already a PDF URL
152
156
  try:
153
157
  current_url = page.url
154
- if '/doi/pdf/' in current_url:
158
+ if "/doi/pdf/" in current_url:
155
159
  pdf_urls.append(current_url)
156
160
  return pdf_urls
157
161
  except Exception:
@@ -161,11 +165,15 @@ class SAGEJournalsTranslator(BaseTranslator):
161
165
  # Convert /doi/abs/ or /doi/full/ to /doi/pdf/
162
166
  try:
163
167
  current_url = page.url
164
- if '/doi/abs/' in current_url or '/doi/full/' in current_url or re.search(r'/doi/10\.', current_url):
168
+ if (
169
+ "/doi/abs/" in current_url
170
+ or "/doi/full/" in current_url
171
+ or re.search(r"/doi/10\.", current_url)
172
+ ):
165
173
  # Replace view type with pdf
166
- pdf_url = re.sub(r'/doi/(abs|full)/', '/doi/pdf/', current_url)
174
+ pdf_url = re.sub(r"/doi/(abs|full)/", "/doi/pdf/", current_url)
167
175
  # If URL is /doi/10.xxx without view prefix, insert pdf
168
- pdf_url = re.sub(r'/doi/(10\.)', r'/doi/pdf/\1', pdf_url)
176
+ pdf_url = re.sub(r"/doi/(10\.)", r"/doi/pdf/\1", pdf_url)
169
177
 
170
178
  pdf_urls.append(pdf_url)
171
179
  return pdf_urls
@@ -32,32 +32,40 @@ class ScienceDirectTranslator(BaseTranslator):
32
32
  """
33
33
  # JS lines 68-72: Check if PDF is not available
34
34
  try:
35
- if await page.locator('.accessContent').first.is_visible(timeout=1000):
35
+ if await page.locator(".accessContent").first.is_visible(timeout=1000):
36
36
  return []
37
37
  except:
38
38
  pass
39
39
  try:
40
- if await page.locator('.access-options-link-text').first.is_visible(timeout=1000):
40
+ if await page.locator(".access-options-link-text").first.is_visible(
41
+ timeout=1000
42
+ ):
41
43
  return []
42
44
  except:
43
45
  pass
44
46
  try:
45
- if await page.locator('#check-access-popover').first.is_visible(timeout=1000):
47
+ if await page.locator("#check-access-popover").first.is_visible(
48
+ timeout=1000
49
+ ):
46
50
  return []
47
51
  except:
48
52
  pass
49
53
 
50
54
  # Method 1: Direct PDF link (JS lines 75-76)
51
55
  try:
52
- pdf_url = await page.locator('#pdfLink').first.get_attribute('href', timeout=2000)
53
- if pdf_url and pdf_url != '#':
56
+ pdf_url = await page.locator("#pdfLink").first.get_attribute(
57
+ "href", timeout=2000
58
+ )
59
+ if pdf_url and pdf_url != "#":
54
60
  return [pdf_url]
55
61
  except:
56
62
  pass
57
63
 
58
64
  # Method 1b: Meta tag citation_pdf_url (JS line 76)
59
65
  try:
60
- pdf_url = await page.locator('[name="citation_pdf_url"]').first.get_attribute('content', timeout=2000)
66
+ pdf_url = await page.locator(
67
+ '[name="citation_pdf_url"]'
68
+ ).first.get_attribute("content", timeout=2000)
61
69
  if pdf_url:
62
70
  return [pdf_url]
63
71
  except:
@@ -65,7 +73,9 @@ class ScienceDirectTranslator(BaseTranslator):
65
73
 
66
74
  # Method 2: Embedded PDF object (JS lines 83-92)
67
75
  try:
68
- intermediate_url = await page.locator('.PdfEmbed > object').first.get_attribute('data', timeout=2000)
76
+ intermediate_url = await page.locator(
77
+ ".PdfEmbed > object"
78
+ ).first.get_attribute("data", timeout=2000)
69
79
  if intermediate_url:
70
80
  return [intermediate_url]
71
81
  except:
@@ -73,24 +83,31 @@ class ScienceDirectTranslator(BaseTranslator):
73
83
 
74
84
  # Method 3: JSON metadata (JS lines 123-148)
75
85
  try:
76
- json_script = await page.locator('script[type="application/json"]').first.text_content(timeout=2000)
86
+ json_script = await page.locator(
87
+ 'script[type="application/json"]'
88
+ ).first.text_content(timeout=2000)
77
89
  if json_script:
78
90
  import json
91
+
79
92
  data = json.loads(json_script)
80
93
 
81
94
  # Try to construct PDF URL from JSON
82
- url_metadata = data.get('article', {}).get('pdfDownload', {}).get('urlMetadata', {})
83
- path = url_metadata.get('path')
84
- pdf_extension = url_metadata.get('pdfExtension')
85
- pii = url_metadata.get('pii')
86
- query_params = url_metadata.get('queryParams', {})
87
- md5 = query_params.get('md5')
88
- pid = query_params.get('pid')
95
+ url_metadata = (
96
+ data.get("article", {})
97
+ .get("pdfDownload", {})
98
+ .get("urlMetadata", {})
99
+ )
100
+ path = url_metadata.get("path")
101
+ pdf_extension = url_metadata.get("pdfExtension")
102
+ pii = url_metadata.get("pii")
103
+ query_params = url_metadata.get("queryParams", {})
104
+ md5 = query_params.get("md5")
105
+ pid = query_params.get("pid")
89
106
 
90
107
  if all([path, pdf_extension, pii, md5, pid]):
91
108
  pdf_url = f"/{path}/{pii}{pdf_extension}?md5={md5}&pid={pid}"
92
109
  # Make absolute URL
93
- base_url = await page.evaluate('window.location.origin')
110
+ base_url = await page.evaluate("window.location.origin")
94
111
  pdf_url = f"{base_url}{pdf_url}"
95
112
  return [pdf_url]
96
113
  except:
@@ -98,7 +115,9 @@ class ScienceDirectTranslator(BaseTranslator):
98
115
 
99
116
  # Method 4: Canonical link + suffix (JS lines 154-159)
100
117
  try:
101
- canonical_url = await page.locator('link[rel="canonical"]').first.get_attribute('href', timeout=2000)
118
+ canonical_url = await page.locator(
119
+ 'link[rel="canonical"]'
120
+ ).first.get_attribute("href", timeout=2000)
102
121
  if canonical_url:
103
122
  pdf_url = f"{canonical_url}/pdfft?download=true"
104
123
  return [pdf_url]
@@ -12,7 +12,9 @@ class SemanticsVisualLibraryTranslator(BaseTranslator):
12
12
  """semantics Visual Library."""
13
13
 
14
14
  LABEL = "semantics Visual Library"
15
- URL_TARGET_PATTERN = r"^https?://www\.(blldb-online\.de/blldb|bdsl-online\.de/BDSL-DB)/suche/"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://www\.(blldb-online\.de/blldb|bdsl-online\.de/BDSL-DB)/suche/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -81,35 +81,37 @@ class SilverchairTranslator(BaseTranslator):
81
81
  def is_supplementary_material(url: str) -> bool:
82
82
  """Check if URL points to supplementary material."""
83
83
  supp_patterns = [
84
- r'/mmc\d+\.pdf', # Multimedia component (Lancet, Elsevier)
85
- r'/attachment/', # Generic attachment
86
- r'/supplement', # Supplementary material
87
- r'/supp', # Supplementary material (short)
88
- r'supplementary', # Supplementary in filename
89
- r'appendix', # Appendix
90
- r'SI\.pdf', # Supporting Information
84
+ r"/mmc\d+\.pdf", # Multimedia component (Lancet, Elsevier)
85
+ r"/attachment/", # Generic attachment
86
+ r"/supplement", # Supplementary material
87
+ r"/supp", # Supplementary material (short)
88
+ r"supplementary", # Supplementary in filename
89
+ r"appendix", # Appendix
90
+ r"SI\.pdf", # Supporting Information
91
91
  ]
92
- return any(re.search(pattern, url, re.IGNORECASE) for pattern in supp_patterns)
92
+ return any(
93
+ re.search(pattern, url, re.IGNORECASE) for pattern in supp_patterns
94
+ )
93
95
 
94
96
  try:
95
97
  # Method 1: Extract from standard Silverchair PDF link (JS line 121)
96
98
  # JavaScript: let pdfURL = attr(doc, 'a.article-pdfLink', 'href');
97
99
  # Get ALL article-pdfLink elements to filter out supplementary materials
98
- all_links = await page.locator('a.article-pdfLink').all()
100
+ all_links = await page.locator("a.article-pdfLink").all()
99
101
 
100
102
  for link in all_links:
101
103
  try:
102
- pdf_url = await link.get_attribute('href', timeout=1000)
104
+ pdf_url = await link.get_attribute("href", timeout=1000)
103
105
  if not pdf_url:
104
106
  continue
105
107
 
106
108
  # Make absolute URL if needed
107
- if pdf_url.startswith('/'):
108
- base_url = await page.evaluate('window.location.origin')
109
+ if pdf_url.startswith("/"):
110
+ base_url = await page.evaluate("window.location.origin")
109
111
  pdf_url = f"{base_url}{pdf_url}"
110
- elif not pdf_url.startswith('http'):
111
- base_url = await page.evaluate('window.location.href')
112
- base_url = re.sub(r'/[^/]*$', '', base_url)
112
+ elif not pdf_url.startswith("http"):
113
+ base_url = await page.evaluate("window.location.href")
114
+ base_url = re.sub(r"/[^/]*$", "", base_url)
113
115
  pdf_url = f"{base_url}/{pdf_url}"
114
116
 
115
117
  # Skip supplementary materials - we want the main article PDF
@@ -129,16 +131,18 @@ class SilverchairTranslator(BaseTranslator):
129
131
  try:
130
132
  # Method 2: JAMA Network journals (JS line 123)
131
133
  # JavaScript: if (!pdfURL) pdfURL = attr(doc, 'a#pdf-link', 'data-article-url');
132
- pdf_url = await page.locator('a#pdf-link').first.get_attribute('data-article-url', timeout=2000)
134
+ pdf_url = await page.locator("a#pdf-link").first.get_attribute(
135
+ "data-article-url", timeout=2000
136
+ )
133
137
 
134
138
  if pdf_url:
135
139
  # Make absolute URL if needed
136
- if pdf_url.startswith('/'):
137
- base_url = await page.evaluate('window.location.origin')
140
+ if pdf_url.startswith("/"):
141
+ base_url = await page.evaluate("window.location.origin")
138
142
  pdf_url = f"{base_url}{pdf_url}"
139
- elif not pdf_url.startswith('http'):
140
- base_url = await page.evaluate('window.location.href')
141
- base_url = re.sub(r'/[^/]*$', '', base_url)
143
+ elif not pdf_url.startswith("http"):
144
+ base_url = await page.evaluate("window.location.href")
145
+ base_url = re.sub(r"/[^/]*$", "", base_url)
142
146
  pdf_url = f"{base_url}/{pdf_url}"
143
147
 
144
148
  pdf_urls.append(pdf_url)
@@ -151,12 +155,12 @@ class SilverchairTranslator(BaseTranslator):
151
155
  # Method 3: Alternative PDF link selector
152
156
  # Some Silverchair sites use different selectors
153
157
  alternative_selectors = [
154
- 'a.pdf-download',
158
+ "a.pdf-download",
155
159
  'a[href*="/pdf/"]',
156
160
  'a[href*=".pdf"]',
157
161
  '.article-tools a[href*="pdf"]',
158
162
  'a:has-text("Download PDF")',
159
- 'a[data-article-url*="pdf"]'
163
+ 'a[data-article-url*="pdf"]',
160
164
  ]
161
165
 
162
166
  for selector in alternative_selectors:
@@ -166,19 +170,25 @@ class SilverchairTranslator(BaseTranslator):
166
170
 
167
171
  for link in all_links:
168
172
  try:
169
- pdf_link = await link.get_attribute('href', timeout=500)
173
+ pdf_link = await link.get_attribute("href", timeout=500)
170
174
  if not pdf_link:
171
175
  # Try data-article-url attribute
172
- pdf_link = await link.get_attribute('data-article-url', timeout=500)
176
+ pdf_link = await link.get_attribute(
177
+ "data-article-url", timeout=500
178
+ )
173
179
 
174
180
  if pdf_link:
175
181
  # Make absolute URL
176
- if pdf_link.startswith('/'):
177
- base_url = await page.evaluate('window.location.origin')
182
+ if pdf_link.startswith("/"):
183
+ base_url = await page.evaluate(
184
+ "window.location.origin"
185
+ )
178
186
  pdf_link = f"{base_url}{pdf_link}"
179
- elif not pdf_link.startswith('http'):
180
- base_url = await page.evaluate('window.location.href')
181
- base_url = re.sub(r'/[^/]*$', '', base_url)
187
+ elif not pdf_link.startswith("http"):
188
+ base_url = await page.evaluate(
189
+ "window.location.href"
190
+ )
191
+ base_url = re.sub(r"/[^/]*$", "", base_url)
182
192
  pdf_link = f"{base_url}/{pdf_link}"
183
193
 
184
194
  # Skip supplementary materials
@@ -198,13 +208,15 @@ class SilverchairTranslator(BaseTranslator):
198
208
  # Method 3.5: Lancet-specific PDF URL construction
199
209
  try:
200
210
  # Lancet uses /action/showPdf?pii=<PII> pattern
201
- current_url = await page.evaluate('window.location.href')
202
- if 'thelancet.com' in current_url:
211
+ current_url = await page.evaluate("window.location.href")
212
+ if "thelancet.com" in current_url:
203
213
  # Extract PII from URL like /article/PIIS1474-4422(13)70075-9/fulltext
204
- pii_match = re.search(r'/article/(PII[A-Z0-9\-()]+)', current_url, re.IGNORECASE)
214
+ pii_match = re.search(
215
+ r"/article/(PII[A-Z0-9\-()]+)", current_url, re.IGNORECASE
216
+ )
205
217
  if pii_match:
206
218
  pii = pii_match.group(1)
207
- base_url = await page.evaluate('window.location.origin')
219
+ base_url = await page.evaluate("window.location.origin")
208
220
  pdf_url = f"{base_url}/action/showPdf?pii={pii}"
209
221
  pdf_urls.append(pdf_url)
210
222
  return pdf_urls
@@ -214,16 +226,18 @@ class SilverchairTranslator(BaseTranslator):
214
226
  # Method 4: Extract from meta tags (common fallback)
215
227
  try:
216
228
  # Many Silverchair sites use citation_pdf_url meta tag
217
- pdf_url = await page.locator('meta[name="citation_pdf_url"]').first.get_attribute('content', timeout=2000)
229
+ pdf_url = await page.locator(
230
+ 'meta[name="citation_pdf_url"]'
231
+ ).first.get_attribute("content", timeout=2000)
218
232
 
219
233
  if pdf_url:
220
234
  # Make absolute URL if needed
221
- if pdf_url.startswith('/'):
222
- base_url = await page.evaluate('window.location.origin')
235
+ if pdf_url.startswith("/"):
236
+ base_url = await page.evaluate("window.location.origin")
223
237
  pdf_url = f"{base_url}{pdf_url}"
224
- elif not pdf_url.startswith('http'):
225
- base_url = await page.evaluate('window.location.href')
226
- base_url = re.sub(r'/[^/]*$', '', base_url)
238
+ elif not pdf_url.startswith("http"):
239
+ base_url = await page.evaluate("window.location.href")
240
+ base_url = re.sub(r"/[^/]*$", "", base_url)
227
241
  pdf_url = f"{base_url}/{pdf_url}"
228
242
 
229
243
  pdf_urls.append(pdf_url)
@@ -235,14 +249,16 @@ class SilverchairTranslator(BaseTranslator):
235
249
  # Method 5: Construct PDF URL from DOI (for Oxford and similar)
236
250
  try:
237
251
  # Get DOI from meta tag
238
- doi = await page.locator('meta[name="citation_doi"]').first.get_attribute('content', timeout=2000)
252
+ doi = await page.locator('meta[name="citation_doi"]').first.get_attribute(
253
+ "content", timeout=2000
254
+ )
239
255
 
240
256
  if doi:
241
257
  # Clean DOI (remove prefix if present)
242
- doi = re.sub(r'^(doi:|https?://doi\.org/)', '', doi)
258
+ doi = re.sub(r"^(doi:|https?://doi\.org/)", "", doi)
243
259
 
244
260
  # Try common Silverchair PDF URL patterns
245
- base_url = await page.evaluate('window.location.origin')
261
+ base_url = await page.evaluate("window.location.origin")
246
262
 
247
263
  # Pattern 1: /article-pdf/DOI
248
264
  pdf_url = f"{base_url}/article-pdf/{doi}"
@@ -256,21 +272,23 @@ class SilverchairTranslator(BaseTranslator):
256
272
  try:
257
273
  # Some publishers have a download center
258
274
  download_selectors = [
259
- 'a.downloadsLink',
275
+ "a.downloadsLink",
260
276
  'a:has-text("Download")',
261
- '.article-navigation a[href*="download"]'
277
+ '.article-navigation a[href*="download"]',
262
278
  ]
263
279
 
264
280
  for selector in download_selectors:
265
281
  try:
266
- download_link = await page.locator(selector).first.get_attribute('href', timeout=1000)
267
- if download_link and 'pdf' in download_link.lower():
268
- if download_link.startswith('/'):
269
- base_url = await page.evaluate('window.location.origin')
282
+ download_link = await page.locator(selector).first.get_attribute(
283
+ "href", timeout=1000
284
+ )
285
+ if download_link and "pdf" in download_link.lower():
286
+ if download_link.startswith("/"):
287
+ base_url = await page.evaluate("window.location.origin")
270
288
  download_link = f"{base_url}{download_link}"
271
- elif not download_link.startswith('http'):
272
- base_url = await page.evaluate('window.location.href')
273
- base_url = re.sub(r'/[^/]*$', '', base_url)
289
+ elif not download_link.startswith("http"):
290
+ base_url = await page.evaluate("window.location.href")
291
+ base_url = re.sub(r"/[^/]*$", "", base_url)
274
292
  download_link = f"{base_url}/{download_link}"
275
293
 
276
294
  pdf_urls.append(download_link)
@@ -12,7 +12,9 @@ class SoraTranslator(BaseTranslator):
12
12
  """SORA."""
13
13
 
14
14
  LABEL = "SORA"
15
- URL_TARGET_PATTERN = r"^https?://sora\.unm\.edu/(node/|search/node/|advancedsearch\?)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://sora\.unm\.edu/(node/|search/node/|advancedsearch\?)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -66,7 +66,7 @@ class SpringerTranslator(BaseTranslator):
66
66
  try:
67
67
  # Method 1: Extract DOI from current URL (JS line 238)
68
68
  current_url = page.url
69
- doi_match = re.search(r'/(10\.[^#?]+)', current_url)
69
+ doi_match = re.search(r"/(10\.[^#?]+)", current_url)
70
70
 
71
71
  if doi_match:
72
72
  doi = doi_match.group(1)
@@ -75,7 +75,7 @@ class SpringerTranslator(BaseTranslator):
75
75
  pdf_url = f"/content/pdf/{quote(doi, safe='')}.pdf"
76
76
 
77
77
  # Make absolute URL
78
- base_url = await page.evaluate('window.location.origin')
78
+ base_url = await page.evaluate("window.location.origin")
79
79
  pdf_url = f"{base_url}{pdf_url}"
80
80
  return [pdf_url]
81
81
 
@@ -84,13 +84,15 @@ class SpringerTranslator(BaseTranslator):
84
84
 
85
85
  # Method 2: Fallback to meta tag DOI (JS line 131)
86
86
  try:
87
- doi = await page.locator('meta[name="citation_doi"]').first.get_attribute('content', timeout=2000)
87
+ doi = await page.locator('meta[name="citation_doi"]').first.get_attribute(
88
+ "content", timeout=2000
89
+ )
88
90
  if doi:
89
91
  # Remove any prefix like "doi:" or "https://doi.org/"
90
- doi = re.sub(r'^(doi:|https?://doi\.org/)', '', doi)
92
+ doi = re.sub(r"^(doi:|https?://doi\.org/)", "", doi)
91
93
  pdf_url = f"/content/pdf/{quote(doi, safe='')}.pdf"
92
94
 
93
- base_url = await page.evaluate('window.location.origin')
95
+ base_url = await page.evaluate("window.location.origin")
94
96
  pdf_url = f"{base_url}{pdf_url}"
95
97
  return [pdf_url]
96
98
  except Exception:
@@ -99,16 +101,18 @@ class SpringerTranslator(BaseTranslator):
99
101
  # Method 3: Look for direct PDF link on page
100
102
  try:
101
103
  # Some Springer pages have direct PDF download links
102
- pdf_link = await page.locator('a[data-track-action="download pdf"], a.c-pdf-download__link').first.get_attribute('href', timeout=2000)
104
+ pdf_link = await page.locator(
105
+ 'a[data-track-action="download pdf"], a.c-pdf-download__link'
106
+ ).first.get_attribute("href", timeout=2000)
103
107
  if pdf_link:
104
108
  # Make absolute URL if needed
105
- if pdf_link.startswith('/'):
106
- base_url = await page.evaluate('window.location.origin')
109
+ if pdf_link.startswith("/"):
110
+ base_url = await page.evaluate("window.location.origin")
107
111
  pdf_link = f"{base_url}{pdf_link}"
108
- elif not pdf_link.startswith('http'):
109
- base_url = await page.evaluate('window.location.href')
112
+ elif not pdf_link.startswith("http"):
113
+ base_url = await page.evaluate("window.location.href")
110
114
  # Remove trailing path
111
- base_url = re.sub(r'/[^/]*$', '', base_url)
115
+ base_url = re.sub(r"/[^/]*$", "", base_url)
112
116
  pdf_link = f"{base_url}/{pdf_link}"
113
117
  return [pdf_link]
114
118
  except Exception:
@@ -5,9 +5,8 @@
5
5
  # ----------------------------------------
6
6
  from __future__ import annotations
7
7
  import os
8
- __FILE__ = (
9
- "./src/zotero_translators_python/individual/ssrn.py"
10
- )
8
+
9
+ __FILE__ = "./src/zotero_translators_python/individual/ssrn.py"
11
10
  __DIR__ = os.path.dirname(__FILE__)
12
11
  # ----------------------------------------
13
12
  """SSRN translator."""
@@ -60,4 +59,5 @@ class SSRNTranslator(BaseTranslator):
60
59
 
61
60
  return pdf_urls
62
61
 
62
+
63
63
  # EOF
@@ -12,7 +12,9 @@ class StanfordEncyclopediaOfPhilosophyTranslator(BaseTranslator):
12
12
  """Stanford Encyclopedia of Philosophy."""
13
13
 
14
14
  LABEL = "Stanford Encyclopedia of Philosophy"
15
- URL_TARGET_PATTERN = r"^https?://plato\.stanford\.edu/(archives/[a-z]{3}\d{4}/)?(entries|search)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://plato\.stanford\.edu/(archives/[a-z]{3}\d{4}/)?(entries|search)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class SuperlibTranslator(BaseTranslator):
12
12
  """Superlib."""
13
13
 
14
14
  LABEL = "Superlib"
15
- URL_TARGET_PATTERN = r"^https?://(book|jour)\.ucdrs\.superlib\.net/(search|views/specific)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://(book|jour)\.ucdrs\.superlib\.net/(search|views/specific)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class TreesearchTranslator(BaseTranslator):
12
12
  """Treesearch."""
13
13
 
14
14
  LABEL = "Treesearch"
15
- URL_TARGET_PATTERN = r"^https?://([^/]+\.)?treesearch\.fs\.fed\.us/(pubs/\d+$|search\.php)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://([^/]+\.)?treesearch\.fs\.fed\.us/(pubs/\d+$|search\.php)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class UniversityOfChicagoPressBooksTranslator(BaseTranslator):
12
12
  """University of Chicago Press Books."""
13
13
 
14
14
  LABEL = "University of Chicago Press Books"
15
- URL_TARGET_PATTERN = r"^https?://(www\.)?press\.uchicago\.edu/(ucp/books/|press/search.html)"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://(www\.)?press\.uchicago\.edu/(ucp/books/|press/search.html)"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class VLexTranslator(BaseTranslator):
12
12
  """vLex."""
13
13
 
14
14
  LABEL = "vLex"
15
- URL_TARGET_PATTERN = r"^https?://(www\.)?vlex\.(com|es|com\.mx|co\.uk|fr|de|it|pt|be|cl|co|pe|ar)/"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://(www\.)?vlex\.(com|es|com\.mx|co\.uk|fr|de|it|pt|be|cl|co|pe|ar)/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class WebOfScienceTranslator(BaseTranslator):
12
12
  """Web of Science."""
13
13
 
14
14
  LABEL = "Web of Science"
15
- URL_TARGET_PATTERN = r"^https?://([^/]+\.)?(webofknowledge|webofscience)\.(com|clarivate\.com)/"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https?://([^/]+\.)?(webofknowledge|webofscience)\.(com|clarivate\.com)/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool:
@@ -12,7 +12,9 @@ class WebOfScienceNextgenTranslator(BaseTranslator):
12
12
  """Web of Science Nextgen."""
13
13
 
14
14
  LABEL = "Web of Science Nextgen"
15
- URL_TARGET_PATTERN = r"^https://(www\.webofscience\.com|webofscience\.clarivate\.cn)/"
15
+ URL_TARGET_PATTERN = (
16
+ r"^https://(www\.webofscience\.com|webofscience\.clarivate\.cn)/"
17
+ )
16
18
 
17
19
  @classmethod
18
20
  def matches_url(cls, url: str) -> bool: